genome.fa.s581.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold581
Parameters: 2 7 7 80 10 50 1000
Length:  84035

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6088--6146	13	4.8	12	80	14	57	81	8	10	0	0.88
7233--7318	27	3.1	27	62	15	68	27	30	18	23	1.98
7398--7483	27	3.1	27	62	15	68	27	30	18	23	1.98
7672--7755	26	3.1	26	63	15	62	28	34	19	17	1.95
7759--7896	28	5.0	28	60	16	72	28	27	20	23	1.99
7128--8506	55	25.0	55	91	5	2124	28	29	20	21	1.98
9130--9190	21	3.0	20	81	6	79	37	16	13	32	1.87
9130--9190	20	3.1	19	79	11	77	37	16	13	32	1.87
9226--9293	19	3.9	19	78	21	85	35	11	14	38	1.83
9228--9290	32	2.0	32	96	0	117	34	12	15	36	1.86
9247--9271	13	1.9	13	100	0	50	36	16	16	32	1.90
9313--9379	33	2.0	33	85	0	89	25	13	16	44	1.84
11705--12046	52	6.5	53	70	17	205	29	26	11	31	1.92
11819--11894	27	2.8	28	89	2	109	23	34	21	21	1.97
11710--12045	104	3.2	103	71	13	297	30	26	12	31	1.92
11708--12111	212	1.9	212	89	3	625	28	26	12	31	1.93
13146--13184	20	2.0	20	94	0	69	30	20	17	30	1.96
16590--16718	52	2.5	52	92	0	213	27	17	18	36	1.93
16590--16738	52	2.9	52	87	6	212	29	16	18	34	1.94
16727--16751	13	1.9	13	100	0	50	36	16	16	32	1.90
16795--16846	13	3.5	13	73	26	50	36	17	13	32	1.89
16803--16867	19	3.7	19	75	23	79	38	16	12	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16795--16865	32	2.2	32	97	0	133	36	18	12	32	1.88
20075--20262	93	2.0	93	96	0	349	20	23	13	42	1.87
20678--20772	22	4.3	22	71	17	63	70	10	13	5	1.31
20677--20772	45	2.1	46	82	5	115	70	10	13	5	1.30
20970--21005	14	2.5	15	91	8	58	80	8	11	0	0.90
22053--22105	20	2.7	20	90	0	79	45	37	15	1	1.57
22267--22305	14	2.7	16	77	22	50	66	17	2	12	1.35
32240--32277	15	2.4	16	82	4	51	57	7	0	34	1.28
32521--32579	16	3.7	16	80	17	77	52	1	1	44	1.21
32822--32935	25	4.4	26	70	17	94	38	0	1	58	1.14
32903--33019	21	6.0	20	70	23	81	35	0	1	62	1.06
32920--32991	33	2.1	34	89	2	110	30	0	1	68	0.99
32920--33009	23	4.0	23	77	15	82	34	0	1	64	1.01
32951--33018	22	3.1	21	78	12	73	38	0	1	60	1.06
34079--34128	16	3.1	17	83	11	61	50	2	4	44	1.32
34091--34134	16	2.8	16	86	10	56	50	2	2	45	1.27
37245--37318	26	2.7	27	76	17	80	54	2	0	43	1.14
37471--37554	40	2.1	40	82	12	102	46	0	0	53	1.00
37476--37557	32	2.6	32	81	12	98	46	0	0	53	1.00
37480--37580	8	12.2	8	69	21	50	40	0	0	57	1.12
37897--37936	14	2.9	14	84	0	53	42	0	5	52	1.23
38876--38923	3	15.7	3	83	12	62	27	0	4	68	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38884--38934	22	2.3	22	93	3	84	27	0	7	64	1.21
44458--44494	2	18.5	2	100	0	74	48	0	0	51	1.00
45080--45121	3	14.0	3	100	0	84	33	0	0	66	0.92
46373--46419	18	2.6	18	83	12	60	34	0	2	63	1.06
47936--48010	20	3.8	20	78	0	87	34	13	12	40	1.81
47936--48013	40	2.0	39	87	2	111	34	12	12	39	1.82
48920--48977	23	2.7	23	92	7	95	17	8	8	65	1.45
52135--52160	2	13.0	2	100	0	52	50	50	0	0	1.00
53381--53424	14	3.2	13	78	9	52	52	0	0	47	1.00
53827--53873	24	2.0	24	83	8	60	61	2	4	31	1.27
54711--54774	25	2.7	24	72	18	62	64	1	3	31	1.19
54805--54845	16	2.4	17	88	8	57	0	21	0	78	0.76
55284--55333	16	3.0	16	88	5	64	0	20	0	80	0.72
55291--55332	20	2.1	20	91	8	68	0	16	0	83	0.65
55689--55785	27	3.5	28	70	23	78	63	0	0	36	0.94
55681--55778	37	2.8	36	77	17	107	65	0	0	34	0.93
55681--55784	10	11.0	9	68	16	59	65	0	0	34	0.93
55756--55780	6	4.2	6	100	0	50	68	0	0	32	0.90
55681--55780	29	3.6	27	71	14	87	65	0	0	35	0.93
54877--55825	499	1.9	498	85	5	1324	48	7	6	36	1.58
56201--56262	32	1.9	32	83	6	81	56	4	3	35	1.37
57511--57569	30	2.0	30	93	0	100	35	32	15	16	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64064--64408	53	6.5	53	77	2	291	28	25	14	31	1.94
64053--64381	106	3.1	106	84	3	394	29	25	14	31	1.95
67785--67845	30	2.0	30	93	0	104	36	31	14	18	1.91
68296--68323	14	2.0	14	100	0	56	57	21	7	14	1.61
70310--70355	24	1.9	24	90	0	74	67	0	2	30	1.03
74481--74512	16	2.0	16	100	0	64	56	6	12	25	1.59
74530--74897	181	2.0	181	97	0	691	43	12	16	27	1.84
77575--77626	20	2.5	21	84	3	61	34	15	11	38	1.83
81224--81293	19	3.9	18	70	22	67	37	14	12	35	1.84
81331--81389	23	2.7	22	87	7	84	28	13	16	40	1.87

Tables:   1

The End!