Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold583
Parameters: 2 7 7 80 10 50 1000
Length:  49921

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1365--1403
17
2.3
17
86
0
51
61
2
5
30
1.31
1846--1872
14
1.9
14
100
0
54
55
7
0
37
1.28
2430--2469
2
21.5
2
85
14
59
55
0
0
45
0.99
2430--2469
11
3.6
12
83
16
59
55
0
0
45
0.99
12014--12048
2
17.5
2
87
0
52
0
5
48
45
1.26
13115--13158
22
2.0
21
87
12
63
31
4
22
40
1.74
22332--22359
2
14.0
2
100
0
56
50
0
0
50
1.00
22469--22497
13
2.3
13
94
5
51
20
0
0
79
0.74
22629--22665
18
2.0
19
89
5
58
43
0
0
56
0.99
22787--22823
15
2.4
16
90
4
58
48
0
2
48
1.15
22806--22844
18
2.1
19
85
9
53
43
0
2
53
1.14
23930--23966
16
2.4
17
86
13
53
51
5
0
43
1.24
24023--24056
14
2.3
15
90
5
52
47
0
0
52
1.00
25494--25525
16
2.0
16
93
0
55
40
0
6
53
1.26
27365--27396
15
2.3
15
89
10
50
37
0
0
62
0.95
28105--28154
16
3.1
16
80
11
66
36
16
10
38
1.82
28383--28421
21
1.9
20
84
5
51
41
0
5
53
1.23
28492--28538
20
2.4
19
86
6
67
53
2
4
40
1.32
31964--32014
16
2.9
18
72
21
54
43
0
0
56
0.99
44433--44461
2
14.5
2
100
0
58
48
0
0
51
1.00
44921--44970
18
2.8
17
76
11
55
48
2
0
50
1.12
46622--46667
23
1.9
23
86
8
65
60
2
0
36
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47454--47548
44
2.2
45
88
3
140
60
15
5
18
1.54
47657--47834
58
3.1
59
82
10
215
48
4
3
43
1.41
47705--47848
59
2.4
57
81
12
132
49
4
4
41
1.43
48865--48924
14
4.4
14
78
4
59
50
0
0
50
1.00

Tables:   1

The End!