genome.fa.s584.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold584
Parameters: 2 7 7 80 10 50 1000
Length:  85357

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11013--11248	44	5.4	44	71	14	132	21	24	14	38	1.91
10990--11323	132	2.6	130	81	5	390	22	22	13	41	1.89
11357--11599	101	2.4	101	78	8	262	24	26	11	37	1.89
11598--12094	42	11.8	41	76	8	349	15	26	17	40	1.90
11598--12094	84	5.9	84	76	4	394	15	26	17	40	1.90
11598--11980	168	2.3	168	85	0	478	16	26	17	39	1.90
11646--12094	126	3.6	126	77	4	440	15	26	18	40	1.90
12604--12666	33	2.0	33	84	9	87	69	1	0	28	0.97
12611--12653	22	1.9	23	90	4	70	69	2	0	27	1.00
12605--12661	22	2.6	22	73	15	64	71	1	0	26	0.95
13093--13157	28	2.2	31	83	8	82	52	9	23	15	1.71
13586--13841	128	2.0	128	97	0	485	35	17	14	33	1.90
13808--13863	19	2.9	19	78	2	58	32	17	12	37	1.88
18268--18327	13	5.1	13	73	22	60	33	16	11	38	1.85
18266--18348	33	2.5	33	98	0	157	34	16	12	36	1.86
18281--18366	20	4.7	19	74	21	76	32	17	11	38	1.86
22931--22970	20	2.0	21	95	5	73	40	7	15	37	1.75
27705--27856	79	1.9	80	84	9	204	32	14	25	27	1.95
27786--28012	106	2.1	109	85	4	309	32	13	26	27	1.94
30295--30369	20	3.7	21	91	3	93	46	13	13	26	1.80
30951--31401	61	7.4	62	87	3	628	28	19	26	25	1.99
32375--32434	9	7.0	8	80	14	66	0	1	13	85	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32375--32434	16	3.8	16	75	6	59	0	1	13	85	0.69
32375--32433	26	2.3	26	88	5	84	0	1	11	86	0.65
32387--32423	7	5.6	7	87	6	51	0	0	10	89	0.49
33688--33736	13	4.2	13	73	24	54	38	18	10	32	1.84
33688--33757	33	2.1	34	86	7	99	35	20	11	32	1.88
33786--33841	19	2.9	19	89	2	76	33	16	17	32	1.92
33826--33865	13	3.1	13	100	0	80	40	15	15	30	1.87
34411--34477	21	3.3	20	80	16	84	31	31	4	32	1.78
34413--34480	19	3.3	21	82	14	79	30	30	4	33	1.77
36300--36328	13	2.2	13	100	0	58	41	17	13	27	1.87
40878--40918	3	13.7	3	84	0	55	29	34	0	36	1.58
42471--42519	13	4.2	13	73	24	54	38	18	10	32	1.84
42471--42540	33	2.1	34	86	7	99	35	20	11	32	1.88
42569--42624	19	2.9	19	86	2	76	33	14	17	33	1.90
42590--42652	32	1.9	32	87	3	90	38	11	19	31	1.86
48543--49108	192	2.9	192	98	0	1087	20	28	17	33	1.95
55122--55275	78	2.0	79	81	8	181	37	14	20	26	1.92
57989--58028	21	1.9	21	85	10	55	55	2	7	35	1.42
62634--62766	66	2.0	66	98	0	257	40	13	18	27	1.88
63708--64180	164	2.9	162	76	9	436	47	16	7	28	1.74
64717--64758	19	2.1	19	86	8	57	59	19	2	19	1.49
65429--65713	147	1.9	152	80	9	334	48	9	9	32	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67461--67537	38	2.0	38	94	0	136	28	16	22	32	1.96
69051--69075	13	1.9	13	100	0	50	32	16	16	36	1.90
70655--70820	43	3.7	42	66	15	109	36	17	25	20	1.94
70611--70817	92	2.3	92	88	2	301	36	18	24	20	1.95
70806--71110	41	7.5	40	71	9	163	44	15	20	20	1.87
70806--71809	81	12.4	81	75	8	517	42	15	22	20	1.89
70806--71863	162	6.5	162	80	3	931	41	15	22	19	1.89
71032--71313	41	7.0	40	68	10	117	40	13	24	21	1.89
71409--71676	41	6.6	40	66	10	114	42	14	22	20	1.89
70927--71845	323	2.8	317	77	8	922	41	15	23	19	1.90
70845--71899	242	4.3	243	78	6	610	42	15	22	19	1.89
70927--71861	404	2.3	404	81	3	1112	41	15	22	19	1.90
74100--74169	20	3.5	20	74	14	63	47	11	20	21	1.81
74473--74705	112	2.1	113	82	7	278	37	15	15	31	1.88
75612--75742	52	2.5	52	79	7	133	29	12	26	31	1.92
75665--75777	51	2.2	51	85	0	145	32	10	24	31	1.90
75762--75830	28	2.5	28	82	0	84	24	17	34	23	1.96
75734--75974	107	2.3	107	79	4	281	34	12	24	28	1.92
79029--79233	53	3.9	53	94	1	342	30	17	19	33	1.94
79272--79334	32	2.0	32	90	0	99	39	14	12	33	1.84
79293--79317	13	1.9	13	100	0	50	32	16	16	36	1.90
80078--80226	50	2.8	53	76	7	144	34	16	23	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80282--80720	28	15.1	28	73	11	285	23	17	28	30	1.97
80283--80711	29	14.7	29	76	11	326	23	17	28	31	1.97
80277--80715	58	7.5	58	77	9	376	23	17	28	30	1.97
80572--80717	30	5.0	27	73	12	94	23	17	28	30	1.97
80365--80706	180	1.9	180	86	3	492	24	17	27	29	1.98
82154--82263	1	110.0	1	74	0	85	1	1	10	86	0.73
82154--82263	8	13.8	8	77	12	111	1	1	10	86	0.73
82154--82256	40	2.6	41	86	10	135	1	1	9	86	0.73
82154--82263	49	2.3	47	85	6	141	1	1	10	86	0.73
82154--82263	42	2.8	36	81	14	121	1	1	10	86	0.73

Tables:   1

The End!