genome.fa.s585.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold585
Parameters: 2 7 7 80 10 50 1000
Length:  63318

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328--385	27	2.1	27	81	6	64	60	3	0	36	1.14
1722--1761	20	2.1	19	85	4	53	45	5	0	50	1.23
1784--1839	18	3.3	17	75	14	53	42	3	0	53	1.18
1776--1823	15	3.1	15	77	16	53	45	0	0	54	0.99
1744--1839	32	2.8	33	80	12	88	43	4	0	52	1.20
1946--1970	4	6.2	4	100	0	50	24	0	0	76	0.80
2164--2206	11	4.0	11	80	14	54	34	0	0	65	0.93
2164--2206	22	2.0	22	95	0	77	34	0	0	65	0.93
7134--7285	34	4.5	34	88	0	205	42	26	6	24	1.79
7455--7500	21	2.2	21	88	0	65	52	0	2	45	1.13
7954--7998	17	2.6	17	82	3	54	51	0	0	48	1.00
7978--8025	24	2.0	24	83	0	60	54	0	0	45	0.99
8830--8858	2	14.5	2	100	0	58	48	0	0	51	1.00
13229--13299	20	3.5	20	74	0	70	33	15	11	39	1.83
21493--21558	25	2.4	29	80	14	79	60	0	0	39	0.97
21488--21542	16	3.4	16	73	19	51	63	0	0	36	0.95
21489--21551	30	2.1	31	85	8	85	61	0	0	38	0.96
21489--21541	11	5.1	11	77	13	58	64	0	0	35	0.94
21616--21685	35	1.9	36	82	5	88	54	5	2	37	1.39
21709--21743	3	11.7	3	100	0	70	34	0	0	65	0.93
23950--24017	16	4.2	16	75	0	55	14	20	22	42	1.88
23942--24017	32	2.4	31	80	6	89	13	19	22	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24358--24391	17	1.9	18	88	5	52	29	0	8	61	1.26
25140--25182	22	2.0	22	100	0	86	37	4	6	51	1.50
25377--25496	32	3.8	32	68	11	84	12	15	27	45	1.82
25403--25447	16	2.8	16	93	0	72	8	15	24	51	1.72
25420--25510	16	5.7	16	75	5	85	13	14	27	45	1.82
25505--25551	21	2.2	21	84	0	67	12	6	29	51	1.65
26340--26441	38	2.6	39	85	1	143	33	18	12	35	1.89
26332--26500	39	4.4	38	74	5	142	30	18	14	35	1.92
26329--26500	78	2.2	77	81	5	195	30	19	15	34	1.92
26550--26663	39	2.9	39	76	5	104	29	11	14	44	1.79
27460--27580	61	2.0	61	88	3	179	24	19	7	47	1.75
30130--30366	89	2.7	88	84	4	273	37	9	24	28	1.87
30130--30386	88	2.9	89	82	5	288	37	9	24	28	1.87
32885--32934	20	2.5	20	86	3	64	30	12	20	38	1.88
33450--33529	32	2.5	32	87	4	117	37	13	16	32	1.88
33452--33514	19	3.6	19	70	24	66	33	12	19	34	1.89
33544--33618	20	3.8	20	96	0	132	34	16	12	37	1.85
41742--41949	31	6.7	31	84	7	260	22	29	16	31	1.96
41742--41949	64	3.3	62	88	4	276	22	29	16	31	1.96
41735--41949	95	2.3	93	85	6	276	21	29	15	32	1.95
41735--42256	92	5.4	94	75	14	260	20	32	14	33	1.92
41936--42256	33	9.7	33	81	8	352	19	34	13	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42030--42215	60	3.0	60	87	4	255	20	33	13	31	1.92
41997--42183	92	2.0	93	88	4	279	19	34	13	31	1.91
42229--42324	30	3.3	29	84	7	115	35	32	15	16	1.91
42395--42907	39	12.0	39	69	18	265	29	26	18	25	1.98
42435--43008	39	12.8	47	70	17	228	28	26	19	25	1.99
42704--43046	49	7.3	49	75	14	294	25	26	19	27	1.99
42353--42955	88	6.9	88	88	2	786	28	26	18	26	1.98
42884--43110	52	4.5	51	77	7	196	23	25	20	30	1.98
42884--43115	101	2.3	101	82	3	261	22	25	19	31	1.98
43852--43890	21	1.9	20	94	5	69	35	15	12	35	1.86
52303--52510	31	6.7	31	82	5	258	23	29	16	30	1.96
52304--52485	64	2.9	63	89	3	260	23	28	17	31	1.96
52296--52510	95	2.3	93	86	4	283	22	30	16	31	1.96
52497--52817	33	9.7	33	80	9	336	19	34	13	33	1.90
52591--52776	60	3.0	60	87	4	246	19	33	13	32	1.91
52558--52748	92	2.1	93	89	4	287	18	34	13	33	1.90
52497--52815	159	2.0	161	87	6	457	19	34	13	33	1.90
52790--52885	30	3.3	29	79	7	106	36	32	14	16	1.89
52957--53481	39	11.8	45	75	16	365	27	26	19	26	1.99
52914--53428	87	5.9	87	79	10	543	27	26	19	26	1.99
53169--53520	49	7.6	48	79	11	278	25	26	19	28	1.99
53043--53428	127	3.0	127	84	5	504	27	26	19	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53141--53473	173	1.9	177	90	3	530	25	27	20	26	1.99
53347--53566	49	4.4	49	78	6	199	23	25	19	32	1.98
53343--53566	101	2.2	101	80	3	245	23	25	19	31	1.98
61573--61624	21	2.4	22	90	3	79	61	7	0	30	1.24
61689--61745	24	2.3	27	79	14	68	38	1	1	57	1.19
61688--61752	24	2.7	23	74	11	58	35	1	3	60	1.22
63088--63182	32	3.0	31	83	11	129	34	12	20	32	1.90
63118--63180	18	3.6	17	79	20	69	31	12	22	33	1.91
63106--63160	12	3.8	14	78	21	60	34	14	20	30	1.92

Tables:   1

The End!