Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold586

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9868
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32


Found at i:1129 original size:24 final size:25

Alignment explanation


    Indices: 1102--1164  Score: 85
    Period size: 24  Copynumber: 2.6  Consensus size: 25

       1092 AGGTGATCTT

                                      
       1102 TGATCAGGGTTTCAAAAG-A-AATGG
          1 TGATCAGGGTTTCAAAAGTAGAA-GG

                *           *        
       1126 TGATTAGGGTTTCAAATGTAGAAGG
          1 TGATCAGGGTTTCAAAAGTAGAAGG

                          
       1151 TGATCAGGGTTTCA
          1 TGATCAGGGTTTCA

       1165 TTTGCCCCCC


Statistics
Matches: 34,  Mismatches: 3, Indels: 3
        0.85            0.08        0.08

Matches are distributed among these distances:
  24   16  0.47
  25   16  0.47
  26    2  0.06

ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30


Consensus pattern (25 bp):   
TGATCAGGGTTTCAAAAGTAGAAGG

Done.