Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold588
Parameters: 2 7 7 80 10 50 1000
Length:  104647

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1570--1598
2
14.5
2
100
0
58
48
0
0
51
1.00
1864--1914
23
2.3
21
86
6
66
56
0
0
43
0.99
1864--1917
21
2.4
23
87
6
76
55
0
0
44
0.99
2344--2381
2
20.5
2
84
15
55
50
0
0
50
1.00
2344--2381
17
2.3
17
90
4
60
50
0
0
50
1.00
2937--2972
2
18.0
2
100
0
72
50
0
0
50
1.00
3022--3048
6
4.5
6
100
0
54
14
0
0
85
0.61
3406--3436
16
1.9
16
93
0
53
51
0
3
45
1.17
3443--3467
8
3.1
8
100
0
50
52
0
0
48
1.00
3504--3546
17
2.5
17
80
3
50
58
0
2
39
1.11
16178--16211
17
2.0
17
88
0
50
32
0
2
64
1.08
16211--16242
12
2.8
11
90
9
55
34
0
0
65
0.93
16199--16252
26
2.0
27
85
3
74
33
1
0
64
1.04
16239--16271
17
1.9
17
88
11
50
45
6
0
48
1.27
16627--16678
23
2.4
22
84
12
63
67
0
3
28
1.08
16932--17010
6
12.8
6
80
12
81
36
0
0
63
0.95
16953--17010
25
2.3
27
82
14
86
34
0
0
65
0.93
16927--17013
31
2.8
31
85
1
122
39
0
0
60
0.97
16959--17012
25
2.2
24
93
3
90
37
0
0
62
0.95
16979--17021
19
2.2
20
84
8
54
46
0
0
53
1.00
23194--23266
21
3.5
20
78
10
76
60
0
1
38
1.06
23215--23258
11
4.1
11
79
5
54
63
0
2
34
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23151--23263
27
4.1
28
73
14
83
57
0
0
40
1.11
23617--23681
12
5.2
12
72
17
51
55
1
0
43
1.09
26903--27080
89
2.0
89
94
0
311
43
15
19
21
1.88
29934--30087
75
2.0
78
94
3
278
50
7
20
21
1.73
35585--35619
3
11.7
3
87
0
52
40
0
34
25
1.56
36360--36414
22
2.5
21
78
16
58
36
0
0
63
0.95
36356--36418
23
2.7
23
76
16
67
39
0
0
60
0.97
40145--40171
14
1.9
14
100
0
54
25
22
7
44
1.79
41893--41949
30
1.9
29
86
10
80
77
1
1
19
0.95
41891--41955
20
3.3
19
80
6
67
76
1
1
20
0.94
41881--41952
32
2.3
32
80
9
85
72
1
2
23
1.06
46618--46645
14
2.0
14
100
0
56
64
0
0
35
0.94
49284--49338
6
9.5
6
88
7
51
40
0
10
49
1.38
49292--49336
2
22.5
2
90
0
72
44
0
4
51
1.21
53888--53912
2
12.5
2
100
0
50
52
0
48
0
1.00
55818--55860
2
21.5
2
90
0
68
55
0
0
44
0.99
57333--57364
2
17.0
2
87
12
50
53
0
0
46
1.00
57364--57390
2
13.5
2
100
0
54
51
0
48
0
1.00
58364--58400
18
2.0
20
84
10
51
43
0
0
56
0.99
59424--59455
2
16.0
2
93
0
55
46
0
3
50
1.17
62349--62384
16
2.3
15
90
4
54
19
0
2
77
0.88
62481--62523
21
2.0
21
86
8
61
44
2
0
53
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62660--62708
4
12.2
4
91
0
62
51
6
0
42
1.27
62660--62708
6
8.2
6
86
0
62
51
6
0
42
1.27
66441--66496
18
3.0
18
84
5
67
35
0
0
64
0.94
66479--66528
24
2.1
23
85
3
64
52
0
0
48
1.00
67675--67898
114
2.0
114
92
0
376
29
19
17
33
1.94
72861--72946
45
1.9
45
100
0
172
44
25
4
25
1.73
75917--75946
2
15.0
2
100
0
60
50
0
0
50
1.00
76957--76988
3
10.7
3
93
0
55
28
0
3
68
1.04
77383--77424
2
21.0
2
100
0
84
50
0
0
50
1.00
77893--77923
2
15.5
2
100
0
62
48
0
0
51
1.00
78139--78173
2
17.5
2
100
0
70
48
0
0
51
1.00
79592--79629
12
3.1
12
85
14
51
39
2
2
55
1.28
80391--80861
121
3.8
122
79
6
511
33
16
15
35
1.89
84924--84972
24
2.0
25
88
7
75
42
0
0
57
0.99
85650--85675
12
2.2
12
100
0
52
0
7
0
92
0.39
88775--88803
2
14.5
2
100
0
58
51
0
0
48
1.00
89669--89724
12
4.4
13
72
18
55
57
0
1
41
1.09
92418--92444
2
13.5
2
100
0
54
51
0
0
48
1.00
95571--95596
3
8.7
3
100
0
52
0
34
30
34
1.58
100313--100343
13
2.3
14
94
5
55
38
0
3
58
1.15
100348--100381
16
2.0
16
88
11
50
44
0
0
55
0.99
100748--100792
19
2.4
18
82
17
56
55
0
2
42
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100751--100793
20
2.2
19
80
12
52
55
0
2
41
1.12
102379--102418
21
1.9
21
85
10
55
40
7
0
52
1.30
103248--103286
13
3.1
12
82
10
51
66
0
0
33
0.92
103772--103813
18
2.2
20
87
8
61
30
0
0
69
0.89
103750--103824
25
3.0
26
76
3
73
36
5
0
58
1.21
104043--104079
18
2.1
18
95
5
67
43
0
0
56
0.99

Tables:   1

The End!