genome.fa.s590.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold590
Parameters: 2 7 7 80 10 50 1000
Length:  107263

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1792--2225	163	2.6	164	77	9	438	51	7	12	28	1.67
3547--3609	33	1.9	33	87	6	92	33	15	14	36	1.88
5512--5538	13	2.1	13	100	0	54	40	14	14	29	1.86
11969--11993	13	1.9	13	100	0	50	32	16	16	36	1.90
12002--12121	52	2.3	52	97	0	222	35	18	17	29	1.94
17585--17609	13	1.9	13	100	0	50	28	16	16	40	1.89
17596--17650	19	2.9	19	91	0	83	25	21	14	38	1.92
23891--23927	13	2.8	13	87	0	56	35	13	16	35	1.88
26034--26112	34	2.4	33	82	4	104	31	10	7	50	1.64
26041--26106	34	1.9	34	90	0	105	33	9	7	50	1.62
26414--26475	32	1.9	32	86	3	88	27	14	16	41	1.87
26445--26500	19	2.8	20	89	2	78	33	16	16	33	1.91
26447--26500	20	2.8	19	88	2	72	33	16	16	33	1.92
26531--26626	33	2.9	34	89	6	119	39	13	15	31	1.86
26562--26627	20	3.7	20	69	26	74	39	12	16	31	1.85
32119--32155	19	2.0	19	89	5	58	48	10	0	40	1.38
32148--32188	16	2.5	16	84	4	55	63	0	0	36	0.95
36218--36289	20	3.7	19	81	7	74	30	16	12	40	1.86
36320--36344	13	1.9	13	100	0	50	32	16	20	32	1.94
37958--37989	15	2.1	15	94	0	55	43	0	28	28	1.55
41093--41154	27	2.3	27	91	0	97	25	19	19	35	1.95
41284--41332	22	2.3	20	79	6	53	34	14	2	48	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43652--43678	13	2.1	13	100	0	54	29	14	14	40	1.86
43663--43718	19	2.9	19	78	2	67	28	16	16	39	1.89
43747--43798	20	2.6	20	90	6	79	30	15	21	32	1.94
45051--45105	19	2.8	19	86	2	74	38	20	7	34	1.80
47323--47348	13	2.0	13	100	0	52	30	15	15	38	1.88
48047--48090	21	2.1	21	83	8	54	27	31	2	38	1.69
49709--49755	21	2.3	20	76	23	53	42	4	19	34	1.70
49876--49914	13	3.0	13	88	0	60	35	12	17	33	1.88
49900--49976	20	3.6	20	77	16	73	44	14	15	25	1.84
51998--52028	15	2.1	15	93	0	53	12	22	16	48	1.80
53831--53875	21	2.1	21	84	8	56	22	20	4	53	1.63
56615--56865	131	1.9	132	81	0	306	44	12	17	25	1.84
56802--57032	88	2.6	88	81	7	252	42	10	19	27	1.83
56518--57388	45	19.6	45	69	9	307	42	11	18	27	1.84
57048--57232	89	2.1	89	82	6	223	44	11	18	24	1.83
57113--57277	89	1.9	89	80	2	197	46	12	17	23	1.83
57036--57434	134	3.0	135	71	11	330	44	10	18	27	1.82
58089--58308	108	2.0	108	97	0	413	35	12	20	30	1.90
64499--64524	13	2.0	13	100	0	52	38	15	15	30	1.88
66742--66786	21	2.1	21	84	8	56	53	4	20	22	1.63
68589--68619	15	2.1	15	93	0	53	48	16	22	12	1.80
70812--70858	21	2.3	20	78	10	51	36	21	0	42	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73262--73311	20	2.5	20	96	0	91	48	14	10	28	1.75
85530--85567	20	1.9	20	89	10	60	39	13	13	34	1.83
86546--86627	28	2.9	28	80	7	96	26	17	31	24	1.97
86611--86739	51	2.5	52	81	11	158	33	9	24	32	1.87
89100--89125	13	2.0	13	100	0	52	38	15	15	30	1.88
89079--89145	33	2.0	33	88	0	98	43	16	14	25	1.86
89165--89231	19	3.9	18	76	23	81	37	14	11	35	1.84
89187--89211	13	1.9	13	100	0	50	32	16	16	36	1.90
89168--89230	32	2.0	32	96	0	117	36	15	12	34	1.86
89723--89765	21	2.0	21	81	0	50	11	11	18	58	1.63
91918--91968	20	2.5	20	93	0	93	27	17	15	39	1.90
91956--92009	19	2.8	20	85	2	83	31	18	12	37	1.89
92159--92739	289	2.0	289	98	0	1126	31	15	15	37	1.89
95210--95794	320	1.8	323	84	3	804	31	13	8	47	1.72
95210--95909	321	2.2	322	81	4	763	31	12	8	47	1.72
96431--96482	11	4.6	11	83	9	61	75	0	23	1	0.91
97326--97369	16	2.9	15	83	6	52	75	0	2	22	0.92

Tables:   1

The End!