Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold594
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 328579
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 3
Found at i:963 original size:20 final size:17
Alignment explanation
Indices: 940--978 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 17
930 TAAATATTTT
940 AAATATAATAAAATGTAATA
1 AAATAT-AT-AAAT-TAATA
960 AAATATATAAATTAATA
1 AAATATATAAATTAATA
977 AA
1 AA
979 TTAAAGCAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.37
18 4 0.21
19 2 0.11
20 6 0.32
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (17 bp):
AAATATATAAATTAATA
Found at i:964 original size:35 final size:33
Alignment explanation
Indices: 880--973 Score: 84
Period size: 33 Copynumber: 2.8 Consensus size: 33
870 TTAATATATT
**
880 TTAAAATTTTTAT-AATATAAATTATTAACATA
1 TTAAAATTAATATAAATATAAATTATTAACATA
* *
912 TTAAAATTTATATAAATATAAATATTTTAA-ATA
1 TTAAAATTAATATAAATATAAAT-TATTAACATA
*
945 TAATAAAATGTAATAAAATATATAAATTA
1 T--TAAAAT-TAATATAA-ATATAAATTA
974 ATAAATTAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
32 12 0.24
33 13 0.25
34 5 0.10
35 6 0.12
36 7 0.14
37 8 0.16
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (33 bp):
TTAAAATTAATATAAATATAAATTATTAACATA
Found at i:1401 original size:25 final size:25
Alignment explanation
Indices: 1353--1407 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
1343 TTTAGTAAAA
*
1353 AAATTTTTAAAATATCGAATAAAATT
1 AAATTTTTAAAAAATC-AATAAAATT
1379 AAATTATTTAAAAAAT-AATAAAATT
1 AAATT-TTTAAAAAATCAATAAAATT
1404 AAAT
1 AAAT
1408 ATCTTTTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 13 0.48
26 5 0.19
27 9 0.33
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (25 bp):
AAATTTTTAAAAAATCAATAAAATT
Found at i:1567 original size:21 final size:21
Alignment explanation
Indices: 1539--1584 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
1529 ATATCTTTAT
1539 TAAT-TTTAATATTATCACAA
1 TAATATTTAATATTATCACAA
* * *
1559 TAATATTTAATTTTATTATAA
1 TAATATTTAATATTATCACAA
1580 TAATA
1 TAATA
1585 ATTTCTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (21 bp):
TAATATTTAATATTATCACAA
Found at i:4018 original size:18 final size:18
Alignment explanation
Indices: 3984--4018 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
3974 GTATGATTAA
*
3984 TTTATAATATATCATTTT
1 TTTATAATAAATCATTTT
*
4002 TTTATAATAAATTATTT
1 TTTATAATAAATCATTT
4019 AACAAATTGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTATAATAAATCATTTT
Found at i:4034 original size:18 final size:18
Alignment explanation
Indices: 4013--4054 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
4003 TTATAATAAA
* *
4013 TTATTTAACAAATTGATT
1 TTATATAACAAATTAATT
*
4031 TTATATAACAAGTTAATT
1 TTATATAACAAATTAATT
4049 TTATAT
1 TTATAT
4055 CTTTTTGTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.50
Consensus pattern (18 bp):
TTATATAACAAATTAATT
Found at i:10160 original size:28 final size:28
Alignment explanation
Indices: 10117--10175 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
10107 AATGCATGAC
10117 AAAATTTATAAATAAAT-TATTAATATGTAA
1 AAAATTTAT-AATAAATATA-TAATAT-TAA
10147 AAAATTTAT-ATAAATATATAATATTAA
1 AAAATTTATAATAAATATATAATATTAA
10174 AA
1 AA
10176 TTTAAATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
27 5 0.18
28 12 0.43
29 2 0.07
30 9 0.32
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (28 bp):
AAAATTTATAATAAATATATAATATTAA
Found at i:10310 original size:36 final size:36
Alignment explanation
Indices: 10261--10329 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
10251 TTTATCCTTT
* *
10261 AAAGGTGGCAAGATAGTGAATT-GGATACTCTTTTTG
1 AAAGGTAGCAAGATAGTAAATTGGGA-ACTCTTTTTG
* *
10297 AAAGGTAGTAAGATATTAAATTGGGAACTCTTT
1 AAAGGTAGCAAGATAGTAAATTGGGAACTCTTT
10330 AGCAAGTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
36 25 0.89
37 3 0.11
ACGTcount: A:0.35, C:0.07, G:0.25, T:0.33
Consensus pattern (36 bp):
AAAGGTAGCAAGATAGTAAATTGGGAACTCTTTTTG
Found at i:13302 original size:2 final size:2
Alignment explanation
Indices: 13295--13319 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
13285 ATGCAAAGTG
13295 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
13320 GAGATTTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14116 original size:18 final size:18
Alignment explanation
Indices: 14077--14117 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
14067 TGTTTGTACT
*
14077 ATATTTTTATAATTTTTG
1 ATATTTTTATAAATTTTG
14095 -TATTTTT-TAAGATTTTG
1 ATATTTTTATAA-ATTTTG
14112 ATATTT
1 ATATTT
14118 GTATCTTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 3 0.15
17 12 0.60
18 5 0.25
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (18 bp):
ATATTTTTATAAATTTTG
Found at i:16687 original size:18 final size:19
Alignment explanation
Indices: 16653--16689 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
16643 ATTATAATAT
16653 AATATAAAAATATGAATTA
1 AATATAAAAATATGAATTA
*
16672 AATATGAAAA-ATGAATTA
1 AATATAAAAATATGAATTA
16690 TTTGATCTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.30
Consensus pattern (19 bp):
AATATAAAAATATGAATTA
Found at i:25746 original size:21 final size:20
Alignment explanation
Indices: 25722--25773 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
25712 AAATGAAAAA
* *
25722 CTCTATTTTCTTTTCTTTTCT
1 CTCT-TTTTCTTCTCTTTTAT
25743 CTCTCTCTTT-TTCTCTTTTAT
1 CTCT-T-TTTCTTCTCTTTTAT
25764 CTCTTTTTCT
1 CTCTTTTTCT
25774 GTTAATCCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
19 3 0.12
20 2 0.08
21 18 0.69
22 3 0.12
ACGTcount: A:0.04, C:0.27, G:0.00, T:0.69
Consensus pattern (20 bp):
CTCTTTTTCTTCTCTTTTAT
Found at i:28179 original size:19 final size:19
Alignment explanation
Indices: 28151--28200 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
28141 AAACAGTAAA
28151 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
*
28170 TGTATTGATACATAAGTGT
1 TGTATCGATACATAAGTGT
28189 TGTATCGATACA
1 TGTATCGATACA
28201 GTGTATCGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:28270 original size:13 final size:13
Alignment explanation
Indices: 28252--28277 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
28242 CATTATTCAA
28252 TGTATCGATACAT
1 TGTATCGATACAT
28265 TGTATCGATACAT
1 TGTATCGATACAT
28278 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:28341 original size:20 final size:20
Alignment explanation
Indices: 28316--28370 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
28306 TTTACCCAGA
*
28316 TGTATCGATACATT-TTGCAT
1 TGTATCGATACATTGCT-CAT
28336 TGTATCGATACATTGCTCAT
1 TGTATCGATACATTGCTCAT
28356 TGTATCGATACATTG
1 TGTATCGATACATTG
28371 TATCGATACA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
20 32 0.97
21 1 0.03
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.42
Consensus pattern (20 bp):
TGTATCGATACATTGCTCAT
Found at i:28369 original size:13 final size:13
Alignment explanation
Indices: 28353--28382 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
28343 ATACATTGCT
28353 CATTGTATCGATA
1 CATTGTATCGATA
28366 CATTGTATCGATA
1 CATTGTATCGATA
28379 CATT
1 CATT
28383 CAGGCATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:30788 original size:52 final size:51
Alignment explanation
Indices: 30672--30841 Score: 207
Period size: 51 Copynumber: 3.3 Consensus size: 51
30662 ATTTTTCGTC
* * * * * *
30672 TCGGGGATACTCCAA-TCCCGGTTTCATTTCCAAAACATCAATTTTTCTTAA
1 TCGGGGATACTCCAACT-CTGATTTTATTTCTAAAACACCAATTTTTCATAA
* *
30723 TCGGGGATACTCCAACTCTGATTTTATTTCTAAAGCACCCATTTTTCCATAA
1 TCGGGGATACTCCAACTCTGATTTTATTTCTAAAACACCAATTTTT-CATAA
* * * *
30775 TCGGGGATACTCCAACTCTGATTTTATTTTTAAAACACCGACTTTTCACAA
1 TCGGGGATACTCCAACTCTGATTTTATTTCTAAAACACCAATTTTTCATAA
30826 TCGGGGATACTCCAAC
1 TCGGGGATACTCCAAC
30842 CTCGTTATTT
Statistics
Matches: 104, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
51 57 0.55
52 47 0.45
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (51 bp):
TCGGGGATACTCCAACTCTGATTTTATTTCTAAAACACCAATTTTTCATAA
Found at i:30938 original size:76 final size:76
Alignment explanation
Indices: 30777--31133 Score: 435
Period size: 76 Copynumber: 4.6 Consensus size: 76
30767 TTCCATAATC
* * * * * * * *
30777 GGGGATACTCCAACTCTGATTTTATTTTTAAAACACCGACTTTTCACAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATC-AATTTT-TC-ATCGGGGATACTCTAAC
*
30842 CTCGTTATTTTCGA
63 CCCGTTATTTTCGA
* * * *
30856 AGGGACACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCATCGGGGATACTCAAACCCC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATCGGGGATACTCTAACCCC
30921 GTTATTTTCGA
66 GTTATTTTCGA
* * *
30932 GGGGACACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATCAGGGATACTCTAACCTC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATCGGGGATACTCTAACCCC
*
30997 GTTATTTTTGA
66 GTTATTTTCGA
* *
31008 GGGGATACTCCAACCCTGGTTTTATTTCTAAAACATTAATTTTTCATAATCGGGGATACTCTAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTC---ATCGGGGATACTCTAAC
*
31073 CCCGTTATTTTCAA
63 CCCGTTATTTTCGA
* * * * *
31087 GGGGATACTCCATCCCCGGTTTTATTTATAAAATACCAAATTTTCAT
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCAT
31134 AATTGGGGAT
Statistics
Matches: 245, Mismatches: 30, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
76 143 0.58
77 1 0.00
78 5 0.02
79 96 0.39
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.35
Consensus pattern (76 bp):
GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATCGGGGATACTCTAACCCC
GTTATTTTCGA
Found at i:31082 original size:155 final size:152
Alignment explanation
Indices: 30777--31151 Score: 453
Period size: 155 Copynumber: 2.4 Consensus size: 152
30767 TTCCATAATC
* * * * * * * *
30777 GGGGATACTCCAACTCTGATTTTATTTTTAAAACACCGACTTTTCACAATCGGGGATACTCCAAC
1 GGGGACACTCCAACCCCGGTTTTATTTATAAAACACCAAATTTT--C-ATCAGGGATACTCCAAC
30842 CTCGTTATTTTCGAAGGGACACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCATCGGG
63 CTCGTTATTTTCGAAGGGACACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCATCGGG
*
30907 GATACTCAAACCCCGTTATTTTCGA
128 GATACTCAAACCCCGTTATTTTCAA
* * * *
30932 GGGGACACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATCAGGGATACTCTAACCTC
1 GGGGACACTCCAACCCCGGTTTTATTTATAAAACACCAAATTTTCATCAGGGATACTCCAACCTC
* * * * * *
30997 GTTATTTTTGAGGGGATACTCCAACCCTGGTTTTATTTCTAAAACATTAATTTTTCATAATCGGG
66 GTTATTTTCGAAGGGACACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTC---ATCGGG
*
31062 GATACTCTAACCCCGTTATTTTCAA
128 GATACTCAAACCCCGTTATTTTCAA
* * * *
31087 GGGGATACTCCATCCCCGGTTTTATTTATAAAATACCAAATTTTCATAATTGGGGATACTCCAAC
1 GGGGACACTCCAACCCCGGTTTTATTTATAAAACACCAAATTTTCATCA---GGGATACTCCAAC
31152 TCTGATTTTA
Statistics
Matches: 188, Mismatches: 26, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
152 68 0.36
153 1 0.01
155 107 0.57
158 12 0.06
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.34
Consensus pattern (152 bp):
GGGGACACTCCAACCCCGGTTTTATTTATAAAACACCAAATTTTCATCAGGGATACTCCAACCTC
GTTATTTTCGAAGGGACACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCATCGGGGAT
ACTCAAACCCCGTTATTTTCAA
Found at i:31161 original size:51 final size:51
Alignment explanation
Indices: 31087--31204 Score: 141
Period size: 51 Copynumber: 2.3 Consensus size: 51
31077 TTATTTTCAA
* * * *
31087 GGGGATACTCCATCCCCGGTTTTATTTAT-AAAATACCAAATTTTC-ATAATT
1 GGGGATACTCCAACCCCGATTTTATTT-TCAAAACACC-AATTTTCTATAATC
* *
31138 GGGGATACTCCAACTCTGATTTTATTTTCAAAACACCAATTTTCTATAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATC
*
31189 AGGGATACTCCAACCC
1 GGGGATACTCCAACCC
31205 TGTTATTTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
50 8 0.14
51 49 0.86
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.34
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATC
Found at i:31163 original size:130 final size:131
Alignment explanation
Indices: 31008--31278 Score: 343
Period size: 130 Copynumber: 2.1 Consensus size: 131
30998 TTATTTTTGA
* ** * *
31008 GGGGATACTCCAACCCTGGTTTTA-TTTCTAAAACATTAATTTT-TCATAATCGGGGATACTCTA
1 GGGGATACTCCAACCCTGATTTTATTTTC-AAAACACCAATTTTCT-ATAATCAGGGATACTCCA
* * * * *
31071 ACCCCGTTA-TTTTCAAGGGGATACTCCATCCCCGGTTTTATTTATAAAATACCAAATTTT-CAT
64 ACCCCGTTATTTTTCAAGGGGATACTCCAACCCCGATTTTACTTACAAAACACC-AATTTTCCAT
*
31134 AATT
128 AATC
*
31138 GGGGATACTCCAACTCTGATTTTATTTTCAAAACACCAATTTTCTATAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCCTGATTTTATTTTCAAAACACCAATTTTCTATAATCAGGGATACTCCAAC
* * * *
31203 CCTGTTATTTTTCGAGGGGATACTCCAACCCCGATTTTACTTCCAAAACACCGATTTTCCATAAT
66 CCCGTTATTTTTCAAGGGGATACTCCAACCCCGATTTTACTTACAAAACACCAATTTTCCATAAT
31268 C
131 C
31269 GGGGATACTC
1 GGGGATACTC
31279 TAGCCCCATT
Statistics
Matches: 121, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
130 63 0.52
131 58 0.48
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (131 bp):
GGGGATACTCCAACCCTGATTTTATTTTCAAAACACCAATTTTCTATAATCAGGGATACTCCAAC
CCCGTTATTTTTCAAGGGGATACTCCAACCCCGATTTTACTTACAAAACACCAATTTTCCATAAT
C
Found at i:31301 original size:131 final size:129
Alignment explanation
Indices: 31008--31301 Score: 297
Period size: 131 Copynumber: 2.3 Consensus size: 129
30998 TTATTTTTGA
** * * ** * *
31008 GGGGATACTCCAAC-CCTGGTTTTATTTCTAAAACATTAATTTTTCATAATCGGGGATACTCTAA
1 GGGGATACTCCAACTCC-CATTTTATCTCCAAAACACCAA-TTTTCATAATCAGGGATACTCCAA
* * * * *
31072 CCCCGTTATTTTCAAGGGGATACTCCATCCCCGGTTTTATTTATAAAATACCAAATTTTCATAAT
64 CCCCGTTATTTTCAAGGGGATACTCCAACCCCGATTTTACTTACAAAACACCAAATTTTCATAAT
*
31137 T
129 C
** * *
31138 GGGGATACTCCAACTCTGATTTTATTTTCAAAACACCAATTTTCTATAATCAGGGATACTCCAAC
1 GGGGATACTCCAACTCCCATTTTATCTCCAAAACACCAATTTTC-ATAATCAGGGATACTCCAAC
* * * *
31203 CCTGTTATTTTTCGAGGGGATACTCCAACCCCGATTTTACTTCCAAAACACC-GATTTTCCATAA
65 CCCGTTA-TTTTCAAGGGGATACTCCAACCCCGATTTTACTTACAAAACACCAAATTTT-CATAA
31267 TC
128 TC
* *
31269 GGGGATACTCTAGC-CCCATTGTTATCTCCAAAA
1 GGGGATACTCCAACTCCCATT-TTATCTCCAAAA
31302 TATTAGATTT
Statistics
Matches: 135, Mismatches: 24, Indels: 9
0.80 0.14 0.05
Matches are distributed among these distances:
129 5 0.04
130 64 0.47
131 66 0.49
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (129 bp):
GGGGATACTCCAACTCCCATTTTATCTCCAAAACACCAATTTTCATAATCAGGGATACTCCAACC
CCGTTATTTTCAAGGGGATACTCCAACCCCGATTTTACTTACAAAACACCAAATTTTCATAATC
Found at i:38660 original size:33 final size:33
Alignment explanation
Indices: 38618--38683 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
38608 ACCGAGTTTC
38618 TTAAATTCATCAAGCATAGTGAGTATAGCATCG
1 TTAAATTCATCAAGCATAGTGAGTATAGCATCG
38651 TTAAATTCATCAAGCATAGTGAGTATAGCATCG
1 TTAAATTCATCAAGCATAGTGAGTATAGCATCG
38684 GATTCATGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (33 bp):
TTAAATTCATCAAGCATAGTGAGTATAGCATCG
Found at i:43082 original size:9 final size:9
Alignment explanation
Indices: 43064--43125 Score: 72
Period size: 9 Copynumber: 6.9 Consensus size: 9
43054 CATTCTTCTT
43064 AAAAAAAAC
1 AAAAAAAAC
*
43073 AAAAACAAC
1 AAAAAAAAC
43082 AAAAAAAAC
1 AAAAAAAAC
43091 -AAAAAAAC
1 AAAAAAAAC
* *
43099 AAAACAAAG
1 AAAAAAAAC
*
43108 AAAAAAAAG
1 AAAAAAAAC
43117 AGAAAAAAA
1 A-AAAAAAA
43126 AAGAAGAATC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
8 8 0.17
9 31 0.67
10 7 0.15
ACGTcount: A:0.85, C:0.10, G:0.05, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:43085 original size:8 final size:8
Alignment explanation
Indices: 43065--43114 Score: 64
Period size: 8 Copynumber: 5.9 Consensus size: 8
43055 ATTCTTCTTA
43065 AAAAAAAC
1 AAAAAAAC
43073 AAAAACAAC
1 AAAAA-AAC
43082 AAAAAAAAC
1 -AAAAAAAC
43091 AAAAAAAC
1 AAAAAAAC
*
43099 AAAACAAAG
1 AAAA-AAAC
43108 AAAAAAA
1 AAAAAAA
43115 AGAGAAAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
8 20 0.53
9 13 0.34
10 5 0.13
ACGTcount: A:0.86, C:0.12, G:0.02, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:43087 original size:18 final size:17
Alignment explanation
Indices: 43064--43114 Score: 75
Period size: 17 Copynumber: 2.9 Consensus size: 17
43054 CATTCTTCTT
43064 AAAAAAAACAAAAACAAC
1 AAAAAAAACAAAAA-AAC
43082 AAAAAAAACAAAAAAAC
1 AAAAAAAACAAAAAAAC
* *
43099 AAAACAAAGAAAAAAA
1 AAAAAAAACAAAAAAA
43115 AGAGAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
17 17 0.55
18 14 0.45
ACGTcount: A:0.86, C:0.12, G:0.02, T:0.00
Consensus pattern (17 bp):
AAAAAAAACAAAAAAAC
Found at i:43120 original size:11 final size:10
Alignment explanation
Indices: 43064--43130 Score: 53
Period size: 11 Copynumber: 6.1 Consensus size: 10
43054 CATTCTTCTT
*
43064 AAAAAAAACA
1 AAAAAAAAGA
*
43074 AAAACAACAAAA
1 AAAA-AA-AAGA
*
43086 AAAACAAAAAA
1 AAAA-AAAAGA
43097 ACAAAACAAAGA
1 A-AAAA-AAAGA
43109 AAAAAAAGAGA
1 AAAAAAA-AGA
43120 AAAAAAAAGA
1 AAAAAAAAGA
43130 A
1 A
43131 GAATCTGCTT
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
10 10 0.20
11 22 0.44
12 18 0.36
ACGTcount: A:0.85, C:0.09, G:0.06, T:0.00
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:43133 original size:13 final size:12
Alignment explanation
Indices: 43066--43127 Score: 70
Period size: 13 Copynumber: 4.8 Consensus size: 12
43056 TTCTTCTTAA
43066 AAAAAACAAAAAC
1 AAAAAA-AAAAAC
*
43079 AACAAAAAAAAC
1 AAAAAAAAAAAC
43091 AAAAAAACAAAAC
1 AAAAAAA-AAAAC
*
43104 AAAGAAAAAAAAG
1 AAA-AAAAAAAAC
43117 AGAAAAAAAAA
1 A-AAAAAAAAA
43128 GAAGAATCTG
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
12 12 0.28
13 25 0.58
14 6 0.14
ACGTcount: A:0.85, C:0.10, G:0.05, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:44265 original size:100 final size:100
Alignment explanation
Indices: 44108--44384 Score: 431
Period size: 100 Copynumber: 2.8 Consensus size: 100
44098 TCCACTTTTC
*
44108 AGTCCTTAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTC
1 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTC
* *
44173 CTCAAAGAGCAGGGCGCTCTCTCCTTTCGCCCTTT
66 CTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTT
* *
44208 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAACCCACACAAGTTGATGGCACTTCCCAGTC
1 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTC
*
44273 CTCAAAGAGTAGGACGCTCTCTCCTTTCACCCTTT
66 CTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTT
* *
44308 AGTCCTCAAAGAGCAGGATG------CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTCCCAGT
44367 CCTCAAAGAGCAGGACGC
65 CCTCAAAGAGCAGGACGC
44385 ATTTTCCTTT
Statistics
Matches: 165, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
94 28 0.17
95 23 0.14
100 114 0.69
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (100 bp):
AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTC
CTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTT
Found at i:44474 original size:55 final size:55
Alignment explanation
Indices: 44308--44786 Score: 586
Period size: 55 Copynumber: 8.4 Consensus size: 55
44298 TTCACCCTTT
* *
44308 AGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCT
1 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
*
44364 AGTCCTCAAAGAGCAGGACGCATTTTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCA-G--G-A--TGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
44425 AGTCCTTAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
44480 AGTCCTCAAAGAGCAGGATGCCTCTT-AAAGCCCACACAAGTTGGTGGCATTTTCT
1 AGTCCTCAAAGAGCAGGATGCCT-TTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
44535 AGTCCTCAAAGAGCAGGACGCCTCTT-AAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGATGCCT-TTCAAAGCCCACACAAGTTGGTGGCATTTTCC
* *
44590 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTC
1 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
* * **
44645 AGTCCTTAAAGAGCATGATGCTTTCTCTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCC
1 AGTCCTCAAAGAGCAGGATG----C-CTTT-CAAAGCCCACACAAGTTGGTGGCATTTTCC
* * * *
44706 AATCCTCAAAGAGCAGGACACCTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTT-T
1 AGTCCTCAAAGAGCAGG--A---TGCC-TTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
*
44767 AGTCCTCAAAGAGCAAGATG
1 AGTCCTCAAAGAGCAGGATG
44787 TACTTTATTT
Statistics
Matches: 375, Mismatches: 27, Indels: 42
0.84 0.06 0.09
Matches are distributed among these distances:
54 2 0.01
55 207 0.55
56 18 0.05
57 2 0.01
58 1 0.00
59 3 0.01
60 6 0.02
61 99 0.26
62 35 0.09
63 1 0.00
66 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
Found at i:44615 original size:165 final size:168
Alignment explanation
Indices: 44308--44781 Score: 668
Period size: 165 Copynumber: 2.8 Consensus size: 168
44298 TTCACCCTTT
*
44308 AGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAA
1 AGTCCTCAAAGAGCAGGATGCCTCTTAAAGCCCACACAAGTTGGTGGCA-TTTTCTAGTCCTCAA
* *
44373 AGAGCAGGACGCATTTTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTTAAAGAG
65 AGAGCAGGACGC---CTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAG
*
44438 CAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
127 CAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
44480 AGTCCTCAAAGAGCAGGATGCCTCTTAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAA
1 AGTCCTCAAAGAGCAGGATGCCTCTTAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAA
44545 GAGCAGGACGCCT-C-TT-AAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGG
66 GAGCAGGACGCCTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGG
*
44607 ACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTC
131 ACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
* * ** * *
44645 AGTCCTTAAAGAGCATGATGCTTTCTCTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCAATC
1 AGTCCTCAAAGAGCAGGATGC---CTC-TT--AAAGCCCACACAAGTTGGTGGCATTTTCTAGTC
* * *
44710 CTCAAAGAGCAGGACACCTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTT-TAGTCCTC
60 CTCAAAGAGCAGGACGCC--TCC-TTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTC
44774 AAAGAGCA
121 AAAGAGCA
44782 AGATGTACTT
Statistics
Matches: 275, Mismatches: 14, Indels: 21
0.89 0.05 0.07
Matches are distributed among these distances:
165 100 0.36
166 2 0.01
167 1 0.00
168 4 0.01
169 2 0.01
171 73 0.27
172 48 0.17
173 1 0.00
174 1 0.00
176 2 0.01
177 37 0.13
178 4 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (168 bp):
AGTCCTCAAAGAGCAGGATGCCTCTTAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAA
GAGCAGGACGCCTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGG
ACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
Found at i:48111 original size:20 final size:19
Alignment explanation
Indices: 48084--48137 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
48074 AATTTGCTTG
48084 CATGTATCGATACAAAGA-T
1 CATGTATCGATACAAA-ACT
48103 CAGTGTATCGATACAAAACT
1 CA-TGTATCGATACAAAACT
*
48123 TATGTATCGATACAA
1 CATGTATCGATACAA
48138 TGTATCGATA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.28
Consensus pattern (19 bp):
CATGTATCGATACAAAACT
Found at i:48142 original size:13 final size:13
Alignment explanation
Indices: 48124--48150 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
48114 TACAAAACTT
48124 ATGTATCGATACA
1 ATGTATCGATACA
48137 ATGTATCGATACA
1 ATGTATCGATACA
48150 A
1 A
48151 CACTTTATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:48147 original size:32 final size:33
Alignment explanation
Indices: 48106--48170 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
48096 CAAAGATCAG
48106 TGTATCGATACAAAAC-TTATGTATCGATACAA
1 TGTATCGATACAAAACTTTATGTATCGATACAA
*
48138 TGTATCGATACAACACTTTATGTATCGATACAA
1 TGTATCGATACAAAACTTTATGTATCGATACAA
48171 ATCGTTGAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 15 0.48
33 16 0.52
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.32
Consensus pattern (33 bp):
TGTATCGATACAAAACTTTATGTATCGATACAA
Found at i:49050 original size:67 final size:68
Alignment explanation
Indices: 48928--49054 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
48918 CGTCATTTTT
* * *
48928 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
48993 AGA
66 AGA
* * * *
48996 AAAG-TGATAAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGA
49055 GAAAAAGGAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.24
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
AGA
Found at i:49108 original size:55 final size:52
Alignment explanation
Indices: 49004--49341 Score: 265
Period size: 49 Copynumber: 6.9 Consensus size: 52
48994 GAAAAGTGAT
* * * * * * **
49004 AAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATG-G-A
* * *
49058 AAAGGATGTCAATGTGCTGATTCAAGGCTAGCTACATTGAACTTAAAGATGGA
1 AAAGG-TGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* *
49111 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* *
49154 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA---A
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * *
49203 GAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGAAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* *
49246 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * *
49296 -AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAG
49342 GTAGATGCCA
Statistics
Matches: 235, Mismatches: 33, Indels: 37
0.77 0.11 0.12
Matches are distributed among these distances:
43 74 0.31
44 2 0.01
46 1 0.00
48 1 0.00
49 79 0.34
51 1 0.00
52 31 0.13
53 6 0.03
54 5 0.02
55 35 0.15
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (52 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
Found at i:49172 original size:43 final size:43
Alignment explanation
Indices: 49111--49343 Score: 286
Period size: 43 Copynumber: 5.1 Consensus size: 43
49101 TAAAGATGGA
49111 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
49154 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
49197 AAAGAAGAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGAACTT
1 -----A-AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
49246 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
49289 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
49338 AAAGGT
1 AAAGGT
49344 AGATGCCACT
Statistics
Matches: 163, Mismatches: 15, Indels: 24
0.81 0.07 0.12
Matches are distributed among these distances:
43 83 0.51
44 1 0.01
45 1 0.01
47 1 0.01
48 1 0.01
49 76 0.47
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:49227 original size:49 final size:48
Alignment explanation
Indices: 49057--49341 Score: 311
Period size: 49 Copynumber: 6.0 Consensus size: 48
49047 AAAGATGAGA
* * * *
49057 AAAAGGATGTCAATGTGCTGATTCAAGGCTAGCTACATTGAACTTAAAGATGG
1 AAAAGG-TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT-AA-A--G
*
49110 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----
1 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
*
49154 -AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
1 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
* * * *
49201 AAGAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGAACTT----
1 AA-AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
*
49246 -AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
1 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
* * *
49293 ATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 A-AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
49342 GTAGATGCCA
Statistics
Matches: 199, Mismatches: 21, Indels: 28
0.80 0.08 0.11
Matches are distributed among these distances:
43 78 0.39
44 1 0.01
48 1 0.01
49 80 0.40
52 33 0.17
53 6 0.03
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (48 bp):
AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
Found at i:49247 original size:92 final size:92
Alignment explanation
Indices: 49058--49343 Score: 464
Period size: 92 Copynumber: 3.1 Consensus size: 92
49048 AAGATGAGAA
* * * *
49058 AAAGGATGTCAATGTGCTGATTCAAGGCTAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA---AGAAGGTGCCAAT
*
49123 ATGCTGATTCAAGGCCAGCTATATTGGACTT
62 ATGCTGATTCAAGGCCAGCGATATTGGACTT
49154 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
* *
49219 TGATTCAAGGCTAGCGATATTGAACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
*
49246 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
49311 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
49338 AAAGGT
1 AAAGGT
49344 AGATGCCACT
Statistics
Matches: 180, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
92 135 0.75
95 40 0.22
96 5 0.03
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.26
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
TGATTCAAGGCCAGCGATATTGGACTT
Found at i:49570 original size:33 final size:33
Alignment explanation
Indices: 49355--49570 Score: 303
Period size: 33 Copynumber: 6.6 Consensus size: 33
49345 GATGCCACTA
*
49355 ACTTGTGTGGGCTTTTGAAGAAGG-TTGCCACCG
1 ACTTGTGTGGGCTTTAGAA-AAGGTTTGCCACCG
* ** *
49388 ACTTGTGTGGCCTTTAG-AGGGGGTTGCCACC-
1 ACTTGTGTGGGCTTTAGAAAAGGTTTGCCACCG
*
49419 ACTTGTGTGGGCTTTAGAGAAGGTTTGCCACCG
1 ACTTGTGTGGGCTTTAGAAAAGGTTTGCCACCG
* * *
49452 ACTTGTGTGGGTTTTAGAGACGGTTTGCCACCG
1 ACTTGTGTGGGCTTTAGAAAAGGTTTGCCACCG
*
49485 ACTTGTGTGGGCTTTAAAAAAGGTTTGCCACCG
1 ACTTGTGTGGGCTTTAGAAAAGGTTTGCCACCG
*
49518 ACTTGTGTGGGCTTTAGAAAAGGTTTGCCACTG
1 ACTTGTGTGGGCTTTAGAAAAGGTTTGCCACCG
49551 ACTTGTGTGGGCTTTAGAAA
1 ACTTGTGTGGGCTTTAGAAA
49571 GGGTGAAAGA
Statistics
Matches: 163, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
31 18 0.11
32 19 0.12
33 126 0.77
ACGTcount: A:0.19, C:0.18, G:0.32, T:0.31
Consensus pattern (33 bp):
ACTTGTGTGGGCTTTAGAAAAGGTTTGCCACCG
Found at i:49634 original size:68 final size:72
Alignment explanation
Indices: 49556--49709 Score: 185
Period size: 68 Copynumber: 2.2 Consensus size: 72
49546 CACTGACTTG
** *
49556 TGTGGGCTTTAGAAAGGGTGAAAGA-TGCAAC-GAAGTTGT-GGACTT-AAAAGAACAAG-GTGC
1 TGTGGGCTTTAGAAAGGGAAAAAGAGTGCAACAG-AGTTGTGGGACTTAAAAAGAAAAAGAGTGC
49616 CACGGAGT
65 CACGGAGT
* **
49624 TGTGGGCTTTA-AAAGGGAAAAAGAGTGCCACAGAGTTGTGGGTTTTAAAAAGAAAAAGAGTGCC
1 TGTGGGCTTTAGAAAGGGAAAAAGAGTGCAACAGAGTTGTGGGACTTAAAAAGAAAAAGAGTGCC
49688 ACGGAGT
66 ACGGAGT
* *
49695 TGTGGACTTTGGAAA
1 TGTGGGCTTTAGAAA
49710 AGATGCCACT
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
67 11 0.15
68 22 0.31
69 5 0.07
70 10 0.14
71 21 0.29
72 3 0.04
ACGTcount: A:0.34, C:0.10, G:0.33, T:0.22
Consensus pattern (72 bp):
TGTGGGCTTTAGAAAGGGAAAAAGAGTGCAACAGAGTTGTGGGACTTAAAAAGAAAAAGAGTGCC
ACGGAGT
Found at i:49660 original size:36 final size:35
Alignment explanation
Indices: 49556--49704 Score: 153
Period size: 35 Copynumber: 4.3 Consensus size: 35
49546 CACTGACTTG
** * *
49556 TGTGGGCTTTAGAAAGGGTGAAAGA-TGCAACGAAGT
1 TGTGGGCTTTA-AAA-GGAAAAAGAGTGCCACGGAGT
* *
49592 TGTGGAC-TTAAAA-GAACAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
*
49624 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACAGAGT
1 TGTGGGCTTTAAAA-GGAAAAAGAGTGCCACGGAGT
* *
49660 TGTGGGTTTTAAAAAGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
*
49695 TGTGGACTTT
1 TGTGGGCTTT
49705 GGAAAAGATG
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
32 19 0.20
33 6 0.06
34 3 0.03
35 36 0.38
36 30 0.32
ACGTcount: A:0.34, C:0.11, G:0.33, T:0.23
Consensus pattern (35 bp):
TGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
Found at i:49726 original size:29 final size:29
Alignment explanation
Indices: 49675--49762 Score: 122
Period size: 29 Copynumber: 3.0 Consensus size: 29
49665 GTTTTAAAAA
* * *
49675 GAAAAAGAGTGCCACGGAGTTGTGGACTTT
1 GAAAAAGA-TGCCACTGACTTGTGGGCTTT
*
49705 GGAAAAGATGCCACTGACTTGTGGGCTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTT
*
49734 GAAAAAGATGCCACTGACTTATGGGCTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTT
49763 TGAAGGGTGA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 45 0.87
30 7 0.13
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (29 bp):
GAAAAAGATGCCACTGACTTGTGGGCTTT
Found at i:51232 original size:29 final size:27
Alignment explanation
Indices: 51199--51259 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 27
51189 AATCTGGACC
51199 CTTTTTGTTGTTGTTGTTTTTTTTCTTTT
1 CTTTTTGTT-TTGTT-TTTTTTTTCTTTT
51228 CTTTTTTGTTTTGTTTTTTTTTTCTTTT
1 C-TTTTTGTTTTGTTTTTTTTTTCTTTT
51256 -TTTT
1 CTTTT
51260 GCGGAGGACG
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
26 4 0.13
28 13 0.42
29 6 0.19
30 8 0.26
ACGTcount: A:0.00, C:0.07, G:0.10, T:0.84
Consensus pattern (27 bp):
CTTTTTGTTTTGTTTTTTTTTTCTTTT
Found at i:51234 original size:12 final size:11
Alignment explanation
Indices: 51217--51259 Score: 59
Period size: 12 Copynumber: 3.7 Consensus size: 11
51207 TGTTGTTGTT
51217 TTTTTTCTTTTC
1 TTTTTT-TTTTC
*
51229 TTTTTTGTTTTG
1 TTTTTT-TTTTC
51241 TTTTTTTTTTC
1 TTTTTTTTTTC
51252 TTTTTTTT
1 TTTTTTTT
51260 GCGGAGGACG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
11 12 0.43
12 16 0.57
ACGTcount: A:0.00, C:0.07, G:0.05, T:0.88
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:51244 original size:23 final size:24
Alignment explanation
Indices: 51209--51257 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
51199 CTTTTTGTTG
*
51209 TTGTTGTTTTTTTTCTTTTCTTTT
1 TTGTTGTTGTTTTTCTTTTCTTTT
*
51233 TTGTT-TTGTTTTTTTTTTCTTTT
1 TTGTTGTTGTTTTTCTTTTCTTTT
51256 TT
1 TT
51258 TTGCGGAGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 18 0.78
24 5 0.22
ACGTcount: A:0.00, C:0.06, G:0.08, T:0.86
Consensus pattern (24 bp):
TTGTTGTTGTTTTTCTTTTCTTTT
Found at i:51258 original size:24 final size:26
Alignment explanation
Indices: 51199--51258 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
51189 AATCTGGACC
51199 CTTTTTGTTGTTGTTGTTTTTTTTCTT
1 CTTTTT-TTGTTGTTGTTTTTTTTCTT
*
51226 TTCTTTTTTGTT-TTGTTTTTTTT-TT
1 CT-TTTTTTGTTGTTGTTTTTTTTCTT
51251 CTTTTTTT
1 CTTTTTTT
51259 TGCGGAGGAC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 6 0.20
25 3 0.10
26 11 0.37
27 6 0.20
28 4 0.13
ACGTcount: A:0.00, C:0.07, G:0.10, T:0.83
Consensus pattern (26 bp):
CTTTTTTTGTTGTTGTTTTTTTTCTT
Found at i:68286 original size:52 final size:51
Alignment explanation
Indices: 68160--68339 Score: 220
Period size: 51 Copynumber: 3.5 Consensus size: 51
68150 AAATTTCTAT
* * * *
68160 ATTTTTCAT-TTCGGGGATACTCCAA-TCCCGGTTTCATTTCCAAAACATCA
1 ATTTTTCATAATCGGGGATACTCCAACT-CCGATTTTATTTCCAAAACACCA
* * * *
68210 ATTTTTCTTAATCGGGGATACTCCAACTCCGATTTTATTTCTAAAGCACCC
1 ATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCA
* *
68261 ATTTTTCCATAATCGAGGATACTCCAACTCCGATTTTATTTCCAAAACACCG
1 ATTTTT-CATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCA
* *
68313 ACTTTTCACAATCGGGGATACTCCAAC
1 ATTTTTCATAATCGGGGATACTCCAAC
68340 CCTGTTATTT
Statistics
Matches: 111, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
50 8 0.07
51 57 0.51
52 46 0.41
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.34
Consensus pattern (51 bp):
ATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCA
Found at i:68420 original size:48 final size:48
Alignment explanation
Indices: 68354--68465 Score: 179
Period size: 48 Copynumber: 2.3 Consensus size: 48
68344 TTATTTTCGA
* * *
68354 GGGGACACTCCAAACCCGGTTTTATTTCTAAAACATCAATTTTTCATC
1 GGGGATACTCCAACCCCGGTTCTATTTCTAAAACATCAATTTTTCATC
*
68402 GGGGATACTCCAACCCCGGTTCTATTTCTAAAACGTCAATTTTTCATC
1 GGGGATACTCCAACCCCGGTTCTATTTCTAAAACATCAATTTTTCATC
*
68450 GAGGATACTCCAACCC
1 GGGGATACTCCAACCC
68466 TGTTATTTTC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (48 bp):
GGGGATACTCCAACCCCGGTTCTATTTCTAAAACATCAATTTTTCATC
Found at i:68552 original size:124 final size:128
Alignment explanation
Indices: 68223--68552 Score: 413
Period size: 124 Copynumber: 2.6 Consensus size: 128
68213 TTTCTTAATC
* * * * * *
68223 GGGGATACTCCAACTCCGATTTTATTTCTAAAGCACCCATTTTTCCATAATCGAGGATACTCCAA
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTT-CATAATCGGGGATACTCCAA
* * *
68288 CTCCGATTTTATTTCCAAAACACCGACTTTTCACAATCGGGGATACTCCAACCCTGTTATTTTCG
65 CCCCG--TTTATTTCCAAAACACCGAATTTTCACAATCGAGGATACTCCAACCCTGTTATTTTCG
68353 A
128 A
* *
68354 GGGGACACTCCAAACCCGGTTTTATTTCTAAAACATCAATTTTTC---ATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAAC
* ** *
68416 CCCGGTTCTATTTCTAAAACGTC-AATTTT-TC-ATCGAGGATACTCCAACCCTGTTATTTTCGA
66 CCC-GTT-TATTTCCAAAACACCGAATTTTCACAATCGAGGATACTCCAACCCTGTTATTTTCGA
* *
68478 GGGGATACTCCAACCCCGGTTTTATTTCTAAAATATTAATTTTTCATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAAC
68543 CCCG-TTATTT
66 CCCGTTTATTT
68553 TCGAAGGGAT
Statistics
Matches: 175, Mismatches: 19, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
124 76 0.43
125 2 0.01
126 8 0.05
127 50 0.29
128 1 0.01
130 1 0.01
131 37 0.21
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (128 bp):
GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAAC
CCCGTTTATTTCCAAAACACCGAATTTTCACAATCGAGGATACTCCAACCCTGTTATTTTCGA
Found at i:68574 original size:79 final size:79
Alignment explanation
Indices: 68403--68621 Score: 327
Period size: 79 Copynumber: 2.8 Consensus size: 79
68393 TTTTTCATCG
* ** *
68403 GGGATACTCCAACCCCGGTTCTATTTCTAAAACGTCAATTTTTC---ATCGAGGATACTCCAACC
1 GGGATACTCCAACCCCGGTTTTATTTCTAAAATATCAATTTTTCATAATCGGGGATACTCCAACC
* *
68465 CTGTTATTTTCGAG
66 CCGTTATTTTCGAA
*
68479 GGGATACTCCAACCCCGGTTTTATTTCTAAAATATTAATTTTTCATAATCGGGGATACTCCAACC
1 GGGATACTCCAACCCCGGTTTTATTTCTAAAATATCAATTTTTCATAATCGGGGATACTCCAACC
68544 CCGTTATTTTCGAA
66 CCGTTATTTTCGAA
* * *
68558 GGGATACTCCAACCCCGATTTTATTTCTAAAATACCAAATTTTCATAATCGGGGATACTCCAAC
1 GGGATACTCCAACCCCGGTTTTATTTCTAAAATATCAATTTTTCATAATCGGGGATACTCCAAC
68622 TCCGATTTTA
Statistics
Matches: 129, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
76 40 0.31
79 89 0.69
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (79 bp):
GGGATACTCCAACCCCGGTTTTATTTCTAAAATATCAATTTTTCATAATCGGGGATACTCCAACC
CCGTTATTTTCGAA
Found at i:68634 original size:130 final size:131
Alignment explanation
Indices: 68478--68784 Score: 361
Period size: 131 Copynumber: 2.3 Consensus size: 131
68468 TTATTTTCGA
* * *
68478 GGGGATACTCCAACCCCGGTTTTATTTCTAAAATATTAATTTTTC-ATAATCGGGGATACTCCAA
1 GGGGATACTCCAA-CCCGATTTTATTTCTAAAAAATTAATTTTTCTATAATCAGGGATACTCCAA
* * *
68542 CCCCGTTA-TTTTCGAAGGGATACTCCAACCCCGATTTTATTTCTAAAATACCAAATTTTCATAA
65 CCCCGTTATTTTTCGAAGGGATACTCCAACCCCGATTTTACTTCCAAAACACCAAATTTTCATAA
68606 TC
130 TC
* * **
68608 GGGGATACTCCAACTCCGATTTTATTT-TCAGAACACCAA-TTTTCTATAATCAGGGATACTCCA
1 GGGGATACTCCAAC-CCGATTTTATTTCT-AAAAAATTAATTTTTCTATAATCAGGGATACTCCA
* * * * * *
68671 ACTCTGTTATTTTTCGAGGGGATACTTCAACCCCGATTTTACTTCCAAAACACCGATTTTTCATA
64 ACCCCGTTATTTTTCGAAGGGATACTCCAACCCCGATTTTACTTCCAAAACACCAAATTTTCATA
68736 ATC
129 ATC
* * * *
68739 GGGGATACTCTAACCCCATTGTTATCTCCAAAAAATTAGATTTTTC
1 GGGGATACTCCAACCCGATT-TTATTTCTAAAAAATTA-ATTTTTC
68785 GTAGAGAGAT
Statistics
Matches: 146, Mismatches: 23, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
129 7 0.05
130 59 0.40
131 74 0.51
132 1 0.01
133 5 0.03
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (131 bp):
GGGGATACTCCAACCCGATTTTATTTCTAAAAAATTAATTTTTCTATAATCAGGGATACTCCAAC
CCCGTTATTTTTCGAAGGGATACTCCAACCCCGATTTTACTTCCAAAACACCAAATTTTCATAAT
C
Found at i:68673 original size:51 final size:51
Alignment explanation
Indices: 68557--68674 Score: 168
Period size: 51 Copynumber: 2.3 Consensus size: 51
68547 TTATTTTCGA
* *
68557 AGGGATACTCCAACCCCGATTTTATTTCTAAAATACCAAATTTTCATAATC
1 AGGGATACTCCAACTCCGATTTTATTTCTAAAACACCAAATTTTCATAATC
* *
68608 GGGGATACTCCAACTCCGATTTTATTT-TCAGAACACC-AATTTTCTATAATC
1 AGGGATACTCCAACTCCGATTTTATTTCT-AAAACACCAAATTTTC-ATAATC
68659 AGGGATACTCCAACTC
1 AGGGATACTCCAACTC
68675 TGTTATTTTT
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
50 8 0.13
51 52 0.87
ACGTcount: A:0.32, C:0.25, G:0.11, T:0.32
Consensus pattern (51 bp):
AGGGATACTCCAACTCCGATTTTATTTCTAAAACACCAAATTTTCATAATC
Found at i:70591 original size:39 final size:40
Alignment explanation
Indices: 70540--70639 Score: 132
Period size: 40 Copynumber: 2.5 Consensus size: 40
70530 TTACATTTAT
** **
70540 GTGG-TTGGCATAGCCACCCAACTATTTATTT-ATTTTTC
1 GTGGATTGGCATAGCCACCCAACTACATATTTAAAATTTC
* *
70578 GTGGATTGACATAGCCACCCAACTGCATATTTAAAATTTC
1 GTGGATTGGCATAGCCACCCAACTACATATTTAAAATTTC
70618 GTGGATTGGCATAGCCACCCAA
1 GTGGATTGGCATAGCCACCCAA
70640 ATTTTAACAA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
38 4 0.08
39 23 0.43
40 26 0.49
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (40 bp):
GTGGATTGGCATAGCCACCCAACTACATATTTAAAATTTC
Found at i:75321 original size:39 final size:39
Alignment explanation
Indices: 75255--75331 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
75245 GTTGTTTTCT
*
75255 TTTATTTACATTTATGTGGTTGGCATAGCCACCCAACTG
1 TTTATTTACATTTATGTGGTTGACATAGCCACCCAACTG
* *
75294 TTTATTTA-TTTTTTGTGGATTGACATAGCCACCCAACT
1 TTTATTTACATTTATGTGG-TTGACATAGCCACCCAACT
75332 ACATATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 8 0.24
39 26 0.76
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.42
Consensus pattern (39 bp):
TTTATTTACATTTATGTGGTTGACATAGCCACCCAACTG
Found at i:76225 original size:28 final size:28
Alignment explanation
Indices: 76137--76225 Score: 67
Period size: 28 Copynumber: 3.1 Consensus size: 28
76127 AAATTAATTA
*
76137 TAATATTAGTTATAATACTAATTATTT-TATT
1 TAATA-TAATTATAAT--TAATT-TTTATATT
* * *
76168 TAATTTAATTGA-AAATAATTTTAAGT-TT
1 TAATATAATT-ATAATTAATTTTTA-TATT
76196 TAATATAATTATAATTAATTTTTATATT
1 TAATATAATTATAATTAATTTTTATATT
76224 TA
1 TA
76226 TAAAAAACAT
Statistics
Matches: 46, Mismatches: 7, Indels: 13
0.70 0.11 0.20
Matches are distributed among these distances:
27 4 0.09
28 30 0.65
29 1 0.02
30 6 0.13
31 5 0.11
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (28 bp):
TAATATAATTATAATTAATTTTTATATT
Found at i:76553 original size:13 final size:13
Alignment explanation
Indices: 76535--76560 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76525 ACATGCATTA
76535 TTTTTAAGAATGT
1 TTTTTAAGAATGT
76548 TTTTTAAGAATGT
1 TTTTTAAGAATGT
76561 ATTAATTGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTTTTAAGAATGT
Found at i:77221 original size:27 final size:27
Alignment explanation
Indices: 77191--77243 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
77181 TATCAAAATT
77191 TATA-AAATAAAAAGTATTGAAATATAA
1 TATACAAATAAAAAGTATT-AAATATAA
* * *
77218 TATACATATATAAATTATTAAATATA
1 TATACAAATAAAAAGTATTAAATATA
77244 TTATTTTCTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 11 0.50
28 11 0.50
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (27 bp):
TATACAAATAAAAAGTATTAAATATAA
Found at i:77578 original size:19 final size:19
Alignment explanation
Indices: 77554--77596 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
77544 CTTTCATAAA
77554 AGGTTTCAATGGATTAGAT
1 AGGTTTCAATGGATTAGAT
77573 AGGTTTCAATGGATTAGAT
1 AGGTTTCAATGGATTAGAT
77592 -GGTTT
1 AGGTTT
77597 TTCAACGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.28, C:0.05, G:0.28, T:0.40
Consensus pattern (19 bp):
AGGTTTCAATGGATTAGAT
Found at i:78511 original size:16 final size:16
Alignment explanation
Indices: 78490--78531 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
78480 TAAATTTAAT
*
78490 TGACCCGAATCTTG-AA
1 TGACCCGAA-CCTGAAA
78506 TGACCCGAACCTGAAA
1 TGACCCGAACCTGAAA
78522 TGACCCGAAC
1 TGACCCGAAC
78532 TCGAAAGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 3 0.12
16 21 0.88
ACGTcount: A:0.33, C:0.31, G:0.19, T:0.17
Consensus pattern (16 bp):
TGACCCGAACCTGAAA
Found at i:78537 original size:16 final size:16
Alignment explanation
Indices: 78490--78542 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
78480 TAAATTTAAT
*
78490 TGACCCGAATCTTG-AA
1 TGACCCGAA-CTCGAAA
78506 TGACCCGAAC-CTGAAA
1 TGACCCGAACTC-GAAA
78522 TGACCCGAACTCGAAA
1 TGACCCGAACTCGAAA
78538 GTGAC
1 -TGAC
78543 TCAAAAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
15 2 0.06
16 25 0.78
17 5 0.16
ACGTcount: A:0.34, C:0.28, G:0.21, T:0.17
Consensus pattern (16 bp):
TGACCCGAACTCGAAA
Found at i:81360 original size:16 final size:17
Alignment explanation
Indices: 81328--81361 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
81318 TCCGAGTCTT
81328 AGATCTTTACTTTTACC
1 AGATCTTTACTTTTACC
81345 AGATCTTTAC-TTTACC
1 AGATCTTTACTTTTACC
81361 A
1 A
81362 AATTCTTCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (17 bp):
AGATCTTTACTTTTACC
Found at i:81368 original size:17 final size:17
Alignment explanation
Indices: 81330--81364 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
81320 CGAGTCTTAG
*
81330 ATCTTTACTTTTACCAG
1 ATCTTTACTTTTACCAA
81347 ATCTTTAC-TTTACCAA
1 ATCTTTACTTTTACCAA
81363 AT
1 AT
81365 TCTTCAGATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.29, C:0.23, G:0.03, T:0.46
Consensus pattern (17 bp):
ATCTTTACTTTTACCAA
Found at i:82075 original size:8 final size:8
Alignment explanation
Indices: 82064--82088 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
82054 ATCTAAAAAT
82064 ATTTTAAA
1 ATTTTAAA
82072 ATTTTAAA
1 ATTTTAAA
82080 ATTTTAAA
1 ATTTTAAA
82088 A
1 A
82089 AATTTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
ATTTTAAA
Found at i:83732 original size:123 final size:123
Alignment explanation
Indices: 83578--83832 Score: 483
Period size: 123 Copynumber: 2.1 Consensus size: 123
83568 ATTTTTTTTA
83578 TTATGGGTTCGAGGACTTGGATTAGTCGATTAGTCTAATTAAGAGTTAGGATTTGGGTTGGGGGA
1 TTATGGGTTCGAGGACTTGGATTAGTCGATTAGTCTAATTAAGAGTTAGGATTTGGGTTGGGGGA
83643 GTTATATTAGCCAACTATGCCATTTAGGCTTACGTATTTTGGATTATAGGTTATTGGG
66 GTTATATTAGCCAACTATGCCATTTAGGCTTACGTATTTTGGATTATAGGTTATTGGG
*
83701 TTATGGGTTGGAGGACTTGGATTAGTCGATTAGTCTAATTAAGAGTTAGGATTTGGGTTGGGGGA
1 TTATGGGTTCGAGGACTTGGATTAGTCGATTAGTCTAATTAAGAGTTAGGATTTGGGTTGGGGGA
* *
83766 TTTATATTAGCCAATTATGCCATTTAGGCTTACGTATTTTGGATTATAGGTTATTGGG
66 GTTATATTAGCCAACTATGCCATTTAGGCTTACGTATTTTGGATTATAGGTTATTGGG
83824 TTATGGGTT
1 TTATGGGTT
83833 TTGATTAAGA
Statistics
Matches: 129, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 129 1.00
ACGTcount: A:0.23, C:0.08, G:0.29, T:0.40
Consensus pattern (123 bp):
TTATGGGTTCGAGGACTTGGATTAGTCGATTAGTCTAATTAAGAGTTAGGATTTGGGTTGGGGGA
GTTATATTAGCCAACTATGCCATTTAGGCTTACGTATTTTGGATTATAGGTTATTGGG
Found at i:85530 original size:20 final size:20
Alignment explanation
Indices: 85507--85560 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
85497 TACATAAGTA
*
85507 AATGTATCGATACATTTTG-C
1 AATGTAT-GATACATTTGGCC
*
85527 AATGTATGAATATATTTGGCC
1 AATGTATG-ATACATTTGGCC
85548 AATGTATGGATAC
1 AATGTAT-GATAC
85561 TGTAGACACC
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 1 0.04
20 15 0.54
21 11 0.39
22 1 0.04
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (20 bp):
AATGTATGATACATTTGGCC
Found at i:85789 original size:20 final size:20
Alignment explanation
Indices: 85761--85835 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
85751 TCATACCCTG
85761 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
85781 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
85801 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
85821 ATGTATCGATACATT
1 ATGTATCGATACATT
85836 ATGTCTTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:85828 original size:40 final size:39
Alignment explanation
Indices: 85761--85838 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
85751 TCATACCCTG
* *
85761 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
85801 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
85839 TCTTTTTACC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:94358 original size:27 final size:27
Alignment explanation
Indices: 94291--94838 Score: 810
Period size: 27 Copynumber: 20.0 Consensus size: 27
94281 TGGCATTTCT
* *
94291 TTTTGAAGTCCACAACTCTGTGGCATCCT
1 TTTT-AAGTCCACAACTCCGTGGCA-CCC
* *
94320 TTTTAAGTCCACAATTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
* *
94347 TTTTAAATCCACAACTCCGTGGCACTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
94374 TTTTAAAGTCCACAACTCCGTGGCACTC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
94402 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
94430 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
** *
94457 TTCAAAGTCCACAACTCCGTGGCACTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
94484 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
*
94512 TTTTAAGTCCACAACTCTGTGGCA-CC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
94538 TTTCAAAGTCCACAACTCCGTGGCACCC
1 TTT-TAAGTCCACAACTCCGTGGCACCC
* * *
94566 TTTTAAGTCCACAACTCCGTAGCGCTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
94593 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
*
94621 TCTTTAAGTCCACAACTCCGTGGCACTC
1 T-TTTAAGTCCACAACTCCGTGGCACCC
94649 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
94676 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
94703 TTTTAAGTCCACAACTCCGTGGCATCCC
1 TTTTAAGTCCACAACTCCGTGGCA-CCC
* *
94731 TTTTAAGACCACAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
94758 TTTTAAGTCCGCAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
* *
94785 TTTTAAGTCCACAACTTCGTGGCATCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
94812 TTTTAAATCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
94839 ATTTCAAAGC
Statistics
Matches: 475, Mismatches: 37, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
26 5 0.01
27 291 0.61
28 172 0.36
29 7 0.01
ACGTcount: A:0.23, C:0.34, G:0.15, T:0.28
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCGTGGCACCC
Found at i:94483 original size:82 final size:81
Alignment explanation
Indices: 94296--94838 Score: 795
Period size: 82 Copynumber: 6.6 Consensus size: 81
94286 TTTCTTTTTG
* * * *
94296 AAGTCCACAACTCTGTGGCA-TCCTTTTTAAGTCCACAATTCTGTGGCACCCTTTTAAATCCACA
1 AAGTCCACAACTCCGTGGCACT-C-TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACA
*
94360 ACTCCGTGGCACTCTTTTA
64 ACTCCGTGGCAC-CCTTTA
94379 AAGTCCACAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAA
1 AAGTCCACAACTCCGTGGCACTCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAA
*
94444 CTCCGTGGCACCCTTCA
65 CTCCGTGGCACCCTTTA
94461 AAGTCCACAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAA
1 AAGTCCACAACTCCGTGGCACTCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAA
*
94526 CTCTGTGGCA-CCTTTCA
65 CTCCGTGGCACCCTTT-A
* * * *
94543 AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTAGCGCTCTTTTAAAGTCCACAA
1 AAGTCCACAACTCCGTGGCACTCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAA
*
94608 CTCCGTGGCACCCTCTTT
65 CTCCGTGGCACCCT-TTA
94626 AAGTCCACAACTCCGTGGCACTCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAAC
1 AAGTCCACAACTCCGTGGCACTCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAAC
*
94691 TCCGTGGCACCCTTTT
66 TCCGTGGCACCCTTTA
* * * *
94707 AAGTCCACAACTCCGTGGCATCCCTTTTAAGACCACAACTCTGTGGCACCCTTTTAAGTCCGCAA
1 AAGTCCACAACTCCGTGGCA-CTCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAA
*
94772 CTCCGTGGCACCCTTTT
65 CTCCGTGGCACCCTTTA
* *
94789 AAGTCCACAACTTCGTGGCA-TCCTTTTAAATCCACAACTCCGTGGCACCC
1 AAGTCCACAACTCCGTGGCACT-CTTTTAAGTCCACAACTCCGTGGCACCC
94839 ATTTCAAAGC
Statistics
Matches: 425, Mismatches: 27, Indels: 18
0.90 0.06 0.04
Matches are distributed among these distances:
81 76 0.18
82 228 0.54
83 118 0.28
84 3 0.01
ACGTcount: A:0.24, C:0.35, G:0.15, T:0.27
Consensus pattern (81 bp):
AAGTCCACAACTCCGTGGCACTCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAAC
TCCGTGGCACCCTTTA
Found at i:94708 original size:219 final size:218
Alignment explanation
Indices: 94291--94853 Score: 857
Period size: 219 Copynumber: 2.6 Consensus size: 218
94281 TGGCATTTCT
* * * *
94291 TTTTGAAGTCCACAACTCTGTGGCATCCTTTTTAAGTCCACAATTCTGTGGCACCCTTTTAAATC
1 TTTT-AAGTCCACAACTCTGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
* *
94356 CACAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACTCTTTTAAAGTCCACAACTCC
64 CACAACTCCGT-GCGCTCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCC
*
94421 GTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTCAAAGTCCACAACTCCGTGGCACTCTT
128 GTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTCAAAGTCCACAACTCCGTGGCACCCTT
94486 TTAAAGTCCACAACTCCGTGGCA-CCC
193 TT-AAGTCCACAACTCCGTGGCATCCC
*
94512 TTTTAAGTCCACAACTCTGTGGCA-CCTTTCAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 TTTTAAGTCCACAACTCTGTGGCACCCTTT-TAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
94576 ACAACTCCGTAGCGCTCTTTTAAAGTCCACAACTCCGTGGCACCCTCTTT-AAGTCCACAACTCC
65 ACAACTCCGT-GCGCTCTTTTAAAGTCCACAACTCCGTGGCACCCT-TTTAAAGTCCACAACTCC
* **
94640 GTGGCACTCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTT
128 GTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTCAAAGTCCACAACTCCGTGGCACCCTT
94705 TTAAGTCCACAACTCCGTGGCATCCC
193 TTAAGTCCACAACTCCGTGGCATCCC
* *
94731 TTTTAAGACCACAACTCTGTGGCACCCTTTTAAGTCCGCAACTCCGTGGCACCCTTTTAAGTCCA
1 TTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCA
* * *
94796 CAACTTCGTG-GCATCCTTTTAAA-TCCACAACTCCGTGGCACCCATTTCAAAGCCCACA
66 CAACTCCGTGCGC-T-CTTTTAAAGTCCACAACTCCGTGGCACCC-TTTTAAAGTCCACA
94854 CAAGTCAGTG
Statistics
Matches: 316, Mismatches: 18, Indels: 18
0.90 0.05 0.05
Matches are distributed among these distances:
217 2 0.01
218 48 0.15
219 234 0.74
220 28 0.09
221 4 0.01
ACGTcount: A:0.24, C:0.34, G:0.14, T:0.27
Consensus pattern (218 bp):
TTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCA
CAACTCCGTGCGCTCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTG
GCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTCAAAGTCCACAACTCCGTGGCACCCTTTTA
AGTCCACAACTCCGTGGCATCCC
Found at i:94876 original size:32 final size:32
Alignment explanation
Indices: 94821--95454 Score: 1081
Period size: 32 Copynumber: 19.8 Consensus size: 32
94811 CTTTTAAATC
* *
94821 CACAACTCCGTGGC-ACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
94852 CACAAGTCAGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
94884 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
94916 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
94948 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
94980 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
95012 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
95044 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
95076 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
95108 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
95140 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
95172 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
95204 CACAAGTCGGTGGAAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
95236 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
95268 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
95300 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
95332 CACAAGTCGGTGGCAATCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
95364 CACAAGTCGGCGGCAACCCATTTCAAAACCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
95396 CACAAGTCGGTGGCAACCCATTTAAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
** * *
95428 TGCAAGTCAGTGGCAACCCTTTTCAAA
1 CACAAGTCGGTGGCAACCCATTTCAAA
95455 TCACCATTTT
Statistics
Matches: 579, Mismatches: 23, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
31 12 0.02
32 567 0.98
ACGTcount: A:0.32, C:0.35, G:0.18, T:0.15
Consensus pattern (32 bp):
CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
Found at i:96011 original size:20 final size:20
Alignment explanation
Indices: 95983--96057 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
95973 TCATACCCTG
95983 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
96003 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
96023 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
96043 ATGTATCGATACATT
1 ATGTATCGATACATT
96058 ATGTCTTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:96050 original size:40 final size:39
Alignment explanation
Indices: 95983--96060 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
95973 TCATACCCTG
* *
95983 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
96023 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
96061 TCTTTTTACC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:99880 original size:14 final size:14
Alignment explanation
Indices: 99861--99891 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
99851 TTACCAAAAG
99861 AAAAAGTAAAAGAA
1 AAAAAGTAAAAGAA
*
99875 AAAAAGTAAGAGAA
1 AAAAAGTAAAAGAA
99889 AAA
1 AAA
99892 TGAAAGCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.06
Consensus pattern (14 bp):
AAAAAGTAAAAGAA
Found at i:104501 original size:17 final size:17
Alignment explanation
Indices: 104477--104518 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
104467 TTTAGTTTTG
104477 AAAC-TATTTTAACTTA
1 AAACATATTTTAACTTA
* *
104493 AAACATA-TTTAATTTT
1 AAACATATTTTAACTTA
104509 AAACATATTT
1 AAACATATTT
104519 AATTTTTTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 18 0.82
17 4 0.18
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (17 bp):
AAACATATTTTAACTTA
Found at i:104503 original size:16 final size:16
Alignment explanation
Indices: 104484--104520 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
104474 TTGAAACTAT
104484 TTTAACTTAAAACATA
1 TTTAACTTAAAACATA
* *
104500 TTTAATTTTAAACATA
1 TTTAACTTAAAACATA
104516 TTTAA
1 TTTAA
104521 TTTTTTCATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (16 bp):
TTTAACTTAAAACATA
Found at i:104525 original size:17 final size:16
Alignment explanation
Indices: 104493--104524 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
104483 TTTTAACTTA
104493 AAACATATTTAATTTT
1 AAACATATTTAATTTT
104509 AAACATATTTAATTTT
1 AAACATATTTAATTTT
104525 TTCATCCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (16 bp):
AAACATATTTAATTTT
Found at i:104574 original size:17 final size:18
Alignment explanation
Indices: 104552--104588 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
104542 TGGTCACTTT
104552 AATG-TTTTTCATCCAAA
1 AATGTTTTTTCATCCAAA
*
104569 AATGTTTTTTCATCTAAA
1 AATGTTTTTTCATCCAAA
104587 AA
1 AA
104589 CGGTAGCCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.38, C:0.14, G:0.05, T:0.43
Consensus pattern (18 bp):
AATGTTTTTTCATCCAAA
Found at i:106884 original size:25 final size:25
Alignment explanation
Indices: 106850--106903 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
106840 TTGGTCTAAT
*
106850 CTTACCTTATTTCACTAACACTTAG
1 CTTACCTTATTTCACAAACACTTAG
106875 CTTACCTTATTTCACAAACACTTAG
1 CTTACCTTATTTCACAAACACTTAG
106900 CTTA
1 CTTA
106904 TAAATAGAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.30, C:0.28, G:0.04, T:0.39
Consensus pattern (25 bp):
CTTACCTTATTTCACAAACACTTAG
Found at i:111941 original size:89 final size:88
Alignment explanation
Indices: 111790--111956 Score: 210
Period size: 89 Copynumber: 1.9 Consensus size: 88
111780 TTTTTAATAT
* * * * *
111790 TTAAAAAGTGTGATTAGTATATTCCTCCATGTAGGGATAAGCATAATTAAGGTTAACTAAAAAAA
1 TTAAAAAGTGTGACTAGTATATTCCTCCATGTAGGGACAAGCACAATTAAGATTAAC-CAAAAAA
111855 ACTAAACAAAACTGTTTATAGTAC
65 ACTAAACAAAACTGTTTATAGTAC
* * * *
111879 TTAAAAAGTGTGGCTAGTGTATTCCTCTATGTAAGGG-CAAGCACAATTATGATTAACCAAAAAA
1 TTAAAAAGTGTGACTAGTATATTCCTCCATGT-AGGGACAAGCACAATTAAGATTAACCAAAAAA
* *
111943 ACTTATCAAAACTG
65 ACTAAACAAAACTG
111957 ACCTGATTCG
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
88 18 0.27
89 44 0.67
90 4 0.06
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (88 bp):
TTAAAAAGTGTGACTAGTATATTCCTCCATGTAGGGACAAGCACAATTAAGATTAACCAAAAAAA
CTAAACAAAACTGTTTATAGTAC
Found at i:117399 original size:17 final size:17
Alignment explanation
Indices: 117377--117421 Score: 65
Period size: 16 Copynumber: 2.7 Consensus size: 17
117367 AATTATAATT
117377 TTTAAATATATTAAAAA
1 TTTAAATATATTAAAAA
*
117394 TTTAAAAAT-TTAAAAA
1 TTTAAATATATTAAAAA
*
117410 TTTTAATATATT
1 TTTAAATATATT
117422 TATGACCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 14 0.58
17 10 0.42
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TTTAAATATATTAAAAA
Found at i:117408 original size:7 final size:8
Alignment explanation
Indices: 117377--117412 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
117367 AATTATAATT
*
117377 TTTAAATA
1 TTTAAAAA
117385 TATTAAAAA
1 T-TTAAAAA
117394 TTTAAAAA
1 TTTAAAAA
117402 TTTAAAAA
1 TTTAAAAA
117410 TTT
1 TTT
117413 TAATATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
8 19 0.73
9 7 0.27
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (8 bp):
TTTAAAAA
Found at i:117418 original size:33 final size:35
Alignment explanation
Indices: 117349--117421 Score: 89
Period size: 33 Copynumber: 2.1 Consensus size: 35
117339 CGTTCAATAG
* *
117349 ATATTAAAAATAATATAAAATTATAATTTTTAAAT
1 ATATTAAAAATAATATAAAATTAAAAATTTTAAAT
*
117384 ATATTAAAAAT-TTA-AAAATTTAAAAATTTT-AAT
1 ATATTAAAAATAATATAAAA-TTAAAAATTTTAAAT
117417 ATATT
1 ATATT
117422 TATGACCAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
33 12 0.35
34 11 0.32
35 11 0.32
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (35 bp):
ATATTAAAAATAATATAAAATTAAAAATTTTAAAT
Found at i:118041 original size:5 final size:5
Alignment explanation
Indices: 118031--118068 Score: 58
Period size: 5 Copynumber: 7.2 Consensus size: 5
118021 TTATTTATAA
118031 TTAAT TTAAT TTAAT TTAAT TTAAT TTATTAT TTAAT T
1 TTAAT TTAAT TTAAT TTAAT TTAAT TTA--AT TTAAT T
118069 AATAAAATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 26 0.84
7 5 0.16
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (5 bp):
TTAAT
Found at i:118051 original size:15 final size:16
Alignment explanation
Indices: 118023--118068 Score: 67
Period size: 15 Copynumber: 2.9 Consensus size: 16
118013 AGATAAAATT
*
118023 ATTTATAATTAATTTA
1 ATTTATATTTAATTTA
118039 ATTTA-ATTTAATTTA
1 ATTTATATTTAATTTA
118054 ATTTATTATTTAATT
1 ATTTA-TATTTAATT
118069 AATAAAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 14 0.52
16 5 0.19
17 8 0.30
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTTATATTTAATTTA
Found at i:118347 original size:18 final size:17
Alignment explanation
Indices: 118318--118365 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
118308 ATGAATAAAA
* *
118318 TTTAAAACATTATCTTAT
1 TTTAAAATATTAT-TAAT
*
118336 TTTATAATATTAATTAAT
1 TTTAAAATATT-ATTAAT
118354 TTTAAAATATTA
1 TTTAAAATATTA
118366 CATATGATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 1 0.04
18 22 0.88
19 2 0.08
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTAAAATATTATTAAT
Found at i:118995 original size:2 final size:2
Alignment explanation
Indices: 118988--119031 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
118978 TGCCATAATT
118988 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
119030 TA
1 TA
119032 GAAGAAAAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:119527 original size:34 final size:34
Alignment explanation
Indices: 119481--119698 Score: 282
Period size: 34 Copynumber: 6.5 Consensus size: 34
119471 GTAAAAACCA
*
119481 CCATTTAATCAACAATGGCAACCTACCAAATCTC
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
* *
119515 CCATTTAGTCAACAATGGTAAGCC-ACCAAATCAC
1 CCATTTAATCAACAATGGTAA-CCTACCAAATCTC
* *
119549 CCATTTAATCAACAATGGTAAGCTACCAAATTTC
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
*
119583 CCATTTAATCAACAATGGTAAGCTACCAAATCT-
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
* * *
119616 CCATTTAGTCAACAATGGCAAACC-ACCAAATCAC
1 CCATTTAATCAACAATGG-TAACCTACCAAATCTC
* * *
119650 CCATTTAATCAACAATGGTAAACTACTAAATC-A
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
119683 CCATTTAATCAACAAT
1 CCATTTAATCAACAAT
119699 TCTCCCACTT
Statistics
Matches: 162, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
33 45 0.28
34 115 0.71
35 2 0.01
ACGTcount: A:0.40, C:0.27, G:0.08, T:0.25
Consensus pattern (34 bp):
CCATTTAATCAACAATGGTAACCTACCAAATCTC
Found at i:119595 original size:68 final size:67
Alignment explanation
Indices: 119479--119698 Score: 323
Period size: 67 Copynumber: 3.3 Consensus size: 67
119469 TGGTAAAAAC
* * *
119479 CACCATTTAATCAACAATGGCAACCTACCAAATCTCCCATTTAGTCAACAATGGTAAGCCACCAA
1 CACCATTTAATCAACAATGGCAAACTACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCAA
119544 AT
66 AT
* * *
119546 CACCCATTTAATCAACAATGGTAAGCTACCAAATTTCCCATTTAATCAACAATGGTAAGCTACCA
1 CA-CCATTTAATCAACAATGGCAAACTACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCA
119611 AAT
65 AAT
* * * * * *
119614 CTCCATTTAGTCAACAATGGCAAACCACCAAATCACCCATTTAATCAACAATGGTAAACTACTAA
1 CACCATTTAATCAACAATGGCAAACTACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCAA
119679 AT
66 AT
119681 CACCATTTAATCAACAAT
1 CACCATTTAATCAACAAT
119699 TCTCCCACTT
Statistics
Matches: 136, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
67 75 0.55
68 61 0.45
ACGTcount: A:0.40, C:0.27, G:0.08, T:0.25
Consensus pattern (67 bp):
CACCATTTAATCAACAATGGCAAACTACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCAA
AT
Found at i:124158 original size:34 final size:34
Alignment explanation
Indices: 124112--124327 Score: 278
Period size: 34 Copynumber: 6.4 Consensus size: 34
124102 GTAAAAACCA
*
124112 CCATTTAATCAACAATGGCAACCTACCAAATCTC
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
* *
124146 CCATTTAGTCAACAATGGTAAGCC-ACCAAATCAC
1 CCATTTAATCAACAATGGTAA-CCTACCAAATCTC
* *
124180 CCATTTAATCAACAATGGTAAGCTACCAAATTTC
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
*
124214 CCATTTAATCAACAATGGTAAGCTACCAAATCT-
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
* * *
124247 CCATTTAGTCAACAATGGCAAACC-ACCAAATCAC
1 CCATTTAATCAACAATGG-TAACCTACCAAATCTC
* * *
124281 CCATTTAATCAACAATGGTAAACTACTAAATC-A
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
124314 CCATTTAATCAACA
1 CCATTTAATCAACA
124328 TCTCCTTCCA
Statistics
Matches: 160, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
33 43 0.27
34 115 0.72
35 2 0.01
ACGTcount: A:0.40, C:0.27, G:0.08, T:0.25
Consensus pattern (34 bp):
CCATTTAATCAACAATGGTAACCTACCAAATCTC
Found at i:124226 original size:68 final size:67
Alignment explanation
Indices: 124110--124327 Score: 319
Period size: 67 Copynumber: 3.2 Consensus size: 67
124100 TGGTAAAAAC
* * *
124110 CACCATTTAATCAACAATGGCAACCTACCAAATCTCCCATTTAGTCAACAATGGTAAGCCACCAA
1 CACCATTTAATCAACAATGGCAAACTACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCAA
124175 AT
66 AT
* * *
124177 CACCCATTTAATCAACAATGGTAAGCTACCAAATTTCCCATTTAATCAACAATGGTAAGCTACCA
1 CA-CCATTTAATCAACAATGGCAAACTACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCA
124242 AAT
65 AAT
* * * * * *
124245 CTCCATTTAGTCAACAATGGCAAACCACCAAATCACCCATTTAATCAACAATGGTAAACTACTAA
1 CACCATTTAATCAACAATGGCAAACTACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCAA
124310 AT
66 AT
124312 CACCATTTAATCAACA
1 CACCATTTAATCAACA
124328 TCTCCTTCCA
Statistics
Matches: 134, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
67 73 0.54
68 61 0.46
ACGTcount: A:0.40, C:0.28, G:0.08, T:0.24
Consensus pattern (67 bp):
CACCATTTAATCAACAATGGCAAACTACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCAA
AT
Found at i:125817 original size:17 final size:15
Alignment explanation
Indices: 125797--125847 Score: 52
Period size: 14 Copynumber: 3.4 Consensus size: 15
125787 TTAGGTAAAA
125797 AAGAAAGAAAGAAGATG
1 AAGAAAGAAAGAA-A-G
125814 AAG-AAGAAAGAAAG
1 AAGAAAGAAAGAAAG
* *
125828 AA-AAAGAAAAAAAA
1 AAGAAAGAAAGAAAG
125842 AAGAAA
1 AAGAAA
125848 AAAATATGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
14 14 0.47
15 4 0.13
16 9 0.30
17 3 0.10
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (15 bp):
AAGAAAGAAAGAAAG
Found at i:125848 original size:17 final size:17
Alignment explanation
Indices: 125794--125849 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
125784 TGGTTAGGTA
* *
125794 AAAAAGAAAGAAAGAAG
1 AAAAAGAAAAAAAAAAG
** * *
125811 ATGAAGAAGAAAGAAAG
1 AAAAAGAAAAAAAAAAG
125828 AAAAAGAAAAAAAAAAG
1 AAAAAGAAAAAAAAAAG
125845 AAAAA
1 AAAAA
125850 AATATGAAAT
Statistics
Matches: 29, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.02
Consensus pattern (17 bp):
AAAAAGAAAAAAAAAAG
Found at i:127545 original size:580 final size:580
Alignment explanation
Indices: 126445--127598 Score: 2272
Period size: 580 Copynumber: 2.0 Consensus size: 580
126435 AAATAAAAAA
*
126445 TATTTGTTTCTTATTTTGTGTCAAAACCTTGAGTGGTATAATCAACGGGCTGTTTCATCGTCCCA
1 TATTTGTGTCTTATTTTGTGTCAAAACCTTGAGTGGTATAATCAACGGGCTGTTTCATCGTCCCA
*
126510 AACTACTCCGGGATTGTGTAAATGAGTTCGTGATGCTCATACCACTCTTTCCCTTCTGTCACAGA
66 AACTACTCCGGGATTGTGTAAATGACTTCGTGATGCTCATACCACTCTTTCCCTTCTGTCACAGA
126575 CATTCGGATGTCCATGATTCGAGTTTAGACCCGTAAACATTTAGGAAACCGAAACCTTCTCCTGT
131 CATTCGGATGTCCATGATTCGAGTTTAGACCCGTAAACATTTAGGAAACCGAAACCTTCTCCTGT
126640 TTTACTATGTCCTCTACTGGCAGCATCACTGTTGTGTATTGAAAAATCGTTTAAAAATCTAAAAA
196 TTTACTATGTCCTCTACTGGCAGCATCACTGTTGTGTATTGAAAAATCGTTTAAAAATCTAAAAA
126705 TATTTTTTGTGAATTTCATTGTATTTTTCCTTGAAAGCGTGTCGAAATATCTTTCCAACGGTATC
261 TATTTTTTGTGAATTTCATTGTATTTTTCCTTGAAAGCGTGTCGAAATATCTTTCCAACGGTATC
126770 TTGTTTGCTCCCGGATCGTTCTAGATGAGGGAGTTATGATTTTTTCGAACCTAAACTGTCTAGAA
326 TTGTTTGCTCCCGGATCGTTCTAGATGAGGGAGTTATGATTTTTTCGAACCTAAACTGTCTAGAA
126835 CCCATGGAATCAGCGATTTGCATTCTAGTCGGGCCGTTTTGGACCACTAGATGATTTTTCAAAAT
391 CCCATGGAATCAGCGATTTGCATTCTAGTCGGGCCGTTTTGGACCACTAGATGATTTTTCAAAAT
126900 TTTCCAAACATTTTTCCTAAAAACATCATGAAATTATCTTTCCGGAAAGGTATAGTTTATAATTT
456 TTTCCAAACATTTTTCCTAAAAACATCATGAAATTATCTTTCCGGAAAGGTATAGTTTATAATTT
*
126965 TTCAATACCAAATGAATTCGGGATGATTTTTCAAAAATTGTCACACATTTACTTGAGTGG
521 TTCAATACCAAATGAATTCGAGATGATTTTTCAAAAATTGTCACACATTTACTTGAGTGG
127025 TATTTGTGTCTTATTTTGTGTCAAAACCTTGAGTGGTATAATCAACGGGCTGTTTCATCGTCCCA
1 TATTTGTGTCTTATTTTGTGTCAAAACCTTGAGTGGTATAATCAACGGGCTGTTTCATCGTCCCA
*
127090 AACTACTCTGGGATTGTGTAAATGACTTCGTGATGCTCATACCACTCTTTCCCTTCTGTCACAGA
66 AACTACTCCGGGATTGTGTAAATGACTTCGTGATGCTCATACCACTCTTTCCCTTCTGTCACAGA
127155 CATTCGGATGTCCATGATTCGAGTTTAGACCCGTAAACATTTAGGAAACCGAAACCTTCTCCTGT
131 CATTCGGATGTCCATGATTCGAGTTTAGACCCGTAAACATTTAGGAAACCGAAACCTTCTCCTGT
127220 TTTACTATGTCCTCTACTGGCAGCATCACTGTTGTGTATTGAAAAATCGTTTAAAAATCTAAAAA
196 TTTACTATGTCCTCTACTGGCAGCATCACTGTTGTGTATTGAAAAATCGTTTAAAAATCTAAAAA
127285 TATTTTTTGTGAATTTCATTGTATTTTTCCTTGAAAGCGTGTCGAAATATCTTTCCAACGGTATC
261 TATTTTTTGTGAATTTCATTGTATTTTTCCTTGAAAGCGTGTCGAAATATCTTTCCAACGGTATC
127350 TTGTTTGCTCCCGGATCGTTCTAGATGAGGGAGTTATGATTTTTTCGAACCTAAACTGTCTAGAA
326 TTGTTTGCTCCCGGATCGTTCTAGATGAGGGAGTTATGATTTTTTCGAACCTAAACTGTCTAGAA
127415 CCCATGGAATCAGCGATTTGCATTCTAGTCGGGCCGTTTTGGACCACTAGATGATTTTTCAAAAT
391 CCCATGGAATCAGCGATTTGCATTCTAGTCGGGCCGTTTTGGACCACTAGATGATTTTTCAAAAT
127480 TTTCCAAACATTTTTCCTAAAAACATCATGAAATTATCTTTCCGGAAAGGTATAGTTTATAATTT
456 TTTCCAAACATTTTTCCTAAAAACATCATGAAATTATCTTTCCGGAAAGGTATAGTTTATAATTT
127545 TTCAATACCAAATGAATTCGAGATGATTTTTCAAAAATTGTCACACATTTACTT
521 TTCAATACCAAATGAATTCGAGATGATTTTTCAAAAATTGTCACACATTTACTT
127599 CATATGCTCT
Statistics
Matches: 570, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
580 570 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (580 bp):
TATTTGTGTCTTATTTTGTGTCAAAACCTTGAGTGGTATAATCAACGGGCTGTTTCATCGTCCCA
AACTACTCCGGGATTGTGTAAATGACTTCGTGATGCTCATACCACTCTTTCCCTTCTGTCACAGA
CATTCGGATGTCCATGATTCGAGTTTAGACCCGTAAACATTTAGGAAACCGAAACCTTCTCCTGT
TTTACTATGTCCTCTACTGGCAGCATCACTGTTGTGTATTGAAAAATCGTTTAAAAATCTAAAAA
TATTTTTTGTGAATTTCATTGTATTTTTCCTTGAAAGCGTGTCGAAATATCTTTCCAACGGTATC
TTGTTTGCTCCCGGATCGTTCTAGATGAGGGAGTTATGATTTTTTCGAACCTAAACTGTCTAGAA
CCCATGGAATCAGCGATTTGCATTCTAGTCGGGCCGTTTTGGACCACTAGATGATTTTTCAAAAT
TTTCCAAACATTTTTCCTAAAAACATCATGAAATTATCTTTCCGGAAAGGTATAGTTTATAATTT
TTCAATACCAAATGAATTCGAGATGATTTTTCAAAAATTGTCACACATTTACTTGAGTGG
Found at i:134254 original size:30 final size:31
Alignment explanation
Indices: 134214--134489 Score: 110
Period size: 27 Copynumber: 9.9 Consensus size: 31
134204 GTACTGTGAC
*
134214 CTTTTCAAAGTCCACGACT-TAGTGGCATTTT
1 CTTTTCAAAGTCCACAACTCT-GTGGCATTTT
*
134245 CTTTT-AAAGTCCACAACTCTGTGGCA--TC
1 CTTTTCAAAGTCCACAACTCTGTGGCATTTT
**
134273 CTTTT--AAGTCCACAACTCTGTGGCA--CC
1 CTTTTCAAAGTCCACAACTCTGTGGCATTTT
* **
134300 CTTTT-AAAGTCCACAACTCCGTGGCACCTT
1 CTTTTCAAAGTCCACAACTCTGTGGCATTTT
* **
134330 -TTTT---AGTCCACAACTCCGTGGCA--CC
1 CTTTTCAAAGTCCACAACTCTGTGGCATTTT
* *
134355 CTTTT--AAGTCCACAACTCCGTGGCA--CT
1 CTTTTCAAAGTCCACAACTCTGTGGCATTTT
* * * **
134382 CTTTT--AAGTGCACGACTCCGTGGCA--CC
1 CTTTTCAAAGTCCACAACTCTGTGGCATTTT
* * *
134409 CTTTT--AAGTCCATAACTCTATGGCA-TCT
1 CTTTTCAAAGTCCACAACTCTGTGGCATTTT
* *
134437 CTTTT--AAGTCCACAACTCTCTGGCA---C
1 CTTTTCAAAGTCCACAACTCTGTGGCATTTT
* *
134463 CTTTTTAAAGTCCACAACTCCGTGGCA
1 CTTTTCAAAGTCCACAACTCTGTGGCA
134490 CCCTTTTTAG
Statistics
Matches: 213, Mismatches: 23, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
26 9 0.04
27 109 0.51
28 67 0.31
29 4 0.02
30 18 0.08
31 6 0.03
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.32
Consensus pattern (31 bp):
CTTTTCAAAGTCCACAACTCTGTGGCATTTT
Found at i:134345 original size:82 final size:81
Alignment explanation
Indices: 134245--135187 Score: 1368
Period size: 82 Copynumber: 11.5 Consensus size: 81
134235 GTGGCATTTT
* * *
134245 CTTTTAAAGTCCACAACTCTGTGGCATCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAAGT
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGT
134310 CCACAACTCCGTGGCACC
64 CCACAACTCCGTGGCACC
* * * *
134328 TTTTTTAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTAAGTGC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
*
134393 ACGACTCCGTGGCACC
66 ACAACTCCGTGGCACC
* ** * *
134409 CTTTTAAGTCCATAACTCTATGGCATCTCTTTTAAGTCCACAACTCTC-TGGCACCTTTTTAAAG
1 CTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTC-CGTGGCACCCTTTT-AAG
134473 TCCACAACTCCGTGGCACC
63 TCCACAACTCCGTGGCACC
* * *
134492 CTTTTTAGTCCACAATTCCGTGGCACCCTTTTAAGTCCACAACGCCGTGGCACCCATTTT-AGTC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCC-TTTTAAGTC
* *
134556 CACAATTTCGTGGCACC
65 CACAACTCCGTGGCACC
*
134573 CTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
134638 ACAACTCCGTGGCATCC
66 ACAACTCCGTGGCA-CC
* * * *
134655 CTTTTAAAGTCCACAATTCCGTGACACCCTTTTTAGTCCACAATTCCGTGGCACCCTTTTAAGTC
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
*
134720 CACAACTCTGTGGCACC
65 CACAACTCCGTGGCACC
* * *
134737 TTTTTAAGTCCACAACTCCATGGCATCCCTTTTAAGTCCACAACTCCGTGGCATCTCTTTTAAGT
1 CTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGT
*
134802 CCACAACTCTGTGGCACC
64 CCACAACTCCGTGGCACC
* *
134820 CTTTTAAGTCTACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCCTTTTAAGAC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTC
134885 CACAACTCCGTGGCACC
65 CACAACTCCGTGGCACC
* **
134902 CTTTTACGTCCACAACTCCGTGGCATTCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
*
134967 ACAACTCTGTGGCACC
66 ACAACTCCGTGGCACC
* * * *
134983 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCTCAACTCTGTGGCATCCCTTTTATGGC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTC
135048 CACAACTCCGTGGCACC
65 CACAACTCCGTGGCACC
* *
135065 CTTTTTAGTCCACAACTCCGTGGCACCCTTTCAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
*
135130 ACAACTCTGTGGCACC
66 ACAACTCCGTGGCACC
* * *
135146 CTTTTAAGTCCACAACTCAGTGGCATCCTTGTAAGTCCACAA
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAA
135188 ATCTGTGGTA
Statistics
Matches: 770, Mismatches: 79, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
80 4 0.01
81 282 0.37
82 317 0.41
83 167 0.22
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (81 bp):
CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
ACAACTCCGTGGCACC
Found at i:135195 original size:27 final size:27
Alignment explanation
Indices: 134245--135187 Score: 1368
Period size: 27 Copynumber: 34.6 Consensus size: 27
134235 GTGGCATTTT
* *
134245 CTTTTAAAGTCCACAACTCTGTGGCATC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
134273 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
134300 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
* *
134328 TTTTTTAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
134355 CTTTTAAGTCCACAACTCCGTGGCACT
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
134382 CTTTTAAGTGCACGACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* ** *
134409 CTTTTAAGTCCATAACTCTATGGCATCT
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
134437 CTTTTAAGTCCACAACTCTC-TGGCACC
1 CTTTTAAGTCCACAACTC-CGTGGCACC
*
134464 TTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
* *
134492 CTTTTTAGTCCACAATTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
134519 CTTTTAAGTCCACAACGCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
134546 CATTTT-AGTCCACAATTTCGTGGCACC
1 C-TTTTAAGTCCACAACTCCGTGGCACC
*
134573 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
134600 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
134627 CTTTTAAGTCCACAACTCCGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
* *
134655 CTTTTAAAGTCCACAATTCCGTGACACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
* *
134683 CTTTTTAGTCCACAATTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
134710 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
134737 TTTTTAAGTCCACAACTCCATGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
*
134765 CTTTTAAGTCCACAACTCCGTGGCATCT
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
*
134793 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
134820 CTTTTAAGTCTACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
134847 CTTTTAAGTCCACAACTCCGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
*
134875 CTTTTAAGACCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* **
134902 CTTTTACGTCCACAACTCCGTGGCATT
1 CTTTTAAGTCCACAACTCCGTGGCACC
134929 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
134956 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
134983 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
135010 CTTTTAAGTCCTCAACTCTGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
* *
135038 CTTTTATGGCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
135065 CTTTTTAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
135092 CTTTCAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
135119 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
135146 CTTTTAAGTCCACAACTCAGTGGCATC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
135173 CTTGTAAGTCCACAA
1 CTTTTAAGTCCACAA
135188 ATCTGTGGTA
Statistics
Matches: 826, Mismatches: 77, Indels: 25
0.89 0.08 0.03
Matches are distributed among these distances:
26 4 0.00
27 609 0.74
28 195 0.24
29 18 0.02
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (27 bp):
CTTTTAAGTCCACAACTCCGTGGCACC
Found at i:135229 original size:55 final size:55
Alignment explanation
Indices: 134215--135271 Score: 434
Period size: 54 Copynumber: 19.3 Consensus size: 55
134205 TACTGTGACC
* * * * *
134215 TTTTCAAAGTCCACGACTTAGTGGCATTTTCTTTTAAAGTCCACAACTCTGTGGCATCC-
1 TTTTCAAAGCCCACAACTCAGTGGCA---TCCTTT-AAGTCCACAAATCTGTGGCA-CCA
* * * * *
134274 TTTT--AAGTCCACAACTCTGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACC-
1 TTTTCAAAGCCCACAACTCAGTGGCATCC-TTT-AAGTCCACAAATCTGTGGCACCA
** * * * * *
134328 TTTT-TTAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACTC-
1 TTTTCAAAGCCCACAACTCAGTGGCATCC-TTTAAGTCCACAAATCTGTGGCAC-CA
** * * * * * *
134383 TTTT--AAGTGCACGACTCCGTGGCACCCTTTTAAGTCCATAACTCTATGGCATCTC-
1 TTTTCAAAGCCCACAACTCAGTGGCATCC-TTTAAGTCCACAAATCTGTGGCA-C-CA
* ** * * *
134438 TTTT--AAGTCCACAACTCTCTGGCA-CCTTTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTTCAAAGCCCACAACTCAGTGGCATCC--TTT-AAGTCCACAAATCTGTGGCACCA
* * * * * ** *
134493 TTTT--TAGTCCACAATTCCGTGGCACCCTTTTAAGTCCACAACGCCGTGGCACCCA
1 TTTTCAAAGCCCACAACTCAGTGGCATCC-TTTAAGTCCACAAATCTGTGGCA-CCA
* * * * *
134548 TTTT---AGTCCACAATTTC-GTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCC
1 TTTTCAAAGCCCACAA-CTCAGTGGCATCC-TTTAAGTCCACAAATCTGTGGCACCA
* * * * * *
134601 TTTT--AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCC
1 TTTTCAAAGCCCACAACTCAGTGGCATCC-TTTAAGTCCACAAATCTGTGGCA-CCA
* * * * * * * * *
134656 TTTT-AAAGTCCACAATTCCGTGACACCCTTTTTAGTCCACAATTCCGTGGCACCC
1 TTTTCAAAGCCCACAACTCAGTGGCATCC-TTTAAGTCCACAAATCTGTGGCACCA
* * * ** *
134711 TTTT--AAGTCCACAACTCTGTGGCA-CCTTTTTAAGTCCACAACTCCATGGCATCCC
1 TTTTCAAAGCCCACAACTCAGTGGCATCC--TTTAAGTCCACAAATCTGTGGCA-CCA
* * * *
134766 TTTT--AAGTCCACAACTCCGTGGCATCTCTTTTAAGTCCACAACTCTGTGGCACCC
1 TTTTCAAAGCCCACAACTCAGTGGCATC-C-TTTAAGTCCACAAATCTGTGGCACCA
* * * * * * *
134821 TTTT--AAGTCTACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCC
1 TTTTCAAAGCCCACAACTCAGTGGCATCC-TTTAAGTCCACAAATCTGTGGCA-CCA
* * * * * * *
134876 TTTT--AAGACCACAACTCCGTGGCACCCTTTTACGTCCACAACTCCGTGGCATTC-
1 TTTTCAAAGCCCACAACTCAGTGGCATCC-TTTAAGTCCACAAATCTGTGGCA-CCA
* * * * *
134930 TTTT--AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCC
1 TTTTCAAAGCCCACAACTCAGTGGCATCC-TTTAAGTCCACAAATCTGTGGCACCA
* * * * * *
134984 TTTT--AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCTCAACTCTGTGGCATCCC
1 TTTTCAAAGCCCACAACTCAGTGGCATCC-TTTAAGTCCACAAATCTGTGGCA-CCA
* * * * * * *
135039 TTTT--ATGGCCACAACTCCGTGGCACCCTTTTTAGTCCACAACTCCGTGGCACC-
1 TTTTCAAAGCCCACAACTCAGTGGCATCC-TTTAAGTCCACAAATCTGTGGCACCA
* * * * * *
135092 CTTTC-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCC
1 TTTTCAAAGCCCACAACTCAGTGGCATCC-TTTAAGTCCACAAATCTGTGGCACCA
* * *
135147 TTTT--AAGTCCACAACTCAGTGGCATCCTTGTAAGTCCACAAATCTGTGGTA-CT
1 TTTTCAAAGCCCACAACTCAGTGGCATCCTT-TAAGTCCACAAATCTGTGGCACCA
* * * * *
135200 TTTTCAAAGCCCACAAGTCAGTGGTATCCTTTCAAAGCCCACAAGTCAGTGGCACCA
1 TTTTCAAAGCCCACAACTCAGTGGCATCCTTT--AAGTCCACAAATCTGTGGCACCA
135257 TTTTCAAAGCCCACA
1 TTTTCAAAGCCCACA
135272 CAAGTTGGTG
Statistics
Matches: 888, Mismatches: 81, Indels: 60
0.86 0.08 0.06
Matches are distributed among these distances:
53 21 0.02
54 420 0.47
55 308 0.35
56 101 0.11
57 34 0.04
59 4 0.00
ACGTcount: A:0.23, C:0.33, G:0.15, T:0.29
Consensus pattern (55 bp):
TTTTCAAAGCCCACAACTCAGTGGCATCCTTTAAGTCCACAAATCTGTGGCACCA
Found at i:135234 original size:136 final size:134
Alignment explanation
Indices: 134245--135203 Score: 1328
Period size: 136 Copynumber: 7.0 Consensus size: 134
134235 GTGGCATTTT
* * * *
134245 CTTTTAAAGTCCACAACTCTGTGGCATCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAAGT
1 CTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGT
* * *
134310 CCACAACTCCGTGGCACCTTTTTTAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCG
65 CCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCG
134375 TGGCA
130 TGGCA
* * * ** *
134380 CTCTTTTAAGTGCACGACTCCGTGGCACCCTTTTAAGTCCATAACTCTATGGCATCTCTTTTAAG
1 CT-TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAG
* * * *
134445 TCCACAACTCTCTGGCACCTTTTTAAAGTCCACAACTCCGTGGCACCCTTTTTAGTCCACAATTC
64 TCCACAACTCTGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTC
134510 CGTGGCA
128 CGTGGCA
* * * *
134517 CCCTTTTAAGTCCACAACGCCGTGGCACCCATTTT-AGTCCACAATTTCGTGGCACCCTTTTAAG
1 -CTTTTTAAGTCCACAACTCCGTGGCACCC-TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAG
134581 TCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCC
64 TCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCC
134646 GTGGCA
129 GTGGCA
* * * * *
134652 TCCCTTTTAAAGTCCACAATTCCGTGACACCCTTTTTAGTCCACAATTCCGTGGCACCCTTTTAA
1 ---CTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAA
* *
134717 GTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCCATGGCATCCCTTTTAAGTCCACAACT
63 GTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACT
134782 CCGTGGCA
127 CCGTGGCA
* *
134790 TCTCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCTACAACTCCGTGGCACCCTTTTAAG
1 -CT-TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAG
* * *
134855 TCCACAACTCCGTGGCATCCCTTTTAAGACCACAACTCCGTGGCACCCTTTTACGTCCACAACTC
64 TCCACAACTCTGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTC
134920 CGTGGCA
128 CGTGGCA
* *
134927 TTCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGT
1 CT-TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGT
* * * * *
134992 CCACAACTCCGTGGCACCCTTTTAAGTCCTCAACTCTGTGGCATCCCTTTTATGGCCACAACTCC
65 CCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCC
135057 GTGGCA
129 GTGGCA
*
135063 CCCTTTTT-AGTCCACAACTCCGTGGCACCCTTTCAAGTCCACAACTCCGTGGCACCCTTTTAAG
1 --CTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAG
* * * * *
135127 TCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCAGTGGCATCCTTGTAAGTCCACAAATCT
64 TCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCC
*
135192 GTGGTA
129 GTGGCA
135198 CTTTTT
1 CTTTTT
135204 CAAAGCCCAC
Statistics
Matches: 740, Mismatches: 70, Indels: 30
0.88 0.08 0.04
Matches are distributed among these distances:
133 6 0.01
135 91 0.12
136 303 0.41
137 283 0.38
138 57 0.08
ACGTcount: A:0.22, C:0.33, G:0.15, T:0.30
Consensus pattern (134 bp):
CTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
CACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGT
GGCA
Found at i:135294 original size:32 final size:32
Alignment explanation
Indices: 135200--135712 Score: 685
Period size: 32 Copynumber: 16.2 Consensus size: 32
135190 CTGTGGTACT
* * *
135200 TTTTCAAAG-CC-CACAAGTCAGTGGTATCC-
1 TTTTCAAAGCCCACACAAGTCGGTGGCAACCA
*
135229 -TTTCAAAG-CC-CACAAGTCAGTGGC-ACCA
1 TTTTCAAAGCCCACACAAGTCGGTGGCAACCA
*
135257 TTTTCAAAGCCCACACAAGTTGGTGGCAACCA
1 TTTTCAAAGCCCACACAAGTCGGTGGCAACCA
*
135289 TTTTCAAAGCCCACACAAGTCGATGGCAACCCA
1 TTTTCAAAGCCCACACAAGTCGGTGGCAA-CCA
* *
135322 -TTTCAAAGCCCACACAAGTCGATGACAACCCA
1 TTTTCAAAGCCCACACAAGTCGGTGGCAA-CCA
135354 -TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTTCAAAGCCCACACAAGTCGGTGGCAA-CCA
*
135386 -TTTCAAAGCCCTCACAAGTCGGTGGCAACCA
1 TTTTCAAAGCCCACACAAGTCGGTGGCAACCA
*
135417 TTTTCAAAGCCCACACAAGTCGGTGGCAACCC
1 TTTTCAAAGCCCACACAAGTCGGTGGCAACCA
*
135449 TTTTCAAAGCCCACACAAGTCGGTGGCAACCC
1 TTTTCAAAGCCCACACAAGTCGGTGGCAACCA
*
135481 TTTCCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTTCAAAGCCCACACAAGTCGGTGGCAA-CCA
*
135514 -TTTCAAAGCCCACACAAGTCGGTGGCAACCC
1 TTTTCAAAGCCCACACAAGTCGGTGGCAACCA
135545 TTTTCAAAGCCCACACAAGTCGGTGGCAAACCA
1 TTTTCAAAGCCCACACAAGTCGGTGGC-AACCA
135578 -TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTTCAAAGCCCACACAAGTCGGTGGCAA-CCA
* * *
135610 -TTCCAAAGCCCACATAAGTCGGTGGCAACCC
1 TTTTCAAAGCCCACACAAGTCGGTGGCAACCA
135641 TTTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTTCAAAGCCCACACAAGTCGGTGGCAA-CCA
* * * *
135674 -TTTAAAAGCCCACGCAAGTCAGTGGCAACCC
1 TTTTCAAAGCCCACACAAGTCGGTGGCAACCA
135705 TTTTCAAA
1 TTTTCAAA
135713 TCACCATTTT
Statistics
Matches: 442, Mismatches: 28, Indels: 25
0.89 0.06 0.05
Matches are distributed among these distances:
27 2 0.00
28 23 0.05
29 8 0.02
30 2 0.00
31 23 0.05
32 373 0.84
33 11 0.02
ACGTcount: A:0.31, C:0.33, G:0.18, T:0.19
Consensus pattern (32 bp):
TTTTCAAAGCCCACACAAGTCGGTGGCAACCA
Found at i:135848 original size:49 final size:45
Alignment explanation
Indices: 135733--135865 Score: 124
Period size: 45 Copynumber: 2.9 Consensus size: 45
135723 TGTCATCTTA
* *
135733 TAGTCCGATATCGTTGGCCTTGAATCAGCATATTGGCACCTTTCT
1 TAGTCCGATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTTCT
* * * * * *
135778 AAGCCCAATGTCGCTGGCCTTGAGTCAGCACATTGGTCCACTTTTCCCT
1 TAGTCCGATGTCGTTGGCCTTGAATCAGCACATTGG--CACCTTT--CT
* *
135827 TAGTCCGATGTCGTTGACCTTGAAAT-GGCACATTGGCAC
1 TAGTCCGATGTCGTTGGCCTTG-AATCAGCACATTGGCAC
135866 TCCTGTCATC
Statistics
Matches: 68, Mismatches: 15, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
45 29 0.43
47 9 0.13
49 28 0.41
50 2 0.03
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (45 bp):
TAGTCCGATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTTCT
Found at i:136973 original size:17 final size:15
Alignment explanation
Indices: 136953--137002 Score: 52
Period size: 14 Copynumber: 3.4 Consensus size: 15
136943 TTAGGTAAAA
136953 AAGAAAGAAAGAAGATG
1 AAGAAAGAAAGAA-A-G
136970 AAG-AAGAAAGAAAG
1 AAGAAAGAAAGAAAG
*
136984 AA-AAAGAAA-AAAA
1 AAGAAAGAAAGAAAG
136997 AAGAAA
1 AAGAAA
137003 AAAATATGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
13 5 0.17
14 12 0.40
15 1 0.03
16 9 0.30
17 3 0.10
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (15 bp):
AAGAAAGAAAGAAAG
Found at i:136991 original size:10 final size:10
Alignment explanation
Indices: 136950--137006 Score: 62
Period size: 10 Copynumber: 5.4 Consensus size: 10
136940 GGGTTAGGTA
136950 AAAAAGAAAG
1 AAAAAGAAAG
136960 AAAGAAGATGAAG
1 AAA-AAGA--AAG
136973 AAGAAAGAAAG
1 AA-AAAGAAAG
*
136984 AAAAAGAAAA
1 AAAAAGAAAG
136994 AAAAAGAAA-
1 AAAAAGAAAG
137003 AAAA
1 AAAA
137007 TATGAAATGG
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
9 4 0.10
10 19 0.45
11 9 0.21
13 9 0.21
14 1 0.02
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (10 bp):
AAAAAGAAAG
Found at i:139585 original size:70 final size:70
Alignment explanation
Indices: 139472--139612 Score: 282
Period size: 70 Copynumber: 2.0 Consensus size: 70
139462 TGATTCATCT
139472 ATCGATCTTCCCCCTTTAATCAACATATTTCTCATCATGCCATGGAAATCCCCAATCGCGAGGGA
1 ATCGATCTTCCCCCTTTAATCAACATATTTCTCATCATGCCATGGAAATCCCCAATCGCGAGGGA
139537 TATTA
66 TATTA
139542 ATCGATCTTCCCCCTTTAATCAACATATTTCTCATCATGCCATGGAAATCCCCAATCGCGAGGGA
1 ATCGATCTTCCCCCTTTAATCAACATATTTCTCATCATGCCATGGAAATCCCCAATCGCGAGGGA
139607 TATTA
66 TATTA
139612 A
1 A
139613 GTCGGGCATG
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.30
Consensus pattern (70 bp):
ATCGATCTTCCCCCTTTAATCAACATATTTCTCATCATGCCATGGAAATCCCCAATCGCGAGGGA
TATTA
Found at i:139816 original size:32 final size:32
Alignment explanation
Indices: 139777--139859 Score: 89
Period size: 32 Copynumber: 2.6 Consensus size: 32
139767 ATTCGAACTA
139777 ATCCGAACCCGAAATGATCCGA-ATTCAAAATG
1 ATCCGAACCCGAAATGA-CCGAGATTCAAAATG
** * *
139809 A-CACGAACCTAAAATGACCTAGATTCGAAATG
1 ATC-CGAACCCGAAATGACCGAGATTCAAAATG
*
139841 ATCCGAACTCGAAATGACC
1 ATCCGAACCCGAAATGACC
139860 CAAACTTAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
31 4 0.10
32 36 0.88
33 1 0.02
ACGTcount: A:0.41, C:0.25, G:0.16, T:0.18
Consensus pattern (32 bp):
ATCCGAACCCGAAATGACCGAGATTCAAAATG
Found at i:140932 original size:16 final size:16
Alignment explanation
Indices: 140913--140990 Score: 86
Period size: 16 Copynumber: 4.9 Consensus size: 16
140903 CAAAGCAACT
140913 CGAACTCGAAATGACC
1 CGAACTCGAAATGACC
* *
140929 CGAACTTGAAATGATC
1 CGAACTCGAAATGACC
*
140945 CGAA-TCCAAAGTGACC
1 CGAACTCGAAA-TGACC
* *
140961 TGAACTCGAAATGACT
1 CGAACTCGAAATGACC
*
140977 CAAACTCGAAATGA
1 CGAACTCGAAATGA
140991 TCTAAACTCA
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
15 4 0.08
16 41 0.82
17 5 0.10
ACGTcount: A:0.40, C:0.24, G:0.18, T:0.18
Consensus pattern (16 bp):
CGAACTCGAAATGACC
Found at i:140941 original size:48 final size:48
Alignment explanation
Indices: 140876--140992 Score: 130
Period size: 48 Copynumber: 2.4 Consensus size: 48
140866 TAAATTCGAT
* *
140876 TGACCCGAACCTAAAATGA-CTCGAACCCAAAGCAA-CTCGAACTCGAAA
1 TGACCCGAACTTGAAATGATC-CGAACCCAAAGCAACCT-GAACTCGAAA
* **
140924 TGACCCGAACTTGAAATGATCCGAATCCAAAGTGACCTGAACTCGAAA
1 TGACCCGAACTTGAAATGATCCGAACCCAAAGCAACCTGAACTCGAAA
* * *
140972 TGACTCAAACTCGAAATGATC
1 TGACCCGAACTTGAAATGATC
140993 TAAACTCAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
48 56 0.95
49 3 0.05
ACGTcount: A:0.39, C:0.27, G:0.16, T:0.17
Consensus pattern (48 bp):
TGACCCGAACTTGAAATGATCCGAACCCAAAGCAACCTGAACTCGAAA
Found at i:140997 original size:16 final size:16
Alignment explanation
Indices: 140963--140999 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
140953 AAGTGACCTG
140963 AACTCGAAATGACTCA
1 AACTCGAAATGACTCA
140979 AACTCGAAATGA-TCTA
1 AACTCGAAATGACTC-A
140995 AACTC
1 AACTC
141000 AAAAATAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.43, C:0.24, G:0.11, T:0.22
Consensus pattern (16 bp):
AACTCGAAATGACTCA
Found at i:141024 original size:15 final size:15
Alignment explanation
Indices: 141004--141064 Score: 68
Period size: 15 Copynumber: 4.0 Consensus size: 15
140994 AAACTCAAAA
**
141004 ATAATTTAAAATTTT
1 ATAATTTAAAATAAT
141019 ATAATTTAAAATAAT
1 ATAATTTAAAATAAT
*
141034 CTAATTTAAAATAAT
1 ATAATTTAAAATAAT
* *
141049 CTAATCTAAAACTAAT
1 ATAATTTAAAA-TAAT
141065 TCGATTCACC
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
15 37 0.90
16 4 0.10
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (15 bp):
ATAATTTAAAATAAT
Found at i:141059 original size:30 final size:31
Alignment explanation
Indices: 141005--141064 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
140995 AACTCAAAAA
** *
141005 TAATTTAAAATTTTATAATTTAAAA-TAATC
1 TAATTTAAAATAATATAATCTAAAACTAATC
*
141035 TAATTTAAAATAATCTAATCTAAAACTAAT
1 TAATTTAAAATAATATAATCTAAAACTAAT
141065 TCGATTCACC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.42
Consensus pattern (31 bp):
TAATTTAAAATAATATAATCTAAAACTAATC
Found at i:141645 original size:27 final size:27
Alignment explanation
Indices: 141614--141686 Score: 64
Period size: 26 Copynumber: 2.7 Consensus size: 27
141604 AAATTTATAA
141614 AAATATATAATATTTTAAATATC-AT-T
1 AAATATATAATATTTTAAATA-CGATAT
* * *
141640 ATAATAAAAAATA-TATAAATACGATAT
1 A-AATATATAATATTTTAAATACGATAT
141667 AAATATATAA-ATTATTAAAT
1 AAATATATAATATT-TTAAAT
141687 TTTTTCATAT
Statistics
Matches: 36, Mismatches: 6, Indels: 9
0.71 0.12 0.18
Matches are distributed among these distances:
25 2 0.06
26 18 0.50
27 16 0.44
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (27 bp):
AAATATATAATATTTTAAATACGATAT
Found at i:142473 original size:17 final size:16
Alignment explanation
Indices: 142431--142474 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
142421 AATCATTTTT
142431 ATATAATATGAAAATATA
1 ATATAA-AT-AAAATATA
142449 ATATAAATAAAATATA
1 ATATAAATAAAATATA
*
142465 TTAATAAATA
1 AT-ATAAATA
142475 TGAAATTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 9 0.38
17 9 0.38
18 6 0.25
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (16 bp):
ATATAAATAAAATATA
Found at i:150007 original size:2 final size:2
Alignment explanation
Indices: 150002--150032 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
149992 GGCTGCGCGC
150002 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
150033 CATTGACATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:152330 original size:2 final size:2
Alignment explanation
Indices: 152323--152354 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
152313 AATATAGCGC
152323 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
152355 CTATCTATCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:152713 original size:53 final size:55
Alignment explanation
Indices: 152636--152840 Score: 164
Period size: 53 Copynumber: 3.8 Consensus size: 55
152626 ATATTAATAT
*
152636 AATATAAA-A-AATTTAA-TTAAAATATTATATAATATATAATATATTATTTAAA
1 AATATAAATATAATATAATTTAAAATATTATATAATATATAATATATTATTTAAA
* * **
152688 AATATAAAT-TAATATAA-TTAAAATATTATATAAAATATCATACGTTA-TTAAA
1 AATATAAATATAATATAATTTAAAATATTATATAATATATAATATATTATTTAAA
* *
152740 ATATATAAATATAAAAATAAGTT--AATA-TATATAATATA-AAT-TATTAATATATAAA
1 A-ATATAAATAT-AATATAATTTAAAATATTATATAATATATAATATATT-AT-T-TAAA
*
152795 AATTTAAATATATATATTATATTTTAAATATATT-TATAATATATAA
1 AATATAAATATA-ATA-TA-A-TTTAAA-ATATTATATAATATATAA
152841 AAATATAAAA
Statistics
Matches: 121, Mismatches: 13, Indels: 29
0.74 0.08 0.18
Matches are distributed among these distances:
51 2 0.02
52 17 0.14
53 51 0.42
54 17 0.14
55 13 0.11
56 3 0.02
57 2 0.02
59 1 0.01
60 12 0.10
61 3 0.02
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (55 bp):
AATATAAATATAATATAATTTAAAATATTATATAATATATAATATATTATTTAAA
Found at i:152789 original size:18 final size:16
Alignment explanation
Indices: 152768--152810 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
152758 AAGTTAATAT
*
152768 ATATAATATAAATTATTA
1 ATAT-ATATAAATT-TAA
*
152786 ATATATAAAAATTTAA
1 ATATATATAAATTTAA
152802 ATATATATA
1 ATATATATA
152811 TTATATTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 10 0.45
17 8 0.36
18 4 0.18
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATATATAAATTTAA
Found at i:152790 original size:38 final size:39
Alignment explanation
Indices: 152738--152815 Score: 97
Period size: 38 Copynumber: 2.0 Consensus size: 39
152728 TACGTTATTA
152738 AAATATATAAATATAAAAATAAGTT-AATATATATAATAT
1 AAATATATAAATATAAAAA-AAGTTAAATATATATAATAT
* * * *
152777 AAAT-TATTAATATATAAAAATTTAAATATATATATTAT
1 AAATATATAAATATAAAAAAAGTTAAATATATATAATAT
152815 A
1 A
152816 TTTTAAATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
37 4 0.12
38 26 0.76
39 4 0.12
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (39 bp):
AAATATATAAATATAAAAAAAGTTAAATATATATAATAT
Found at i:152791 original size:22 final size:24
Alignment explanation
Indices: 152732--152859 Score: 81
Period size: 22 Copynumber: 5.4 Consensus size: 24
152722 ATATCATACG
*
152732 TTATTAAAATATATAAATATAAAAA
1 TTATTAATATATATAAATAT-AAAA
*
152757 TAAGTTAATATATAT-AATAT-AAA
1 TTA-TTAATATATATAAATATAAAA
* *
152780 TTATTAATATATAAAAAT-TTAAA
1 TTATTAATATATATAAATATAAAA
* * *
152803 TATATATATTATATTTTAAATAT--AT
1 T-TAT-TAATATA-TATAAATATAAAA
*
152828 TTA-TAATATATAAAAATATAAAAA
1 TTATTAATATATATAAATAT-AAAA
152852 TT-TTAATA
1 TTATTAATA
152860 CGAATTAATA
Statistics
Matches: 80, Mismatches: 12, Indels: 23
0.70 0.10 0.20
Matches are distributed among these distances:
21 7 0.09
22 17 0.21
23 12 0.15
24 13 0.16
25 15 0.19
26 15 0.19
27 1 0.01
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (24 bp):
TTATTAATATATATAAATATAAAA
Found at i:152836 original size:20 final size:20
Alignment explanation
Indices: 152786--152836 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
152776 TAAATTATTA
* *
152786 ATATATAAAAATTTAAATAT
1 ATATATAATATTTTAAATAT
*
152806 ATATATTATATTTTAAATAT
1 ATATATAATATTTTAAATAT
*
152826 ATTTATAATAT
1 ATATATAATAT
152837 ATAAAAATAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATATAATATTTTAAATAT
Done.