genome.fa.s597.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold597
Parameters: 2 7 7 80 10 50 1000
Length:  93966

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2119--2170	20	2.5	20	84	3	68	42	9	15	32	1.79
2279--2333	20	2.8	20	91	0	92	32	14	10	41	1.81
9096--9215	52	2.3	52	95	0	213	29	16	18	35	1.93
9087--9235	52	2.9	51	86	4	201	31	15	17	35	1.91
9224--9248	13	1.9	13	100	0	50	36	16	16	32	1.90
9288--9357	33	2.1	33	89	0	104	40	14	11	34	1.82
9313--9337	13	1.9	13	100	0	50	32	16	16	36	1.90
11474--11563	45	2.0	45	88	0	135	42	22	13	22	1.88
11875--11905	12	2.6	12	94	0	53	0	16	0	83	0.64
13989--14023	13	2.7	13	95	0	61	22	14	22	40	1.90
15539--15593	11	5.2	11	80	8	51	49	0	16	34	1.46
19124--19192	27	2.6	27	86	4	86	24	37	20	17	1.93
23966--24013	17	2.9	16	90	6	69	83	16	0	0	0.65
23967--24013	16	2.9	16	84	12	69	82	17	0	0	0.66
27893--28041	52	2.9	51	89	4	235	30	17	18	32	1.94
28095--28161	33	2.0	33	88	0	98	40	14	11	32	1.83
28117--28141	13	1.9	13	100	0	50	32	16	16	36	1.90
28831--29383	30	17.7	31	79	7	505	24	28	14	32	1.94
28831--29602	61	12.4	62	78	9	531	23	29	13	33	1.93
28831--29376	187	2.9	186	86	3	722	24	28	13	32	1.94
28831--29383	92	5.9	93	79	7	568	24	28	14	32	1.94
29453--29576	33	4.2	27	83	13	117	19	33	12	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29330--29675	34	10.8	33	78	13	339	20	31	13	34	1.91
29385--29673	66	4.5	62	79	11	266	20	32	12	34	1.90
29728--30062	39	7.9	39	69	16	211	26	26	19	26	1.99
29680--30111	87	5.0	87	90	0	675	26	26	19	28	1.99
30038--30457	49	8.4	49	80	4	392	24	25	17	32	1.97
33478--33530	19	2.7	20	88	8	81	28	11	15	45	1.80
34666--34717	27	1.9	27	96	0	95	19	30	19	30	1.96
34778--34845	27	2.5	27	80	4	84	25	39	16	19	1.91
40289--40361	20	3.7	19	87	7	85	38	16	16	28	1.90
43753--43830	25	3.1	25	96	0	147	23	19	14	43	1.87
45913--45987	20	3.8	20	85	0	105	33	14	12	40	1.83
49264--50303	452	2.3	455	84	4	1357	40	12	14	32	1.83
53393--53432	2	21.0	2	85	10	57	47	0	2	50	1.14
54278--54305	2	14.0	2	100	0	56	50	0	0	50	1.00
54570--54600	2	15.5	2	100	0	62	0	48	0	51	1.00
58542--58575	2	17.0	2	100	0	68	0	50	0	50	1.00
60416--60441	12	2.2	12	100	0	52	0	23	0	76	0.78
69186--69228	18	2.4	17	81	11	50	32	6	2	58	1.38
72899--72941	20	2.0	22	86	8	63	48	9	2	39	1.48
72960--73034	20	3.6	20	79	13	80	32	16	16	36	1.90
72957--73014	20	2.8	21	84	12	84	34	15	15	34	1.89
72957--73036	43	1.9	42	87	5	117	32	15	15	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74482--74524	15	2.8	16	85	7	61	34	0	2	62	1.08
87539--87589	7	7.1	7	80	10	59	43	3	1	50	1.31

Tables:   1

The End!