genome.fa.s598.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold598
Parameters: 2 7 7 80 10 50 1000
Length:  66628

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3861--3917	6	8.4	7	74	18	50	40	0	0	59	0.97
3864--3922	20	3.0	20	83	9	61	44	0	0	55	0.99
3876--3942	27	2.6	26	79	11	66	46	0	0	53	1.00
6486--6534	11	4.3	11	78	19	55	57	0	2	40	1.10
6608--6652	20	2.1	22	88	8	67	62	4	0	33	1.15
6738--7055	160	2.0	161	91	0	512	26	22	17	32	1.97
12068--12117	12	3.9	13	82	15	52	40	0	0	60	0.97
12093--12128	17	2.1	18	89	5	56	50	0	2	47	1.15
12085--12136	24	2.2	24	82	6	61	51	0	1	46	1.12
12750--12774	3	8.3	3	100	0	50	36	0	0	64	0.94
12916--12957	22	2.0	22	86	9	61	40	0	0	59	0.97
16721--16938	34	6.5	34	85	5	282	40	27	7	24	1.82
16719--16938	67	3.3	67	88	1	323	40	27	7	24	1.82
21354--21571	34	6.5	34	84	5	273	40	27	7	24	1.81
21352--21571	67	3.3	67	87	1	314	40	27	7	24	1.81
22084--22172	27	3.5	27	71	13	80	60	3	0	35	1.13
22120--22202	31	2.6	33	76	21	97	61	0	0	38	0.96
22184--22223	19	2.2	18	86	4	53	62	2	0	35	1.09
25126--25169	22	2.0	22	87	12	65	63	0	0	36	0.95
25126--25172	20	2.3	21	85	3	60	61	0	0	38	0.96
26420--26448	2	14.5	2	100	0	58	48	0	0	51	1.00
26484--26531	16	3.0	16	78	6	53	66	0	4	29	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27053--27104	14	3.2	18	66	25	51	57	0	1	40	1.10
27057--27104	13	3.3	13	75	25	51	60	0	2	37	1.09
27065--27126	18	3.3	17	80	17	61	64	0	1	33	1.03
27386--27423	20	1.9	20	89	10	60	39	0	0	60	0.97
27432--27472	18	2.3	18	87	8	57	70	0	0	29	0.87
27470--27535	24	2.8	24	82	11	75	51	3	1	43	1.26
27487--27535	23	2.1	24	88	7	75	57	0	0	42	0.99
31092--31116	12	2.1	12	100	0	50	44	16	0	40	1.47
32712--32750	17	2.4	17	86	4	53	43	0	2	53	1.14
34688--34732	22	2.0	23	83	8	58	46	0	0	53	1.00
35065--35096	2	16.0	2	100	0	64	50	0	0	50	1.00
35450--35515	6	9.4	7	78	16	50	43	4	0	51	1.22
35480--35513	2	17.0	2	100	0	68	50	0	0	50	1.00
36727--36845	35	3.2	35	68	20	98	44	0	3	52	1.17
36717--36858	42	3.6	42	80	13	201	44	0	2	52	1.15
36717--36875	77	2.1	76	97	1	300	44	0	3	51	1.19
38592--38633	21	2.0	20	82	13	50	57	0	0	42	0.99
40110--40143	2	16.5	2	87	6	50	47	0	2	50	1.16
40558--40596	14	2.7	14	88	4	51	48	0	2	48	1.15
40689--40760	28	2.6	29	86	10	105	56	0	0	43	0.99
41399--41429	16	1.9	16	93	0	53	77	0	3	19	0.90
41436--41541	48	2.2	47	80	11	110	47	1	7	43	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41703--41775	31	2.4	29	95	4	128	6	17	0	75	1.02
41703--41775	29	2.4	31	93	4	123	6	17	0	75	1.02
42168--42203	11	3.0	12	92	8	56	33	0	0	66	0.92
43000--43432	217	2.0	214	82	6	516	33	19	19	27	1.96
45470--45664	16	12.0	16	67	26	74	41	1	5	52	1.33
45470--45664	15	13.0	15	69	16	86	41	1	5	52	1.33
45537--45561	13	1.9	13	100	0	50	44	0	0	56	0.99
45602--45693	25	3.8	25	80	12	84	41	0	3	55	1.16
45627--45664	17	2.3	17	95	4	69	42	0	0	57	0.98
45632--45696	6	10.8	6	75	15	55	46	0	0	53	1.00
47603--47646	22	2.0	21	86	8	61	40	0	0	59	0.98
47589--47646	23	2.6	22	81	8	64	44	0	0	55	0.99
48775--48799	3	8.3	3	100	0	50	68	0	32	0	0.90
49048--49115	25	2.7	25	77	20	63	35	0	5	58	1.22
49512--49574	20	2.9	21	76	13	65	57	7	3	31	1.43
52213--52242	2	15.0	2	100	0	60	50	0	0	50	1.00
58865--58917	26	2.0	26	85	7	72	56	0	0	43	0.99
59178--59223	20	2.4	19	86	13	67	60	4	0	34	1.16
59236--59274	17	2.3	17	86	8	53	46	0	5	48	1.24
61847--61884	2	20.0	2	84	10	53	52	0	0	47	1.00
63967--64019	20	2.6	21	80	14	58	67	0	1	30	1.01
64891--64962	28	2.5	28	78	17	67	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64891--64948	25	2.5	22	82	17	66	36	0	0	63	0.94
64891--64955	23	2.8	23	84	13	73	35	0	0	64	0.94
64889--64963	23	3.5	23	69	18	63	37	0	0	62	0.95
64877--64965	30	3.0	28	84	12	92	37	0	1	61	1.03
65329--65563	132	1.8	131	81	10	302	36	10	12	40	1.78
66459--66530	33	2.2	33	85	7	92	68	0	1	30	0.99

Tables:   1

The End!