Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold606
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61466
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33
Found at i:466 original size:19 final size:19
Alignment explanation
Indices: 442--481 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
432 TTAGGATAGG
442 TTCACCTATCTATGATCGT
1 TTCACCTATCTATGATCGT
461 TTCACCTATCTATGATCGT
1 TTCACCTATCTATGATCGT
480 TT
1 TT
482 TTAAGTCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.20, C:0.25, G:0.10, T:0.45
Consensus pattern (19 bp):
TTCACCTATCTATGATCGT
Found at i:2568 original size:13 final size:13
Alignment explanation
Indices: 2550--2574 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2540 ATAATGCACA
2550 GTATCGATACATT
1 GTATCGATACATT
2563 GTATCGATACAT
1 GTATCGATACAT
2575 GACCACTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:6503 original size:14 final size:14
Alignment explanation
Indices: 6484--6516 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
6474 CATTTGGATG
6484 TAAATGTTTTGTTT
1 TAAATGTTTTGTTT
6498 TAAATGTTTTGTTT
1 TAAATGTTTTGTTT
6512 TAAAT
1 TAAAT
6517 AATGGAAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.61
Consensus pattern (14 bp):
TAAATGTTTTGTTT
Found at i:8876 original size:13 final size:13
Alignment explanation
Indices: 8858--8896 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
8848 CAGCATTCTC
8858 TGTATCGATACAT
1 TGTATCGATACAT
*
8871 TGTATCGATACAC
1 TGTATCGATACAT
*
8884 TGTATCAATACAT
1 TGTATCGATACAT
8897 GGCAATTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:11382 original size:13 final size:13
Alignment explanation
Indices: 11364--11388 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11354 ATAATGCACA
11364 GTATCGATACATT
1 GTATCGATACATT
11377 GTATCGATACAT
1 GTATCGATACAT
11389 GACCACTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:11385 original size:33 final size:31
Alignment explanation
Indices: 11343--11410 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 31
11333 CACCTTCAGA
*
11343 TGTATCGATACATAATGCACAGTATCGATACAT
1 TGTATCGATACATAA-CCACAGTATCGATAC-T
* *
11376 TGTATCGATACATGACCACTGTATCGATACT
1 TGTATCGATACATAACCACAGTATCGATACT
11407 TGTA
1 TGTA
11411 CTTGCAAAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
31 5 0.16
32 13 0.41
33 14 0.44
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32
Consensus pattern (31 bp):
TGTATCGATACATAACCACAGTATCGATACT
Found at i:11526 original size:33 final size:32
Alignment explanation
Indices: 11463--11530 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 32
11453 CCTTGACTAT
*
11463 TTGTATCGATACATACAAGATGTATTGATACA
1 TTGTATCGATACATACAAGATGTATCGATACA
11495 TTGTATCGATACATGACCAA-ATGTATCGATACA
1 TTGTATCGATACAT-A-CAAGATGTATCGATACA
11528 TTG
1 TTG
11531 GCTTGTAACG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 14 0.42
33 16 0.48
34 3 0.09
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (32 bp):
TTGTATCGATACATACAAGATGTATCGATACA
Found at i:13164 original size:11 final size:11
Alignment explanation
Indices: 13148--13182 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
13138 ATCAATAAAT
13148 TTTTATTTTTA
1 TTTTATTTTTA
13159 TTTTATTTTTA
1 TTTTATTTTTA
13170 -TTT-TTTTTA
1 TTTTATTTTTA
13179 TTTT
1 TTTT
13183 TTAACATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 6 0.26
10 6 0.26
11 11 0.48
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:13183 original size:6 final size:6
Alignment explanation
Indices: 13146--13174 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
13136 AAATCAATAA
13146 ATTTTT ATTTTT A-TTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
13175 TTTATTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
ATTTTT
Found at i:14022 original size:13 final size:13
Alignment explanation
Indices: 14004--14029 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13994 CAATTTTTGG
14004 TGTATCGATACAT
1 TGTATCGATACAT
14017 TGTATCGATACAT
1 TGTATCGATACAT
14030 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:14041 original size:32 final size:33
Alignment explanation
Indices: 13984--14047 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
13974 TACAAGCCAA
**
13984 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
14017 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
14048 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:14054 original size:19 final size:18
Alignment explanation
Indices: 13984--14054 Score: 62
Period size: 19 Copynumber: 4.0 Consensus size: 18
13974 TACAAGCCAA
13984 TGTATCGATACAATTTTTGG
1 TGTATCGATACAA--TTTGG
14004 TGTATCGATAC-A--T--
1 TGTATCGATACAATTTGG
*
14017 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
14036 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
14055 CTACTGCCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 15
0.73 0.02 0.25
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 1 0.02
18 1 0.02
19 17 0.40
20 11 0.26
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:14767 original size:21 final size:21
Alignment explanation
Indices: 14726--14769 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
14716 CTCTCCTTTA
* *
14726 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATGAATAAT
14747 TCTCCCCC-TTAATGAAGTAAT
1 TCTCCCCCGTTAATGAA-TAAT
14768 TC
1 TC
14770 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.30, G:0.07, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATGAATAAT
Found at i:16121 original size:21 final size:20
Alignment explanation
Indices: 16092--16134 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
16082 GGCTAGTATG
* *
16092 GGGACTGCCCGGTTGCGACCT
1 GGGACTG-CCGGTCGCAACCT
*
16113 GGGAGTGCCGGTCGCAACCT
1 GGGACTGCCGGTCGCAACCT
16133 GG
1 GG
16135 TGGTGCTGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.12, C:0.30, G:0.42, T:0.16
Consensus pattern (20 bp):
GGGACTGCCGGTCGCAACCT
Found at i:16585 original size:13 final size:13
Alignment explanation
Indices: 16567--16591 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16557 ATAATCCCGC
16567 TGTATCGATACAT
1 TGTATCGATACAT
16580 TGTATCGATACA
1 TGTATCGATACA
16592 AAGAAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:20530 original size:21 final size:21
Alignment explanation
Indices: 20501--20545 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
20491 AAGTTTTTAT
*
20501 TTTTCTTAGCTAA-TTCATTA
1 TTTTCTTAGCCAAGTTCATTA
*
20521 TTTTCATTAGCCAAGTTCTTTA
1 TTTTC-TTAGCCAAGTTCATTA
20543 TTT
1 TTT
20546 CAACTTGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 7 0.33
22 9 0.43
ACGTcount: A:0.22, C:0.16, G:0.07, T:0.56
Consensus pattern (21 bp):
TTTTCTTAGCCAAGTTCATTA
Found at i:20545 original size:22 final size:21
Alignment explanation
Indices: 20490--20545 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
20480 ATGAATCATG
20490 CAAGTT-TTTATTTTTCTTAGC
1 CAAGTTCTTTA-TTTTCTTAGC
* *
20511 TAA-TTCATTATTTTCATTAGC
1 CAAGTTCTTTATTTTC-TTAGC
20532 CAAGTTCTTTATTT
1 CAAGTTCTTTATTT
20546 CAACTTGTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
20 7 0.25
21 12 0.43
22 9 0.32
ACGTcount: A:0.23, C:0.14, G:0.07, T:0.55
Consensus pattern (21 bp):
CAAGTTCTTTATTTTCTTAGC
Found at i:22782 original size:13 final size:13
Alignment explanation
Indices: 22764--22789 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22754 CAATTTTTGG
22764 TGTATCGATACAT
1 TGTATCGATACAT
22777 TGTATCGATACAT
1 TGTATCGATACAT
22790 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:22801 original size:32 final size:33
Alignment explanation
Indices: 22744--22807 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
22734 TACAAGCCAA
**
22744 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
22777 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
22808 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:22814 original size:19 final size:18
Alignment explanation
Indices: 22744--22814 Score: 62
Period size: 19 Copynumber: 4.0 Consensus size: 18
22734 TACAAGCCAA
22744 TGTATCGATACAATTTTTGG
1 TGTATCGATACAA--TTTGG
22764 TGTATCGATAC-A--T--
1 TGTATCGATACAATTTGG
*
22777 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
22796 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
22815 CTACTGCCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 15
0.73 0.02 0.25
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 1 0.02
18 1 0.02
19 17 0.40
20 11 0.26
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:24297 original size:16 final size:16
Alignment explanation
Indices: 24278--24316 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
24268 ACATTTTTAG
*
24278 GTTCAGGCCTTTTCAA
1 GTTCAGACCTTTTCAA
*
24294 GTTCAAACCTTTTCAA
1 GTTCAGACCTTTTCAA
24310 GTTCAGA
1 GTTCAGA
24317 TTTTTTCGAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (16 bp):
GTTCAGACCTTTTCAA
Found at i:25795 original size:20 final size:22
Alignment explanation
Indices: 25770--25814 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
25760 AAAACTTCTT
25770 TATGTGTGTATAT-ATAT-ATA
1 TATGTGTGTATATAATATAATA
*
25790 TATGTGTGTGTATAATATAATA
1 TATGTGTGTATATAATATAATA
25812 TAT
1 TAT
25815 ATTATAAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 12 0.55
21 4 0.18
22 6 0.27
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.49
Consensus pattern (22 bp):
TATGTGTGTATATAATATAATA
Found at i:25800 original size:22 final size:24
Alignment explanation
Indices: 25772--25816 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 24
25762 AACTTCTTTA
25772 TGTGTGTAT-ATAT-ATATATATG
1 TGTGTGTATAATATAATATATATG
25794 TGTGTGTATAATATAATATATAT
1 TGTGTGTATAATATAATATATAT
25817 TATAAAGTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 9 0.43
23 4 0.19
24 8 0.38
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.49
Consensus pattern (24 bp):
TGTGTGTATAATATAATATATATG
Found at i:26680 original size:22 final size:22
Alignment explanation
Indices: 26653--26695 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
26643 AAAGCTCAGA
26653 ATATAATTTAATTTTTAATAAT
1 ATATAATTTAATTTTTAATAAT
* *
26675 ATATAATTTACTTTTTGATAA
1 ATATAATTTAATTTTTAATAA
26696 ATTACTATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
ATATAATTTAATTTTTAATAAT
Found at i:26974 original size:13 final size:14
Alignment explanation
Indices: 26945--26976 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
26935 GTTCGAGCAA
26945 TTTTAAGTTTAATT
1 TTTTAAGTTTAATT
*
26959 TTTTAGGTTTAATT
1 TTTTAAGTTTAATT
26973 TTTT
1 TTTT
26977 TGAATTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.09, T:0.69
Consensus pattern (14 bp):
TTTTAAGTTTAATT
Found at i:27933 original size:22 final size:23
Alignment explanation
Indices: 27908--27971 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
27898 GCGTGCGTAT
27908 ATATATTT-TATATTTAAATTTA
1 ATATATTTATATATTTAAATTTA
* *
27930 ATATATTTATGTATTTAATTTTA
1 ATATATTTATATATTTAAATTTA
* *
27953 TTTATATTAATAT-TTTAAA
1 -ATATATTTATATATTTAAA
27972 GTAAATTTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
22 8 0.24
23 17 0.50
24 9 0.26
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (23 bp):
ATATATTTATATATTTAAATTTA
Found at i:27933 original size:24 final size:23
Alignment explanation
Indices: 27906--27967 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 23
27896 ACGCGTGCGT
*
27906 ATATATATTTTATATTTAAATTTA
1 ATATATATTATATATTT-AATTTA
* *
27930 ATATAT-TTATGTATTTAATTTT
1 ATATATATTATATATTTAATTTA
*
27952 ATTTATATTA-ATATTT
1 ATATATATTATATATTT
27968 TAAAGTAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
22 15 0.47
23 11 0.34
24 6 0.19
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (23 bp):
ATATATATTATATATTTAATTTA
Found at i:28343 original size:16 final size:16
Alignment explanation
Indices: 28324--28406 Score: 123
Period size: 16 Copynumber: 5.1 Consensus size: 16
28314 AATTAATTTA
28324 TTAAATTATTTTAAAT
1 TTAAATTATTTTAAAT
* *
28340 TTAAATTTTTTTATAT
1 TTAAATTATTTTAAAT
28356 TTAAATTATTTTAAAT
1 TTAAATTATTTTAAAT
28372 TTAAATTATTTTTAAAT
1 TTAAATTA-TTTTAAAT
28389 TTAAA-TATATTTAAAT
1 TTAAATTAT-TTTAAAT
28405 TT
1 TT
28407 TTGAAATAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
15 1 0.02
16 47 0.77
17 13 0.21
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTAAATTATTTTAAAT
Found at i:28616 original size:21 final size:22
Alignment explanation
Indices: 28574--28613 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
28564 TTTTTAATCA
*
28574 AAAGTTAAAATTATATATTTAT
1 AAAGTTAAAATAATATATTTAT
28596 AAAG-TAAAATAATA-ATTT
1 AAAGTTAAAATAATATATTT
28614 TATCTTGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 9 0.53
22 4 0.24
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (22 bp):
AAAGTTAAAATAATATATTTAT
Found at i:29670 original size:18 final size:19
Alignment explanation
Indices: 29644--29681 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
29634 TTATAATCAA
*
29644 TTATTTAAC-AAATTAATT
1 TTATCTAACAAAATTAATT
29662 TTATCTAACAAAATTAATT
1 TTATCTAACAAAATTAATT
29681 T
1 T
29682 ATATTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (19 bp):
TTATCTAACAAAATTAATT
Found at i:43416 original size:13 final size:13
Alignment explanation
Indices: 43398--43422 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
43388 AATGCCTGAA
43398 TGTATCGATACAT
1 TGTATCGATACAT
43411 TGTATCGATACA
1 TGTATCGATACA
43423 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:45388 original size:2 final size:2
Alignment explanation
Indices: 45381--45405 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
45371 CAACGTGCAA
45381 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
45406 AACAATTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:45570 original size:153 final size:148
Alignment explanation
Indices: 45252--45542 Score: 473
Period size: 153 Copynumber: 2.0 Consensus size: 148
45242 AAATAGAAAG
** *
45252 AAACAATTGCAAAACCCAAAAGAACACATGTTCAAATTGCAAAAAGGAAAACTTTAATGTCCTTG
1 AAACAATTGCAAAAGTCAAAAGAACACATATTCAAATTGCAAAAAGGAAAACTTTAATGTCCTTG
45317 GTGCAACGTGCAAGAAATATATATATATATATATATATAATAATGTCCTTGGTGCAACGTGCAAA
66 GTGCAACGTGCAAG----A-ATATATATATATATATATAATAATGTCCTTGGTGCAACGTGCAAA
*
45382 TATATATATATATATATATATAT
126 TATATATATATATATATATATAA
45405 AAACAATTGCAAAAGTCAAAAGAACACATATTCAAATTGCAAAAAGGAAAACTTTAATGTCCTTG
1 AAACAATTGCAAAAGTCAAAAGAACACATATTCAAATTGCAAAAAGGAAAACTTTAATGTCCTTG
45470 GTGCAA-GTGCAAG-A-ATATATATATATATAT-ATAATGTCCTTGGTGCAACGTGCAAATATAT
66 GTGCAACGTGCAAGAATATATATATATATATATAATAATGTCCTTGGTGCAACGTGCAAATATAT
45531 ATATATATATAT
131 ATATATATATAT
45543 TTATTTGAAA
Statistics
Matches: 135, Mismatches: 3, Indels: 9
0.92 0.02 0.06
Matches are distributed among these distances:
144 43 0.32
145 16 0.12
146 1 0.01
152 7 0.05
153 68 0.50
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.30
Consensus pattern (148 bp):
AAACAATTGCAAAAGTCAAAAGAACACATATTCAAATTGCAAAAAGGAAAACTTTAATGTCCTTG
GTGCAACGTGCAAGAATATATATATATATATATAATAATGTCCTTGGTGCAACGTGCAAATATAT
ATATATATATATATATAA
Found at i:49232 original size:130 final size:131
Alignment explanation
Indices: 49083--49452 Score: 458
Period size: 131 Copynumber: 2.8 Consensus size: 131
49073 AAATTGATGC
* * * *
49083 TTTAGAAATAAGGCCGGGGTTGAAGTATCCCCGCAAAAATAACGGAG-TTGGAGTATCCCCGATT
1 TTTAGAAATAAAGCCGGGGTTGGAGTATCCCCTCGAAAATAACGGAGATTGGAGTATCCCCGATT
* * ** * *
49147 GTGAAAAATTGGTGTTTTAGAAATCAAATAGGGGTTGGAGTATTTTTGATTGTGAGAAATCAAAA
66 ATGAAAAATTGGTGTTTTAGAAATAAAATAGGGGTTGGAGTATCCTCGATTGTAAGAAATCAAAA
49212 T
131 T
* *** * *
49213 TTTAGAAATAAAGTCGGGGTTGGAGTATCATTTCGGAAATAAC-GAGATTGGAGTATCTCCGATT
1 TTTAGAAATAAAGCCGGGGTTGGAGTATCCCCTCGAAAATAACGGAGATTGGAGTATCCCCGATT
* * * *
49277 ATGAAAAGATTGGTGTTTTAGAAATAAAATTGAGGTTGAAGTATCCTCGATTGTAAGAAATCAAT
66 ATGAAAA-ATTGGTGTTTTAGAAATAAAATAGGGGTTGGAGTATCCTCGATTGTAAGAAATCAAA
49342 AT
130 AT
* * * *
49344 TTTAAAAATATAGCCGGGGTTGGAGTATCCCCTCGAAAATAA-GGCGATTGGAGTATCCCCAATT
1 TTTAGAAATAAAGCCGGGGTTGGAGTATCCCCTCGAAAATAACGGAGATTGGAGTATCCCCGATT
* * * *
49408 ATGAAAAATTGATGTTTTGGAAATAAAATCGGAGTTGGAGTATCC
66 ATGAAAAATTGGTGTTTTAGAAATAAAATAGGGGTTGGAGTATCC
49453 CTGAGATGAA
Statistics
Matches: 201, Mismatches: 36, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
129 3 0.01
130 88 0.44
131 110 0.55
ACGTcount: A:0.35, C:0.11, G:0.25, T:0.30
Consensus pattern (131 bp):
TTTAGAAATAAAGCCGGGGTTGGAGTATCCCCTCGAAAATAACGGAGATTGGAGTATCCCCGATT
ATGAAAAATTGGTGTTTTAGAAATAAAATAGGGGTTGGAGTATCCTCGATTGTAAGAAATCAAAA
T
Found at i:51813 original size:13 final size:13
Alignment explanation
Indices: 51792--51821 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
51782 GTAAACCCAA
51792 AATGCATCGATAC
1 AATGCATCGATAC
*
51805 AATGTATCGATAC
1 AATGCATCGATAC
51818 AATG
1 AATG
51822 AATAATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.27
Consensus pattern (13 bp):
AATGCATCGATAC
Found at i:51830 original size:20 final size:20
Alignment explanation
Indices: 51803--51859 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
51793 ATGCATCGAT
51803 ACAATGTATCGATACAATGA
1 ACAATGTATCGATACAATGA
*
51823 ATAATGTATCGATACAATGA
1 ACAATGTATCGATACAATGA
*
51843 ACAATGTATAGATACAA
1 ACAATGTATCGATACAA
51860 ACTGTGAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.26
Consensus pattern (20 bp):
ACAATGTATCGATACAATGA
Found at i:55504 original size:2 final size:2
Alignment explanation
Indices: 55499--55527 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
55489 ACACACACAC
55499 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
55528 TTAAGGTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:57099 original size:130 final size:129
Alignment explanation
Indices: 56914--57267 Score: 390
Period size: 130 Copynumber: 2.7 Consensus size: 129
56904 ATAAAATCGG
* * *** *
56914 GGTTGGAGTATCCCCTTGGAAATAACAGGGTTGGAGTATCCTTAATTAT-AGAAAATTGGTATTT
1 GGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGA-AAAATTGGTGTTT
* * * * * *
56978 TAGAAATAAGGCCGGGGTTGAAATATCCCTGATTGT-GAGAAATCAATATTTTGGAAATAAAGCC
65 TAGAAATAA-ACCGGGGTTGGAGTATCCCCGATTGTGGAG-AATCAATATTTTAGAAATAAAACC
57042 AA
128 AA
* *
57044 GGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTT
1 GGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTT
* ** *** * *
57109 -GAAAATGAAATCGGAATTGGAGTATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAACCG
66 AG-AAAT-AAACCGGGGTTGGAGTATCCCCGATTGTGGAGAATCAATATTTTAGAAATAAAACCA
*
57173 G
129 A
* * * *
57174 GGTTGGAGTATCCCCTCGAAAATAACGAGGTTGGAATATCCCCGATTATGAAAAATTGATGTTTT
1 GGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTT
57239 AGAAATAAAACCGGGGTTGGAGTATCCCC
66 AGAAAT-AAACCGGGGTTGGAGTATCCCC
57268 TCGAAAATAA
Statistics
Matches: 186, Mismatches: 33, Indels: 10
0.81 0.14 0.04
Matches are distributed among these distances:
129 1 0.01
130 178 0.96
131 7 0.04
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.29
Consensus pattern (129 bp):
GGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTT
AGAAATAAACCGGGGTTGGAGTATCCCCGATTGTGGAGAATCAATATTTTAGAAATAAAACCAA
Found at i:57140 original size:51 final size:51
Alignment explanation
Indices: 57074--57188 Score: 151
Period size: 51 Copynumber: 2.3 Consensus size: 51
57064 AATAACGGGG
* *
57074 TTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTT-GAAAATGAAATCGGAA
1 TTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAG-AAATAAAACCGGAA
* * * **
57125 TTGGAGTATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAACCGGGG
1 TTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAACCGGAA
57176 TTGGAGTATCCCC
1 TTGGAGTATCCCC
57189 TCGAAAATAA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
51 55 0.98
52 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (51 bp):
TTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAACCGGAA
Found at i:57214 original size:79 final size:78
Alignment explanation
Indices: 57125--57425 Score: 388
Period size: 79 Copynumber: 3.8 Consensus size: 78
57115 GAAATCGGAA
* * **
57125 TTGGAGTATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCT
1 TTGGAGTATCCCCGATTAT-GAAAATTAATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCT
57190 CGAAAATAACGAGG
65 CGAAAATAACGAGG
* *
57204 TTGGAATATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCT
1 TTGGAGTATCCCCGATTATG-AAAATTAATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCT
57269 CGAAAATAAC-AGGG
65 CGAAAATAACGA-GG
* * *
57283 TTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAATCGGGGTTGGAGTGTCCCCT
1 TTGGAGTATCCCCGATTATGA-AAATTAATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCT
*
57348 CGAAAATAACGGGG
65 CGAAAATAACGAGG
* * * * * ** *
57362 TTGGAGTATCCCCAATTGTGAAAAGTCAGTGTTTTGGAAATAAAATTGGAGTTGGAGTATCCCC
1 TTGGAGTATCCCCGATTATGAAAA-TTAATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCC
57426 GATTATGGAA
Statistics
Matches: 198, Mismatches: 19, Indels: 10
0.87 0.08 0.04
Matches are distributed among these distances:
78 6 0.03
79 192 0.97
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.28
Consensus pattern (78 bp):
TTGGAGTATCCCCGATTATGAAAATTAATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTC
GAAAATAACGAGG
Found at i:57416 original size:51 final size:51
Alignment explanation
Indices: 57361--57527 Score: 169
Period size: 51 Copynumber: 3.3 Consensus size: 51
57351 AAATAACGGG
* * *
57361 GTTGGAGTATCCCCAATTGT-GAAAAGTCAGTGTTTTGGAAATAAAATTGGA
1 GTTGGAGTATCCCCAATTATGGAAAA-TCAGTGTTTTAGAAATAAAATCGGA
* **
57412 GTTGGAGTATCCCCGATTATGGAAAATGGGTGTTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCAATTATGGAAAATCAGTGTTTTAGAAATAAAATCGGA
* * * * * * *
57463 GTTGGAGTATCCCCGATTAAGAAAAAATGA-TGTTTTGGAAATGAAACCGG-
1 GTTGGAGTATCCCCAATTATG-GAAAATCAGTGTTTTAGAAATAAAATCGGA
57513 GATTGGAGTATCCCC
1 G-TTGGAGTATCCCC
57528 GAGATGAAAA
Statistics
Matches: 101, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
50 1 0.01
51 89 0.88
52 11 0.11
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (51 bp):
GTTGGAGTATCCCCAATTATGGAAAATCAGTGTTTTAGAAATAAAATCGGA
Found at i:59839 original size:20 final size:20
Alignment explanation
Indices: 59814--59887 Score: 114
Period size: 20 Copynumber: 3.7 Consensus size: 20
59804 AAAATGCCTG
*
59814 AATGTATCGATACATTGTAA
1 AATGTATCGATACAATGTAA
*
59834 AATGTATCGATACAATG-AGC
1 AATGTATCGATACAATGTA-A
59854 AATGTATCGATACAATGTAA
1 AATGTATCGATACAATGTAA
59874 AATGTATCGATACA
1 AATGTATCGATACA
59888 TATCCTTGGC
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 1 0.02
20 47 0.96
21 1 0.02
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (20 bp):
AATGTATCGATACAATGTAA
Found at i:59943 original size:19 final size:19
Alignment explanation
Indices: 59919--59991 Score: 65
Period size: 19 Copynumber: 3.7 Consensus size: 19
59909 AGCGATACAT
*
59919 TGTATCGATATAAAACTTA
1 TGTATCGATACAAAACTTA
***
59938 TGTATCGATACAACTTTTA
1 TGTATCGATACAAAACTTA
** *
59957 TGTATCGATACAGTTACTGTT
1 TGTATCGATACA-AAACT-TA
59978 TGTATCGATACAAA
1 TGTATCGATACAAA
59992 TTGTTTGAAA
Statistics
Matches: 41, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
19 27 0.66
20 1 0.02
21 13 0.32
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:59998 original size:19 final size:19
Alignment explanation
Indices: 59938--59998 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 19
59928 ATAAAACTTA
*
59938 TGTATCGATACAACTT-TT
1 TGTATCGATACAAATTGTT
* *
59956 ATGTATCGATACAGTTACTGTT
1 -TGTATCGATACA--AATTGTT
59978 TGTATCGATACAAATTGTT
1 TGTATCGATACAAATTGTT
59997 TG
1 TG
59999 AAATTCAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
19 19 0.56
21 13 0.38
22 2 0.06
ACGTcount: A:0.28, C:0.13, G:0.16, T:0.43
Consensus pattern (19 bp):
TGTATCGATACAAATTGTT
Found at i:60365 original size:55 final size:55
Alignment explanation
Indices: 60289--60982 Score: 634
Period size: 55 Copynumber: 12.5 Consensus size: 55
60279 CATTTGATCG
*
60289 TGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGT
1 TGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGT
* * * *
60344 TGGTGGCACCTTTCAGTCCTCAAATAGCCGGACAT-TCTTTCAAAGCCCACACAA-T
1 TGGTGGCACTTTTCAGTCCTCAAAGAGCAGG--ATGCCTTTCAAAGCCCACACAAGT
*
60399 TGGTGGCA-TTTTCTAGTCCTCAAAGAGC-GGATGCCTTT-TAAGCCCACAC-AGT
1 TGGTGGCACTTTTC-AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGT
60451 T-GTGGCA-TTTTCCAGT-CTCAAAGAGCAGGATGCTTTTCTTTTCAAA-CCCACACAAGT
1 TGGTGGCACTTTT-CAGTCCTCAAAGAGCAGGATGC----C-TTTCAAAGCCCACACAAGT
* *
60508 TGGTGGCA-TTTTCCAGTCCTCAAAGTGCAGGACTGCTTTCTTTTAAAAGCCCACACAAGT
1 TGGTGGCACTTTT-CAGTCCTCAAAGAGCAGGA-TGC---C-TTTCAAAGCCCACACAAGT
*
60568 TGGTGGCACCTTTT-AGTCCTCAAAAGAGCAGGACGCCTTTCAAAG-CC-CACAAGT
1 TGGTGGCA-CTTTTCAGTCCTC-AAAGAGCAGGATGCCTTTCAAAGCCCACACAAGT
*
60622 TGGTGGCACCTTTT---TCCTCAAAGAGCAGGACGCCTTTC-AAGCCCACACAAGT
1 TGGTGGCA-CTTTTCAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGT
* * *
60674 TGGTGGCA-TTTCCAGTCCTCAAAGAGCAGCGACGCCTTTTAAAGTCCC-CACAAGT
1 TGGTGGCACTTTTCAGTCCTCAAAGAGCAG-GATGCCTTTCAAAG-CCCACACAAGT
*
60729 TGGTGGCA-TTTTCCAGTCCTCAAAGAACAGGATGCCTTTCAAAGCCCACACAAGT
1 TGGTGGCACTTTT-CAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGT
** *
60784 TGGTGG--CTTTTCAGTCCTCAAAGAGCAGGATGTTTTTTTTTCAAAGCCTACA-AAGT
1 TGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATG----CCTTTCAAAGCCCACACAAGT
* * * * *
60840 TGGTGGCCATTTTTCAGTTCT-AAAGAGCAGGACGCCTTTTCTTTTCAAGCCCACA-GAGT
1 TGGTGG-CACTTTTCAGTCCTCAAAGAGCAGGATGCC-TTTC----AAAGCCCACACAAGT
* * * *
60899 TGGTGGCAAC-TTTC-GTCTTCAAAGAGCAGGCGACGTCTTTCAAAGCCCACACGAGT
1 TGGTGGC-ACTTTTCAGTCCTCAAAGAGCA-G-GATGCCTTTCAAAGCCCACACAAGT
* *
60955 TGGTAGCACTTTTTAGTCCTCAAAGAGC
1 TGGTGGCACTTTTCAGTCCTCAAAGAGC
60983 GTGATGCACT
Statistics
Matches: 549, Mismatches: 39, Indels: 100
0.80 0.06 0.15
Matches are distributed among these distances:
50 16 0.03
51 41 0.07
52 35 0.06
53 38 0.07
54 43 0.08
55 115 0.21
56 77 0.14
57 37 0.07
58 40 0.07
59 57 0.10
60 36 0.07
61 10 0.02
62 4 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (55 bp):
TGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGT
Found at i:60941 original size:331 final size:331
Alignment explanation
Indices: 60289--60982 Score: 887
Period size: 333 Copynumber: 2.1 Consensus size: 331
60279 CATTTGATCG
* *
60289 TGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACC
1 TGGTGGCACCTTT--TTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-C
* * ** *
60354 TTTCAGTCCTCAAATAGCCGGACATTCTTTCAAAGCCCACACAATTGGTGGCATTTTCTAGTCCT
63 TTTCAGTCCTCAAAGAGCAGGACAGCCTTTCAAAGCCCACACAATTGGTGGCATTTTCCAGTCCT
* *
60419 CAAAGAGCGGATGCCTTTTAAGCCCACACAGTTGTGGCATTTTCCAGTCTCAAAGAGCAGGATGC
128 CAAAGAACGGATGCCTTTAAAGCCCACACAGTTGTGGCATTTTCCAGTCTCAAAGAGCAGGATGC
*
60484 TTTTCTTTTCAAACCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGTGCAGGACTGCTTTCT
193 TTTTCTTTTCAAACCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACTGCTTTCT
*
60549 TTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAAGAGCAGGACGCCTTTCAAAGC
258 TTTAAAAGCCCACACAAGTTGGTGGCAACTTTTAGTCCTCAAAAGAGCAGGACGCCTTTCAAAGC
60614 CCACA-AGT
323 CCACACAGT
60622 TGGTGGCACCTTTTTCCTCAAAGAGCAGGACGCCTTTC-AAGCCCACACAAGTTGGTGGCA-TTT
1 TGGTGGCACCTTTTTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTT
*
60685 CCAGTCCTCAAAGAGCAGCGAC-GCCTTTTAAAGTCCC-CACAAGTTGGTGGCATTTTCCAGTCC
66 -CAGTCCTCAAAGAGCAG-GACAGCCTTTCAAAG-CCCACACAA-TTGGTGGCATTTTCCAGTCC
60748 TCAAAGAACAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGC-TTTT-CAGTCCTCAAAGAGCA
127 TCAAAGAAC-GGATGCCTTT-AAAGCCCACAC-AGTT-GTGGCATTTTCCAGT-CTCAAAGAGCA
* * * *
60811 GGATG-TTTTTTTTTCAAAGCCTACA-AAGTTGGTGGCCATTTTTCAGTTCT-AAAGAGCAGGAC
187 GGATGCTTTTCTTTTCAAA-CCCACACAAGTTGGTGG-CATTTTCCAGTCCTCAAAGAGCAGGAC
* * * *
60873 -GCCTTTTCTTTT-CAAGCCCACA-GAGTTGGTGGCAAC-TTTCGTCTTC-AAAGAGCAGGCGAC
250 TG-C-TTTCTTTTAAAAGCCCACACAAGTTGGTGGCAACTTTTAGTCCTCAAAAGAGCA-G-GAC
*
60933 GTCTTTCAAAGCCCACACGAGT
311 GCCTTTCAAAGCCCACAC-AGT
* *
60955 TGGTAGCACTTTTTAGTCCTCAAAGAGC
1 TGGTGGCACCTTTT--TCCTCAAAGAGC
60983 GTGATGCACT
Statistics
Matches: 319, Mismatches: 23, Indels: 36
0.84 0.06 0.10
Matches are distributed among these distances:
328 3 0.01
329 36 0.11
330 64 0.20
331 65 0.20
332 57 0.18
333 77 0.24
334 5 0.02
335 12 0.04
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (331 bp):
TGGTGGCACCTTTTTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTT
CAGTCCTCAAAGAGCAGGACAGCCTTTCAAAGCCCACACAATTGGTGGCATTTTCCAGTCCTCAA
AGAACGGATGCCTTTAAAGCCCACACAGTTGTGGCATTTTCCAGTCTCAAAGAGCAGGATGCTTT
TCTTTTCAAACCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACTGCTTTCTTTT
AAAAGCCCACACAAGTTGGTGGCAACTTTTAGTCCTCAAAAGAGCAGGACGCCTTTCAAAGCCCA
CACAGT
Done.