Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 59162
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Found at i:1249 original size:158 final size:158
Alignment explanation
Indices: 451--1859 Score: 687
Period size: 158 Copynumber: 9.1 Consensus size: 158
441 AAACTTTTAT
* *
451 TCTAAGGAAAATAGTAGAGAAAAAACTTTTCTCACAAAATCAAAGCATTAATATCGTGTATCCCA
1 TCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACAAAATCAAAGCATTAATATTGTGTATCCCA
* * * * *
516 AAAAGGAGAATATGTTTTGTTTGCCTAATCAGTGGAAAGAATTAATATTATAATAAGAA-TCCAT
66 AAAAGGAGAATGTGTTTTGTTTGCCCAATCA-TGGAAAGAATGAAGATTATTATAAGAAGTCCAT
* * * *
580 GTTTGTTTTATCTAACGTACAAACACAAAA
130 GTTTGTTTCAT-TTACATACAAACTCAAAA
* * * ** * * * *
610 TGTAAGGAAAATCGT-G-GCAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACT-TTTTGTAT
1 TCTAAGGAAAATGGTAGAG-AA-AAAA-CTTTTCTCACAAAATCAAAGCATTAA-TATTGTGTAT
** * * * * * * *
672 CCCGATGAA-GATAACGTGTTTATG-GTGCCCAATCATTGAAAGAATGGAGATTATT-T-CGTAG
62 CCC-AAAAAGGAGAATGTGTTT-TGTTTGCCCAATCATGGAAAGAATGAAGATTATTATAAGAAG
* * ** *** *
733 ATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTAT
125 -TCCATGTTTGTTTCATTTACA-TACAAACTCAAAA
* * * *
769 TCTAAGGAAATTGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAATAATATTGTGTATCCCA
1 TCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACAAAATCAAAGCATTAATATTGTGTATCCCA
* * * *
834 AAAAGGAGAATGT-TTTTGTTTGCCTAATCATGGAAAGAATGATGATTATTATAAGAA-CCCTTG
66 AAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAATGAAGATTATTATAAGAAGTCCATG
* * *
897 TTCGTTTCATCTAACATACGAACTCAAAA
131 TTTGTTTCAT-TTACATACAAACTCAAAA
* * * ** * ** * **
926 TATAAGGAAAATCATGGCA-AG-AAAAGCTTTTCTTTCAAAACCAATTCATCAATATTGTGCCTC
1 TCTAAGG-AAA--ATGGTAGAGAAAAAACTTTTCTCACAAAATCAAAGCATTAATATTGTGTATC
* * * * * * ** *
989 CCAATGAA-GATAACGTGTTTATG-GTACCCAATCATTGAAAGAATTG-AGATT-TT-TTCGTAG
63 CCAA-AAAGGAGAATGTGTTT-TGTTTGCCCAATCATGGAAAGAA-TGAAGATTATTATAAGAAG
* * ** *****
1049 ATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTCT
125 -TCCATGTTTGTTTCATTTACA-TACAAACTCAAAA
* *
1085 TCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCA
1 TCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACAAAATCAAAGCATTAATATTGTGTATCCCA
*
1150 AAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAATGAAGATTATTATAAGAAGT-CATT
66 AAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAATGAAGATTATTATAAGAAGTCCATG
*
1214 TTTGTTTCATTTGACATACGAACTCAAAA
131 TTTGTTTCATTT-ACATACAAACTCAAAA
* * ** * ** * * * *
1243 TGTAAGGAAAATCGT-GCCAAGAAGAGCTTTTCTTGCAAAACCAATGC-GTCA-A---TG-A---
1 TCTAAGGAAAATGGTAGAGAA-AA-AACTTTTCTCACAAAATCAAAGCATTAATATTGTGTATCC
* * ** * * * * * * * ** *
1298 -ATATA--A-CCTGT-TTATG-GTGCCGAATCGTTGAAAGAAGGGAGATT-TT-TTCGTAGATCC
64 CAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAATGAAGATTATTATAAGAAG-TCC
* * ** *****
1355 ATGTTTGTCTCATTTAAAGTGTAAACTTTTCT
128 ATGTTTGTTTCATTTACA-TACAAACTCAAAA
* *
1387 TCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCA
1 TCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACAAAATCAAAGCATTAATATTGTGTATCCCA
* *
1452 AAAAGGAGAATGTGTTTTGTTTGCCCAATCGTGGAAAGAATGAAGATTATTATAAGAAGT-CATT
66 AAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAATGAAGATTATTATAAGAAGTCCATG
*
1516 TTTGTTTCATTTGACATACGAACTCAAAA
131 TTTGTTTCATTT-ACATACAAACTCAAAA
* * ** * ** * * * *
1545 TGTAAGGAAAATCGT-GCCAAGAAGAGCTTTTCTTGCAAAACCAATGC-GTCA-A---TG-A---
1 TCTAAGGAAAATGGTAGAGAA-AA-AACTTTTCTCACAAAATCAAAGCATTAATATTGTGTATCC
* * ** * * * * * * * ** *
1600 -ATATA--AGCCTGT-TTATG-GTGCCGAATCGTTGAAAGAAGGGAGATT-TT-TTCGTAGATCC
64 CAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAATGAAGATTATTATAAGAAG-TCC
* * * *** *
1658 ATGTTTGTCTCATTTAAAGTATAAACTTTTAT
128 ATGTTTGTTTCATTTACA-TACAAACTCAAAA
* * * *
1690 TCTAAGTAAAATGGTTGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCA
1 TCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACAAAATCAAAGCATTAATATTGTGTATCCCA
* * * *
1755 AAGAGGAGAATGTGTTTTGATTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAA-TTCATG
66 AAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAATGAAGATTATTATAAGAAGTCCATG
* * *
1819 TTTATTTCATCTAACATACGAACTCAAAA
131 TTTGTTTCAT-TTACATACAAACTCAAAA
*
1848 TGTAAGGAAAAT
1 TCTAAGGAAAAT
1860 CGTGGTAAGA
Statistics
Matches: 877, Mismatches: 291, Indels: 165
0.66 0.22 0.12
Matches are distributed among these distances:
142 4 0.00
143 26 0.03
144 80 0.09
145 68 0.08
146 11 0.01
147 6 0.01
148 2 0.00
149 9 0.01
150 1 0.00
153 5 0.01
154 7 0.01
155 1 0.00
156 15 0.02
157 87 0.10
158 310 0.35
159 168 0.19
160 70 0.08
161 7 0.01
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (158 bp):
TCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACAAAATCAAAGCATTAATATTGTGTATCCCA
AAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAATGAAGATTATTATAAGAAGTCCATG
TTTGTTTCATTTACATACAAACTCAAAA
Found at i:1536 original size:302 final size:301
Alignment explanation
Indices: 1--10234 Score: 13827
Period size: 302 Copynumber: 33.2 Consensus size: 301
*
1 AAATGTAAGG-AAATCAGTGCCAAGAAGAGCTTTTCTTGCAAAAACCAATGCGTCAATGAATATA
1 AAATGTAAGGAAAATC-GTGGCAAGAAGAGCTTTTCTTGC-AAAACCAATGCGTCAATGAATATA
* * *
65 ACCTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCAT
64 ACGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCAT
* ** * * * *
130 TTAAAGTATAAACTTTTATTCTAATTAAAATGGTTGAGAAAAAACTTTTCTAATGAAATCTAAGC
129 TTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGC
*
195 ATTAATATCGTGTATCCCAACAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGA
194 ATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGA
*
260 TTATTATAAGAATTCATGTTTGTTTCATCTAACATACGAACTCA
259 TTATTATAAGAA-TCATTTTTGTTTCATCTAACATACGAACTCA
*
304 AAATGTAAGGAAAATCGTGGTAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
* ** **
369 CTGTTTATGGTAACGAATCATTGACTGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
66 GTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
** * *
434 AAAGAATAAACTTTTATTCTAAGGAAAATAGTAGAGAAAAAACTTTTCTCACAAAATCAAAGCAT
131 AAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
* * *
499 TAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCAGTGGAAAGAATTAATAT
196 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCA-TGGAAAGAATGAAGAT
* * * * * *
564 TATAATAAGAATCCATGTTTGTTTTATCTAACGTACAAACACA
260 TATTATAAGAAT-CATTTTTGTTTCATCTAACATACGAACTCA
* * *
607 AAATGTAAGGAAAATCGTGGCAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACTTTTTGTAT
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA-----TG-A-
* *
672 CCCGATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCC
59 ----AT----ATAACGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCC
* *
737 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTC
116 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
* *
802 ACGAAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGAATGT-TTTTGTTTGCCTAATCATG
181 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG
* * * *
866 GAAAGAATGATGATTATTATAAGAACCCTTGTTCGTTTCATCTAACATACGAACTCA
246 GAAAGAATGAAGATTATTATAAGAATCATT-TTTGTTTCATCTAACATACGAACTCA
* * * * *
923 AAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCATCAATATTGTGCCT
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGC--AA--AA--C--C-A-A---TGCGT
* * * *
988 CCCAATGAAGATAACGTGTTTATGGTACCCAATCATTGAAAGAATTGAGATTTTTTCGTAGATCC
53 --CAATGAATATAACGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCC
*
1053 ATGTTTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
116 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
*
1118 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATG
181 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG
* *
1183 GAAAGAATGAAGATTATTATAAGAAGTCATTTTTGTTTCATTTGACATACGAACTCA
246 GAAAGAATGAAGATTATTATAAGAA-TCATTTTTGTTTCATCTAACATACGAACTCA
*
1240 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
* * *
1305 CTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
66 GTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
*
1370 AAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
131 AAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
* *
1435 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCGTGGAAAGAATGAAGATT
196 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATT
* *
1500 ATTATAAGAAGTCATTTTTGTTTCATTTGACATACGAACTCA
261 ATTATAAGAA-TCATTTTTGTTTCATCTAACATACGAACTCA
*
1542 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAG
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAA-
* * *
1607 CCTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATT
65 CGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATT
* * *
1672 TAAAGTATAAACTTTTATTCTAAGTAAAATGGTTGAGAAAAAACTTTTCTCACGAAATCAAAGCA
130 TAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCA
* *
1737 TTAATATCGTGTATCCCAAAGAGGAGAATGTGTTTTGATTGCCTAATCATGGAAAGAATGAAGAT
195 TTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGAT
* *
1802 TATTATAAGAATTCATGTTTATTTCATCTAACATACGAACTCA
260 TATTATAAGAA-TCATTTTTGTTTCATCTAACATACGAACTCA
*
1845 AAATGTAAGGAAAATCGTGGTAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
* *
1910 TTGTTTATGGTGCCGAATCATT-AACTGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATT
66 GTGTTTATGGTGCCGAATCATTGAA-AGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATT
* * *
1974 TAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAACCTTTCTCACGAAATCAAAGCA
130 TAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCA
* * *
2039 TTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCCTGGAAAGAATGAATAT
195 TTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGAT
* * * * * *
2104 TATAATAAGAATCCATGTTTGTTTTATCTAA-AGCACAAACACA
260 TATTATAAGAAT-CATTTTTGTTTCATCTAACA-TACGAACTCA
* * * *
2147 AAATGTAAGGAAAATCTTGGCAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACTTTCTGTAT
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA-----TG-A-
* *
2212 CCCGATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCC
59 ----AT----ATAACGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCC
* *
2277 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTC
116 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
* * *
2342 ACGAAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGAATGTTTTTTGTTTGCCTAATCATG
181 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG
* *
2407 GAAAGAATGAATGATTATTATAAGAACCCTTGTTTGTTTCATCTAACATACGAACTCA
246 GAAAGAATGAA-GATTATTATAAGAATCATT-TTTGTTTCATCTAACATACGAACTCA
* * * * * *
2465 AATTATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCATCAATATTGTGCCT
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGC--AA--AA--C--C-A-A---TGCGT
* * * * *
2530 CCCAATGAAGATAACGTGTTTATGGTACCCAATCATTGAAAGAATTGAGATTTTTTCATAGATCC
53 --CAATGAATATAACGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCC
*
2595 ATGTTTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
116 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
*
2660 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATG
181 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG
* * *
2725 GAAAGAATGAAGATTATTATAAGAAGTCATTTTTGCTTCATTTGACATACGAACTCA
246 GAAAGAATGAAGATTATTATAAGAA-TCATTTTTGTTTCATCTAACATACGAACTCA
*
2782 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
* * *
2847 CTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
66 GTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
* * *
2912 AGAGTATAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
131 AAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
*
2977 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAATGAAGATT
196 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATT
* * *
3042 ATTATAAGAAGTCATTTTTGCTTCATTTGACATACGAACTCA
261 ATTATAAGAA-TCATTTTTGTTTCATCTAACATACGAACTCA
* * * *
3084 AAATGTAAGGAAAATCGTGGCAAGAAAAGCTCTTCTTGCAAAACCAGTGCATCAACTTTCTGTAT
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA-----TG-A-
* *
3149 CCCGATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCC
59 ----AT----ATAACGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCC
* *
3214 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTC
116 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
* *
3279 ACGAAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGAATGT-TTTTGTTTGCCTAATCATG
181 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG
* * * *
3343 GAAAGAATGATGATTATTATAAGAACCCTTGTTCGTTTCATCTAACATACGAACTCA
246 GAAAGAATGAAGATTATTATAAGAATCATT-TTTGTTTCATCTAACATACGAACTCA
* * * * *
3400 AAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCATCAATATTGTGCCT
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGC--AA--AA--C--C-A-A---TGCGT
* * * *
3465 CCCAATGAAGATAACGTGTTTATGGTACCCAATCATTGAAAGAATTGAGATTTTTTCGTAGATCC
53 --CAATGAATATAACGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCC
*
3530 ATGTTTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
116 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
*
3595 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATG
181 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG
* *
3660 GAAAGAATGAAGATTATTATAAGAAGTCATTTTTGTTTCATTTGACATACGAACTCA
246 GAAAGAATGAAGATTATTATAAGAA-TCATTTTTGTTTCATCTAACATACGAACTCA
*
3717 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
* * *
3782 CTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
66 GTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
* * * *
3847 AGAGTATAAACTTTTCTTCTAAGGAAAATGGTAGACAAAAAACTTTTCTCACGAAATCAAAGCAT
131 AAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
*
3912 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAATGAAGATT
196 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATT
* * *
3977 ATTATAAGAAGTCATTTTTGCTTCATTTGACATACGAACTCA
261 ATTATAAGAA-TCATTTTTGTTTCATCTAACATACGAACTCA
* *
4019 AAATGTAAGGAAAATCATGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
* * * *
4084 CTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAAATCCATGTTTGTCTCATTT
66 GTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
* * * *
4149 AGAGTATAAACTTTTATTCTAAGTAAAATGGTTGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
131 AAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
* *
4214 TAATATCGTGTATCCCAAAGAGGAGAATGTGTTTTGATTGCCTAATCATGGAAAGAATGAAGATT
196 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATT
*
4279 ATTATAAGAATTCATGTTTGTTTCATCTAACATACGAACTCA
261 ATTATAAGAA-TCATTTTTGTTTCATCTAACATACGAACTCA
* *
4321 AAATGTAAGGAAAATCATGGTAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
*
4386 TTGTTTATGGTGCCGAATCATT-AACTA-AATGGAGATTTTTTCGTAGATCCATGTTTGTCTCAT
66 GTGTTTATGGTGCCGAATCATTGAA--AGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCAT
* * * *
4449 TTAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAACCTTTCTCACGAAAGCAAAGC
129 TTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGC
* *
4514 ATTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCATGGAAAGAATGAATA
194 ATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGA
* * * * * *
4579 TTATAATAAGAATCCATGTTTGTTTTATCTAA-AGCACAAACACA
259 TTATTATAAGAAT-CATTTTTGTTTCATCTAACA-TACGAACTCA
* * * *
4623 AAATGTAAGGAAAATCGTGGCAAGAAAAGCTCTTCTTGCAAAACCAGTGCATCAACTTTCTGTAT
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA-----TG-A-
* *
4688 CCCGATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCC
59 ----AT----ATAACGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCC
* *
4753 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTC
116 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
* *
4818 ACGAAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGAATGT-TTTTGTTTGCCTAATCATG
181 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG
* * * *
4882 GAAAGAATGATGATTATTATAAGAACCCTTGTTCGTTTCATCTAACATACGAACTCA
246 GAAAGAATGAAGATTATTATAAGAATCATT-TTTGTTTCATCTAACATACGAACTCA
* * * * *
4939 AAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCATCAATATTGTGCCT
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGC--AA--AA--C--C-A-A---TGCGT
* * * * *
5004 CCCAATGAAGATAACGTGTTTATGGTACCCAATCATTGACAGAATTGAGATTTTTTCGTAGATCC
53 --CAATGAATATAACGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCC
*
5069 ATGTTTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
116 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
*
5134 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATG
181 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG
* *
5199 GAAAGAATGAAGATTATTATAAGAAGTCATTTTTGTTTCATTTGACATACGAACTCA
246 GAAAGAATGAAGATTATTATAAGAA-TCATTTTTGTTTCATCTAACATACGAACTCA
*
5256 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
* * *
5321 CTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
66 GTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
*
5386 AAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
131 AAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
* *
5451 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCGTGGAAAGAATGAAGATT
196 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATT
* *
5516 ATTATAAGAAGTCATTTTTGTTTCATTTGACATACGAACTCA
261 ATTATAAGAA-TCATTTTTGTTTCATCTAACATACGAACTCA
*
5558 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
* * *
5623 CTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
66 GTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
* * * *
5688 AAAGTATAAACTTTTATTCTAAGTAAAATGGTTGAG-AAAAACTTTTCTCACGAAATCAAAGTAT
131 AAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
* * *
5752 TAATATCGTGTATCCCAAAGAGGAGAATGTGTTTTGATTACCTAATCATGGAAAGAATGAAGATT
196 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATT
* *
5817 ATTATAAGAATTCATGTTTATTTCATCTAACATACGAACTCA
261 ATTATAAGAA-TCATTTTTGTTTCATCTAACATACGAACTCA
*
5859 AAATGTAAGGAAAATCGTGGTAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
* *
5924 TTGTTTATGGTGCCGAATCATT-AACTGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATT
66 GTGTTTATGGTGCCGAATCATTGAA-AGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATT
* * *
5988 TAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAACCTTTCTCACGAAATCAAAGCA
130 TAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCA
* * *
6053 TTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCCTGGAAAGAATGAATAT
195 TTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGAT
* * * * * *
6118 TATAATAAGAATCCATGTTTGTTTTATCTAA-AGCACAAACACA
260 TATTATAAGAAT-CATTTTTGTTTCATCTAACA-TACGAACTCA
* * *
6161 AAATGTAAGGAAAATCTTGGCAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACTTTCTGTAT
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATG----------C-G--T
* * *
6226 CCCAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCC
53 --CAATGAATATAACGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCC
* *
6291 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTC
116 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
* *
6356 ACGAAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGAATGT-TTTTGTTTGCCTAATCATG
181 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG
* * * *
6420 GAAAGAATGATGATTATTATAAGAACCCTTGTTCGTTTCATCTAACATACGAACTCA
246 GAAAGAATGAAGATTATTATAAGAATCATT-TTTGTTTCATCTAACATACGAACTCA
* * * * *
6477 AAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCATCAATATTGTGCCT
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGC--AA--AA--C--C-A-A---TGCGT
* * * *
6542 CCCAATGAAGATAACGTGTTTATGGTACCCAATCATTGAAAGAATTGAGATTTTTTCGTAGATCC
53 --CAATGAATATAACGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCC
* *
6607 ATGTTTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAACCTTTTCTC
116 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
*
6672 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATG
181 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG
* *
6737 GAAAGAATGAAGATTATTATAAGAAGTCATTTTTGTTTCATTTGACATACGAACTCA
246 GAAAGAATGAAGATTATTATAAGAA-TCATTTTTGTTTCATCTAACATACGAACTCA
*
6794 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
* * *
6859 CTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
66 GTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
*
6924 AAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
131 AAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
* *
6989 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCGTGGAAAGAATGAAGATT
196 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATT
* *
7054 ATTATAAGAAGTCATTTTTGTTTCATTTGACATACGAACTCA
261 ATTATAAGAA-TCATTTTTGTTTCATCTAACATACGAACTCA
*
7096 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
* * *
7161 CTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
66 GTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
* * *
7226 AAAGTATAAACTTTTATTCTAAGTAAAATGGTTGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
131 AAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
* *
7291 TAATATCGTGTATCCCAAAGAGGAGAATGTGTTTTGATTGCCTAATCATGGAAAGAATGAAGATT
196 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATT
* *
7356 ATTATAAGAATTCATGTTTATTTCATCTAACATACGAACTCA
261 ATTATAAGAA-TCATTTTTGTTTCATCTAACATACGAACTCA
*
7398 AAATGTAAGGAAAATCGTGGTAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
* *
7463 TTGTTTATGGTGCCGAATCATT-AACTGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATT
66 GTGTTTATGGTGCCGAATCATTGAA-AGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATT
* * *
7527 TAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAACCTTTCTCACGAAATCAAAGCA
130 TAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCA
* * * *
7592 TTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCCTAGAAAGAATGAATAT
195 TTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGAT
* * * * * *
7657 TATAATAAGAATCCATGTTTGTTTTATCTAA-AGCACAAACACA
260 TATTATAAGAAT-CATTTTTGTTTCATCTAACA-TACGAACTCA
* * * *
7700 AAATGTAAGGAAAATCTTGGCAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACTTTCTGTAT
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA-----TG-A-
* *
7765 CCCGATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCC
59 ----AT----ATAACGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCC
* * *
7830 TTGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTC
116 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
* * * * *
7895 ACGAAATCAAAGCAATAATATTGTATATCCAAAAAAGGAGAATGTTTTTTGTTTGCCTAATCATG
181 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG
* *
7960 GAAAGAATGAAGATTATTATAAGAACCCTTGTTTGTTTCATCTAACATACGAACTCA
246 GAAAGAATGAAGATTATTATAAGAATCATT-TTTGTTTCATCTAACATACGAACTCA
* * * * * *
8017 AATTATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTTCAAAAGCAATTCATCAATATTGTGCCT
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGC--AA--AA--C--C-A-A---TGCGT
* * * * *
8082 CCCAATGAAGATAACGTGTTTATGGTACCCAATCATTGAAAGAATTGAGATTTTTTCATAGATCC
53 --CAATGAATATAACGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCC
* *
8147 ATGTTTGTCTCATTTAAAGTGTAAACTTTTCTTCTGAGGAAAATGGTAGAGAAAAAACTTTTCTC
116 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
*
8212 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATG
181 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG
* * *
8277 GAAAGAATGAAGATTATTATAAGAAGTCATTTTTGCTTCATTTGACATACGAACTCA
246 GAAAGAATGAAGATTATTATAAGAA-TCATTTTTGTTTCATCTAACATACGAACTCA
* *
8334 AAATGTAAGGAAAATCGT-GC--CAAGAGCTTCTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
* * *
8396 CTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
66 GTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
* * *
8461 AGAGTATAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
131 AAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
*
8526 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAATGAAGATT
196 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATT
* * *
8591 ATTATAAGAAGTCATTTTTGCTTCATTTGACATACGAACTCA
261 ATTATAAGAA-TCATTTTTGTTTCATCTAACATACGAACTCA
* * * *
8633 AAATGTAAGGAAAATCGTGGCAAGAAAAGCTCTTCTTGCAAAACCAGTGCATCAACTTTCTGTAT
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA-----TG-A-
* *
8698 CCCGATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCC
59 ----AT----ATAACGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCC
* *
8763 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTC
116 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
* *
8828 ACGAAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGAATGT-TTTTGTTTGCCTAATCATG
181 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG
* * * *
8892 GAAAGAATGATGATTATTATAAGAACCCTTGTTCGTTTCATCTAACATACGAACTCA
246 GAAAGAATGAAGATTATTATAAGAATCATT-TTTGTTTCATCTAACATACGAACTCA
* * * * *
8949 AAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCATCAATATTGTGCCT
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGC--AA--AA--C--C-A-A---TGCGT
* * * *
9014 CCCAATGAAGATAACGTGTTTATGGTACCCAATCATTGAAAGAATTGAGATTTTTTCGTAGATCC
53 --CAATGAATATAACGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCC
*
9079 ATGTTTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
116 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
* *
9144 ACGAAATCAAAGCATTAATATCGTTTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATG
181 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG
* *
9209 GAAAGAATGAAGATTATTATAAGAAGTCATGTTTGTTTCATCAAACATACGAACTCA
246 GAAAGAATGAAGATTATTATAAGAA-TCATTTTTGTTTCATCTAACATACGAACTCA
*
9266 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAA-
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
* *
9330 GCTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATT
66 G-TGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATT
* * *
9395 TAAAGTATAAACTTTTATTCTAAGTAAAATGGTTGAGAAAAAACTTTTCTCACGAAATCAAAGCA
130 TAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCA
* *
9460 TTAATATCGTGTATCCCAAAGAGGAGAATGTGTTTTGATTGCCTAATCATGGAAAGAATGAAGAT
195 TTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGAT
* *
9525 TATTATAAGAATTCATGTTTATTTCATCTAACATACGAACTCA
260 TATTATAAGAA-TCATTTTTGTTTCATCTAACATACGAACTCA
*
9568 AAATGTAAGGAAAATCGTGGTAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
* *
9633 TTGTTTATGGTGCCGAATCATT-AACTGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATT
66 GTGTTTATGGTGCCGAATCATTGAA-AGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATT
* * *
9697 TAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGTGAAAAAACTTTTCTCACGAAATCAAAGCA
130 TAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCA
* *
9762 TTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCATGGAAAGAATGAATAT
195 TTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGAT
* * * * * *
9827 TATAATAAGAATCCATGTTTGTTTTATCTAA-AGCACAAACACA
260 TATTATAAGAAT-CATTTTTGTTTCATCTAACA-TACGAACTCA
* * *
9870 AAATGTAAGGAAAATCGTGGCAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACTTTCTGTAT
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA-----TG-A-
* * *
9935 CCCGATGAAGATAATGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCC
59 ----AT----ATAACGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCC
*
10000 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGG-AAATAGGCAGAGAAAAAACTTTTCT
116 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAAT-GGTAGAGAAAAAACTTTTCT
* * *
10064 CACGAAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGAATGTTTTTTGTTTGCCTAATCAT
180 CACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCAT
* * *
10129 GGAAAGAATGAAGATTATTATAAGAACCCTTGTTTGTTTCATCTAATATACGAACTCA
245 GGAAAGAATGAAGATTATTATAAGAATCATT-TTTGTTTCATCTAACATACGAACTCA
* * * * *
10187 AATTATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAAT
1 AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAAT
10235 TCATCAATAT
Statistics
Matches: 8949, Mismatches: 700, Indels: 550
0.88 0.07 0.05
Matches are distributed among these distances:
299 257 0.03
300 4 0.00
301 301 0.03
302 3894 0.44
303 420 0.05
304 30 0.00
305 1 0.00
306 1 0.00
307 18 0.00
308 15 0.00
309 7 0.00
310 2 0.00
311 6 0.00
312 3 0.00
313 25 0.00
314 14 0.00
315 25 0.00
316 1270 0.14
317 2101 0.23
318 442 0.05
319 4 0.00
320 16 0.00
321 3 0.00
322 8 0.00
323 1 0.00
324 6 0.00
325 10 0.00
326 13 0.00
327 5 0.00
328 3 0.00
329 18 0.00
330 4 0.00
331 16 0.00
332 3 0.00
333 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (301 bp):
AAATGTAAGGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
GTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
AAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATT
ATTATAAGAATCATTTTTGTTTCATCTAACATACGAACTCA
Found at i:3783 original size:935 final size:921
Alignment explanation
Indices: 1--13056 Score: 15040
Period size: 935 Copynumber: 14.0 Consensus size: 921
1 AAATGTAAGG-AAATCAGTGCCAAGAAGAGCTTTTCTTGCAAAAACCAATGCGTCAATGAATATA
1 AAATGTAAGGAAAATC-GTGCCAAGAAGAGCTTTTCTTGC-AAAACCAATGCGTCAATGAATATA
*
65 ACCTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCAT
64 ACCTGTTTATGGTGCCGAATCATTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCAT
** * * * *
130 TTAAAGTATAAACTTTTATTCTAATTAAAATGGTTGAGAAAAAACTTTTCTAATGAAATCTAAGC
129 TTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGC
*
195 ATTAATATCGTGTATCCCAACAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGA
194 ATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGA
* *
260 TTATTATAAGAATTCATGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCGTGGT
259 TTATTATAAGAAGTCATGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCGTGGC
* **
325 AAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAACCTGTTTATGGTAACGAATCAT
324 AAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAACGTGTTTATGGTGCCGAATCAT
** **
390 TGACTGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGAATAAACTTTTATTCTA
389 TGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTA
* *
455 AGGAAAATAGTAGAGAAAAAACTTTTCTCACAAAATCAAAGCATTAATATCGTGTATCCCAAAAA
454 AGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAA
* * * *
520 GGAGAATATGTTTTGTTTGCCTAATCAGTGGAAAGAATTAAT-ATTATAATAAGAATCCATGTTT
519 GGAGAATGTGTTTTGTTTGCCTAATCA-TGGAAAGAA-TGATGATTATTATAAGAATCCTTGTTT
* * * * * *
584 GTTTTATCTAACGTACAAACACAAAATGTAAGGAAAATCGTGGCAAGAAAAGCTCTTCTTGCAAA
582 GTTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAA
* * *
649 ACCAATGCATCAACT-TTTTGTATCCCGATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAA
647 ACCAATGCATCAA-TATTGTGCATCCCAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAA
*
713 GAATGGAGATTATTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAA
711 GAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAA
* * * *
778 ATTGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGA
776 AATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGA
* * * *
843 ATGT-TTTTGTTTGCCTAATCATGGAAAGAATGATGATTATTATAAGAA-CCCTTGTTCGTTTCA
841 ATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAAGTCATT-TTTGTTTCA
906 TCTAACATACGAACTCA
905 TCTAACATACGAACTCA
* * * * * *
923 AAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCATCAATATTGTGCCT
1 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGC--AA--AA--C--C-A-A---TGCGT
* * * * **
988 CCCAATGAAGATAACGTGTTTATGGTACCCAATCATTGAAAGAATTGAGATTTTTTCGTAGATCC
53 --CAATGAATATAACCTGTTTATGGTGCCGAATCATTGAAAGAAGGGAGATTTTTTCGTAGATCC
* *
1053 ATGTTTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
116 ATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
*
1118 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATG
181 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG
* * *
1183 GAAAGAATGAAGATTATTATAAGAAGTCATTTTTGTTTCATTTGACATACGAACTCAAAATGTAA
246 GAAAGAATGAAGATTATTATAAGAAGTCATGTTTGTTTCATCTAACATACGAACTCAAAATGTAA
* *
1248 GGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAACCTGTTTAT
311 GGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAACGTGTTTAT
* *
1313 GGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTA
376 GGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTA
*
1378 AACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCG
441 AACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCG
* * *
1443 TGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCGTGGAAAGAATGAAGATTATTATAAG
506 TGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGATGATTATTATAAG
* * * * * *
1508 AAGTCATT-TTTGTTTCATTTGACATACGAACTCAAAATGTAAGGAAAATCGTGCCAAGAAGAGC
571 AA-TCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCATGGCAAGAAAAGC
* * * *
1572 TTTTCTTGCAAAACCAATGCGTC-A-A---TGAAT----AT-AAG----CCTGTTTATGGTGCCG
635 TTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGTGCCC
* * *
1623 AATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTT
700 AATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTT
* *
1688 ATTCTAAGTAAAATGGTTGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCC
765 ATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCC
* * *
1753 CAAAGAGGAGAATGTGTTTTGATTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATTCAT
830 CAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAAGTCAT
* *
1818 GTTTATTTCATCTAACATACGAACTCA
895 TTTTGTTTCATCTAACATACGAACTCA
**
1845 AAATGTAAGGAAAATCGTGGTAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
* * *
1910 TTGTTTATGGTGCCGAATCATT-AACTGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATT
66 CTGTTTATGGTGCCGAATCATTGAA-AGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATT
* *
1974 TAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAACCTTTCTCACGAAATCAAAGCA
130 TAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCA
* * *
2039 TTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCCTGGAAAGAATGAATAT
195 TTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGAT
* * * * * *
2104 TATAATAAGAA-TCCATGTTTGTTTTATCTAA-AGCACAAACACAAAATGTAAGGAAAATCTTGG
260 TATTATAAGAAGT-CATGTTTGTTTCATCTAACA-TACGAACTCAAAATGTAAGGAAAATCGTGG
* * *
2167 CAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACTTTCTGTATCCCGATGAAGATAACGTGTT
323 CAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA-----TG-A-----AT----ATAACGTGTT
* *
2232 TATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCCATGTTTGTCTCATTTAAAGT
373 TATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGT
* * *
2297 GTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAATAATA
438 GTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATA
* *
2362 TTGTGTATCCCAAAAAGGAGAATGTTTTTTGTTTGCCTAATCATGGAAAGAATGAATGATTATTA
503 TCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG-ATGATTATTA
* * *
2427 TAAGAACCCTTGTTTGTTTCATCTAACATACGAACTCAAATTATAAGGAAAATCATGGCAAGAAA
567 TAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCATGGCAAGAAA
* * * *
2492 AGCTTTTCTTTCAAAACCAATTCATCAATATTGTGCCTCCCAATGAAGATAACGTGTTTATGGTA
632 AGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGTG
* *
2557 CCCAATCATTGAAAGAATTGAGATTTTTTCATAGATCCATGTTTGTCTCATTTAAAGTGTAAACT
697 CCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACT
*
2622 TTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTA
762 TTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTA
*
2687 TCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAATGAAGATTATTATAAGAAGT
827 TCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAAGT
* * *
2752 CATTTTTGCTTCATTTGACATACGAACTCA
892 CATTTTTGTTTCATCTAACATACGAACTCA
2782 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
*
2847 CTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
66 CTGTTTATGGTGCCGAATCATTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
* *
2912 AGAGTATAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
131 AAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
*
2977 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAATGAAGATT
196 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATT
* * * *
3042 ATTATAAGAAGTCATTTTTGCTTCATTTGACATACGAACTCAAAATGTAAGGAAAATCGTGGCAA
261 ATTATAAGAAGTCATGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCGTGGCAA
* * * *
3107 GAAAAGCTCTTCTTGCAAAACCAGTGCATCAACTTTCTGTATCCCGATGAAGATAACGTGTTTAT
326 GAAGAGCTTTTCTTGCAAAACCAATGCGTCAA-----TG-A-----AT----ATAACGTGTTTAT
* *
3172 GGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTA
376 GGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTA
* * * *
3237 AACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAATAATATTG
441 AACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCG
3302 TGTATCCCAAAAAGGAGAATGT-TTTTGTTTGCCTAATCATGGAAAGAATGATGATTATTATAAG
506 TGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGATGATTATTATAAG
* * *
3366 AACCCTTGTTCGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCT
571 AATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCATGGCAAGAAAAGCT
* * * *
3431 TTTCTTTCAAAACCAATTCATCAATATTGTGCCTCCCAATGAAGATAACGTGTTTATGGTACCCA
636 TTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGTGCCCA
* *
3496 ATCATTGAAAGAATTGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTC
701 ATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTA
3561 TTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCC
766 TTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCC
*
3626 AAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAATGAAGATTATTATAAGAAGTCATT
831 AAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAAGTCATT
* *
3691 TTTGTTTCATTTGACATACGAACTCA
896 TTTGTTTCATCTAACATACGAACTCA
3717 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
*
3782 CTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
66 CTGTTTATGGTGCCGAATCATTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
* * *
3847 AGAGTATAAACTTTTCTTCTAAGGAAAATGGTAGACAAAAAACTTTTCTCACGAAATCAAAGCAT
131 AAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
*
3912 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAATGAAGATT
196 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATT
* * * * * *
3977 ATTATAAGAAGTCATTTTTGCTTCATTTGACATACGAACTCAAAATGTAAGGAAAATCATGCCAA
261 ATTATAAGAAGTCATGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCGTGGCAA
* *
4042 GAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAACCTGTTTATGGTGCCGAATCGTTG
326 GAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAACGTGTTTATGGTGCCGAATCATTG
* * * *
4107 AAAGAAGGGAGATTTTTTCGTAAATCCATGTTTGTCTCATTTAGAGTATAAACTTTTATTCTAAG
391 AAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAG
* * *
4172 TAAAATGGTTGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAGAGG
456 GAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGG
* * * *
4237 AGAATGTGTTTTGATTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATTCATGTTTGTTT
521 AGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGATGATTATTATAAGAATCCTTGTTTGTTT
* *
4302 CATCTAACATACGAACTCAAAATGTAAGGAAAATCATGGTAAGAAGAGCTTTTCTTGCAAAACCA
586 CATCTAACATACGAACTCAAAATGTAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAACCA
* * *
4367 ATG---C--------G--T--CAATGAATATAACTTGTTTATGGTGCCGAATCATT-AACTA-AA
651 ATGCATCAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAA--AGAA
* *
4415 TGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTGTATTCTAAGGAAAAT
714 TGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAAT
* * *
4480 GGTAGAGAAAAAACCTTTCTCACGAAAGCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATA
779 GGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATG
* * * *
4545 TGTTTTGTTTGCCTAATCATGGAAAGAATGAATATTATAATAAGAA-TCCATGTTTGTTTTATCT
844 TGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAAGT-CATTTTTGTTTCATCT
* * *
4609 AA-AGCACAAACACA
908 AACA-TACGAACTCA
* * * * *
4623 AAATGTAAGGAAAATCGTGGCAAGAAAAGCTCTTCTTGCAAAACCAGTGCATCAACTTTCTGTAT
1 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA-----TG-A-
* * * *
4688 CCCGATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCC
59 ----AT----ATAACCTGTTTATGGTGCCGAATCATTGAAAGAAGGGAGATTTTTTCGTAGATCC
* * *
4753 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTC
116 ATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
* *
4818 ACGAAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGAATGT-TTTTGTTTGCCTAATCATG
181 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG
* ** * * *
4882 GAAAGAATGATGATTATTATAAGAACCCTTGTTCGTTTCATCTAACATACGAACTCAAAATATAA
246 GAAAGAATGAAGATTATTATAAGAAGTCATGTTTGTTTCATCTAACATACGAACTCAAAATGTAA
* * * *
4947 GGAAAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCATCAATATTGTGCCTCCCAATGA
311 GGAAAATCGTGGCAAGAAGAGCTTTTCTTGC--AA--AA--C--C-A-A---TGCGT--CAATGA
* * * * *
5012 AGATAACGTGTTTATGGTACCCAATCATTGACAGAATTGAGATTTTTTCGTAGATCCATGTTTGT
361 ATATAACGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGT
*
5077 CTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATC
426 CTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATC
*
5142 AAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAAT
491 AAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAAT
* * * *
5207 GAAGATTATTATAAGAAGTCATT-TTTGTTTCATTTGACATACGAACTCAAAATGTAAGGAAAAT
556 GATGATTATTATAAGAA-TCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAAAAT
* * * *
5271 CGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATG---C--------G--T--CAATGAATATAAC
620 CATGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAAGATAAC
* * * *
5321 CTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
685 GTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
*
5386 AAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
750 AAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
* *
5451 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCGTGGAAAGAATGAAGATT
815 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATT
* *
5516 ATTATAAGAAGTCATTTTTGTTTCATTTGACATACGAACTCA
880 ATTATAAGAAGTCATTTTTGTTTCATCTAACATACGAACTCA
5558 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
*
5623 CTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
66 CTGTTTATGGTGCCGAATCATTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
* * *
5688 AAAGTATAAACTTTTATTCTAAGTAAAATGGTTGAG-AAAAACTTTTCTCACGAAATCAAAGTAT
131 AAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
* * *
5752 TAATATCGTGTATCCCAAAGAGGAGAATGTGTTTTGATTACCTAATCATGGAAAGAATGAAGATT
196 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATT
* * *
5817 ATTATAAGAATTCATGTTTATTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCGTGGTAA
261 ATTATAAGAAGTCATGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCGTGGCAA
*
5882 GAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAACTTGTTTATGGTGCCGAATCATT-
326 GAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAACGTGTTTATGGTGCCGAATCATTG
* * *
5946 AACTGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTGTATTCTAA
391 AA-AGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAA
*
6011 GGAAAATGGTAGAGAAAAAACCTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAG
455 GGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAG
* * * *
6076 GAGAATATGTTTTGTTTGCCTAATCCTGGAAAGAATGAAT-ATTATAATAAGAATCCATGTTTGT
520 GAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG-ATGATTATTATAAGAATCCTTGTTTGT
* * * * * *
6140 TTTATCTAA-AGCACAAACACAAAATGTAAGGAAAATCTTGGCAAGAAAAGCTCTTCTTGCAAAA
584 TTCATCTAACA-TACGAACTCAAAATGTAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* *
6204 CCAATGCATCAACT-TTCTGTATCCCAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAG
648 CCAATGCATCAA-TATTGTGCATCCCAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAG
*
6268 AATGGAGATTATTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAA
712 AATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAA
* * * *
6333 TTGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGAA
777 ATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAA
* * * *
6398 TGT-TTTTGTTTGCCTAATCATGGAAAGAATGATGATTATTATAAGAA-CCCTTGTTCGTTTCAT
842 TGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAAGTCATT-TTTGTTTCAT
6461 CTAACATACGAACTCA
906 CTAACATACGAACTCA
* * * * * *
6477 AAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCATCAATATTGTGCCT
1 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGC--AA--AA--C--C-A-A---TGCGT
* * * * **
6542 CCCAATGAAGATAACGTGTTTATGGTACCCAATCATTGAAAGAATTGAGATTTTTTCGTAGATCC
53 --CAATGAATATAACCTGTTTATGGTGCCGAATCATTGAAAGAAGGGAGATTTTTTCGTAGATCC
* * *
6607 ATGTTTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAACCTTTTCTC
116 ATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
*
6672 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATG
181 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG
* * *
6737 GAAAGAATGAAGATTATTATAAGAAGTCATTTTTGTTTCATTTGACATACGAACTCAAAATGTAA
246 GAAAGAATGAAGATTATTATAAGAAGTCATGTTTGTTTCATCTAACATACGAACTCAAAATGTAA
* *
6802 GGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAACCTGTTTAT
311 GGAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAACGTGTTTAT
* *
6867 GGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTA
376 GGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTA
*
6932 AACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCG
441 AACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCG
* * *
6997 TGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCGTGGAAAGAATGAAGATTATTATAAG
506 TGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGATGATTATTATAAG
* * * * * *
7062 AAGTCATT-TTTGTTTCATTTGACATACGAACTCAAAATGTAAGGAAAATCGTGCCAAGAAGAGC
571 AA-TCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCATGGCAAGAAAAGC
* * *
7126 TTTTCTTGCAAAACCAATG---C--------G--T--CAATGAATATAACCTGTTTATGGTGCCG
635 TTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGTGCCC
* * *
7176 AATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTT
700 AATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTT
* *
7241 ATTCTAAGTAAAATGGTTGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCC
765 ATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCC
* * *
7306 CAAAGAGGAGAATGTGTTTTGATTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATTCAT
830 CAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAAGTCAT
* *
7371 GTTTATTTCATCTAACATACGAACTCA
895 TTTTGTTTCATCTAACATACGAACTCA
**
7398 AAATGTAAGGAAAATCGTGGTAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
* * *
7463 TTGTTTATGGTGCCGAATCATT-AACTGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATT
66 CTGTTTATGGTGCCGAATCATTGAA-AGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATT
* *
7527 TAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAACCTTTCTCACGAAATCAAAGCA
130 TAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCA
* * * *
7592 TTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCCTAGAAAGAATGAATAT
195 TTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGAT
* * * * * *
7657 TATAATAAGAA-TCCATGTTTGTTTTATCTAA-AGCACAAACACAAAATGTAAGGAAAATCTTGG
260 TATTATAAGAAGT-CATGTTTGTTTCATCTAACA-TACGAACTCAAAATGTAAGGAAAATCGTGG
* * *
7720 CAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACTTTCTGTATCCCGATGAAGATAACGTGTT
323 CAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA-----TG-A-----AT----ATAACGTGTT
* * *
7785 TATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCCTTGTTTGTCTCATTTAAAGT
373 TATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGT
* * *
7850 GTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAATAATA
438 GTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATA
* * * * *
7915 TTGTATATCCAAAAAAGGAGAATGTTTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTAT
503 TCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGATGATTATTAT
* * *
7980 AAGAACCCTTGTTTGTTTCATCTAACATACGAACTCAAATTATAAGGAAAATCATGGCAAGAAAA
568 AAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCATGGCAAGAAAA
* * * * *
8045 GCTTTTCTTTCAAAAGCAATTCATCAATATTGTGCCTCCCAATGAAGATAACGTGTTTATGGTAC
633 GCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGTGC
* *
8110 CCAATCATTGAAAGAATTGAGATTTTTTCATAGATCCATGTTTGTCTCATTTAAAGTGTAAACTT
698 CCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTT
* *
8175 TTCTTCTGAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTAT
763 TTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTAT
*
8240 CCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAATGAAGATTATTATAAGAAGTC
828 CCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAAGTC
* * *
8305 ATTTTTGCTTCATTTGACATACGAACTCA
893 ATTTTTGTTTCATCTAACATACGAACTCA
*
8334 AAATGTAAGGAAAATCGTGCC---AAGAGCTTCTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
*
8396 CTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
66 CTGTTTATGGTGCCGAATCATTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
* *
8461 AGAGTATAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
131 AAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
*
8526 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAATGAAGATT
196 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATT
* * * *
8591 ATTATAAGAAGTCATTTTTGCTTCATTTGACATACGAACTCAAAATGTAAGGAAAATCGTGGCAA
261 ATTATAAGAAGTCATGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCGTGGCAA
* * * *
8656 GAAAAGCTCTTCTTGCAAAACCAGTGCATCAACTTTCTGTATCCCGATGAAGATAACGTGTTTAT
326 GAAGAGCTTTTCTTGCAAAACCAATGCGTCAA-----TG-A-----AT----ATAACGTGTTTAT
* *
8721 GGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTA
376 GGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTA
* * * *
8786 AACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAATAATATTG
441 AACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCG
8851 TGTATCCCAAAAAGGAGAATGT-TTTTGTTTGCCTAATCATGGAAAGAATGATGATTATTATAAG
506 TGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGATGATTATTATAAG
* * *
8915 AACCCTTGTTCGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCT
571 AATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCATGGCAAGAAAAGCT
* * * *
8980 TTTCTTTCAAAACCAATTCATCAATATTGTGCCTCCCAATGAAGATAACGTGTTTATGGTACCCA
636 TTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGTGCCCA
* *
9045 ATCATTGAAAGAATTGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTC
701 ATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTA
*
9110 TTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTTTATCCC
766 TTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCC
* *
9175 AAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAATGAAGATTATTATAAGAAGTCATG
831 AAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAAGTCATT
*
9240 TTTGTTTCATCAAACATACGAACTCA
896 TTTGTTTCATCTAACATACGAACTCA
*
9266 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAG
1 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
*
9331 CTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
66 CTGTTTATGGTGCCGAATCATTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
* *
9396 AAAGTATAAACTTTTATTCTAAGTAAAATGGTTGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
131 AAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
* *
9461 TAATATCGTGTATCCCAAAGAGGAGAATGTGTTTTGATTGCCTAATCATGGAAAGAATGAAGATT
196 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATT
* * *
9526 ATTATAAGAATTCATGTTTATTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCGTGGTAA
261 ATTATAAGAAGTCATGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCGTGGCAA
*
9591 GAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAACTTGTTTATGGTGCCGAATCATT-
326 GAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAACGTGTTTATGGTGCCGAATCATTG
* * *
9655 AACTGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTGTATTCTAA
391 AA-AGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAA
*
9720 GGAAAATGGTAGTGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAG
455 GGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAG
* * *
9785 GAGAATATGTTTTGTTTGCCTAATCATGGAAAGAATGAAT-ATTATAATAAGAATCCATGTTTGT
520 GAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG-ATGATTATTATAAGAATCCTTGTTTGT
* * * * * *
9849 TTTATCTAA-AGCACAAACACAAAATGTAAGGAAAATCGTGGCAAGAAAAGCTCTTCTTGCAAAA
584 TTCATCTAACA-TACGAACTCAAAATGTAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* * * *
9913 CCAATGCATCAACT-TTCTGTATCCCGATGAAGATAATGTGTTTATGGTGCCCAATCATTGAAAG
648 CCAATGCATCAA-TATTGTGCATCCCAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAG
*
9977 AATGGAGATTATTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGG-AA
712 AATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAA
* * *
10041 ATAGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGA
777 AT-GGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGA
* * *
10106 ATGTTTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAA-CCCTTGTTTGTTTCA
841 ATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAAGTCATT-TTTGTTTCA
*
10170 TCTAATATACGAACTCA
905 TCTAACATACGAACTCA
* * * * * * *
10187 AATTATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCATCAATATTGTGCCT
1 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGC--AA--AA--C--C-A-A---TGCGT
* * * **
10252 CCCAATGAAGATAACGTGTTTATTGATGAAAACCAAGGAAGGTCCATTG-AAGACAAAGACCTGA
53 --CAATGAATATAACCTGTTTA-TGGTG----CC---GAA--T-CATTGAAAGA-AGGGA---G-
**** * * * * * * *** **** *** *
10316 AGGCGTTGGAAGGATTTCAAG---GAC-CA-ATAACGAGGGCAAAGGCAAAGAGGATAAAGGAAG
100 ATTTTTTCGTA-GA-TCCATGTTTGTCTCATTTAA--AGTATAAA--CTTTTATTCT-AAGGAAA
** * *** * * ** * * * *
10376 A-CCTAGAG-AAGATGGTTGCTGGCCTATTTGAAAGT-AGACCCAATTTGGAGT-TAGAAG-AGC
158 ATGGTAGAGAAAAAACTTTTCT---C-A--CGAAA-TCA-AAGC-A-TT--AATATCG-TGTATC
** * * * * * * * * *
10436 CCAAGCTAGTTA-ATTGCATATATTTGGAAGATATGGGCTCCAATGGATTGAATTAGGACTTG-G
210 CCAA-AAAG-GAGAATG--TGT-TTT----G-T-T-TGC-CTAAT-CATGGAA--A-GA-ATGAA
* * * * * * * * ** ** ** **
10499 GTTATTTTGTAATAA-AGGGCCTGCTGGTTGTGA-CTTAC-TTTGGGCTTTATTTAGCATAA--A
257 G--ATTAT-T-ATAAGAAGTCATGTTTGTT-TCATCTAACATACGAACTCAAAAT-G--TAAGGA
* * * * ** * *
10559 AACTTGTTATTTGGGTTTAAGTAAGAG-TTGGGCTTGTTAGCATAATAAGCCCTTTAGGGT--TT
314 AAATCG-----T-GG--CAAG-AAGAGCTT----TTCTT-GC--AA-AA--CCAAT-GCGTCAAT
** * * * * ** * * * **** *
10621 GTGT-TATCTATGACTTATGAGGGCATATATAAGCTCTTG-TA-AA--CAGATTTGGAGGGGGCA
359 GAATATAAC-GTG-TTTATG-GTGCCGA-AT---C-ATTGAAAGAATGGAGATTT---TTTCGTA
* * ** * * * * * * ***** **
10681 GACATTCATATTT-TCAGA-TTAAA---CACA-TTTT-GTGTGAGG---GT-GT-GATTCTTAGG
413 G--ATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAAC
* * ** * * * * ** * * * ***
10734 TTCT-TGA-GTGAGC-CA--ATT--TTTC-TGGATCTTATCAAGAGGCCAAAACTCTTGTGGCGA
476 TTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCA--AAAAGG--AGAA-T-GTGTTTTG-
* * ** ** * * ** * * * * *
10791 TCATT-CCT--T-TTGGCTTATCAATCTTG-TGATTGTGGCGCCAT-CTT-TCATCTCTAATCTA
534 T--TTGCCTAATCATGG--AAAGAATGATGATTATTAT-AAG-AATCCTTGT-TTGTTTCATCTA
* ** ** ***** **** * ** ** *
10849 TTCCATTTTGTTATTTTTTTCTGCTTCTTTCAAATTC-TGTTCTTGCATCAATATTCTGTTTATT
592 --ACA-TACG--AACTCAAAATG--T-AAGGAAAATCATG-----GCAAGAA-AAGCT-TTTCTT
** * * * *** * * * ** * *
10913 ATTAGAAATCC-ATCTCAAGATCATTATT-TAGGCAACCTTGGTTCATGGTTGTCATCATTTATG
642 -GCA-AAA-CCAAT-GC---ATCAATATTGT--GCATCC--CAATGA-AGATAACGT-GTTTATG
* *
10976 GTACCCAATCATTGAAAGAATTGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAA
694 GTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAA
*
11041 ACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGT
759 ACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGT
* *
11106 GTATCCAAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAAGAATGAAGATTATTATAAGA
824 GTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGA
* *
11171 AGTCATTTTTGTTTCATTTGACATACGAACTCA
889 AGTCATTTTTGTTTCATCTAACATACGAACTCA
*
11204 AAATGTAAGGAAAGTCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
1 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
11269 CTGTTTATGGTGCCGAATCATTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
66 CTGTTTATGGTGCCGAATCATTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
* * *
11334 AAAGTATAAACTTTTATTCTAAGTAAAATGGTTGAGAAAAAACTTTTCTCATGAAATCAAAGCAT
131 AAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
* *
11399 TAATATCGTGTATCCCAAAGAGGAGAATGTGTTTTGATTGCCTAATCATGGAAAGAATGAAGATT
196 TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATT
* *
11464 ATTATAAGAATTCATGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCGTGGTAA
261 ATTATAAGAAGTCATGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCGTGGCAA
*
11529 GAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAACTTGTTTATGGTGCCGAATCATT-
326 GAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAACGTGTTTATGGTGCCGAATCATTG
* * *
11593 AACTGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTGTATTCTAA
391 AA-AGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAA
* *
11658 GGAAAATGGTAGGGAAAAAACCTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAG
455 GGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAG
* * *
11723 GAGAATATGTTTTGTTTGCCTAATCATGGAAAGAATGAAT-ATTATAATAAGAATCCATGTTTGT
520 GAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG-ATGATTATTATAAGAATCCTTGTTTGT
* * * * * *
11787 TTTATCTAA-AGCACAAACACAAAATGTAAGGAAAATCTTGGCAAGAAAAGCTCTTCTTGCAAAA
584 TTCATCTAACA-TACGAACTCAAAATGTAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* * * * *
11851 CCAATGCATCAACT-TTCTGTATCCCGATGAAGATAACGTGTTTATGGTGTCGAATCATTGAAAG
648 CCAATGCATCAA-TATTGTGCATCCCAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAG
*
11915 AATGGAGATTATTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAA
712 AATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAA
* * * * *
11980 TTGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAATAATATTGTGTAAT-CCAAAAACGAGA
777 ATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGT-ATCCCAAAAAGGAGA
*
12044 ATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAA-TCCTTGTTTGTTTCA
841 ATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAAGTCATT-TTTGTTTCA
12108 TCTAACATACGAACTCA
905 TCTAACATACGAACTCA
* * * * * *
12125 AAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCATTAATATTGTGCCT
1 AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAA-C----C----A-A---TGCGT
* * * * * * * *
12190 CCCAAAGAAGATAACGTGTTTATGGTGCCCAAACATTGAATGAATGGAGACTTTTTCGTAGATCC
53 --CAATGAATATAACCTGTTTATGGTGCCGAATCATTGAAAGAAGGGAGATTTTTTCGTAGATCC
* * *
12255 ATGTTTGTCTCGTTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTTGAGAAAAAACTTTTCTA
116 ATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTC
* * * * * * ** *
12320 ATGAAATCAAAGCAATAATATCTTGTATCCCAAAGAGGAAAACGTGTTTTGGATGCGTAATCATG
181 ACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG
* * * * * ** *
12385 GAAATAATGAAGATTTTTATAAGAA-TCCATGCTTGTTTCATTTAACATACGAACACAAAAAATG
246 GAAAGAATGAAGATTATTATAAGAAGT-CATGTTTGTTTCATCTAACATACGAACTCAAAATGTA
*
12449 AGGAAAATCGTGGCAAGGAA-AGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAACCTGTTT
310 AGGAAAATCGTGGCAA-GAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAACGTGTTT
*
12513 ATGGTGTTGAATCGTTGAAAGAAGGGAGATGAACGTGTTTATGGTGCCCAAACATTGAATGAATG
374 AT-G-G-TG---C-----------CGA-AT---C------AT--TG-------A---AA-GAATG
* * *
12578 GAGACTTTTTCGTAGATCCATGTTTGTCTCATTTACAGTATAAACTTTTATTCTAAGGAAAATGG
399 GAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGG
* * * * * * * *
12643 TTGAGAAAAAACTTTTCTAATGAAATCAAAGCAATAATATCTTGTATCCCAAAGAGGAAAACGTG
464 TAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTG
** * * * * * *
12708 TTTTGAATGCGTAATCATGGAAACAATGAAGATTTTTATAAGAATCCATGCTTGTTTCA-CTTAA
529 TTTTGTTTGCCTAATCATGGAAAGAATGATGATTATTATAAGAATCCTTGTTTGTTTCATC-TAA
** * * **
12772 CATACGAACTCAAAAAATGAGGAAAATCATGGCAAGGAAAGCTTTTCTTGCAAAACCAATGCGCC
593 CATACGAACTCAAAATGTAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATC
* * * * * *
12837 AATATTGTGCATCCCAATGAAGACAACGTCTTCATGGGGCCCAATCACTGAAAGAATTGAGATTT
658 AATATTGTGCATCCCAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTT
* *
12902 TTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTTTAAGGAAAATGGTAGAGAA
723 TTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAA
* **
12967 AAAACTTTTCTCACAAAATCAAAGCATTAATATCGTGTATCCCAACGAGGAGAATGTGTTTTGTT
788 AAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTT
*
13032 TGCCTAATCACGGAAAGAATGAAGA
853 TGCCTAATCATGGAAAGAATGAAGA
13057 ATCAAGGAAA
Statistics
Matches: 10479, Mismatches: 1187, Indels: 882
0.84 0.09 0.07
Matches are distributed among these distances:
904 5 0.00
905 269 0.03
906 544 0.05
907 276 0.03
908 6 0.00
909 4 0.00
910 2 0.00
911 6 0.00
912 7 0.00
913 3 0.00
914 2 0.00
915 1 0.00
916 4 0.00
917 6 0.00
918 11 0.00
919 156 0.01
920 936 0.09
921 1400 0.13
922 327 0.03
923 101 0.01
924 11 0.00
925 13 0.00
926 10 0.00
927 5 0.00
928 5 0.00
929 10 0.00
930 19 0.00
931 4 0.00
932 414 0.04
933 501 0.05
934 135 0.01
935 2106 0.20
936 1054 0.10
937 736 0.07
938 20 0.00
939 15 0.00
940 13 0.00
941 10 0.00
942 6 0.00
943 4 0.00
944 7 0.00
945 11 0.00
946 27 0.00
947 21 0.00
948 8 0.00
949 10 0.00
950 17 0.00
951 17 0.00
952 14 0.00
953 19 0.00
954 3 0.00
955 1 0.00
956 3 0.00
957 12 0.00
958 22 0.00
959 11 0.00
960 4 0.00
961 11 0.00
962 9 0.00
963 3 0.00
964 7 0.00
965 8 0.00
966 2 0.00
967 1 0.00
969 2 0.00
971 1 0.00
972 2 0.00
973 8 0.00
974 7 0.00
975 6 0.00
976 426 0.04
977 12 0.00
978 4 0.00
979 11 0.00
980 21 0.00
981 12 0.00
982 3 0.00
983 1 0.00
984 1 0.00
985 17 0.00
986 14 0.00
987 17 0.00
988 17 0.00
989 10 0.00
990 8 0.00
991 22 0.00
992 27 0.00
993 12 0.00
994 7 0.00
995 4 0.00
996 5 0.00
997 10 0.00
998 13 0.00
999 13 0.00
1000 15 0.00
1001 4 0.00
1002 20 0.00
1003 9 0.00
1004 14 0.00
1005 11 0.00
1006 4 0.00
1007 2 0.00
1008 6 0.00
1009 4 0.00
1011 3 0.00
1012 6 0.00
1013 6 0.00
1015 5 0.00
1016 3 0.00
1017 242 0.02
1018 7 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.32
Consensus pattern (921 bp):
AAATGTAAGGAAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAAC
CTGTTTATGGTGCCGAATCATTGAAAGAAGGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
AAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCAT
TAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATT
ATTATAAGAAGTCATGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCGTGGCAA
GAAGAGCTTTTCTTGCAAAACCAATGCGTCAATGAATATAACGTGTTTATGGTGCCGAATCATTG
AAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAG
GAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGG
AGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGATGATTATTATAAGAATCCTTGTTTGTTT
CATCTAACATACGAACTCAAAATGTAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAACCA
ATGCATCAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATG
GAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGG
TAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTG
TTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAAGTCATTTTTGTTTCATCTAAC
ATACGAACTCA
Found at i:6803 original size:158 final size:159
Alignment explanation
Indices: 5971--7412 Score: 715
Period size: 158 Copynumber: 9.3 Consensus size: 159
5961 TTTTCGTAGA
* * *** * *
5971 TCCATGTTTGTCTCATTTAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAACC-TT
1 TCCATGTTTGTTTCATTTAAAGTACAAACTCAAAATCTAAGGAAAATGGCAGAG-AAAAACCTTT
* *
6035 TCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAAT
65 TCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAAT
* * *
6100 CCTGGAAAGAATGAATATTATAATAAGAA-
130 CATGGAAAGAATGAAGATTATTATAAGAAG
* * * * * *
6129 TCCATGTTTGTTTTATCTAAAGCACAAACACAAAATGTAAGGAAAATCTTGGCA-AG-AAAAGCT
1 TCCATGTTTGTTTCATTTAAAGTACAAACTCAAAATCTAAGGAAAA---TGGCAGAGAAAAACCT
* ** * * * * * * * * *
6192 CTTCTTGCAAAACCAATGCATCAACTTTC-TGTATCCCAATGAA-GATAACGTGTTTATG-GTGC
63 TTTCTCACGAAATCAAAGCATTAA-TATCGTGTATCCCAA-AAAGGAGAATGTGTTT-TGTTTGC
* * * *
6254 CCAATCATTGAAAGAATGGAGATTATT-T-CGTAG
125 CCAATCATGGAAAGAATGAAGATTATTATAAGAAG
* ** *** * * *
6287 ATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTT
1 -TCCATGTTTGTTTCATTTAAAGTACAAACTCAAAATCTAAGGAAAATGGCAGAGAAAAACCTTT
* * *
6352 TCTCACGAAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGAATGT-TTTTGTTTGCCTAAT
65 TCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAAT
*
6416 CATGGAAAGAATGATGATTATTATAAGAA-
130 CATGGAAAGAATGAAGATTATTATAAGAAG
* * * * * * *
6445 CCCTTGTTCGTTTCATCTAACA-TACGAACTCAAAATATAAGGAAAATCATGGCA-AG-AAAAGC
1 TCCATGTTTGTTTCATTTAA-AGTACAAACTCAAAATCTAAGG-AAA--ATGGCAGAGAAAAACC
** * * ** * * ** * * * * *
6507 TTTTCTTTCAAAACCAATTCATCAATATTGTGCCTCCCAATGAA-GATAACGTGTTTATG-GTAC
62 TTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAA-AAAGGAGAATGTGTTT-TGTTTGC
* ** *
6570 CCAATCATTGAAAGAATTG-AGATT-TT-TTCGTAG
125 CCAATCATGGAAAGAA-TGAAGATTATTATAAGAAG
* ** ***** *
6603 ATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAACCTTT
1 -TCCATGTTTGTTTCATTTAAAGTACAAACTCAAAATCTAAGGAAAATGGCAGAGAAAAACCTTT
6668 TCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAAT
65 TCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAAT
6733 CATGGAAAGAATGAAGATTATTATAAGAAG
130 CATGGAAAGAATGAAGATTATTATAAGAAG
* * * * * *
6763 T-CATTTTTGTTTCATTTGACA-TACGAACTCAAAATGTAAGGAAAATCGTGCCA-AG-AAGAGC
1 TCCATGTTTGTTTCATTT-AAAGTACAAACTCAAAATCTAAGGAAAAT-G-G-CAGAGAAAAACC
** * * * * * * * ** * * *
6824 TTTTCTTGCAAAACCAATGC-GTCA-A---TG-A----ATATA--A-CCTGT-TTATG-GTGCCG
62 TTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCC
* * * * ** *
6874 AATCGTTGAAAGAAGGGAGATT-TT-TTCGTAG
127 AATCATGGAAAGAATGAAGATTATTATAAGAAG
* ** ***** * *
6905 ATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTT
1 -TCCATGTTTGTTTCATTTAAAGTACAAACTCAAAATCTAAGGAAAATGGCAGAGAAAAACCTTT
6970 TCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAAT
65 TCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAAT
*
7035 CGTGGAAAGAATGAAGATTATTATAAGAAG
130 CATGGAAAGAATGAAGATTATTATAAGAAG
* * * * * *
7065 T-CATTTTTGTTTCATTTGACA-TACGAACTCAAAATGTAAGGAAAATCGTGCCA-AG-AAGAGC
1 TCCATGTTTGTTTCATTT-AAAGTACAAACTCAAAATCTAAGGAAAAT-G-G-CAGAGAAAAACC
** * * * * * * * ** * * *
7126 TTTTCTTGCAAAACCAATGC-GTCA-A---TG-A----ATATA--A-CCTGT-TTATG-GTGCCG
62 TTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCC
* * * * ** *
7176 AATCGTTGAAAGAAGGGAGATT-TT-TTCGTAG
127 AATCATGGAAAGAATGAAGATTATTATAAGAAG
* * *** * * ** *
7207 ATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGTAAAATGGTTGAGAAAAAACTTT
1 -TCCATGTTTGTTTCATTTAAAGTACAAACTCAAAATCTAAGGAAAATGGCAGAGAAAAACCTTT
* * *
7272 TCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAGAGGAGAATGTGTTTTGATTGCCTAAT
65 TCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAAT
7337 CATGGAAAGAATGAAGATTATTATAAGAA-
130 CATGGAAAGAATGAAGATTATTATAAGAAG
* * * * *
7366 TTCATGTTTATTTCATCTAACA-TACGAACTCAAAATGTAAGGAAAAT
1 TCCATGTTTGTTTCATTTAA-AGTACAAACTCAAAATCTAAGGAAAAT
7413 CGTGGTAAGA
Statistics
Matches: 904, Mismatches: 293, Indels: 174
0.66 0.21 0.13
Matches are distributed among these distances:
141 1 0.00
142 14 0.02
143 50 0.06
144 110 0.12
145 10 0.01
146 6 0.01
147 2 0.00
148 4 0.00
149 8 0.01
153 8 0.01
154 4 0.00
155 2 0.00
156 18 0.02
157 85 0.09
158 340 0.38
159 201 0.22
160 35 0.04
161 6 0.01
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (159 bp):
TCCATGTTTGTTTCATTTAAAGTACAAACTCAAAATCTAAGGAAAATGGCAGAGAAAAACCTTTT
CTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATC
ATGGAAAGAATGAAGATTATTATAAGAAG
Found at i:8026 original size:158 final size:158
Alignment explanation
Indices: 7509--8346 Score: 499
Period size: 158 Copynumber: 5.3 Consensus size: 158
7499 TTTTTCGTAG
* * * *** * * *
7509 ATCCATGTTTGTCTCATTTAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAACCTT
1 ATCCTTGTTTGTTTCATTTAAAGTACAAACTCAAATTCTAAGGAAATTGGCAGAGAAAAAACTTT
* * * * * *
7574 TCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAAT
66 TCTCACGAAATCAAAGCAATAATATTGTGTATCCAAAAAAGGAGAATGTTTTTTGTTTGCCCAAT
* * * *
7639 CCTAGAAAGAATGAATATTATAATAAGA
131 CATGGAAAGAATGAAGATTATTATAAGA
* * * * * * * *
7667 ATCCATGTTTGTTTTATCTAAAGCACAAACACAAAATGTAAGGAAAATCTTGGCA-AG-AAAAGC
1 ATCCTTGTTTGTTTCATTTAAAGTACAAACTCAAATTCTAAGG-AAA--TTGGCAGAGAAAAAAC
* ** * * * * * ** * * * *
7730 TCTTCTTGCAAAACCAATGC-ATCAACT-TTCTGTATCCCGATGAA-GATAACGTGTTTATG-GT
63 TTTTCTCACGAAATCAAAGCAAT-AA-TATTGTGTAT-CCAAAAAAGGAGAATGT-TTTTTGTTT
* * *
7791 GCCCAATCATTGAAAGAATGGAGATTATT-T-CGTA
124 GCCCAATCATGGAAAGAATGAAGATTATTATAAG-A
* ** ***
7825 GATCCTTGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTT
1 -ATCCTTGTTTGTTTCATTTAAAGTACAAACTCAAATTCTAAGGAAATTGGCAGAGAAAAAACTT
* *
7890 TTCTCACGAAATCAAAGCAATAATATTGTATATCCAAAAAAGGAGAATGTTTTTTGTTTGCCTAA
65 TTCTCACGAAATCAAAGCAATAATATTGTGTATCCAAAAAAGGAGAATGTTTTTTGTTTGCCCAA
7955 TCATGGAAAGAATGAAGATTATTATAAGA
130 TCATGGAAAGAATGAAGATTATTATAAGA
* * * * *
7984 ACCCTTGTTTGTTTCATCTAACA-TACGAACTCAAATTATAAGGAAAATCATGGCA-AG-AAAAG
1 ATCCTTGTTTGTTTCATTTAA-AGTACAAACTCAAATTCTAAGG-AAAT--TGGCAGAGAAAAAA
** * * ** ** ** * * * *
8046 CTTTTCTTTCAAAAGCAATTC-ATCAATATTGTGCCTCCCAATGAA-GATAACGTGTTTATG-GT
62 CTTTTCTCACGAAATCAAAGCAAT-AATATTGTGTAT-CCAAAAAAGGAGAATGT-TTTTTGTTT
* * *
8108 ACCCAATCATTGAAAGAATTG-AGATT-TTTTCATAG-
124 GCCCAATCATGGAAAGAA-TGAAGATTATTAT-A-AGA
* * ** **** * * *
8143 ATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTCTTCTGAGGAAAATGGTAGAGAAAAAACTTT
1 ATCCTTGTTTGTTTCATTTAAAGTACAAACTCAAATTCTAAGGAAATTGGCAGAGAAAAAACTTT
* * * *
8208 TCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAAT
66 TCTCACGAAATCAAAGCAATAATATTGTGTATCCAAAAAAGGAGAATGTTTTTTGTTTGCCCAAT
8273 CATGGAAAGAATGAAGATTATTATAAGA
131 CATGGAAAGAATGAAGATTATTATAAGA
* * * * * *
8301 AGTCATT-TTTGCTTCATTTGACA-TACGAACTCAAAATGTAAGGAAA
1 A-TCCTTGTTTGTTTCATTT-AAAGTACAAACTCAAATTCTAAGGAAA
8347 ATCGTGCCAA
Statistics
Matches: 487, Mismatches: 155, Indels: 76
0.68 0.22 0.11
Matches are distributed among these distances:
156 10 0.02
157 29 0.06
158 219 0.45
159 190 0.39
160 30 0.06
161 9 0.02
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (158 bp):
ATCCTTGTTTGTTTCATTTAAAGTACAAACTCAAATTCTAAGGAAATTGGCAGAGAAAAAACTTT
TCTCACGAAATCAAAGCAATAATATTGTGTATCCAAAAAAGGAGAATGTTTTTTGTTTGCCCAAT
CATGGAAAGAATGAAGATTATTATAAGA
Found at i:8040 original size:317 final size:314
Alignment explanation
Indices: 56--30994 Score: 14550
Period size: 317 Copynumber: 96.9 Consensus size: 314
46 CAATGCGTCA
* * * * *
56 ATGAATATAACCTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
* ** * * *
121 TTGTCTCATTTAAAGTATAAACTTTTATTCTAATTAAAATGGTTGAGAAAAAACTTTTCTAATGA
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
* *
186 AATCTAAGCATTAATATCGTGTATCCCAACAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA
131 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA
* *
251 GAATGAAGATTATTATAAGAATTCATGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAA
196 GAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAA
* * *
316 AATCGTGGTAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
261 AATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* ** * **
362 AT----ATAACCTGTTTATGGTAACGAATCATTGACTGAATGGAGATTTTTTCGTAGATCCATGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
** * *
423 TTGTCTCATTTAAAGAATAAACTTTTATTCTAAGGAAAATAGTAGAGAAAAAACTTTTCTCACAA
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
*
488 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCAGTGGAA
131 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCA-TGGAA
* * * * * * * *
553 AGAATTAATATTATAATAAGAATCCATGTTTGTTTTATCTAACGTACAAACACAAAATGTAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* *
618 AAATCGTGGCAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACTTTTTGTATCCC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA--TTTTGCATCCC
*
675 GATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* *
740 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* *
805 AAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGAATGT-TTTTGTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * *
869 AGAATGATGATTATTATAAGAACCCTTGTTCGTTTCATCTAACATACGAACTCAAAATATAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * * *
934 AAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCATCAATATTGTGCCTCCC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-TT-TGCATCCC
* *
991 AATGAAGATAACGTGTTTATGGTACCCAATCATTGAAAGAATTGAGATTTTTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
*
1056 TTTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
*
1121 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * *
1186 AGAATGAAGATTATTATAAGAAGTCATT-TTTGTTTCATTTGACATACGAACTCAAAATGTAAGG
195 AGAATGAAGATTATTATAAGAA-TCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* * *
1250 AAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * * *
1298 AT----ATAACCTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
*
1359 TTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
* *
1424 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCGTGGAAA
131 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA
* * *
1489 GAATGAAGATTATTATAAGAAGTCATT-TTTGTTTCATTTGACATACGAACTCAAAATGTAAGGA
196 GAATGAAGATTATTATAAGAA-TCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * * *
1553 AAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TGAAT---
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * * *
1602 AT-AAG----CCTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
* * *
1662 TTGTCTCATTTAAAGTATAAACTTTTATTCTAAGTAAAATGGTTGAGAAAAAACTTTTCTCACGA
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
* *
1727 AATCAAAGCATTAATATCGTGTATCCCAAAGAGGAGAATGTGTTTTGATTGCCTAATCATGGAAA
131 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA
* * *
1792 GAATGAAGATTATTATAAGAATTCATGTTTATTTCATCTAACATACGAACTCAAAATGTAAGGAA
196 GAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAA
* * *
1857 AATCGTGGTAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
261 AATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * *
1903 AT----ATAACTTGTTTATGGTGCCGAATCATT-AACTGAATGGAGATTTTTTCGTAGATCCATG
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAA-AGAATGGAGATTTTTTCGTAGATCCATG
* * *
1963 TTTGTCTCATTTAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAACCTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* *
2028 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCCTGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * * * * *
2093 AGAATGAATATTATAATAAGAATCCATGTTTGTTTTATCTAA-AGCACAAACACAAAATGTAAGG
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACA-TACGAACTCAAAATGTAAGG
* * *
2157 AAAATCTTGGCAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACTTTCTGTATCCC
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TTT-TGCATCCC
*
2215 GATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* *
2280 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* * *
2345 AAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGAATGTTTTTTGTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * *
2410 AGAATGAATGATTATTATAAGAACCCTTGTTTGTTTCATCTAACATACGAACTCAAATTATAAGG
195 AGAATGAA-GATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* * * *
2475 AAAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCATCAATATTGTGCCTCCC
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-TT-TGCATCCC
* * *
2533 AATGAAGATAACGTGTTTATGGTACCCAATCATTGAAAGAATTGAGATTTTTTCATAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
*
2598 TTTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
*
2663 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * *
2728 AGAATGAAGATTATTATAAGAAGTCATT-TTTGCTTCATTTGACATACGAACTCAAAATGTAAGG
195 AGAATGAAGATTATTATAAGAA-TCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* * *
2792 AAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * * *
2840 AT----ATAACCTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
* * *
2901 TTGTCTCATTTAGAGTATAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
*
2966 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAA
131 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA
* * * *
3031 GAATGAAGATTATTATAAGAAGTCATT-TTTGCTTCATTTGACATACGAACTCAAAATGTAAGGA
196 GAATGAAGATTATTATAAGAA-TCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * *
3095 AAATCGTGGCAAGAAAAGCTCTTCTTGCAAAACCAGTGCATCAACTTTCTGTATCCC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TTT-TGCATCCC
*
3152 GATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* *
3217 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* *
3282 AAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGAATGT-TTTTGTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * *
3346 AGAATGATGATTATTATAAGAACCCTTGTTCGTTTCATCTAACATACGAACTCAAAATATAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * * *
3411 AAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCATCAATATTGTGCCTCCC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-TT-TGCATCCC
* *
3468 AATGAAGATAACGTGTTTATGGTACCCAATCATTGAAAGAATTGAGATTTTTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
*
3533 TTTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
*
3598 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * *
3663 AGAATGAAGATTATTATAAGAAGTCATT-TTTGTTTCATTTGACATACGAACTCAAAATGTAAGG
195 AGAATGAAGATTATTATAAGAA-TCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* * *
3727 AAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * * *
3775 AT----ATAACCTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
* * * *
3836 TTGTCTCATTTAGAGTATAAACTTTTCTTCTAAGGAAAATGGTAGACAAAAAACTTTTCTCACGA
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
*
3901 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAA
131 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA
* * * *
3966 GAATGAAGATTATTATAAGAAGTCATT-TTTGCTTCATTTGACATACGAACTCAAAATGTAAGGA
196 GAATGAAGATTATTATAAGAA-TCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * * *
4030 AAATCATGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * * * *
4077 AT----ATAACCTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAAATCCATGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
* * * *
4138 TTGTCTCATTTAGAGTATAAACTTTTATTCTAAGTAAAATGGTTGAGAAAAAACTTTTCTCACGA
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
* *
4203 AATCAAAGCATTAATATCGTGTATCCCAAAGAGGAGAATGTGTTTTGATTGCCTAATCATGGAAA
131 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA
* *
4268 GAATGAAGATTATTATAAGAATTCATGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAA
196 GAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAA
* * * *
4333 AATCATGGTAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
261 AATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* *
4379 AT----ATAACTTGTTTATGGTGCCGAATCATT-AACTA-AATGGAGATTTTTTCGTAGATCCAT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAA--AGAATGGAGATTTTTTCGTAGATCCAT
* * *
4438 GTTTGTCTCATTTAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAACCTTTCTCAC
64 GTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAC
* *
4503 GAAAGCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCATGGA
129 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
* * * * * * *
4568 AAGAATGAATATTATAATAAGAATCCATGTTTGTTTTATCTAA-AGCACAAACACAAAATGTAAG
194 AAGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACA-TACGAACTCAAAATGTAAG
* * *
4632 GAAAATCGTGGCAAGAAAAGCTCTTCTTGCAAAACCAGTGCATCAACTTTCTGTATCCC
258 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TTT-TGCATCCC
*
4691 GATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* *
4756 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* *
4821 AAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGAATGT-TTTTGTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * *
4885 AGAATGATGATTATTATAAGAACCCTTGTTCGTTTCATCTAACATACGAACTCAAAATATAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * * *
4950 AAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCATCAATATTGTGCCTCCC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-TT-TGCATCCC
* * *
5007 AATGAAGATAACGTGTTTATGGTACCCAATCATTGACAGAATTGAGATTTTTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
*
5072 TTTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
*
5137 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * *
5202 AGAATGAAGATTATTATAAGAAGTCATT-TTTGTTTCATTTGACATACGAACTCAAAATGTAAGG
195 AGAATGAAGATTATTATAAGAA-TCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* * *
5266 AAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * * *
5314 AT----ATAACCTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
*
5375 TTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
* *
5440 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCGTGGAAA
131 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA
* * *
5505 GAATGAAGATTATTATAAGAAGTCATT-TTTGTTTCATTTGACATACGAACTCAAAATGTAAGGA
196 GAATGAAGATTATTATAAGAA-TCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * *
5569 AAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * * *
5616 AT----ATAACCTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
* * *
5677 TTGTCTCATTTAAAGTATAAACTTTTATTCTAAGTAAAATGGTTGAG-AAAAACTTTTCTCACGA
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
* * * *
5741 AATCAAAGTATTAATATCGTGTATCCCAAAGAGGAGAATGTGTTTTGATTACCTAATCATGGAAA
131 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA
* * *
5806 GAATGAAGATTATTATAAGAATTCATGTTTATTTCATCTAACATACGAACTCAAAATGTAAGGAA
196 GAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAA
* * *
5871 AATCGTGGTAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
261 AATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * *
5917 AT----ATAACTTGTTTATGGTGCCGAATCATT-AACTGAATGGAGATTTTTTCGTAGATCCATG
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAA-AGAATGGAGATTTTTTCGTAGATCCATG
* * *
5977 TTTGTCTCATTTAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAACCTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* *
6042 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCCTGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * * * * *
6107 AGAATGAATATTATAATAAGAATCCATGTTTGTTTTATCTAA-AGCACAAACACAAAATGTAAGG
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACA-TACGAACTCAAAATGTAAGG
* * *
6171 AAAATCTTGGCAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACTTTCTGTATCCC
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TTT-TGCATCCC
*
6229 AATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* *
6294 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* *
6359 AAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGAATGT-TTTTGTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * *
6423 AGAATGATGATTATTATAAGAACCCTTGTTCGTTTCATCTAACATACGAACTCAAAATATAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * * *
6488 AAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCATCAATATTGTGCCTCCC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-TT-TGCATCCC
* *
6545 AATGAAGATAACGTGTTTATGGTACCCAATCATTGAAAGAATTGAGATTTTTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* *
6610 TTTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAACCTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
*
6675 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * *
6740 AGAATGAAGATTATTATAAGAAGTCATT-TTTGTTTCATTTGACATACGAACTCAAAATGTAAGG
195 AGAATGAAGATTATTATAAGAA-TCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* * *
6804 AAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * * *
6852 AT----ATAACCTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
*
6913 TTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
* *
6978 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCGTGGAAA
131 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA
* * *
7043 GAATGAAGATTATTATAAGAAGTCATT-TTTGTTTCATTTGACATACGAACTCAAAATGTAAGGA
196 GAATGAAGATTATTATAAGAA-TCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * *
7107 AAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * * *
7154 AT----ATAACCTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
* * *
7215 TTGTCTCATTTAAAGTATAAACTTTTATTCTAAGTAAAATGGTTGAGAAAAAACTTTTCTCACGA
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
* *
7280 AATCAAAGCATTAATATCGTGTATCCCAAAGAGGAGAATGTGTTTTGATTGCCTAATCATGGAAA
131 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA
* * *
7345 GAATGAAGATTATTATAAGAATTCATGTTTATTTCATCTAACATACGAACTCAAAATGTAAGGAA
196 GAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAA
* * *
7410 AATCGTGGTAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
261 AATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * *
7456 AT----ATAACTTGTTTATGGTGCCGAATCATT-AACTGAATGGAGATTTTTTCGTAGATCCATG
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAA-AGAATGGAGATTTTTTCGTAGATCCATG
* * *
7516 TTTGTCTCATTTAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAACCTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* * *
7581 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCCTAGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * * * * *
7646 AGAATGAATATTATAATAAGAATCCATGTTTGTTTTATCTAA-AGCACAAACACAAAATGTAAGG
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACA-TACGAACTCAAAATGTAAGG
* * *
7710 AAAATCTTGGCAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACTTTCTGTATCCC
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TTT-TGCATCCC
* *
7768 GATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCCTTG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* *
7833 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* * * * *
7898 AAATCAAAGCAATAATATTGTATATCCAAAAAAGGAGAATGTTTTTTGTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * *
7963 AGAATGAAGATTATTATAAGAACCCTTGTTTGTTTCATCTAACATACGAACTCAAATTATAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * * * *
8028 AAATCATGGCAAGAAAAGCTTTTCTTTCAAAAGCAATTCATCAATATTGTGCCTCCC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-TT-TGCATCCC
* * *
8085 AATGAAGATAACGTGTTTATGGTACCCAATCATTGAAAGAATTGAGATTTTTTCATAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* *
8150 TTTGTCTCATTTAAAGTGTAAACTTTTCTTCTGAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
*
8215 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * *
8280 AGAATGAAGATTATTATAAGAAGTCATT-TTTGCTTCATTTGACATACGAACTCAAAATGTAAGG
195 AGAATGAAGATTATTATAAGAA-TCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* * *
8344 AAAATCGTGCCAAG---AGCTTCTCTTGCAAAACCAATGCGTCAA---TG-A----
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * * *
8389 AT----ATAACCTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
* * *
8450 TTGTCTCATTTAGAGTATAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
*
8515 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAA
131 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA
* * * *
8580 GAATGAAGATTATTATAAGAAGTCATT-TTTGCTTCATTTGACATACGAACTCAAAATGTAAGGA
196 GAATGAAGATTATTATAAGAA-TCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * *
8644 AAATCGTGGCAAGAAAAGCTCTTCTTGCAAAACCAGTGCATCAACTTTCTGTATCCC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TTT-TGCATCCC
*
8701 GATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* *
8766 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* *
8831 AAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGAATGT-TTTTGTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * *
8895 AGAATGATGATTATTATAAGAACCCTTGTTCGTTTCATCTAACATACGAACTCAAAATATAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * * *
8960 AAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCATCAATATTGTGCCTCCC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-TT-TGCATCCC
* *
9017 AATGAAGATAACGTGTTTATGGTACCCAATCATTGAAAGAATTGAGATTTTTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
*
9082 TTTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* *
9147 AAATCAAAGCATTAATATCGTTTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* *
9212 AGAATGAAGATTATTATAAGAAGT-CATGTTTGTTTCATCAAACATACGAACTCAAAATGTAAGG
195 AGAATGAAGATTATTATAAGAA-TCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* * * *
9276 AAAATCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TGAAT---
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * *
9326 AT-AAG----C-TGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCGTAGATCCATGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
* * *
9385 TTGTCTCATTTAAAGTATAAACTTTTATTCTAAGTAAAATGGTTGAGAAAAAACTTTTCTCACGA
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
* *
9450 AATCAAAGCATTAATATCGTGTATCCCAAAGAGGAGAATGTGTTTTGATTGCCTAATCATGGAAA
131 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA
* * *
9515 GAATGAAGATTATTATAAGAATTCATGTTTATTTCATCTAACATACGAACTCAAAATGTAAGGAA
196 GAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAA
* * *
9580 AATCGTGGTAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
261 AATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * *
9626 AT----ATAACTTGTTTATGGTGCCGAATCATT-AACTGAATGGAGATTTTTTCGTAGATCCATG
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAA-AGAATGGAGATTTTTTCGTAGATCCATG
* * *
9686 TTTGTCTCATTTAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGTGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
*
9751 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * * * * *
9816 AGAATGAATATTATAATAAGAATCCATGTTTGTTTTATCTAA-AGCACAAACACAAAATGTAAGG
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACA-TACGAACTCAAAATGTAAGG
* *
9880 AAAATCGTGGCAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACTTTCTGTATCCC
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TTT-TGCATCCC
* *
9938 GATGAAGATAATGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
*
10003 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGG-AAATAGGCAGAGAAAAAACTTTTCTCAC
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAAT-GGTAGAGAAAAAACTTTTCTCAC
* * *
10067 GAAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGAATGTTTTTTGTTTGCCTAATCATGGA
129 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
* * * *
10132 AAGAATGAAGATTATTATAAGAACCCTTGTTTGTTTCATCTAATATACGAACTCAAATTATAAGG
194 AAGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* * * *
10197 AAAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCATCAATATTGTGCCTCCC
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-TT-TGCATCCC
* * ** **
10255 AATGAAGATAACGTGTTTATTGATGAAAACCAAGGAAGGTCCATTG-AAGACAAAGACCTGAAGG
1 -ATGAAGATAACGTGTTTA-TGGTG----CC---CAA--T-CATTGAAAGA-ATGGA---G-ATT
** * * * * * * * * **** *** * *
10319 CGTTGGAAGGATTTCAAG---GAC-CA-ATAACGAGGGCAAAGGCAAAGAGGATAAAGGAAGA-C
49 TTTTCGTA-GA-TCCATGTTTGTCTCATTTAA--AGTGTAAA--CTTTTATTCT-AAGGAAAATG
* * *** * * ** * * ** * * * * **
10378 CTAGAG-AAGATGGTTGCTGGC-CTATTTGAAAGTAGACCCAATTTGGAGT-T---AGAAGAGCC
107 GTAGAGAAAAAACTTTTCT--CACGAAATCAAAG--CA-TTAATATCGTGTATCCCA-AAAAGGA
* ** * * * *
10437 CAA-GCTAG--TTAATTGCATATAT-TTGG-AAGATATGGGCTCCAATGGATTGA--ATTAGGA-
166 GAATG-T-GTTTTGTTTGCCTA-ATCATGGAAAGA-AT--G----AA--GATT-ATTATAAGAAT
* * * * * * ** **** * *** ** *
10494 -CTTGGGTTATTT--TGTAATAAAGGGCCTGCTGGTTGTGACTTACTTTG-GGCTTTATTTAGCA
218 CCTT-GTTTGTTTCATCTAACATACGAACT-CAAAATGTAAGGAAAATCGTGGC---A---AG--
* * *** ** ***** * **
10555 TAAAAACTTGTTATTTGGGTTTAAGTAA-G-AGTTGGGCTTG-TTAGC
273 -AAAAGCTT-TT-CTT--GCAAAACCAATGCA-TCAATTTTGCATCCC
** * **** *** * * * * *
10600 AT--A-ATAA-GCCCTTTAGGGTTTGTGTTATC-TATG-ACTTATGAGGGCA-TATAT--AAGCT
1 ATGAAGATAACG-TGTTTATGG--TGCCCAATCAT-TGAAAGAATG-GAG-ATTTTTTCGTAGAT
* *** ** ** * * * * * **
10656 -CTTG-TAAACAGATTTGGAGGGGGCAGACATTCATATTTTCAGATTAAACACATTTTGTGTGAG
60 CCATGTTTGTCTCATTT--AAAGTGTAAAC-TT-TTATTCT-A-A-GGAA-A-A---TG-GT-AG
* *** ** * ** * * ** **
10719 GGTGTGATTCTTAGGTTCTTGA-GTGAGCCAA-TTTTTCTGGATC-T-TATCAAGAGGCCAAAAC
111 AG-AAAAAACTT---TTC-TCACGAAATCAAAGCATTAAT--ATCGTGTATC------CCAAAA-
* * * * ** * ** **
10780 TCTTGTGGCGATCAT-TCCTTTTGGCTTATC-AATCTTGTGATTG--TGGCGCCATCT-TTCATC
162 -----AGGAGA--ATGT-GTTTT-GTTTGCCTAATCATG-GAAAGAATGAAG--AT-TATT-AT-
*** * * * * ** * ** ** * *
10840 TCTAATCTATTCCATTTTGTTAT-TTTTTTC-TGC-TTCTTTC-AAAT-T-CTG---TTC-TTGC
212 AAGAATC-CTT---GTTTGTT-TCATCTAACATACGAAC--TCAAAATGTAAGGAAAATCGTGGC
** ** * ** * * *
10895 ATCAATATTCTGTTTATTATTAGAAATCC-ATCTCAAGATCATTATTTAGGCAACCTTGGTTC
270 AAGAA-AAGCT-TTTCTT-GCA-AAA-CCAAT-GC---ATCA--ATTT-TGCATCC------C
* ** * * * *
10957 ATG--GTTGTCATCATTTATGGTACCCAATCATTGAAAGAATTGAGATTTTTTCGTAGATCCATG
1 ATGAAGATAACGT-GTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
*
11020 TTTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* *
11085 AAATCAAAGCATTAATATCGTGTATCCAAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * *
11150 AGAATGAAGATTATTATAAGAAGTCATT-TTTGTTTCATTTGACATACGAACTCAAAATGTAAGG
195 AGAATGAAGATTATTATAAGAA-TCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* * * *
11214 AAAGTCGTGCCAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * *
11262 AT----ATAACCTGTTTATGGTGCCGAATCATTGAAAGAAGGGAGATTTTTTCGTAGATCCATGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
* * * *
11323 TTGTCTCATTTAAAGTATAAACTTTTATTCTAAGTAAAATGGTTGAGAAAAAACTTTTCTCATGA
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
* *
11388 AATCAAAGCATTAATATCGTGTATCCCAAAGAGGAGAATGTGTTTTGATTGCCTAATCATGGAAA
131 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA
* *
11453 GAATGAAGATTATTATAAGAATTCATGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAA
196 GAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAA
* * *
11518 AATCGTGGTAAGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
261 AATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * *
11564 AT----ATAACTTGTTTATGGTGCCGAATCATT-AACTGAATGGAGATTTTTTCGTAGATCCATG
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAA-AGAATGGAGATTTTTTCGTAGATCCATG
* * * *
11624 TTTGTCTCATTTAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGGGAAAAAACCTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
*
11689 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * * * * *
11754 AGAATGAATATTATAATAAGAATCCATGTTTGTTTTATCTAA-AGCACAAACACAAAATGTAAGG
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACA-TACGAACTCAAAATGTAAGG
* * *
11818 AAAATCTTGGCAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACTTTCTGTATCCC
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TTT-TGCATCCC
* * *
11876 GATGAAGATAACGTGTTTATGGTGTCGAATCATTGAAAGAATGGAGATTATTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* *
11941 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* * *
12006 AAATCAAAGCAATAATATTGTGTAAT-CCAAAAACGAGAATGTGTTTTGTTTGCCTAATCATGGA
130 AAATCAAAGCATTAATATCGTGT-ATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
*
12070 AAGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATATAAGG
194 AAGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* * * * *
12135 AAAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCATTAATATTGTGCCTCCC
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-TT-TGCATCCC
* * * *
12193 AAAGAAGATAACGTGTTTATGGTGCCCAAACATTGAATGAATGGAGACTTTTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* * * * *
12258 TTTGTCTCGTTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTTGAGAAAAAACTTTTCTAATG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* * * * * ** *
12323 AAATCAAAGCAATAATATCTTGTATCCCAAAGAGGAAAACGTGTTTTGGATGCGTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * * * * ** *
12388 ATAATGAAGATTTTTATAAGAATCCATGCTTGTTTCATTTAACATACGAACACAAAAAATGAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* *
12453 AAATCGTGGCAAGGAAAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* *** * * *** **
12500 AT----ATAACCTGTTTATGGTGTTGAATCGTTGAAAGAAGGGAGA--TGAACGT-G-TTTATG-
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
* * * * * * * * * * *** * * * *
12556 GTGCCCAAACATTGAATGAATGGAGACTTTTTCGTAGATCCATGTTTGTCTCAT-TTACAGTATA
66 TTG-TC--TCATTTAA--AGTGTAAAC--TTT--TA-TTCTAAG---G-AAAATGGTAGAGAAAA
* * **** ** * * * * ** *
12620 AACTTTTATTCTAAGGAAAATGGTTG-AGAAAAAAC-T-T-TTCTAATGAAATCAAAGCAATAAT
117 AAC--TT-TTCTCACG-AAATCAAAGCATTAATATCGTGTATCCCAA--AAA--GGAG-AAT-GT
* * * * ** ** * * * * *** *
12681 ATCTTGTAT-CCCAAAGA-GGAAAACGTGTTTTGAATGCGTAATCATGGAAACAAT-GAAGATT-
172 GTTTTGTTTGCCTAATCATGG-AAA---G-AATGAA-G-ATTATTAT---AAGAATCCTTGTTTG
** * * * * ** ** *
12742 TTT-ATAAGAATCCATGCTTGTTTCACTTAACATACG-AACTCAAAA-AAT-G-AGGAAAA----
227 TTTCAT-CTAA--CATAC--G---AACTCAA-A-ATGTAA-GGAAAATCGTGGCAAGAAAAGCTT
* * * * *
12798 -TCATGGCAAGGA--AA-GC-T--TTTCTTGCAAAACCA
281 TTC-TTGCAA-AACCAATGCATCAATT-TTGC--ATCCC
* ** * * * * * * * * ***
12830 ATG-CGCCAA--T-ATTGTGCAT-CCCAATGA-AGACAACGTCTTCATGGGGCCCAATCACT-GA
1 ATGAAGATAACGTGTTTATG-GTGCCCAATCATTGA-AA-G----AATGGAG---ATTTTTTCG-
* ** * * ** * * ** * ***
12888 AAGAATTGAGATTTTTTCGTAGATCCATGTTTGTCTCA-TTTAAAGTATAAACTTTTATTTTAAG
55 TAG-A-T-CCA-TGTTT-GT--CT-CA---TT-T-AAAGTGTAAACT-TTTA-TTCTA-AGGAA-
* ** * **
12952 GAAAATGGTAGAGAAAAAACTTTTCTCACAAAATCAAAGCATTAATATCGTGTATCCCAACGAGG
103 AATG---GTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGG
* * * **
13017 AGAATGTGTTTTGTTTGCCTAATCACGGAAAGAATGAAGA--ATCA-AGGAAAATCGTGGCAAGG
165 AGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATA--AGAATC----C-TTG
*** * * * * * ** * *
13079 AAAGCTTTTCTTGCAAAACCAATGCGTCAA-TGAATATAACCTGTTTATGGTGCCGAATCGTTGA
223 TTTG--TTTCAT-C-TAA-C-ATACG--AACT-CA-A-AA--TG--TA-AG-G-AAAATCGTGGC
* * * * *
13143 AAGAAGGGAGATTTT-TT------CCTA-G-ATCCATGTTTG--TCTC
270 AAGAA--AAGCTTTTCTTGCAAAACCAATGCATCAAT-TTTGCATCCC
* * ** *** ** *
13180 ATTTAAACTATAAAC-T-TTTATTCTAAGGAAAATGGTTGAGAA-AA---A-ACTTTTCTCACG-
1 A--TGAA-GAT-AACGTGTTTATGGT--GCCCAATCATTGA-AAGAATGGAGA-TTTT-T-TCGT
* * * ** * * * * * *
13237 AAATCAAAGCATTAATATCAGGTATCCCAAAGAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
56 AGATCCATG--TTTGTCTCA--T-T--TAAAGTGTA-AA---CTTTT-ATT--CT-A--A-GG-A
* * * * * * *
13302 AGAAT-GAAGATTATTATAAGAATTCATGTTTGTTTCATCTAAGATACGAA-C-TCAA-A--ATG
102 A-AATGGTAGA-GA--A-AA-AA--C---TTT-TCTCA-CGAA-AT-CAAAGCATTAATATCGTG
*** * * * * ** * *
13361 TA-AGGAAAATTGGGGCAAGATGAGCTTTT-CTTGCAAAACCAATGCGTCAATGAA-GATAACCT
152 TATCCCAAAA-AGGAG--A-ATGTG-TTTTGTTTGCCTAATC-ATG-G--AAAGAATG--AA---
* ** ** * *** *** * ** * * ** ****
13423 GTTTATGGTGCCGAATCATTGAAAGAATGGAGAGTTTTTCGTA-G-A-TC--CATGTTTGTCCCA
203 GATTATTAT-AAGAATCCTTGTTTG--T-TTCA-TCTAACATACGAACTCAAAATGTAAGGAAAA
** * ** * **
13483 T--T-TAAAGTATAAA-CTTTTACTCTAAGGAAAATGGTAGA-GAAAAAACTTTT-C-T--C
263 TCGTGGCAAG-A-AAAGCTTTT-CT-T--GCAAAA--CCA-ATGCATCAA-TTTTGCATCCC
* * * * ** * * *
13536 ACGAA-ATCAAAACAT-TGATATCGTGTATCCCAA--AAAG-GAGAAT--ATGTTTTGTTTGCCT
1 ATGAAGAT---AACGTGT-TTAT-G-GT-GCCCAATCATTGAAAGAATGGA-GATTT-TTT-CGT
*** *** ** * ** *
13594 A-AT-CATGGAAAGAATGAAGATTATAATAAGAATCCATGTTTGTTTCATCTAACGTACGAACAC
56 AGATCCAT-GTTTG--T-CTCATT-T-A-AAGTGT-AAACTTT-TAT--TCTAA-G---G-----
** ** * * * * *
13657 AAAAT-GTAAGGAAAATCGTGGCAAGAAAAGCTCCTCTTGCAAAACCAATGCATCAATTTTC-TG
101 AAAATGGT-A-G---A-----G-AA-AAAA-CTTTTCTCACGAAATCAAAGCATTAA-TATCGTG
* * * * * * * * **
13720 TATCCCAATGAA-GATAACGTGTTTATG-GTGCCCAATCATTGAAAGAACGGAGATT-TT-TTCG
152 TATCCCAA-AAAGGAGAATGTGTTT-TGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAG
* * * *** *** * *
13781 TATATCCATGTTTGTCTCATTTAA-AGTGTAAACTTTTATTCTAAGG-AAAT--TGGCAGAGAAA
215 -A-ATCCTTGTTTGTTTCATCTAACA-TACGAACTCAAAATGTAAGGAAAATCGTGGCA-AG-AA
* ** * * * * * * *
13842 AAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTAAT-CT
275 AAGCTTTTCTTGCAAAACCAATGCATCAAT-T-TTG-CATCCC
** * * * * * * * *
13884 AAAAAGGAGAATGTGTTT-TGTTTGCCTAATCATGGAAAGAAAT-AAGATTATTAT--AAGAATC
1 ATGAA-GATAACGTGTTTATG-GTGCCCAATCATTGAAAG-AATGGAGATT-TTTTCGTAG-ATC
* * * *** *** * * * * *
13945 CTTGTTTGTTTCATCTAACA-TACGAACTCAAAATATAAGAAAAATCATGGCA-AG-AAAAGCTT
61 CATGTTTGTCTCATTTAA-AGTGTAAACTTTTATTCTAAG-GAAA--ATGGTAGAGAAAAAACTT
* ** * * ** * * ** * * * * *
14007 CTCTTTCAAAACCAATTCATCAATATTGTGCCTCCCAATGAA-GATAACGTGTTTATG-GTGCCC
122 TTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAA-AAAGGAGAATGTGTTT-TGTTTGCCT
* * * ** * * * **
14070 AAACATTGAAAGAATGGAGATT-TT-TTCGTAGATCCATGTTTGTCTCATTTAA-AGTATAAACT
185 AATCATGGAAAGAATGAAGATTATTATAAG-A-ATCCTTGTTTGTTTCATCTAACA-TACGAACT
*** * * * * * * * *
14132 TTTATTTTACA-GAAAATGGTAGG-GA-AAAAGCTTTTCTAATG--AAATCAAAGCTTTAATATC
247 CAAAATGTA-AGGAAAATCGT-GGCAAGAAAAGCTTTTCT--TGCAAAACCAATGCATCAAT-T-
* *
14192 CTGTATCCC
306 TTGCATCCC
* * * ** * *
14201 AAAGAGGAAAACGTGTTT-TGGATGCGTAATCATGGAAAGAATGAAGATTTTTT--TAAGAATCC
1 -ATGAAGATAACGTGTTTATGG-TGCCCAATCATTGAAAGAATGGAGATTTTTTCGT-AG-ATCC
* * * *** *** *** * * * *
14263 ATGCTTATTTCATTTAACA-TACGAACTCAAAAAATGAGGAAAATCATGGCA-AG-GAAAGCTTT
62 ATGTTTGTCTCATTTAA-AGTGTAAACTTTTATTCTAAGG-AAA--ATGGTAGAGAAAAAACTTT
** * * * *** * * * * * * * ** *
14325 TCTTGCAAAACCAACGCGCCAATATTGTGCATCCCAATGAA-GACAACGTCTTCATG-AGGCCCA
123 TCTCACGAAATCAAAGCATTAATATCGTGTATCCCAA-AAAGGAGAATGTGTT-TTGTTTGCCTA
* ** * * **
14388 ATCACT-AAAAGAATTG-AGATT-TT-TTCGTAGATCCATGTTTGTCTCAT-TCAA-AGTATAAA
186 ATCA-TGGAAAGAA-TGAAGATTATTATAAG-A-ATCCTTGTTTGTTTCATCT-AACA-TACGAA
*** * * * ** * * * *
14447 CTTTTATTTTAAGGAAAATGGTAGAG-AA-AAAA-CTTTTCTCACGAAATCAAAGCATTAATATC
245 CTCAAAATGTAAGGAAAATCGT-G-GCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-T-
* *
14509 GTGTATCCC
306 TTGCATCCC
* * * * * * ** * * * *
14518 AACGAGGAGAATGTGTTT-TGTTTGCCTAATCACGGAAAGAATGAAGATTATTAT--AAGAATTC
1 -ATGAAGATAACGTGTTTATG-GTGCCCAATCATTGAAAGAATGGAGATT-TTTTCGTAG-ATCC
* * ** ** *** * * * * *
14580 AAGTTTGTTTCAACTAACA-TACAAACTCAAAATGTAAGGAAAATCATGGCA-AG-AAGAGCTTT
62 ATGTTTGTCTCATTTAA-AGTGTAAACTTTTATTCTAAGG-AAA--ATGGTAGAGAAAAAACTTT
* * * * * * * **** * * ** ** * ** *
14642 TCCTGCA--AAACCAATGCGTCAATGA--ATATAACCTGTTTATGGTG-CCGAATCATTGACTGA
123 T-CT-CACGAAATCAAAGCATTAAT-ATCGTGTATCC-CAAAAAGGAGAATGTGT-TTTGTTTGC
* * * * * * ** ** * ** *
14702 ATGGAGATCATGGCAAGAA-G-AGCTTTTCTTGCAAAACCAAAGCGTCAATGAATATAACCTATT
183 CT--A-ATCATGGAAAGAATGAAG--ATTATT--ATAA--GAA---TCCTTGTTTGT-TTC-ATC
*** * * * * ** ** * * *
14765 TATGGTGCCGAA-TCATTGACTG-AATGG-AGATTTTTTCATAGATCCATG-TTTGTC-T-CATT
234 TAACAT-ACGAACTCA--AAATGTAA-GGAAAATCGTGGCA-AGA--AAAGCTTT-TCTTGCA-A
* * * * **
14824 TA--AA-GTATAAACTTTT-CTTCTA
290 AACCAATGCATCAA-TTTTGCATCCC
* * ** * *** * * * *** * * * ** * **
14846 AGGAAAATAGTTGAGAAAAAACT-TTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAA
1 ATGAAGATA-ACGTG--TTTA-TGGTGCCCAATCATTGAAAGAATGGAGAT--T-T-TTTC----
* ** ** * * ** *
14910 AGGAGAAT--ATGTTTTGTTTGCCTAATCATGGAAAGAATGAA-TATTATAATAA-GAATCCATG
54 -GTAG-ATCCATG-TTTG--T--C---TCATTTAAAGTGTAAACTTTTATTCTAAGGAA--AATG
* *** * * *** ** * * *
14971 TTTGTTTTATCTAACGTACAAACAAAAAATT-TAAGGAAAATCGTGGCAAGAAAAGCTCTTCT-T
107 ---G-------T-A-G-AGAAA-AAACTTTTCTCACG-AAATCAAAGCATTAATA--TCGTGTAT
* * * * * * * * ** * * * **
15034 GCAAAACCAATGCATCAA-CT-TTCTATAT-CCCGATGA-AGATAACGTGTTTATGGTGCCCAAT
155 CCCAAA--AA-GGA-GAATGTGTTTTGTTTGCCTAATCATGGA-AA---G--AATGAAG----AT
* ** * * * ** * *** * *
15095 CATTGA-AAGAATGGAGATTATTTCGTAGATCCATGTTTGTCTCTTTTAAAGTGTAAACTTTTAT
206 TATT-ATAAGAAT---CCTTGTTT-GT---TTCA----TCTAACATACGAACT-CAAA-----A-
* * * * * * *
15159 TCTAAGGAAAATGGTAGAG-AA-AAAA-CTTTTC-T-CATGAAATCAAAGCATTAATATCGTGTA
252 TGTAAGGAAAATCGT-G-GCAAGAAAAGCTTTTCTTGCA--AAACCAATGCATCAAT-T-TTGCA
15219 TCCC
311 TCCC
** * ** * * * * ** *
15223 AAAAAGGAAAATATGTTT-TGTTTGCCTAATCATGGAAAGAATGAAGATTATAAT--AAGAATCC
1 ATGAA-GATAACGTGTTTATG-GTGCCCAATCATTGAAAGAATGGAGATT-TTTTCGTAG-ATCC
* * * *** *** * * * * * *
15285 TTGTTTG-CTTCATCTAACGTACGAACTCAAAATGTGAGGACAATCATGGCA-AG-AAGAGCTTT
62 ATGTTTGTC-TCATTTAAAGTGTAAACTTTTATTCTAAGGA-AA--ATGGTAGAGAAAAAACTTT
** * * * * * ** * *
15347 TCTTGCAAAACCAATGCATGAACTTTC-TGTATCCCGATGAA-GATAACGTGTTTATCG--TGCC
123 TCTCACGAAATCAAAGCATTAA-TATCGTGTATCCC-AAAAAGGAGAATGTGTTT-T-GTTTGCC
* * * * * * * * ***
15408 CAATCATTGAAAGAGTGGAGATTATT-T-CGTAGATCCATGTTTGTCTCATTTAA-AGTGTAAAC
184 TAATCATGGAAAGAATGAAGATTATTATAAG-A-ATCCTTGTTTGTTTCATCTAACA-TACGAAC
*** * * * ** * * * * *
15470 TTTTATTCTAAGGAAAATGGTAGAG-AA-AAAA-CTTTTCTCACGAAATCAAAGCATTAATATCG
246 TCAAAATGTAAGGAAAATCGT-G-GCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-T-T
*
15532 TGTATCCC
307 TGCATCCC
** * ** * * * * ** *
15540 AAAAAAGAAAATATGTTT-TGTTTGCCTAATCATGGAAAGAATGAAGATTATAAT--AAGAATCC
1 -ATGAAGATAACGTGTTTATG-GTGCCCAATCATTGAAAGAATGGAGATT-TTTTCGTAG-ATCC
* * * * *** *** * * * ** *** * * ** *
15602 TTGTTTGTTTCATCTAACGTACGAACTCAAAATGTAAGGACAATCTTTTCTTGCAAAACCAATGC
62 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGA-AA-ATGGTAGAGAAAAAACTTTTC
* * * * * ** ** ** * *
15667 GTCAATG-AAT-ATAACCTGTTTATGGTGCCGAATCATTGACTGAATGGAG-AT-TTTTTCATAG
125 -TC-ACGAAATCA-AAGC-ATTAAT-AT--CGTGT-A-TCCCAAAAAGGAGAATGTGTTT--T-G
* ** * ** * * ** * ** * ** **** *
15728 ATCCATGTTTATCTCATTTAAAGTATAAACTTTTATTCTAAGGAA-AATGGTAGAGAAAAAACTT
178 -T--TTGCCTA-ATCATGGAAAGAATGAA-GATTATTATAA-GAATCCTTGT-TTGTTTCATC-T
** * * * ** ** * * *
15792 TTC-TAATGAAATCAAAGCAT-TAA-TATCAT-GTATCCCAAAGAGGAAAACGTGTT-TTG-AAT
235 AACAT-ACGAACTCAAA--ATGTAAGGAAAATCG--TGGC-AAGA--AAAGC-TTTTCTTGCAAA
* * * * ** * ***
15851 GCGTAAT-CATGGAAAGAATGAGGATTTTT
291 AC-CAATGCAT---CA-ATTTTGCA-TCCC
* * ** ** * *** ***** *
15880 AT-AAGA-ATCCATGCTTGTATCAT--TTAA-CATTCGAACACAAAAAATGAGGAAAATCGTGGC
1 ATGAAGATA-ACGTG-TT-TATGGTGCCCAATCATT-GAA-AGAATGGA-GA-TTTTTTCGTAG-
*** * ** * * * * * ** *
15940 AAGGAAAGCTTT-TCTTACA-AAACCAATGCGTCAATA-TTGTGCATCCCAATGAAGATAACGTC
58 -ATCCATG-TTTGTC-T-CATTTA--AA-GTGT-AA-ACTT-T-TATTCTAAGGAA-A-ATGGTA
*** **** **** * * * * * * *
16002 TTCAAGGGGC-CCAATCACTGAAA-GAATTGATATTTTTTCGTAGATCCAT-GTTTGTCTCATTT
110 GAGAAAAAACTTTTCTCAC-GAAATCAA-AG-CA-----T--TA-AT--ATCGTGTATCCCA--A
* * ** **** * * * * *
16064 AAAGTATAAACT-TTTAT-TTTAAGGAA-AATGGTAGAGAA--AAAACTT-TTCTCACGAAATCA
160 AAAGGAGAATGTGTTT-TGTTTGCCTAATCATGG-AAAGAATGAAGA-TTATTAT-AAG-AATC-
* * * * * * * ***** ** *** * *
16123 AAGCATTAATATCTTGT-ATCCCAA-AGAGGATAATGTGTTTTGTTTGCCTAATCATGGAAAGAA
219 ---C-TT-GTTTGTT-TCAT-CTAACATACGA-ACT-CAAAATGTAAGGAAAATCGTGGCAAGAA
* * * * * ** * *
16186 TGAAG--ATTATT--ATAA-GAATTCAT-GTTTGTTTCATCAAAC
275 --AAGCTTTTCTTGCAAAACCAATGCATCAATT-TTGCATC--CC
* *** * ** * * * * * * * *
16225 AT-ACG--AAC-TCAAAATATAAG-G-AAAATCGTGGCAGGAA--GAGCTTTTCTT-GCAAAACC
1 ATGAAGATAACGT--GTTTAT-GGTGCCCAATCATTGAAAGAATGGAGATTTT-TTCGTAGATCC
* * * * * ** ** * * * * *
16281 A---ATG-CGTCA-ATGAA-TATAACCTGTTTATGGTGCCGTATCAAT-G-AAAGAATGGAGA-T
62 ATGTTTGTC-TCATTTAAAGTGTAAACT-TTTATTCT-AAGGA-AAATGGTAGAGAA--AAAACT
* * * * **
16337 TTT-T-TCGTAGATCCAAGTTTGTCTCATTTAAAGTATAAACTTGTATTCTAAGGAAAATGGTAG
121 TTTCTCACG-AAAT-CAA---AG---CA-TT-AA-TAT---CGTGTA-TCCCA--AAAA--G--G
***** * * * * * * * * **
16400 AGAAAAAAATTT-TCT-CACGAA--AT-CAAAGCATTAATATCGTGTATCCCAAAAAGGAA-AAT
165 AGAATGTGTTTTGTTTGC-CTAATCATGGAAAGAATGAAGA---T-TAT---TATAA-GAATCCT
* * ** ** **
16459 ATGTTTTGTTTGC--CTAATCAT-GGAA---AGAATG-AA-GATTATAAT---AAG-AATCCTTG
221 -TG-TTTGTTT-CATCTAA-CATACGAACTCAAAATGTAAGGAAAATCGTGGCAAGAAAAGC-T-
* * * * * * **
16512 TTTGTTTC--ATCTAACGTA-CGAA-----CA-CAAA
280 TTTCTTGCAAAACCAATGCATC-AATTTTGCATC-CC
* ** * ** * * * * *
16540 ATGTAAGGAAAATCGTG-GCAAGAAAAGCTC-TTC-TTGCAAAACCAATGCATCAATTTTCTGTA
1 ATG-AA-GATAA-CGTGTTTATG--GTGCCCAATCATTG--AAA-GAATGGA--GA-TTT-T-T-
* * * * * *
16602 TCCCAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGA-TTTT-TTCGTAGA
52 T--C---GTAGAT-CCATG-TT-T-GT---C--TCATTTAAAG--TGTAAACTTTTATTC-TA-A
** *** * *** * * ** * * * * *
16665 CCCACGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGGGA--AAAAACTT
99 -GGA-AAATG-GT-AGAGAAA----AAAC--TT-TTCTCACG-AAAT-CAAAGCATTAATATCGT
* * * * * * ** * * ** **
16728 TTCTCACGAAATCAA--AGCAT-TAATATCGTGAAAT-CC-AA-AAAGGAGAATGTGTTTTGTTT
151 GTATC-CCAAA--AAGGAGAATGT-GT-T-TTG-TTTGCCTAATCATGGA-AA---G-AATG-AA
* * * *** * * * ** * * *
16787 GCCTAATCATGGAAAGAAAGAAGATTATTATAAGAATCCTTGCTTGTTTCAT-CTAA--C-ATAC
203 G-ATTATTAT---AAG--A-ATCCTTGTT-T--G--T--TT-CATCTAACATACGAACTCAAAAT
** * * ** ** * * ** * * ***
16848 G-AACTCAAAAT-GT---AAGGAAAATCGTGGCAAG-AAGAGCTTTTCTTGCAAAACCAATGCAT
253 GTAA-GGAAAATCGTGGCAA-GAAAAGCTTTTCTTGCAAAACCAATGCAT-C--AA-TTTTGCAT
*
16907 -CA
312 CCC
* * * * *
16909 ATGAATATAACCTGCTTATGGTGCCAAATCATTGAAAGAATGGAGGTTTTTTCGTAGATCCATGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
* *
16974 TTGTCTCATTTAAAGTATAAACTTTTATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
*
17039 AATCAAAGCATTAATATC-TGGTATCCCAAAGAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
131 AATCAAAGCATTAATATCGT-GTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * *
17103 AGAATGAAGATTATTATAAGAATTCATGTTTGTTTCATCAAACATACGAACTCAAAATTTAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * *
17168 AAATCGTGGCAGGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* ** * *
17215 AT----ATAACCTGTTTATGGTGCCGTATCAATGAAAGAATGGAGATTTTTTTGTAGATCCATGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
* * *
17276 TTGTCTCATTTAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAAATTTTCTCACGA
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
* *
17341 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAAAATATGTTTTGTTTGCCTAATCATGGAAA
131 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA
* * * * *
17406 GAATGAAGATTATAATAAGAATCCTTGTTTGTTTCATCTAACGTGCAAACACAAAATGTAAGGAA
196 GAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAA
* * *
17471 AATCGTGGCAAGAAAAGCTCTTCTTGCGAAACCAATGCATCAACTTTCTGTATCCC
261 AATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TTT-TGCATCCC
* * * *
17527 GATGAAGATATCGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTATTTCATAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* *
17592 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGGGAAAAAACTTTTCTCATG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
*
17657 AAATCAAAGCATTAATATCGTGAAAT-CCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
130 AAATCAAAGCATTAATATCGTG-TATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
* *
17721 AAGAAAGAAGATTATTATAAGAATCCTTGCTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
194 AAGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
*
17786 AAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCATCAA---TG-A----
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * * *
17834 AT----ATAACCTGCTTATGGTGCCAAATCATTGAAAGAATGGAGGTTTTTTCGTAGATCCATGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
* *
17895 TTGTCTCATTTAAAGTATAAACTTTTATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
* *
17960 AATCAAAGCATTAATATCTTGTATCCCAAAGAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA
131 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA
* * * **
18025 GAATGAAGATTATTATAAGAATTCATGTTTGTTTCATCAAACGGACGAACTCAAAATGTAAGGAA
196 GAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAA
* * * *
18090 AATCGTGGCAGGAAGAGCTTTTCTTGCAAAACCAAAGCGTCAA---TG-A----
261 AATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * ** *
18136 AT----ATAACCTGTTTATGGTTCCGTATCAATGAAAGAATGGAGATTTTTTCGTAGATCCATGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
*
18197 TTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAA-GAGTAGAGAAAAAACTTTTCTCACG
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATG-GTAGAGAAAAAACTTTTCTCACG
* * * *
18261 AAATCAAAGCATTGATATCGTGTATCGCAAAAAGGAGAATATGTTTTTTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * * * * *
18326 AGAATGAATATTATAATAAGAATCCATGTTTGTTTTATCTAACGTACAAACACAAAATGTAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * *
18391 AAATCGTGGTAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACTTTCTGTATCCC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TTT-TGCATCCC
* * *
18448 GATGAAGATAACGTGTTTATGGTGCCGAATCATTGAAAGAGTGGAGATTATTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
18513 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
18578 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * *
18643 AGAATGAAGATTATTATAAGAAACGTTGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * * * * * *
18708 AAATCATGGCAGGAAAAGCTTTTCTTTCAAAACTAATTCATCAGTATTGTGCCTCCC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCA--ATTTTGCATCCC
* * *
18765 AATGAAGATAACGTGTTTATGGTGCCCAAACTTTGAAAGAATGGAGA-CTTTTCTGTAGATCCAT
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTC-GTAGATCCAT
* * *
18829 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTAAT
64 GTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAC
* * * * ** *
18894 GAAATCAAAGCATTAATATCTTGTATCCCAAAGAGGAAAACGTGTTTTGGATGCTTAATCATGGA
129 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
* * * * * * * * ** *
18959 AAGAATGAGGATTTTTATAAGAATCCATGCTTGTATCATTTAACATATGAACACAAAAAATGAGG
194 AAGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* * *
19024 AAAATCGTGGCAAGGAAAGCTTTTCTTACAAAACCAATGCGTCAATATTGTGCATCCC
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-TT-TGCATCCC
* * * * * * *
19082 AATGAAGATAACGTCTTCATGGGGCCCAATCACTAAAAGAATTGAGATTTTTTCATAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* *
19147 TTTGTCTCATTTAAAGTATAAACTTTTATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* *
19212 AAATCAAAGCATTAATATCTTGTATCCCAAAGAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * *
19277 AGAATGAATATTATTATAAGAATTCATGTTTGTTTCATATAACATACGAACTCAAAATGTAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* *
19342 AAATCATGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCATCAA---TG-A----
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * * *
19389 AT----ATAACCTGTTTATGGTGCCAAATCATCGAAAGAATGGAGATTTTTTCGTAGATCCAAGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
* * * * * *
19450 TTGTCACATTTAAAGTATAAACTTTTATTTTACGGAAAATGGTAGAGAAAAAACTTTTCTAATGA
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
* * * * * ** ** *
19515 AATCAAAGC-TTGAATATCCTGTAACCCAAAGAGGAAAACGTGTTTTGGATGTGTAATCACGGAA
131 AATCAAAGCATT-AATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * *
19579 ACAATGAAGATTATAATAAGAATCCTTGTTTGTTTCATCTAACGTACGAACCCAAAATGTAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* *
19644 AAATCGTGGCAAGAAAAGCTCTTCTTGCAAAACCAACGCATCAATTTT-CTATATCCC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGC---ATCCC
* * * * * * *
19701 AATGAAGATAGCATGTTTATGGTGCCGAATTATTGAAAGATTGGAGATTATTTCGTAGATTCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
19766 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
*
19831 AAATCAAAGCATTAATATCATGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * *
19896 AGAATGAAGATTATTATAAGAAACGTTGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * * * * * *
19961 AAATCATGGCAGGAAAAGCTTTTCTTTCAAAGCCAATTCATCAGTATTGTGCCTCCC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCA--ATTTTGCATCCC
* * *
20018 AATGAAGATAACGTGTTTATGGTGCCCAAACTTTGAAAGAATGGAGA-CTTTTCTGTAGATCCAT
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTC-GTAGATCCAT
* * *
20082 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTAAT
64 GTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAC
* * * * * * *
20147 GAAATCAAAGCATTAATATCTTGTATCCCAAAGAGGAAAACGTGATTTGGTTGCGTAATCATGGA
129 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
* * * * * * * * ** *
20212 AAGAATGAGGATTTTTATAAGAATCCATGCTTGTATCATTTAACATTCGAACACAAAAAATGAGG
194 AAGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* * * *
20277 AAAATTGTGGCAAGGAAAGCTTTTCTTACAAAACCAATGCGTCAATATTGTGCATCCC
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-TT-TGCATCCC
* * * * * * *
20335 AATGAAGATAACGTCTTCAAGGGGCCCAATCACTGAAAGAATTGATATTTTTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* *
20400 TTTGTCTCATTTAAAGTATAAACTTTTATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* *
20465 AAATCAAAGCATTAATATCTTGTATCCCAAAGAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * *
20530 AGAATGAAGATTATTATAAGAATTCATGTTTGTTTCATCAAACATACGAACTCAAAATGTAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * *
20595 AAATCGTGGCAGGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* ** *
20642 AT----ATAACCTGTTTATGGTGCCGTATCAATGAAAGAATGGAGATTTTTTCGTAGATCCATGT
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
* * *
20703 TTGTCTCATTTAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAAATTTTCTCACGA
66 TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
* * *
20768 AATCAAAGCATTAATACCGTGTATCCCAAAAAGGAAAATATGTTTTGTTTGCCTAATCATGGAAA
131 AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA
* * * *
20833 GAATGAAGATTATAATAAGAATCCTTGTTTGTTTCATCTAACGTACAAACACAAAATGTAAGGAA
196 GAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAA
* *
20898 AATCGTGGCAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACTTTCTGTATCCC
261 AATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TTT-TGCATCCC
* *
20954 GATGAAGATAACGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTATTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
*
21019 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGGGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* *
21084 AAATCAAAGCATTAATATCATGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGGA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * *
21149 AGAATGAAGATTATTATAAGAAACGTTGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * * * * * *
21214 AAATCATGGCAGGAAAAGCTTTTCTTTCAAAGCCAATTCATCAGTATTGTGCCTCCC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCA--ATTTTGCATCCC
* * *
21271 AATGAAGATAACGTGTTTATGGTGCCCAAACTTTGAAAGAATGGAGA-CTTTTCTGTAGATCCAT
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTC-GTAGATCCAT
* * *
21335 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTAAT
64 GTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAC
* * * * * * * *
21400 GAAATCAAAGCATTAATATCTTGTATCCCAAAGAGGAAAACGTGATTTGGTTGCGTAATCATGGG
129 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
* * * * * * * * ** *
21465 AAGAATGAGGATTTTTATAAGAATCCATGCTTGTATCATTTAACATTCGAACACAAAAAATGAGG
194 AAGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* * * *
21530 AAAATTGTGGCAAGGAAAGCTTTTCTTACAAAACCAATGCGTCAATATTGTGCATCCC
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-TT-TGCATCCC
* * * * * * *
21588 AATGAAGATAACGTCTTCAAGGGGCCCAATCACTGAAAGAATTGATATTTTTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* *
21653 TTTGTCTCATTTAAAGTATAAACTTTTATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* *
21718 AAATCAAAGCATTAATATCTTGTATCCCAAAGAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * *
21783 AGAATGAAGATTATTATAAGAATTCATGTTTGTTTCATCAAACATACGAACTCAAAATGTAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * *
21848 AAATCGTGGCAGGAAGAGCTTTTCTTGCAAAACCAATGCGTCAA---TG-A----
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
* * *
21895 AT----ATAACCTGTTTATGGTG-CCAATTCATCGAAAGAATGGAGATTTTTTCGTAGATCAATG
1 ATGAAGATAACGTGTTTATGGTGCCCAA-TCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* * * * * *
21955 TTTGTCTCGTTTAAAGTATAAACTTGTAATCTCAGGAAAATGGTAGAGAAAAAAGTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* *
22020 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTCTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * *
22085 AGAATGAAGATTATAATAAGAATCCTTGTTTGTTTCATCTAACGTACGAACACAAAATGTAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * *
22150 AAATCGTGGCAAGAAAAGCTCTTCTTGCAAAACCAATGCATCGATTTTCTGTATCCCAATC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATC-AATTT-TGCAT-CC---C
* * * * *
22211 ATTGAAAGAATGGA-GAT-TTTTTCGTAGACCAATGTTTGTCTCATTTAAAG--TGTGA-ACTTT
1 A-TG-AAG-AT-AACG-TGTTTATGGT-GCCCAA--------TCATTGAAAGAATG-GAGA-TTT
** * * ** ** * *** **** * * *
22271 TATTC-TAAGGA-AAATGGTAG--AGA-AAAAACTGTTCTCACGAAATCAAAGCATTAATATCGT
50 T-TTCGT-A-GATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGA--AA-AT-G-
* * * * ** ** ** * ** ** * *
22331 GTATCCAAAAAAGGAGAATGTTTTTTGTTTGCCTAATCATGGAAAGAATAAAGAT-TAT---TAT
107 GTA---GAGAAA--A-AA---CTTTT-CTCACGAAATCAAAGCATTAATATCG-TGTATCCCAAA
* *** * * * ** *
22392 AAGAATCCT-TGTTTT-TTT-CATCTAA-CATACGAACTCAAAATATAAGGAAAATCATGGCAAG
161 AAGGAGAATGTGTTTTGTTTGC--CTAATCAT-GGAA---AGAAT-GAA-GATTATTAT---AAG
** * * * * * ** *
22453 AAAAGC-T-TTTCTTTCAAAACCAATTCGTCAATACTATGCCTCCCAATG-AA-GATAA-CGTGT
215 -AATCCTTGTTTGTTTC--ATCTAA-----C-ATACGA--ACTCAAAATGTAAGGAAAATCGTG-
** * * * **** ** * **
22513 TTATGGTGCCCAAA-CATTGAAAG-AATGGAGACTTTTCTCTTG-ATCCATGTTTGTC-TCTT
268 GCA---AG--AAAAGCTTTTCTTGCAA---A-AC----C-AATGCATCAAT-TTTG-CATCCC
* * ** **** * * * * * ** * *
22572 TTAAAGTATAAAC-T-TTTATTCTAAGGAA-AATGGTAGAGAA--AAAACTTTTCACTTGAAATC
1 ATGAAG-AT-AACGTGTTTATGGTGCCCAATCATTG-AAAGAATGGAGA-TTTTTTCGT-AGATC
* * * * ** * *
22632 AAAGCATTAATATCGTGTATCCCAAAGATG-AGAATGTGTTTTGCTTGCCTAACCATGGAAAGAA
61 CATG--TT--TGTC-T-CAT-TTAAAG-TGTA-AA---CTTTT-ATT--CT-A--A-GG-AA-AA
* * * * * * * *
22696 T-GAAGAATATTATAAGAATCCATGTTTGTTTCATCTAACATACGAA-C-TCAA-A--ATGTA-A
105 TGGTAG-AGA--A-AA-AA--C---TTT-TCTCA-CGAA-AT-CAAAGCATTAATATCGTGTATC
** * * ** * * * *
22754 GGAAAATCATGGCAGGAA-GAGCTTTT-CTTGCAAAACCAATGCGTTAATGAATATAACCTGTTT
156 CCAAAA--A-GG-A-GAATGTG-TTTTGTTTGCCTAATC-ATG-G--AAAGAAT-GAA---GATT
** ** ** ** ** * **
22817 ATGGTGCCGAATCAGCAAAAGAATGGAGATTTTTTCGTAGATCA-ATGTTTGTCTCATTTAAAGT
207 ATTAT-AAGAATC--C--TTG--T-TTG-TTTCATC-TA-A-CATACG---AACTCA---AAA-T
* * * * ** * * ** *
22881 ATAAACTTG-TAATC-TCAGGAAAATGGTAGAGAAAAAAG-TTTTCTCACGAAATCAAAACATTA
253 GT-AA--GGAAAATCGT--GG-------CA-AG--AAAAGCTTTTCTTGCAAAACCAATGCATCA
* *
22943 ATATCGTGTA-CCC
303 AT-T-TTGCATCCC
** * ** ** * * * ** *
22956 AAAAAGGAGAATATGTTT-TCTTTGCCTAATCATGGAAAGAATGAAGATTATAAT--AAGAATCC
1 ATGAA-GATAACGTGTTTAT-GGTGCCCAATCATTGAAAGAATGGAGATT-TTTTCGTAG-ATCC
* * * * *** **** * * * *
23018 TTGTTTGTTTCATCTAACGTACGAACACAAAATGTAAGGAAAATCGTGGTA-AG-AAAAGCTCTT
62 ATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAA---TGGTAGAGAAAAAACTTTT
** * * * * * * * * ** * *
23081 CTTGCAAAACCAATGCATCGATTTTC-TGTATCCCAATGAA-GATAACATGTTTATG-GTGCCCA
124 CTCACGAAATCAAAGCAT-TAATATCGTGTATCCCAA-AAAGGAGAATGTGTTT-TGTTTGCCTA
** * ** * * * * ** *
23143 ATCATTTAAAGAATGGAGATT-TT-TTCGTAGACCCATGTTTGTCTCATTTAA-AGTGTGAACTT
186 ATCATGGAAAGAATGAAGATTATTATAAG-A-ATCCTTGTTTGTTTCATCTAACA-TACGAACTC
** * * * ** * * * * *
23205 TTATTCTAAGGAAAATGGTAGAG-AA-AAAA-CTTTTCTCACGAAATCAAAGCATTAATATCGTG
248 AAAATGTAAGGAAAATCGT-G-GCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-T-TTG
*
23267 TATCCC
309 CATCCC
** * * * * * * * * *
23273 AAAAAGAAGAATGT-TTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTAT--AAGAATCC
1 ATGAAG-ATAACGTGTTTATG-GTGCCCAATCATTGAAAGAATGGAGATT-TTTTCGTAG-ATCC
* * * *** *** * * * *
23335 TTGTTTGTTTCATCTAACA-TACGAACTCAAAATATAAGGAAAATCATGGCA-AG-AAAAGCTTT
62 ATGTTTGTCTCATTTAA-AGTGTAAACTTTTATTCTAAGG-AAA--ATGGTAGAGAAAAAACTTT
** * * ** * * * ** * * * * *
23397 TCTTTCAAAACCAATTCGTCAATA-CTATGCCTCCCAATGAA-GATAACGTGTTTATG-GTGCCC
123 TCTCACGAAATCAAAGCATTAATATC-GTGTATCCCAA-AAAGGAGAATGTGTTT-TGTTTGCCT
* * * * ** * * * * **
23459 AAACATTGAAAGAATGGAGACTT-TTCTGTTG-ATCCATGTTTGTCTCTTTTAA-AGTATAAACT
185 AATCATGGAAAGAATGAAGA-TTATTAT-AAGAATCCTTGTTTGTTTCATCTAACA-TACGAACT
*** * * * * * *
23521 TTTATTCTAAGGAAAATGGTAGAG-AA-AAAA-CTTTTCTAATG--AAATCAAAGCATTAATATC
247 CAAAATGTAAGGAAAATCGT-G-GCAAGAAAAGCTTTTCT--TGCAAAACCAATGCATCAAT-T-
*
23581 TTGTATCCC
306 TTGCATCCC
* * * ** * *
23590 AAAGAGGAAAACGTGTTT-TGGATGCTTAATCATGGAAAGAAT-GAGGATTTTTAT--AAGAATC
1 -ATGAAGATAACGTGTTTATGG-TGCCCAATCATTGAAAGAATGGA-GATTTTT-TCGTAG-ATC
* * * * **** *** * * *
23651 CATGCTTGTTTCATTTAACA-TATGAACACAAAAAATGAGGAAAATCGT-G-GCAAGGAAAGCTT
61 CATGTTTGTCTCATTTAA-AGTGTAAACTTTTATTCTAAGGAAAATGGTAGAG-AA--AAAACTT
* * * * * * * * * * * * * ** *
23713 TTCTTACAAAACCAATGCGTCAATATTGTGCATCCCAATGAA-GATAACGTCTTCATG-GGGCCC
122 TTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAA-AAAGGAGAATGTGTT-TTGTTTGCCT
* * * * * **
23776 AATCACT-AAAAGAATTG-AGATT-TTTTCATAG-ATCCATGTTTGTCTCATTTAA-AGTATAAA
185 AATCA-TGGAAAGAA-TGAAGATTATTAT-A-AGAATCCTTGTTTGTTTCATCTAACA-TACGAA
*** * * * ** * * * *
23836 CTTTTATTTTAAGGAAAATGGTAGAG-AA-AAAA-CTTTTCTCACGAAATCAAAGCATTAATATC
245 CTCAAAATGTAAGGAAAATCGT-G-GCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-T-
*
23898 TTGTATCCC
306 TTGCATCCC
* * * * * * * * * *
23907 AAAGAGGAGAATGTGTTT-TGTTTGCCTAATCATGGAAAGAAT-GA-ATATTATT-ATAAGAATT
1 -ATGAAGATAACGTGTTTATG-GTGCCCAATCATTGAAAGAATGGAGAT-TTTTTCGT-AG-ATC
* * * *** *** * * * * *
23968 CATGTTTGTTTCATCTAAAATACGAACTCAAAATGTAAGGAAAATCATGGCA-AG-AAGAGCTTT
61 CATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGG-AAA--ATGGTAGAGAAAAAACTTT
** * * * * * * * *
24031 TCTTGCAAAACCAATGCATCAATGAATATAACCTGTTTATGGTGCCAAATCATCGAAAGAATGGA
123 TCTCACGAAATCAAAGCAT---T-AATAT---C-GTGTA---TCCCAAA--A-AG-GAGAAT-GT
* * * ** * * **
24096 GATTT-TTT-CATAGATC----CAAGTTTGTCACA-T-TTA-AAGTATAAACTT-TTAT-TTT-A
172 GTTTTGTTTGCCTA-ATCATGGAAAGAATG-AAGATTATTATAAG-A-ATCCTTGTT-TGTTTCA
* * * *** * * *** ** * * * * ****
24149 -CGGAAAAT-GGTAGAGAAAAAACTTTTCTAATG-AAATCAAAGCTTGAATATCCTGTAACCCAA
232 TC-TAACATACG-A-ACTCAAAA----TGTAAGGAAAATCGTGGCAAGAAAAGCTTTTCTTGCAA
** ** * * *
24211 AGAGTAAAACGT--GTTTTGGAT---
290 A-ACCAATGCATCAATTTTGCATCCC
* * * ** *** * * **
24232 GTGTA-ATCACG-G-AAACAATG---AA-GATT-ATAATAA--GA-ATCCTTGTTT-GTTTCATC
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGA-AAGAATGGAGAT--TT-TTTCG-TAGATC
* * ** * * * * ** ** ** ***
24285 TAACGTACGAACCCA---AAATGTAAGGAAAATCGT-GGC-AA-GAAAAGCTCTTCTTGCAAAAC
61 -CATGTTTG-TCTCATTTAAA-GT--GTAAACTTTTATTCTAAGGAAAA--TGGTAGAG-AAAA-
*** ** * * * * **
24344 CAACGCATCAAAT-ATCCCAATGAAGATAGCATGT-TTATGGTGCCGAATCATTGAAAGAATGGA
117 -AACTTTTC---TCA-CGAAAT-CA-A-AGCAT-TAATATCGT---GTATC--CCAAA-AA-GGA
** ** ** * * ** * * *
24407 G-AT-T-TTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTGTATTCTCAGGAAAATG
166 GAATGTGTTTT-GT---T---TGCCT-AATCATGGAAAGAATGAAGAT-TATTAT-A--AGAATC
* * *** * * ** * *
24469 GTAGCGAAAAAAGTTT--TCTCACA-A--AA-TC-AAA-G-CATTAATATCGTGTATCCCAAAAA
219 CT--TG---TTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCGTG----GC---AA
* ** * * ** *** ***
24525 GGAGAATATG-TTTTGTTTGCCTAATC-ATGGAAAGAATGAAG-ATTAGA
272 -GA-AA-A-GCTTTT-CTTGCAAAACCAAT-GCATCAATTTTGCA-TCCC
* * * * * * * * * ** **
24572 AT-AAGAGT-CCTTG-TT-TGTTTCATCTAA-CGTACGAACACAAAATGTAAGGAAAATCGTGGC
1 ATGAAGA-TAACGTGTTTATGGTGC--CCAATCAT-TG-A-A-AGAA--T--GG-AGATTTTTTC
* * * * ** *** * ** ** *
24632 AAGAAAAGCCCT-TCTTG-CAAAACCAATGCATCAATTTTCTGTATCCCAATCAA-GATAACATG
54 --GTAGATCCATGT-TTGTCTCATTTAAAGTGT-AAACTT-T-TAT-TC--T-AAGGA-AA-ATG
* * *** * * ** * * **** * * * *
24694 TTTATGGTGCCCAATC-ATT-GAAAG-AATGGAGATTTTTTCGTAGACCCAT-GTTTGTCTCATT
107 -GTA--GAGAAAAAACTTTTCTCACGAAAT-CA-A-AGCAT--TA-A--TATCGTGTATCCCA--
* *** ** * * * * *
24755 TAAAGTTCAAACTTTTATTAAACTTT---TATTCTAGGGAAAGTGGTAGA-GAAAAAACTTATCT
159 AAAAGGAGAATGTGTT-TT---GTTTGCCTAATC-ATGGAAA---G-A-ATG--AAGA-TTAT-T
* * * * * * * * ***** ** ***
24816 GATGA-AATCAAAGCATTAATATCGTGT-ATCCCAA-AAAGGAGAATGTGTTTTGTTTGCCTAAT
210 -ATAAGAATC----C-TT-GT-TTGTTTCAT-CTAACATACGA-ACT-CAAAATGTAAGGAAAAT
* ** * * * * ** *
24878 CATGAAAAGAATGAAGATTATT-AT--AAGAATCCATGTTTGTTTCATCTAACATACGAACTCAA
264 CGTGGCAAGAA--AAGCTT-TTCTTGCAA-AA-CCA---ATG---CATC-AA-TTTTGCA-TC--
*
24940 AAC
313 -CC
* ** * ** *** * *
24943 AT-AAGGAAAATCGTG-GCAAGAAAAG-CTTTTC-TTACAAAACCAATGCGTCA-ATTCTCTGTA
1 ATGAA-GATAA-CGTGTTTATG--GTGCCCAATCATT--GAAA-GAATG-G--AGATT-T-T-T-
* * * * *
25003 TCCCAATGAAGATAACATGTTTATTGTGCCCAATCATTGAAAGAATGGAGA-TTTT-TTCGTGAT
52 T--C---GTAGAT-CCATG--T-TTGT---C--TCATTTAAAG--TGTAAACTTTTATTC-T-A-
*** * * * * * * *** ** * *
25066 CCATGTTTGTCTCAT-TTACAGTAGAAACTTTTATTCTAAGGAAAATGGTAG-AGAAAAAAC-T-
98 --A-G---G-AAAATGGTAGAGAAAAAAC--TT-TTCTCACG-AAATCAAAGCATTAATATCGTG
* * * * * * * * * * * ** **
25127 TTTCACATGAAATCA-AAGCAT-TAATATCGTGTAT-CCCAA-AAAGGAGATTGTGTTTTGTTTG
152 TATCCCA--AAA--AGGAGAATGT-GT-T-TTGTTTGCCTAATCATGGA-A---AG-AATG-AAG
* * * *** * * * * * * * *
25188 CCTAATCATGGAAAGAAAGAAGATTATTATAAGAATTCATGTTTA-TTTC-ATCT-AACATACG-
204 -ATTATTAT---AAG--A-ATCCTTGTT-T--G-TTTCAT-CTAACATACGAACTCAA-A-ATGT
** * ** ** * * ** * * *** *
25249 AACTCAAAAT-GT---AAGGAAAATCGTGGT-AAG-AAGAGCTTTTCTTGCAAAACCAATGCGT-
255 AA-GGAAAATCGTGGCAA-GAAAAGC-TTTTCTTGCAAAACCAATGCAT-C--AA-TTTTGCATC
*
25307 CA
313 CC
* * * *
25309 ATGAATATAACTTGTTTATGGTGCCGAATCATT-AACTGAATGGAGATTTTTTCGTAGATCCATG
1 ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAA-AGAATGGAGATTTTTTCGTAGATCCATG
* * *
25373 TTTGTCTCATTTAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAACCTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* *
25438 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCCTGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * * * * *
25503 AGAATGAATATTATAATAAGAATCCATGTTTGTTTTATCTAA-AGCACAAACACAAAATGTAAGG
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACA-TACGAACTCAAAATGTAAGG
* * *
25567 AAAATCTTGGCAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACTTTCTGTATCCC
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TTT-TGCATCCC
*
25625 GATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* * * *
25690 TTTGTTTCATTTAAAGTATAAACTTTTATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCTCATG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
*
25755 AAATCAAAGCATTAAAATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * *
25820 AGAATGAAGATTATTATAAGAATTCATGATTGTTTCATCTAACATACGAACTCAAAATATAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * * * *
25885 AAATCATGGCTAGAAGAGCTTTTCTTGCAAAACTAATGCATCAATTTTGTGTATCCC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TTT-TGCATCCC
* * * *
25942 AATGAGGATAACGTGTTTATGGTGCCCAATCATAGAAAGAATGGTGATTTTTTCATAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* * *
26007 TTTGTCTCATTTAAAGTATAAACTCTTACTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
** * *
26072 AAATCAAAGCATTAATATCGTGCCTCCCAAAAAGGAGAATGTGTTTTGGTTGCCTAATCGT-GAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * * * * * *
26136 AGGTATGAAGATTTTTATAAGAATCCATGTTTGTTTCATTTAAAATTCGAACTCAAATTATAAGG
195 A-GAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* * **
26201 AAAATTGTGGCAAGAAAAGCTTTTCTTGCATAACCAATGCGCCAATATTGTGCATCCC
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-TT-TGCATCCC
* * * * * * * *
26259 AATGAAGATAAAGTGTTCATGGGGCCCAATCACTGAAAGAATTGAGAGTTTTTCATAGATCAATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* * * *
26324 TTTGTCTCATTTAAAGTTTAAACTTTTAATCCAAGGAAAATGGTAGAGAAAAAACTTTTCTCATG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* * ** * * *
26389 AAATCAAAGCATTAATAACATGTATCCCAAAAAGGAGAATGTGTTTTGGCTACCTAATCGTGAAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG-GA
* * * * * ** *
26454 AAGTATGAAGATTTTTATAAGAATCCATGTTTGTTTCATTTAAC-TCATGAACTCAATTTATAAG
194 AAGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACAT-ACGAACTCAAAATGTAAG
* * *
26518 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCATAACCAATGCACCAATATTGTGCCTCCC
258 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-TT-TGCATCCC
* * * * * * *
26577 AATGAAGATAATGTGTTCATGGGGCCCAATCACTGAAAGAATTGAGATTTTATCATAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* * * * *
26642 TTTGTCTCATTTAAAGTATAAATTTTTATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCCCACT
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* *
26707 AAATCAAAGCATTAATAACGTGTATCCCACAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* ** *
26772 AGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAATTTATAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * * *
26837 AAATCATGGCGAGAAAAGCTTTTCTTGCAAAACCAATGCACCAATATTGTGCCTCCC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-TT-TGCATCCC
* * * *
26894 GATGAAGATAACGTGTTCATGAG-GCCCAATCACTGAAAGAATTGAGATTTTATCGTAGATCCAT
1 -ATGAAGATAACGTGTTTATG-GTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* * * *
26958 GTTTGTCTCATTTAAAGTATAAAATTTGATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAC
64 GTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAC
* * *
27023 GAAATCAAAGCATTAATATCGTGTATCCCACAAAGGAGAATATGTTTTGTTTGCCTAGTCATGGA
129 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
* *
27088 AAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGG
194 AAGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* * * * * *
27153 AAAATTGTGGCAAGAAAAGCTTTTCTTACAAAGCTAATGCGTCAATTTTCTGTATCCC
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TTT-TGCATCCC
*
27211 AATGAAGATAACGTGTTTATGGTGCCCAATCAATT-AAAGAATGGAGATTTTTTTGTAGATCCAT
1 -ATGAAGATAACGTGTTTATGGTGCCCAATC-ATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* * * *
27275 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGCAGAGAAAAAACTTTTCACAT
64 GTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAC
* **
27340 GAAATCAAAGCATTAATATCGTGTATCCTAAAAAGGAGAATGTGTTTTGTTTGCCTAATCCCGGA
129 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
* * * *
27405 AAGAATGAAGATTGTTATAAGAATCCATGTTTGTTTCATCTAATATACGAACTCAAAATATAAGG
194 AAGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* * * * *
27470 AAAATCATTGCAAGAAGAGCTTTTCTTGCAAAACCAATACGTCAATTTTGTGCATCCC
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TTT-TGCATCCC
* *
27528 AATGAAGATAACGTATTTATGGTGCCCAATCATTGAAAGAATGGTGA-TTTTTCGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* ** * * * * * *
27592 TTTGTCTCATTTAAAGTATAAAC-TTTATTCTGCGGAAGACGATTGAGAAAAAAACTTTTCTTAT
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAG-AAAAAACTTTTCTCAC
* * ** *
27656 GAAATAAAAGCATTAATA-CTGTGTAT-CCAAATAAGGAGAACGCATTTTGGTTGCCTAATCATG
129 GAAATCAAAGCATTAATATC-GTGTATCCCAAA-AAGGAGAATGTGTTTTGTTTGCCTAATCATG
* * * * * * *
27719 GAAAGAATGAGGATTATTATAAGAAT-CTAGGCTTGTTTCATTTAACATACGAACTTAAAATATG
192 GAAAGAATGAAGATTATTATAAGAATCCT-TGTTTGTTTCATCTAACATACGAACTCAAAATGTA
* * * *
27783 AGGAAAATCGTGGCAAGGAAAGCTTTTCTTGCAAAACCAATTCGTGAATATTGTGCATCCC
256 AGGAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-TT-TGCATCCC
** * * * * *
27844 AAACAAGATAATGTGTTTATGGGGCCCAATCACTGAAAGAGTGGAGATTTTTTCGTAGATCAATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* * * * * *
27909 TTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAACGATTGAGAAAAAAACTTTTCTTAT
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAG-AAAAAACTTTTCTCAC
* * * ***
27974 GAAATCAAAGCATTAATATCGTGTAT-CCAAATAAGGAGAACGCGCTTTGGCCGCCTAATCATGG
129 GAAATCAAAGCATTAATATCGTGTATCCCAAA-AAGGAGAATGTGTTTTGTTTGCCTAATCATGG
* * * * * * * *
28038 AAAGAATAAAGATTATTGTAAGAATCCATGCTTGTTTCGTTTAACATACGAACTCAAAATATGAG
193 AAAGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAG
* * * * * *
28103 GACAATCATGGAAAGGAAAGCTTTTCTTGCAAAACCAATGCGTCAACATTGTGCATCCC
258 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATC-A-ATTTTGCATCCC
* * * * * *
28162 AATGAAGATAACATGTTTATGGGGCCCACTCACTGAAAGAAAGGAGATTTTTTCGTAGATCCATA
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* * * *
28227 TTTGTCTCATTTAAAGTATAAACTTTTTTTC-AATGGAAAATGGCATG-GAAACAACTTTTCTCA
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAA-GGAAAATGGTA-GAGAAAAAACTTTTCTCA
* * * * * *
28290 TGAAATCAAAGCATTAATAACGTCTATCCCAAAAAGGAGAATGTGTTTTGGTTGCCTAGTCATGA
128 CGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGG
* * * * * * * * ** *
28355 AAAGTATGAAGATTTTTATAAGAATCCATGTTTGCTTCATTTAAAACACGAACACAATTTATAAG
193 AAAGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAG
* *
28420 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCATAACCGATACGC-T-AATATTGTGCATCCC
258 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACC-A-ATGCATCAAT-TT-TGCATCCC
* * * * ** * *
28479 AATGAAGATAATGTGTTCATGGGGCCCAATCACTGAAAGAATTAAGATTTTTTCATAGATCCAAG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* * * * * *
28544 TTTGTCTCATTTAAAGTATAAACTTTTATTTTAAGGAAAGTGGTAGAGAAAACACTTTTCTTATG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* ** * * * *
28609 AAATCAAAGCATTAATACCGTGTAT-CCAAATAAGGAGAGCGCGCTTTGGTTGCCTAATCATGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAA-AAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
* * * * * * ** * *
28673 AAGTATGAAGATTTTTATAAGAATCCATGTTTGTTTCATTTAACACATGAACTCAATTTATAGGG
194 AAGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* * **
28738 AAAATCGTGGCGAGAAAAGCTTTTCTTGCATAACCAATGCGCCAATATTGTGCATCCC
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-TT-TGCATCCC
* * * * * * *
28796 AATGAAGATAAAGTGTTCATGGGGCCCAATCACTGAAAGAATTGAGATTTTTTCATAGATCAATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* * * *
28861 TTTGTCTCATTTAAAGTATAAACTTTTAATCTAAGGAAAATGGTAGAGAAAAAACTTGTCTCATG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* * ** * *
28926 AAATCAAAGCATTAATAACATGTATCCCAAAAAGGAGAATGTGTTTTGGCTGCCTAATCGTGAAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * * * ** *
28991 AGTACGAAGATTTTTATAAGAATCCATGTTTGTTTCATTTAAC-TCACGAACTCAATTTATAAGG
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACAT-ACGAACTCAAAATGTAAGG
** * *
29055 AAAATCGTGGCAAGAAAAGCTTTTCTTGCGTAACCAATGCACCAATATTGTGCCTCCC
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-TT-TGCATCCC
* * * * *
29113 AATGAAGATAACGTGTTCATGGGGCCCAATCACTGAAAGAATTGAGATTTTTTTGTAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* * * * * *
29178 TTTGTCTCATTTAAAGTATAAAATTTTATTTTAAGGAAAATGGTAGACAAAAAATTTTTCTCACA
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
** * *
29243 AAATCAGGGCATTAATATCGTGTATCCCAAAAAGGAGAAGGTGTTTTGTTTGCCTAATCGTGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * *
29308 AGAATGAAGATTATTATAAGCATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * *
29373 AAATCGTGGCAAGAAAAGCTTTTCTTACAAAACCAATGCGTCAATTTTCTGTATCCC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TTT-TGCATCCC
* * *
29430 AATGAAGATAACATGTTTATTGTGCCCAATCATTGAAAGAATGGAGATTTTTTCAT-GATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* * * * *
29494 TTTGTCTCATTTACAGTATAAACTTTTATTCTAAGGAAAGTGGTACAGAAAAAACTTTTCTCATG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* *
29559 AAATCAAAGCATTAATATTGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGAAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * **
29624 AGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACAAACTCAAAACATAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * *
29689 AAATCGTGGCAAGAAAAGCTTTTCTTACAAAACCAATGCGTCAATTCTCTGTATCCC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATT-T-TGCATCCC
*
29746 AATGAAGATAACGTGTTTATCGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGT-GATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* * * * *
29810 TTTGTCTCATTTACAGTATAAAGTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCACATG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
29875 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * *
29940 AGAAAGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATATGAACTCAAAATATAAGGA
195 AGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGA
* * * * * *
30005 AAATCATGGCTAGAAGAGCTTTTCTTGCAAAACTAATGCTTCAATTTTGTGTATCCC
260 AAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TTT-TGCATCCC
* * * *
30062 AATGAGGATAACGAGTTTATGGTGCCCAATCATTGAAAGAATGGTGATTTTTTCGTAGATCCATT
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* * * * *
30127 TTTGTCTCATTTAAAGTATAAAATTTTATTTTACGGAAAATGGTAGAGAAAAAACTTTTTTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
30192 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAA
* * * * *
30257 AGCAA-GAAGATTGTTATAAGAATCCATGTTTTTTTCATCTAACATATGAACTCAAAATATAAGG
195 AG-AATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* * * * * *
30321 AAAATCATGGCTAGAAGAGCTTTTCTTGCAAAACTAATGCGTCAATTTTGTGTATCCC
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TTT-TGCATCCC
* * * *
30379 AATGAGGATAACGTGTTTATGGTGCCCAATCATAGAAAGAATGGTGATTTTTTCATAGATCCATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* * * *
30444 TTTGTCTCATTTAAAGTATAAACTCTTACTCTAAGGAAAATGGCAGAGAAAAAACTTTTCTCACG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
** * * *
30509 AAATCAAAGCATTAATATCGTGCCTCCCAAAAAGGGGAATGTGTTTTAG-TTGCCTAATCGTGAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTT-GTTTGCCTAATCATGGA
* * * * * * * *
30573 AAGTATGAAGATTTTTATAAGAATCCATGTTTGTTTCATTTAAAATTCGAACTCAAATTATAAGG
194 AAGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGG
* **
30638 AAAATCGTGGCAAGAAAAGCTTTTCTTGCATAACCAATGCGCCAATATTGTGCATCCC
259 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAAT-TT-TGCATCCC
* * * * * * *
30696 AATGAAGATAAAGTGTTCATGGGGCCCAATCACTGAAAGAATTGAGATTTTTTCATAGATCAATG
1 -ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
* * ** * * *
30761 TTTGTCTCATTTAAAGTTTAAACTTTTAATCCGAGGAAAAAGGCAGAGAAAAAACTTTTCTCATG
65 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
* * * * ** * ** *
30826 AAATCAAAGCATTAGTAACATGTATCCCAAAAAAGAGAATGTGTTTTGGCTACCTAATTGTGAAA
130 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG-GA
* * * * ** *
30891 AAGTATGAAGATTTTTATAAGAATCCATGTTTGTTTCATTTAAC-TCACGAACTCAATTTATAAG
194 AAGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACAT-ACGAACTCAAAATGTAAG
*
30955 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCATAACCAATG
258 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATG
30995 TCGCAACGTG
Statistics
Matches: 24292, Mismatches: 4408, Indels: 3854
0.75 0.14 0.12
Matches are distributed among these distances:
297 2 0.00
298 5 0.00
299 256 0.01
300 15 0.00
301 310 0.01
302 5987 0.25
303 388 0.02
304 5 0.00
305 3 0.00
306 25 0.00
307 31 0.00
308 17 0.00
309 9 0.00
310 20 0.00
311 7 0.00
312 32 0.00
313 57 0.00
314 57 0.00
315 79 0.00
316 2399 0.10
317 9994 0.41
318 1281 0.05
319 48 0.00
320 47 0.00
321 30 0.00
322 27 0.00
323 73 0.00
324 49 0.00
325 47 0.00
326 35 0.00
327 66 0.00
328 75 0.00
329 91 0.00
330 133 0.01
331 122 0.01
332 97 0.00
333 64 0.00
334 45 0.00
335 22 0.00
336 42 0.00
337 46 0.00
338 44 0.00
339 45 0.00
340 53 0.00
341 38 0.00
342 51 0.00
343 96 0.00
344 98 0.00
345 77 0.00
346 72 0.00
347 78 0.00
348 79 0.00
349 89 0.00
350 40 0.00
351 37 0.00
352 68 0.00
353 30 0.00
354 56 0.00
355 77 0.00
356 86 0.00
357 75 0.00
358 69 0.00
359 92 0.00
360 58 0.00
361 45 0.00
362 33 0.00
363 33 0.00
364 25 0.00
365 44 0.00
366 36 0.00
367 35 0.00
368 21 0.00
369 23 0.00
370 18 0.00
371 19 0.00
372 17 0.00
373 26 0.00
374 14 0.00
375 34 0.00
376 15 0.00
377 21 0.00
378 14 0.00
379 4 0.00
380 21 0.00
381 27 0.00
382 12 0.00
383 13 0.00
384 23 0.00
385 26 0.00
386 17 0.00
387 6 0.00
388 5 0.00
389 5 0.00
390 1 0.00
391 10 0.00
392 1 0.00
393 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (314 bp):
ATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGT
TTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGA
AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA
GAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAA
AATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATTTTGCATCCC
Found at i:8348 original size:158 final size:156
Alignment explanation
Indices: 1963--2796 Score: 557
Period size: 158 Copynumber: 5.3 Consensus size: 156
1953 TAGATCCATG
* *** * *
1963 TTTGTCTCATTTAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAACCTTTCTCACG
1 TTTGT-TCATTTAAAGTACAAACTCAAATTCTAAGGAAAATGGCAGAGAAAAAACTTTTCTCACG
* * *
2028 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCCTGGAA
65 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAA
* * *
2093 AGAATGAATATTATAATAAGAATCCATG
130 AGAATGAAGATTATTATAAGAAT-CATT
* * * * * * * * *
2121 TTTGTTTTATCTAAAGCACAAACACAAAATGTAAGGAAAATCTTGGCA-AG-AAAAGCTCTTCTT
1 TTTG-TTCATTTAAAGTACAAACTCAAATTCTAAGGAAAA---TGGCAGAGAAAAAACTTTTCTC
* * * * * * ** * * *
2184 GCAAAACCAATGCATCAACTTTC-TGTATCCCGATGAA-GATAACGTGTTTATG-GTGCCCAATC
62 ACGAAATCAAAGCATTAA-TATCGTGTATCCC-AAAAAGGAGAATGTGTTT-TGTTTGCCCAATC
* * * *
2246 ATTGAAAGAATGGAGATTATT-T-CGTAGATCCATG
124 ATGGAAAGAATGAAGATTATTATAAG-A-AT-CATT
** *** *
2280 TTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTCACG
1 TTTGT-TCATTTAAAGTACAAACTCAAATTCTAAGGAAAATGGCAGAGAAAAAACTTTTCTCACG
* * * *
2345 AAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGAATGTTTTTTGTTTGCCTAATCATGGAA
65 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAA
* *
2410 AGAATGAATGATTATTATAAGAACCCTT
130 AGAATGAA-GATTATTATAAGAATCATT
* * * *
2438 GTTTGTTTCATCTAACA-TACGAACTCAAATTATAAGGAAAATCATGGCA-AG-AAAAGCTTTTC
1 -TTTG-TTCATTTAA-AGTACAAACTCAAATTCTAAGG-AAA--ATGGCAGAGAAAAAACTTTTC
** * * ** * * ** * * * * *
2500 TTTCAAAACCAATTCATCAATATTGTGCCTCCCAATGAA-GATAACGTGTTTATG-GTACCCAAT
60 TCACGAAATCAAAGCATTAATATCGTGTATCCCAA-AAAGGAGAATGTGTTT-TGTTTGCCCAAT
* * *
2563 CATTGAAAGAATTG-AGATT-TTTTCATAG-ATCCATG
123 CATGGAAAGAA-TGAAGATTATTAT-A-AGAAT-CATT
** **** *
2598 TTTGTCTCATTTAAAGTGTAAACTTTTCTTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACG
1 TTTGT-TCATTTAAAGTACAAACTCAAATTCTAAGGAAAATGGCAGAGAAAAAACTTTTCTCACG
2663 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAA
65 AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAA
2728 AGAATGAAGATTATTATAAGAAGTCATT
130 AGAATGAAGATTATTATAAGAA-TCATT
* * * *
2756 TTTGCTTCATTTGACA-TACGAACTCAAAATGTAAGGAAAAT
1 TTTG-TTCATTT-AAAGTACAAACTCAAATTCTAAGGAAAAT
2797 CGTGCCAAGA
Statistics
Matches: 493, Mismatches: 141, Indels: 84
0.69 0.20 0.12
Matches are distributed among these distances:
156 10 0.02
157 20 0.04
158 198 0.40
159 165 0.33
160 82 0.17
161 13 0.03
162 5 0.01
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (156 bp):
TTTGTTCATTTAAAGTACAAACTCAAATTCTAAGGAAAATGGCAGAGAAAAAACTTTTCTCACGA
AATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCCAATCATGGAAA
GAATGAAGATTATTATAAGAATCATT
Found at i:10144 original size:158 final size:158
Alignment explanation
Indices: 9659--10147 Score: 456
Period size: 158 Copynumber: 3.1 Consensus size: 158
9649 ATCATTAACT
* * *
9659 GAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTGTATTCTAAGGAA
1 GAATGAAGATTATTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTATATTCTAAGGAA
* * * *
9724 A-ATGGTAGTGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAG
66 ATA-GGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAG
* *
9788 AATATGTTTTGTTTGCCTAATCATGGAAA
130 AATGTTTTTTGTTTGCCTAATCATGGAAA
* * * * * * * * ** * * *
9817 GAATGAATATTATAAT--AAGAATCCATGTTTGTTTTATCTAAAGCACAAACACAAAATGTAAGG
1 GAATGAAGATTAT-TTCGTAG-ATCCATGTTTGTCTCATTTAAAGTATAAACTTATATTCTAAGG
* * * ** * * * * *
9880 AAAATCGTGGCA-AG-AAAAGCTCTTCTTGCAAAACCAATGC-ATCAACT-TTCTGTATCCCGAT
64 -AAAT--AGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAAT-AA-TATTGTGTATCCC-AA
* * * * * *
9941 GAA-GATAATGTGTTTATG-GTGCCCAATCATTGAAA
123 AAAGGAGAATGT-TTTTTGTTTGCCTAATCATGGAAA
* * *
9976 GAATGGAGATTATTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAA
1 GAATGAAGATTATTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTATATTCTAAGGAA
10041 ATAGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGA
66 ATAGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGA
10106 ATGTTTTTTGTTTGCCTAATCATGGAAA
131 ATGTTTTTTGTTTGCCTAATCATGGAAA
10134 GAATGAAGATTATT
1 GAATGAAGATTATT
10148 ATAAGAACCC
Statistics
Matches: 242, Mismatches: 71, Indels: 36
0.69 0.20 0.10
Matches are distributed among these distances:
156 4 0.02
157 13 0.05
158 113 0.47
159 98 0.40
160 11 0.05
161 3 0.01
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.32
Consensus pattern (158 bp):
GAATGAAGATTATTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTATATTCTAAGGAA
ATAGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAATAATATTGTGTATCCCAAAAAGGAGA
ATGTTTTTTGTTTGCCTAATCATGGAAA
Found at i:12085 original size:158 final size:156
Alignment explanation
Indices: 11597--12429 Score: 546
Period size: 158 Copynumber: 5.3 Consensus size: 156
11587 ATCATTAACT
* * *
11597 GAATGGAGATTTTTTCGTAG-ATCCATGTTTGTCTCATTTAAAGTATAAACTTGTATTCTAAGGA
1 GAATGAAGATTATTT-GTAGAATCCATGTTTGTCTCATTTAAAGTATAAACTTATATTCTAAGGA
* * * * * *
11661 AAATGGTAGGGAAAAAACCTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAG
65 AATTGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAATAATATTGTGTATCCCAAAAA-GAG
** *
11726 AATATGTTTTGTTTGCCTAATCATGGAAA
129 AACGTGTTTTG-GTGCCTAATCATGGAAA
* * * * * * * * ** * * *
11755 GAATGAATATTATAAT-AAGAATCCATGTTTGTTTTATCTAAAGCACAAACACAAAATGTAAGGA
1 GAATGAAGATTAT-TTGTAGAATCCATGTTTGTCTCATTTAAAGTATAAACTTATATTCTAAGG-
* * ** * * * * **
11819 AAATCTTGGCA-AG-AAAAGCTCTTCTTGCAAAACCAATGC-ATCAACT-TTCTGTATCCCGATG
64 AAA--TTGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAAT-AA-TATTGTGTATCCC-AAA
* * * *
11880 AAGATAACGTGTTTATGGTGTCGAATCATTGAAA
124 AAGAGAACGTGTTT-TGGTGCCTAATCATGGAAA
* * *
11914 GAATGGAGATTATTTCGTAG-ATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGA
1 GAATGAAGATTATTT-GTAGAATCCATGTTTGTCTCATTTAAAGTATAAACTTATATTCTAAGGA
11978 AATTGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAATAATATTGTGTAAT-CCAAAAACGA
65 AATTGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAATAATATTGTGT-ATCCCAAAAA-GA
* *
12042 GAATGTGTTTTGTTTGCCTAATCATGGAAA
128 GAACGTGTTTTG-GTGCCTAATCATGGAAA
* * * * ** * * * *
12072 GAATGAAGATTATTAT-AAGAATCCTTGTTTGTTTCATCTAACA-TACGAACTCAAAATATAAGG
1 GAATGAAGATTATT-TGTAGAATCCATGTTTGTCTCATTTAA-AGTATAAACTTATATTCTAAGG
* ** * * ** * **
12135 AAAATCATGGCA-AG-AAAAGCTTTTCTTTCAAAACCAATTCATTAATATTGTGCCTCCCAAAGA
64 -AAAT--TGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAATAATATTGTGTATCCCAAA-A
* * * * *
12198 AGATAACGTGTTTATGGTGCCCAAACATTGAAT
125 AGAGAACGTGTTT-TGGTGCCTAATCATGGAAA
* * *
12231 GAATGGAGACTT-TTTCGTAG-ATCCATGTTTGTCTCGTTTAAAGTATAAACTTTTATTCTAAGG
1 GAATGAAGA-TTATTT-GTAGAATCCATGTTTGTCTCATTTAAAGTATAAACTTATATTCTAAGG
* ** * * *
12294 AAAATGGTTGAGAAAAAACTTTTCTAATGAAATCAAAGCAATAATATCT-TGTATCCCAAAGAGG
64 AAATTGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAATAATAT-TGTGTATCCCAAA-AAG
* *
12358 AAAACGTGTTTTGGATGCGTAATCATGGAAA
127 AGAACGTGTTTTGG-TGCCTAATCATGGAAA
* * * *
12389 TAATGAAGATT-TTTATAAGAATCCATGCTTGTTTCATTTAA
1 GAATGAAGATTATTTGT-AGAATCCATGTTTGTCTCATTTAA
12430 CATACGAACA
Statistics
Matches: 497, Mismatches: 141, Indels: 74
0.70 0.20 0.10
Matches are distributed among these distances:
156 10 0.02
157 24 0.05
158 230 0.46
159 205 0.41
160 19 0.04
161 9 0.02
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.33
Consensus pattern (156 bp):
GAATGAAGATTATTTGTAGAATCCATGTTTGTCTCATTTAAAGTATAAACTTATATTCTAAGGAA
ATTGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCAATAATATTGTGTATCCCAAAAAGAGAA
CGTGTTTTGGTGCCTAATCATGGAAA
Found at i:12260 original size:159 final size:157
Alignment explanation
Indices: 11566--12491 Score: 465
Period size: 158 Copynumber: 5.8 Consensus size: 157
11556 GTCAATGAAT
* * * *
11566 ATAACTTGTTTATGGTGCCGAATCATT-AACTGAATGGAGATTTTTTCGTAGATCCATGTTTGTC
1 ATAACGTGTTTATGGTGCCCAATCATTGAA-AGAATGGAGA-TTTTTCGTAGATCCATGTTTGTT
* * *** * * * * * * * *
11630 TCATTTAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGGGAA-AAAA-CCTTTCTCACGAAAT
64 TCATCTAAAGTACAAACTCAAAATATAAGGAAAAT-CT-GGCAAGAAAAGCTTTTCTTACAAAAC
* * *
11693 CAAAGCATTAATATCGTGTATCCCAAA-AAGG
127 CAATGCATTAATATTGTGAATCCCAAAGAA-G
* ** * * * * **
11724 AGAATATGTTT-TGTTTGCCTAATCATGGAAAGAAT-GA-ATATTATAATAAGAATCCATGTTTG
1 ATAACGTGTTTATG-GTGCCCAATCATTGAAAGAATGGAGAT-TTTTCGT-AG-ATCCATGTTTG
* * * * * *
11786 TTTTATCTAAAGCACAAACACAAAATGTAAGGAAAATCTTGGCAAGAAAAGCTCTTCTTGCAAAA
62 TTTCATCTAAAGTACAAACTCAAAATATAAGGAAAATC-TGGCAAGAAAAGCTTTTCTTACAAAA
* * * * *
11851 CCAATGCATCAACT-TTCTGTATCCCGATGAAG
126 CCAATGCATTAA-TATTGTGAATCCCAAAGAAG
* * *
11883 ATAACGTGTTTATGGTGTCGAATCATTGAAAGAATGGAGATTATTTCGTAGATCCATGTTTGTCT
1 ATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATT-TTTCGTAGATCCATGTTTGTTT
* ** *** * * * * * *
11948 CATTTAAAGTGTAAACTTTTATTCTAAGG-AAAT-TGGCAGAGAAAAAACTTTTCTCACGAAATC
65 CATCTAAAGTACAAACTCAAAATATAAGGAAAATCTGGCA-AG-AAAAGCTTTTCTTACAAAACC
* *
12011 AAAGCAATAATATTGTGTAAT-CCAAA-AACG
128 AATGCATTAATATTGTG-AATCCCAAAGAA-G
* * * * * * * * *
12041 AGAATGTGTTT-TGTTTGCCTAATCATGGAAAGAATGAAGATTATT-ATAAGAATCCTTGTTTGT
1 ATAACGTGTTTATG-GTGCCCAATCATTGAAAGAATGGAGATTTTTCGT-AG-ATCCATGTTTGT
* *
12104 TTCATCTAACA-TACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTTCAAAA
63 TTCATCTAA-AGTACAAACTCAAAATATAAGGAAAATC-TGGCAAGAAAAGCTTTTCTTACAAAA
* **
12168 CCAATTCATTAATATTGTGCCTCCCAAAGAAG
126 CCAATGCATTAATATTGTGAATCCCAAAGAAG
* * *
12200 ATAACGTGTTTATGGTGCCCAAACATTGAATGAATGGAGACTTTTTCGTAGATCCATGTTTGTCT
1 ATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGA-TTTTTCGTAGATCCATGTTTGTTT
* * * *** * * * * ** *
12265 CGTTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTTGAG-AA-AAAA-CTTTTCTAATGAAAT
65 CATCTAAAGTACAAACTCAAAATATAAGGAAAAT--CTG-GCAAGAAAAGCTTTTCTTACAAAAC
* * * *
12327 CAAAGCAATAATATCT-TGTATCCCAAAGAGG
127 CAATGCATTAATAT-TGTGAATCCCAAAGAAG
* ** * * * * *
12358 AAAACGTGTTT-TGGATGCGTAATCATGGAAATAATGAAGATTTTT-ATAAGAATCCATGCTTGT
1 ATAACGTGTTTATGG-TGCCCAATCATTGAAAGAATGGAGATTTTTCGT-AG-ATCCATGTTTGT
* * * * * * *
12421 TTCATTTAACA-TACGAACACAAAAAATGAGGAAAATCGTGGCAAGGAAAGCTTTTCTTGCAAAA
63 TTCATCTAA-AGTACAAACTCAAAATATAAGGAAAATC-TGGCAAGAAAAGCTTTTCTTACAAAA
12485 CCAATGC
126 CCAATGC
12492 GTCAATGAAT
Statistics
Matches: 561, Mismatches: 163, Indels: 87
0.69 0.20 0.11
Matches are distributed among these distances:
155 1 0.00
156 13 0.02
157 35 0.06
158 259 0.46
159 215 0.38
160 26 0.05
161 12 0.02
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (157 bp):
ATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTCGTAGATCCATGTTTGTTTC
ATCTAAAGTACAAACTCAAAATATAAGGAAAATCTGGCAAGAAAAGCTTTTCTTACAAAACCAAT
GCATTAATATTGTGAATCCCAAAGAAG
Found at i:13788 original size:159 final size:157
Alignment explanation
Indices: 13624--14434 Score: 442
Period size: 159 Copynumber: 5.1 Consensus size: 157
13614 TTATAATAAG
* * *
13624 AATCCATGTTTGTTTCATCTAACGTACGAACACAAAATGTAAGGAAAATCGTGGCAAGAAAAGCT
1 AATCCATGTTTGTCTCATCTAACGTACGAACTCAAAATATAAGGAAAATC-TGGCAAGAAAAGCT
* *
13689 CCTCTTGCAAAACCAATGCATCAATTTTCTGTATCCCAATGAAGATAACGTGTTTATGGTGCCCA
65 TCTCTTACAAAACCAATGCATCAATTTTCTGTATCCCAATGAAGATAACGTGTTTATGGTGCCCA
*
13754 ATCATTGAAAGAACGGAGATTTTTTCGT
130 ATCATTGAAAGAAAGGAGATTTTTTCGT
* * *** *** * * *
13782 ATATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGG-AAAT-TGGCAGAGAAAAAA
1 A-ATCCATGTTTGTCTCATCTAACGTACGAACTCAAAATATAAGGAAAATCTGGCA-AG-AAAAG
* * * * * * * * * * * *
13845 CTTTTCTCACGAAATCAAAGCATTAA-TATCGTGTAAT-CTAA-AAAGGAGAATGTGTTT-TGTT
63 CTTCTCTTACAAAACCAATGCATCAATTTTC-TGT-ATCCCAATGAA-GATAACGTGTTTATG-G
* * ** **
13906 TGCCTAATCATGGAAAGAAATAAGATTATTATAAG-
124 TGCCCAATCATTGAAAGAAAGGAGATT-TT-TTCGT
* * * *
13941 AATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATATAAGAAAAATCATGGCAAGAAAAGCT
1 AATCCATGTTTGTCTCATCTAACGTACGAACTCAAAATATAAGGAAAATC-TGGCAAGAAAAGCT
* * * * **
14006 TCTCTTTCAAAACCAATTCATCAATATTGTGCCTCCCAATGAAGATAACGTGTTTATGGTGCCCA
65 TCTCTTACAAAACCAATGCATCAATTTTCTGTATCCCAATGAAGATAACGTGTTTATGGTGCCCA
* *
14071 AACATTGAAAGAATGGAGATTTTTTCGT
130 ATCATTGAAAGAAAGGAGATTTTTTCGT
* * ** *** * * * *
14099 AGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTTTACA-GAAAA--TGGTAGGGAAAAA
1 A-ATCCATGTTTGTCTCATCTAACGTACGAACTCAAAATATA-AGGAAAATCTGGCA-AG-AAAA
* * ** * * * * * * * * *
14161 GCTTTTCTAATGAAATCAAAGCTTTAATATCCTGTATCCCAAAGAGGAAAACGTGTTT-TGGATG
62 GCTTCTCTTACAAAACCAATGCATCAATTTTCTGTATCCCAATGAAGATAACGTGTTTATGG-TG
** * * * *
14225 CGTAATCATGGAAAGAATGAAGATTTTTTTAAG-
126 CCCAATCATTGAAAGAAAGGAGA-TTTTTT-CGT
* * * * * * * *
14258 AATCCATGCTTATTTCATTTAACATACGAACTCAAAAAATGAGGAAAATCATGGCAAGGAAAGCT
1 AATCCATGTTTGTCTCATCTAACGTACGAACTCAAAATATAAGGAAAATC-TGGCAAGAAAAGCT
* * * ** * * * * * *
14323 TTTCTTGCAAAACCAACGCGCCAATATTGTGCATCCCAATGAAGACAACGTCTTCATGAG-GCCC
65 TCTCTTACAAAACCAATGCATCAATTTTCTGTATCCCAATGAAGATAACGTGTTTATG-GTGCCC
* * **
14387 AATCACTAAAAGAATTGAGATTTTTTCGT
129 AATCATTGAAAGAAAGGAGATTTTTTCGT
14416 AGATCCATGTTTGTCTCAT
1 A-ATCCATGTTTGTCTCAT
14435 TCAAAGTATA
Statistics
Matches: 463, Mismatches: 158, Indels: 63
0.68 0.23 0.09
Matches are distributed among these distances:
156 9 0.02
157 17 0.04
158 201 0.43
159 212 0.46
160 14 0.03
161 10 0.02
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (157 bp):
AATCCATGTTTGTCTCATCTAACGTACGAACTCAAAATATAAGGAAAATCTGGCAAGAAAAGCTT
CTCTTACAAAACCAATGCATCAATTTTCTGTATCCCAATGAAGATAACGTGTTTATGGTGCCCAA
TCATTGAAAGAAAGGAGATTTTTTCGT
Found at i:14239 original size:158 final size:157
Alignment explanation
Indices: 13422--14566 Score: 630
Period size: 158 Copynumber: 7.2 Consensus size: 157
13412 GAAGATAACC
* * * * *
13422 TGTTTATGG-TGCCGAATCATTGAAAGAATGGAGAGTTTTTCGTAGATCCATGTTTGTCCCATTT
1 TGTTT-TGGTTGCCTAATCATGGAAAGAATGAAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
* * * * * *
13486 AAAGTATAAACTTTTACTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAACAT
65 AAAGTATAAACTTTTAATTTAAGGAAAATGGTAGGGAAAAAGCTTTTCT-ATGAAATCAAAGCAT
* * **
13551 TGATATCGTGTATCCCAAAAAGGAGAATA
129 TAATATCGTGTATCCCAAAGAGGAGAACG
* ** * * *
13580 TGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATAAT--AAGAATCCATGTTTGTTTCATC
1 TGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATT-TTTTCGTAG-ATCCATGTTTGTCTCATT
* ** **** * * * ** * *
13643 TAACGTACGAACACAAAATGTAAGGAAAATCGT-GGCAAGAAAAGCTCCTCT-TGCAAAACCAAT
64 TAAAGTATAAACTTTTAATTTAAGGAAAATGGTAGG-GA-AAAAGCTTTTCTATG--AAATCAAA
* * * * *
13706 GCATCAATTTTC-TGTATCCCAATGAAGATAACG
125 GCATTAA-TATCGTGTATCCCAAAGAGGAGAACG
* * * * *
13739 TGTTTATGG-TGCCCAATCATTGAAAGAACGGAGATTTTTTCGTATATCCATGTTTGTCTCATTT
1 TGTTT-TGGTTGCCTAATCATGGAAAGAATGAAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
* * * * * *
13803 AAAGTGTAAACTTTT-ATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTCACGAAATCAAAGCA
65 AAAGTATAAACTTTTAATT-TAAGGAAAATGGTAGGGAAAAAGCTTTTCT-ATGAAATCAAAGCA
* * *
13867 TTAATATCGTGTAAT-CTAAAAAGGAGAATG
128 TTAATATCGTGT-ATCCCAAAGAGGAGAACG
* * * * *
13897 TGTTTTGTTTGCCTAATCATGGAAAGAAAT-AAGATTATTAT--AAGAATCCTTGTTTGTTTCAT
1 TGTTTTGGTTGCCTAATCATGGAAAG-AATGAAGATT-TTTTCGTAG-ATCCATGTTTGTCTCAT
* ** *** * * ** * * * * *
13959 CTAACA-TACGAACTCAAAATATAAGAAAAATCAT-GGCAAGAAAAGCTTCTCTTTCAAAACCAA
63 TTAA-AGTATAAACTTTTAATTTAAGGAAAATGGTAGG-GA-AAAAGCTTTTCTAT-GAAATCAA
** * * ** * * *
14022 TTCATCAATATTGTGCCTCCCAATGAAGATAACG
124 AGCATTAATATCGTGTATCCCAAAGAGGAGAACG
* * * *
14056 TGTTTATGG-TGCCCAAACATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
1 TGTTT-TGGTTGCCTAATCATGGAAAGAATGAAGATTTTTTCGTAGATCCATGTTTGTCTCATTT
* *
14120 AAAGTATAAACTTTTATTTTACA-GAAAATGGTAGGGAAAAAGCTTTTCTAATGAAATCAAAGCT
65 AAAGTATAAACTTTTAATTTA-AGGAAAATGGTAGGGAAAAAGCTTTTCT-ATGAAATCAAAGCA
* *
14184 TTAATATCCTGTATCCCAAAGAGGAAAACG
128 TTAATATCGTGTATCCCAAAGAGGAGAACG
* * * * *
14214 TGTTTTGGATGCGTAATCATGGAAAGAATGAAGATTTTTT--TAAGAATCCATGCTTATTTCATT
1 TGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTTTTTCGT-AG-ATCCATGTTTGTCTCATT
** *** ** * ** * *
14277 TAACA-TACGAACTCAAAAAATGAGGAAAATCAT-GGCAAGGAAAGCTTTTCT-TGCAAAACCAA
64 TAA-AGTATAAACTTTTAATTTAAGGAAAATGGTAGGGAA--AAAGCTTTTCTATG--AAATCAA
* *** * * * * *
14339 CGCGCCAATATTGTGCATCCCAATGAAGACAACG
124 AGCATTAATATCGTGTATCCCAAAGAGGAGAACG
* * * *
14373 TCTTCATGAG--GCCCAATCACT-AAAAGAATTG-AGATTTTTTCGTAGATCCATGTTTGTCTCA
1 TGTT-TTG-GTTGCCTAATCA-TGGAAAGAA-TGAAGATTTTTTCGTAGATCCATGTTTGTCTCA
* * * * *
14434 TTCAAAGTATAAACTTTTATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAG
62 TTTAAAGTATAAACTTTTAATTTAAGGAAAATGGTAGGGAAAAAGCTTTTCT-ATGAAATCAAAG
* *
14499 CATTAATATCGTGTATCCCAACGAGGAGAATG
126 CATTAATATCGTGTATCCCAAAGAGGAGAACG
* *
14531 TGTTTTGTTTGCCTAATCACGGAAAGAATGAAGATT
1 TGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATT
14567 ATTATAAGAA
Statistics
Matches: 700, Mismatches: 229, Indels: 116
0.67 0.22 0.11
Matches are distributed among these distances:
156 1 0.00
157 29 0.04
158 336 0.48
159 306 0.44
160 26 0.04
161 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.31
Consensus pattern (157 bp):
TGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTTTTTCGTAGATCCATGTTTGTCTCATTTA
AAGTATAAACTTTTAATTTAAGGAAAATGGTAGGGAAAAAGCTTTTCTATGAAATCAAAGCATTA
ATATCGTGTATCCCAAAGAGGAGAACG
Found at i:14389 original size:634 final size:634
Alignment explanation
Indices: 13106--30994 Score: 21096
Period size: 634 Copynumber: 28.5 Consensus size: 634
13096 ACCAATGCGT
* * * * * *
13106 CAATGAATATAACCTGTTTATGGTGCCGAATCGTTGAAAGAAGGGAGATTTTTTCCTAGATCCAT
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* * *
13171 GTTTGTCTCATTTAAACTATAAACTTTTATTCTAAGGAAAATGGTTGAGAAAAAACTTTTCTCAC
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
*
13236 GAAATCAAAGCATTAATATCAG-GTATCCCAAAGAGGAGAATGTGTTTTGTTTGCCTAATCATGG
131 GAAATCAAAGCATTAATATC-GTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGG
* * *
13300 AAAGAATGAAGATTATTATAAGAATTCATGTTTGTTTCATCTAAGATACGAACTCAAAATGTAAG
195 AAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAG
* * **
13365 GAAAATTGGGGCAAGATGAGCTTTTCTTGCAAAACCAATG---C--------G--T--CAATGAA
260 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAA
* * *
13415 GATAACCTGTTTATGGTGCCGAATCATTGAAAGAATGGAGAGTTTTTCGTAGATCCATGTTTGTC
325 GATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTC
* *
13480 CCATTTAAAGTATAAACTTTTACTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
390 TCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
* * *
13545 AAACATTGATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCATGGAAAGAATG
455 AAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
* * * *
13610 AAGATTATAATAAGAATCCATGTTTGTTTCATCTAACGTACGAACACAAAATGTAAGGAAAATCG
520 AAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCG
* ** * * * *
13675 TGGCAAGAAAAGCTCCTCTTGCAAAACCAATGCATCAATTTTCTGTATCC
585 TGGCAAGGAAAGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* *
13725 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAACGGAGATTTTTTCGTATATCCAT
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* * * *
13790 GTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAATTGGCAGAGAAAAAACTTTTCTCAC
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
*
13855 GAAATCAAAGCATTAATATCGTGTAAT-CTAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGG
131 GAAATCAAAGCATTAATATCGTGT-ATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGG
*
13919 AAAGAAAT-AAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATATAA
195 AAAG-AATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAA
* * * * * *
13983 GAAAAATCATGGCAAGAAAAGCTTCTCTTTCAAAACCAATTCATCAATATTGTGCCTCCCAATGA
259 GGAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGA
*
14048 AGATAACGTGTTTATGGTGCCCAAACATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGT
324 AGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGT
* * * * *
14113 CTCATTTAAAGTATAAACTTTTATTTTACA-GAAAATGGTAGGGAAAAAGCTTTTCTAATGAAAT
389 CTCATTTAAAGTATAAACTTTTATTCTA-AGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAAT
* * * * * ** *
14177 CAAAGCTTTAATATCCTGTATCCCAAAGAGGAAAACGTGTTTTGGATGCGTAATCATGGAAAGAA
453 CAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAA
* * * * * * *
14242 TGAAGATTTTTTTAAGAATCCATGCTTATTTCATTTAACATACGAACTCAAAAAATGAGGAAAAT
518 TGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAAT
* * *
14307 CATGGCAAGGAAAGCTTTTCTTGCAAAACCAACGCGCCAATATTGTGCATCC
583 CGTGGCAAGGAAAGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* * * * * *
14359 CAATGAAGACAACGTCTTCATGAG-GCCCAATCACTAAAAGAATTGAGATTTTTTCGTAGATCCA
1 CAATGAAGATAACGTGTTTATG-GTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCA
* *
14423 TGTTTGTCTCATTCAAAGTATAAACTTTTATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCTCA
65 TGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCA
* ** *
14488 CGAAATCAAAGCATTAATATCGTGTATCCCAACGAGGAGAATGTGTTTTGTTTGCCTAATCACGG
130 TGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGG
* * * * *
14553 AAAGAATGAAGATTATTATAAGAATTCAAGTTTGTTTCAACTAACATACAAACTCAAAATGTAAG
195 AAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAG
* * *
14618 GAAAATCATGGCAAGAAGAGCTTTTCCTGCAAAACCAATG---C--------G--T--CAATGAA
260 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAA
* * * ** ** ** * * * *
14668 TATAACCTGTTTATGGTGCCGAATCATTGACTGAATGGAGATCATGGCAAGAAGA-GCTTTTCTT
325 GATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTC--GTAGATCCATGT-TT
* * * * * ** *
14732 G-CAAAACCAAAGCGTCAATGAATATAACCTATTTATGGTGCCGAATCATTGACTGAATGG-AGA
387 GTC----TC--A--TTTAA--AGTATAAACT-TTTAT--T--C---T-AAGGA--AAATGGTAGA
* * ** * * * * * * * * * ***
14795 TTTTTTCATAGATCCATGTTTGTCTC--ATTTAAAGTATAAACTTTTCTTCTA-AGGAAAATAGT
431 ------GA-AAAAAC-T-TTTCTCACGAAATCAAAGCATTAA--TATCGTGTATCCCAAAA-AG-
***** * * * * * * * *
14857 TGAGAAAAAACTTT-TCT-CACGAA--AT-CAAAGCATTAATATCGTGTATCCCAAAAAGGAGAA
483 -GAGAATGTGTTTTGTTTGC-CTAATCATGGAAAGAATGAAGA---T-TAT----TATA--AGAA
* * * *
14917 T--ATGTTTTGTTTGC--CTAATCATGGAAAGAA-TGAATATTATAA-TAAGAATCCATGTTTGT
536 TCCATG-TTTGTTT-CATCTAA-CAT---ACGAACTCAA-AATATAAGGAA-AAT-C--G--TG-
* * * * ** * * * ** * * *
14976 TTTATCTAACGTACAAACAAAAAATTT-AAGGAAAATC-GTGGCAAGAAAAGCTCTTCTTGCAAA
587 ----GC-AA-GGA-AAGC-----TTTTCTTGCAAAACCAAT-GC--GTCAA--TATT-GTGC-AT
*
15039 AC
633 CC
* * * * * * * * **
15041 CAATG--CATCAAC-T-TTCTAT-AT-CCCGATGA-AGATAACGTGTTTATGGTGCCCAATCATT
1 CAATGAAGAT-AACGTGTT-TATGGTGCCCAATCATTGA-AA---G--AATGGAG---ATTTTTT
* ** * * **** * * ** * * * ****
15099 -GAAAGAATGGAGATTATTTCGTAGATCCATGTTTGTCTCTTTTAAAGTGTAAACTTTTATTCTA
55 CG-TAG-AT--CCA-TGTTT-GT--CT-CA---TT-TAAAGTATAAACT-TTTATTCTAAGGAAA
*
15163 A-GGAAAATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAA
106 ATGG-TA------GAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAA
* * * *
15227 AGGAAAATATGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATAATAAGAATCCTTGTTTG
164 AGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTTG
* * * * * * *
15292 CTTCATCTAACGTACGAACTCAAAATGTGAGGACAATCATGGCAAGAAGAGCTTTTCTTGCAAAA
229 TTTCATCTAACATACGAACTCAAAATATAAGGAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAA
* * * * *
15357 CCAATGCATGAACT-TTCTGTATCCCGATGAAGATAACGTGTTTATCGTGCCCAATCATTGAAAG
294 CCAATGCATCAA-TATTGTGCATCCCAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAG
* * *
15421 AGTGGAGATTATTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAA
358 AATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAA
* *
15486 ATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAAGAAAA
423 ATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAA
* * *
15551 TATGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATAATAAGAATCCTTGTTTGTTTCATC
488 TGTGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATC
* * *
15616 TAACGTACGAACTCAAAATGTAAGG---A------C-----AATCTTTTCTTGCAAAACCAATGC
553 TAACATACGAACTCAAAATATAAGGAAAATCGTGGCAAGGAAAGCTTTTCTTGCAAAACCAATGC
15667 GTC-A-A---TG-----
618 GTCAATATTGTGCATCC
* * ** *
15674 -AAT----ATAACCTGTTTATGGTGCCGAATCATTGACTGAATGGAGATTTTTTCATAGATCCAT
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* *
15734 GTTTATCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTAAT
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
* * * * ** *
15799 GAAATCAAAGCATTAATATCATGTATCCCAAAGAGGAAAACGTGTTTTGAATGCGTAATCATGGA
131 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
* * * * * * * * *
15864 AAGAATGAGGATTTTTATAAGAATCCATGCTTGTATCATTTAACATTCGAACACAAAAAATGAGG
196 AAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGG
* * *
15929 AAAATCGTGGCAAGGAAAGCTTTTCTTACAAAACCAATGCGTCAATATTGTGCATCCCAATGAAG
261 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAAG
* * * * * * *
15994 ATAACGTCTTCAAGGGGCCCAATCACTGAAAGAATTGATATTTTTTCGTAGATCCATGTTTGTCT
326 ATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCT
*
16059 CATTTAAAGTATAAACTTTTATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAA
391 CATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAA
* * *
16124 AGCATTAATATCTTGTATCCCAAAGAGGATAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGA
456 AGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGA
* *
16189 AGATTATTATAAGAATTCATGTTTGTTTCATCAAACATACGAACTCAAAATATAAGGAAAATCGT
521 AGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCGT
16254 GGC-AGGAAGAGCTTTTCTTGCAAAACCAATGCGTC-A-A---TG-----
586 GGCAAGGAA-AGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* ** * *
16293 -AAT----ATAACCTGTTTATGGTGCCGTATCAATGAAAGAATGGAGATTTTTTCGTAGATCCAA
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* * *
16353 GTTTGTCTCATTTAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAAATTTTCTCAC
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
* *
16418 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAAAATATGTTTTGTTTGCCTAATCATGGA
131 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
* * * * *
16483 AAGAATGAAGATTATAATAAGAATCCTTGTTTGTTTCATCTAACGTACGAACACAAAATGTAAGG
196 AAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGG
* * * *
16548 AAAATCGTGGCAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAATTTTCTGTATCCCAATGAAG
261 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAAG
* *
16613 ATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGACCCACGTTTGTCT
326 ATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCT
* *
16678 CATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGGGAAAAAACTTTTCTCACGAAATCAA
391 CATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAA
* *
16743 AGCATTAATATCGTGAAAT-CCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAAAG
456 AGCATTAATATCGTG-TATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
* * *
16807 AAGATTATTATAAGAATCCTTGCTTGTTTCATCTAACATACGAACTCAAAATGTAAGGAAAATCG
520 AAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCG
16872 TGGCAA-GAAGAGCTTTTCTTGC--AA--AA--C--C-A-A---TGCAT--
585 TGGCAAGGAA-AGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* * * * *
16907 CAATGAATATAACCTGCTTATGGTGCCAAATCATTGAAAGAATGGAGGTTTTTTCGTAGATCCAT
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* *
16972 GTTTGTCTCATTTAAAGTATAAACTTTTATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAC
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
*
17037 GAAATCAAAGCATTAATATC-TGGTATCCCAAAGAGGAGAATGTGTTTTGTTTGCCTAATCATGG
131 GAAATCAAAGCATTAATATCGT-GTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGG
* * *
17101 AAAGAATGAAGATTATTATAAGAATTCATGTTTGTTTCATCAAACATACGAACTCAAAATTTAAG
195 AAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAG
* *
17166 GAAAATCGTGGCAGGAAGAGCTTTTCTTGCAAAACCAATG---C--------G--T--CAATGAA
260 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAA
* * ** * *
17216 TATAACCTGTTTATGGTGCCGTATCAATGAAAGAATGGAGATTTTTTTGTAGATCCATGTTTGTC
325 GATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTC
* *
17281 TCATTTAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAAATTTTCTCACGAAATCA
390 TCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
* *
17346 AAGCATTAATATCGTGTATCCCAAAAAGGAAAATATGTTTTGTTTGCCTAATCATGGAAAGAATG
455 AAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
* * * * * * *
17411 AAGATTATAATAAGAATCCTTGTTTGTTTCATCTAACGTGCAAACACAAAATGTAAGGAAAATCG
520 AAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCG
* * * * * *
17476 TGGCAAGAAAAGCTCTTCTTGCGAAACCAATGCATCAACT-TTCTGTATCC
585 TGGCAAGGAAAGCTTTTCTTGCAAAACCAATGCGTCAA-TATTGTGCATCC
* * * * *
17526 CGATGAAGATATCGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTATTTCATAGATCCAT
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* *
17591 GTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGGGAAAAAACTTTTCTCAT
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
*
17656 GAAATCAAAGCATTAATATCGTGAAAT-CCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGG
131 GAAATCAAAGCATTAATATCGTG-TATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGG
* * * *
17720 AAAGAAAGAAGATTATTATAAGAATCCTTGCTTGTTTCATCTAACATACGAACTCAAAATGTAAG
195 AAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAG
*
17785 GAAAATCGTGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCATC-A-A---TG------AAT---
260 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAA
* * * *
17836 -ATAACCTGCTTATGGTGCCAAATCATTGAAAGAATGGAGGTTTTTTCGTAGATCCATGTTTGTC
325 GATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTC
*
17900 TCATTTAAAGTATAAACTTTTATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
390 TCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
* *
17965 AAGCATTAATATCTTGTATCCCAAAGAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
455 AAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
* * ** *
18030 AAGATTATTATAAGAATTCATGTTTGTTTCATCAAACGGACGAACTCAAAATGTAAGGAAAATCG
520 AAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCG
*
18095 TGGC-AGGAAGAGCTTTTCTTGCAAAACCAAAGCGTC-A-A---TG-----
585 TGGCAAGGAA-AGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* * ** *
18135 -AAT----ATAACCTGTTTATGGTTCCGTATCAATGAAAGAATGGAGATTTTTTCGTAGATCCAT
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
18195 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAA-GAGTAGAGAAAAAACTTTTCTCA
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATG-GTAGAGAAAAAACTTTTCTCA
* * * * *
18259 CGAAATCAAAGCATTGATATCGTGTATCGCAAAAAGGAGAATATGTTTTTTTTGCCTAATCATGG
130 TGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGG
* * * * * * *
18324 AAAGAATGAATATTATAATAAGAATCCATGTTTGTTTTATCTAACGTACAAACACAAAATGTAAG
195 AAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAG
* * * * *
18389 GAAAATCGTGGTAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACT-TTCTGTATCCCGATGA
260 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TATTGTGCATCCCAATGA
* * *
18453 AGATAACGTGTTTATGGTGCCGAATCATTGAAAGAGTGGAGATTATTTCGTAGATCCATGTTTGT
324 AGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGT
*
18518 CTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATC
389 CTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATC
18583 AAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAAT
454 AAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAAT
* **
18648 GAAGATTATTATAAGAAACGTTGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATC
519 GAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATC
* * * * * * *
18713 ATGGC-AGGAAAAGCTTTTCTTTCAAAACTAATTCATCAGTATTGTGCCTCC
584 GTGGCAAGG-AAAGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* * *
18764 CAATGAAGATAACGTGTTTATGGTGCCCAAACTTTGAAAGAATGGAGA-CTTTTCTGTAGATCCA
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTC-GTAGATCCA
*
18828 TGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTAA
65 TGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCA
* * * * ** *
18893 TGAAATCAAAGCATTAATATCTTGTATCCCAAAGAGGAAAACGTGTTTTGGATGCTTAATCATGG
130 TGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGG
* * * * * * * * *
18958 AAAGAATGAGGATTTTTATAAGAATCCATGCTTGTATCATTTAACATATGAACACAAAAAATGAG
195 AAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAG
* * *
19023 GAAAATCGTGGCAAGGAAAGCTTTTCTTACAAAACCAATGCGTCAATATTGTGCATCCCAATGAA
260 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAA
* * * * * * *
19088 GATAACGTCTTCATGGGGCCCAATCACTAAAAGAATTGAGATTTTTTCATAGATCCATGTTTGTC
325 GATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTC
*
19153 TCATTTAAAGTATAAACTTTTATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
390 TCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
* *
19218 AAGCATTAATATCTTGTATCCCAAAGAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
455 AAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
* * * * *
19283 AATATTATTATAAGAATTCATGTTTGTTTCATATAACATACGAACTCAAAATGTAAGGAAAATCA
520 AAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCG
19348 TGGCAA-GAAGAGCTTTTCTTGC--AA--AA--C--C-A-A---TGCAT--
585 TGGCAAGGAA-AGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* * * * *
19383 CAATGAATATAACCTGTTTATGGTGCCAAATCATCGAAAGAATGGAGATTTTTTCGTAGATCCAA
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* * * *
19448 GTTTGTCACATTTAAAGTATAAACTTTTATTTTACGGAAAATGGTAGAGAAAAAACTTTTCTAAT
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
* * * * * ** ** *
19513 GAAATCAAAGC-TTGAATATCCTGTAACCCAAAGAGGAAAACGTGTTTTGGATGTGTAATCACGG
131 GAAATCAAAGCATT-AATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGG
* * * * * *
19577 AAACAATGAAGATTATAATAAGAATCCTTGTTTGTTTCATCTAACGTACGAACCCAAAATGTAAG
195 AAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAG
* * * * **
19642 GAAAATCGTGGCAAGAAAAGCTCTTCTTGCAAAACCAACGCATCAATTTTCTATATCCCAATGAA
260 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAA
* * * * * * *
19707 GATAGCATGTTTATGGTGCCGAATTATTGAAAGATTGGAGATTATTTCGTAGATTCATGTTTGTC
325 GATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTC
*
19772 TCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
390 TCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
*
19837 AAGCATTAATATCATGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
455 AAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
* ** *
19902 AAGATTATTATAAGAAACGTTGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCA
520 AAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCG
* * * * * *
19967 TGGC-AGGAAAAGCTTTTCTTTCAAAGCCAATTCATCAGTATTGTGCCTCC
585 TGGCAAGG-AAAGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* * *
20017 CAATGAAGATAACGTGTTTATGGTGCCCAAACTTTGAAAGAATGGAGA-CTTTTCTGTAGATCCA
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTC-GTAGATCCA
*
20081 TGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTAA
65 TGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCA
* * * * * * *
20146 TGAAATCAAAGCATTAATATCTTGTATCCCAAAGAGGAAAACGTGATTTGGTTGCGTAATCATGG
130 TGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGG
* * * * * * * * *
20211 AAAGAATGAGGATTTTTATAAGAATCCATGCTTGTATCATTTAACATTCGAACACAAAAAATGAG
195 AAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAG
* * * *
20276 GAAAATTGTGGCAAGGAAAGCTTTTCTTACAAAACCAATGCGTCAATATTGTGCATCCCAATGAA
260 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAA
* * * * * * *
20341 GATAACGTCTTCAAGGGGCCCAATCACTGAAAGAATTGATATTTTTTCGTAGATCCATGTTTGTC
325 GATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTC
*
20406 TCATTTAAAGTATAAACTTTTATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
390 TCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
* *
20471 AAGCATTAATATCTTGTATCCCAAAGAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
455 AAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
* * *
20536 AAGATTATTATAAGAATTCATGTTTGTTTCATCAAACATACGAACTCAAAATGTAAGGAAAATCG
520 AAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCG
20601 TGGC-AGGAAGAGCTTTTCTTGCAAAACCAATGCGTC-A-A---TG-----
585 TGGCAAGGAA-AGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* ** *
20641 -AAT----ATAACCTGTTTATGGTGCCGTATCAATGAAAGAATGGAGATTTTTTCGTAGATCCAT
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* * *
20701 GTTTGTCTCATTTAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAAATTTTCTCAC
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
* * *
20766 GAAATCAAAGCATTAATACCGTGTATCCCAAAAAGGAAAATATGTTTTGTTTGCCTAATCATGGA
131 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
* * * * * *
20831 AAGAATGAAGATTATAATAAGAATCCTTGTTTGTTTCATCTAACGTACAAACACAAAATGTAAGG
196 AAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGG
* * * *
20896 AAAATCGTGGCAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACT-TTCTGTATCCCGATGAA
261 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAA-TATTGTGCATCCCAATGAA
* *
20960 GATAACGTGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTATTTCGTAGATCCATGTTTGTC
325 GATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTC
* *
21025 TCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGGGAAAAAACTTTTCTCACGAAATCA
390 TCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
* *
21090 AAGCATTAATATCATGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGGAAGAATG
455 AAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
* ** *
21155 AAGATTATTATAAGAAACGTTGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCA
520 AAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCG
* * * * * *
21220 TGGC-AGGAAAAGCTTTTCTTTCAAAGCCAATTCATCAGTATTGTGCCTCC
585 TGGCAAGG-AAAGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* * *
21270 CAATGAAGATAACGTGTTTATGGTGCCCAAACTTTGAAAGAATGGAGA-CTTTTCTGTAGATCCA
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTC-GTAGATCCA
*
21334 TGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTAA
65 TGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCA
* * * * * * *
21399 TGAAATCAAAGCATTAATATCTTGTATCCCAAAGAGGAAAACGTGATTTGGTTGCGTAATCATGG
130 TGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGG
* * * * * * * * * *
21464 GAAGAATGAGGATTTTTATAAGAATCCATGCTTGTATCATTTAACATTCGAACACAAAAAATGAG
195 AAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAG
* * * *
21529 GAAAATTGTGGCAAGGAAAGCTTTTCTTACAAAACCAATGCGTCAATATTGTGCATCCCAATGAA
260 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAA
* * * * * * *
21594 GATAACGTCTTCAAGGGGCCCAATCACTGAAAGAATTGATATTTTTTCGTAGATCCATGTTTGTC
325 GATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTC
*
21659 TCATTTAAAGTATAAACTTTTATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
390 TCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
* *
21724 AAGCATTAATATCTTGTATCCCAAAGAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
455 AAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
* * *
21789 AAGATTATTATAAGAATTCATGTTTGTTTCATCAAACATACGAACTCAAAATGTAAGGAAAATCG
520 AAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCG
21854 TGGC-AGGAAGAGCTTTTCTTGCAAAACCAATGCGTC-A-A---TG-----
585 TGGCAAGGAA-AGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* * *
21894 -AAT----ATAACCTGTTTATGGTG-CCAATTCATCGAAAGAATGGAGATTTTTTCGTAGATCAA
1 CAATGAAGATAACGTGTTTATGGTGCCCAA-TCATTGAAAGAATGGAGATTTTTTCGTAGATCCA
* * * * *
21953 TGTTTGTCTCGTTTAAAGTATAAACTTGTAATCTCAGGAAAATGGTAGAGAAAAAAGTTTTCTCA
65 TGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCA
* * *
22018 CGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTCTTTGCCTAATCATGG
130 TGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGG
* * * * *
22083 AAAGAATGAAGATTATAATAAGAATCCTTGTTTGTTTCATCTAACGTACGAACACAAAATGTAAG
195 AAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAG
*
22148 GAAAATCGTGGCAAGAAAAGCTCTTCTTGCAAAACCAATGCATC--------G-AT-----T---
260 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAA
*
22196 --T-TC-TG--TA---T-CCCAATCATTGAAAGAATGGAGATTTTTTCGTAGA-CCAATGTTTGT
325 GATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCC-ATGTTTGT
* * *
22250 CTCATTTAAAGTGTGAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTGTTCTCACGAAATC
389 CTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATC
* *
22315 AAAGCATTAATATCGTGTATCCAAAAAAGGAGAATGTTTTTTGTTTGCCTAATCATGGAAAGAAT
454 AAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAAT
* * *
22380 AAAGATTATTATAAGAATCCTTGTTTTTTTCATCTAACATACGAACTCAAAATATAAGGAAAATC
519 GAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATC
* * * * * * *
22445 ATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCGTCAATACTATGCCTCC
584 GTGGCAAGGAAAGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* * *
22496 CAATGAAGATAACGTGTTTATGGTGCCCAAACATTGAAAGAATGGAGACTTTTCTC-TTGATCCA
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGA-TTTTTTCGTAGATCCA
* * *
22560 TGTTTGTCTCTTTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCACT
65 TGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCA
* * * *
22625 TGAAATCAAAGCATTAATATCGTGTATCCCAAAGATGAGAATGTGTTTTGCTTGCCTAACCATGG
130 TGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGG
* *
22690 AAAGAATGAAGAATATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATGTAAG
195 AAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAG
* * *
22755 GAAAATCATGGCAGGAAGAGCTTTTCTTGCAAAACCAATG---C------GT---T---AATGAA
260 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAA
* * * *** *
22805 TATAACCTGTTTATGGTGCCGAATCAGCAAAAGAATGGAGATTTTTTCGTAGATCAATGTTTGTC
325 GATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTC
* * * *
22870 TCATTTAAAGTATAAACTTGTAATCTCAGGAAAATGGTAGAGAAAAAAGTTTTCTCACGAAATCA
390 TCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
* * *
22935 AAACATTAATATCGTGTA-CCCAAAAAGGAGAATATGTTTTCTTTGCCTAATCATGGAAAGAATG
455 AAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
* * * * *
22999 AAGATTATAATAAGAATCCTTGTTTGTTTCATCTAACGTACGAACACAAAATGTAAGGAAAATCG
520 AAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCG
* * * * * * * *
23064 TGGTAAGAAAAGCTCTTCTTGCAAAACCAATGCATCGATTTTCTGTATCC
585 TGGCAAGGAAAGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* * *
23114 CAATGAAGATAACATGTTTATGGTGCCCAATCATTTAAAGAATGGAGATTTTTTCGTAGACCCAT
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* * *
23179 GTTTGTCTCATTTAAAGTGTGAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAC
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
* *
23244 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGAAGAATGTTTTTTGTTTGCCTAATCATGGA
131 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
*
23309 AAGAATGAAGATTATTATAAGAATCCTTGTTTGTTTCATCTAACATACGAACTCAAAATATAAGG
196 AAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGG
* * * * * * *
23374 AAAATCATGGCAAGAAAAGCTTTTCTTTCAAAACCAATTCGTCAATACTATGCCTCCCAATGAAG
261 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAAG
* * *
23439 ATAACGTGTTTATGGTGCCCAAACATTGAAAGAATGGAGA-CTTTTCTGTTGATCCATGTTTGTC
326 ATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTC-GTAGATCCATGTTTGTC
* * *
23503 TCTTTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTAATGAAATCA
390 TCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
* * * * ** *
23568 AAGCATTAATATCTTGTATCCCAAAGAGGAAAACGTGTTTTGGATGCTTAATCATGGAAAGAATG
455 AAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
* * * * * * * *
23633 AGGATTTTTATAAGAATCCATGCTTGTTTCATTTAACATATGAACACAAAAAATGAGGAAAATCG
520 AAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCG
*
23698 TGGCAAGGAAAGCTTTTCTTACAAAACCAATGCGTCAATATTGTGCATCC
585 TGGCAAGGAAAGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* * * * * * *
23748 CAATGAAGATAACGTCTTCATGGGGCCCAATCACTAAAAGAATTGAGATTTTTTCATAGATCCAT
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* *
23813 GTTTGTCTCATTTAAAGTATAAACTTTTATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAC
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
* *
23878 GAAATCAAAGCATTAATATCTTGTATCCCAAAGAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
131 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
* * * *
23943 AAGAATGAATATTATTATAAGAATTCATGTTTGTTTCATCTAAAATACGAACTCAAAATGTAAGG
196 AAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGG
* *
24008 AAAATCATGGCAAGAAGAGCTTTTCTTGCAAAACCAATGCATC-A-A---TG------AAT----
261 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAAG
* * * * * *
24058 ATAACCTGTTTATGGTGCCAAATCATCGAAAGAATGGAGATTTTTTCATAGATCCAAGTTTGTCA
326 ATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCT
* * * *
24123 CATTTAAAGTATAAACTTTTATTTTACGGAAAATGGTAGAGAAAAAACTTTTCTAATGAAATCAA
391 CATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAA
* * * * * * ** ** * *
24188 AGC-TTGAATATCCTGTAACCCAAAGAGTAAAACGTGTTTTGGATGTGTAATCACGGAAACAATG
456 AGCATT-AATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
* * * * *
24252 AAGATTATAATAAGAATCCTTGTTTGTTTCATCTAACGTACGAACCCAAAATGTAAGGAAAATCG
520 AAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCG
* * * *
24317 TGGCAAGAAAAGCTCTTCTTGCAAAACCAACGCATCAA-A---T--ATCC
585 TGGCAAGGAAAGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* * *
24361 CAATGAAGATAGCATGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* * * * *
24426 GTTTGTCTCATTTAAAGTATAAACTTGTATTCTCAGGAAAATGGTAGCGAAAAAAGTTTTCTCAC
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
* *
24491 AAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCATGGA
131 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
** * * * * *
24556 AAGAATGAAGATTAGAATAAGAGTCCTTGTTTGTTTCATCTAACGTACGAACACAAAATGTAAGG
196 AAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGG
** * * * *
24621 AAAATCGTGGCAAGAAAAGCCCTTCTTGCAAAACCAATGCATCAATTTTCTGTATCCCAATCAAG
261 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAAG
* *
24686 ATAACATGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGACCCATGTTTGTCT
326 ATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCT
* * *
24751 CATTTAAAGTTCAAACTTTTATTAAACTTTTATTCTAGGGAAAGTGGTAGAGAAAAAACTTATCT
391 CATTTAAAG----------TA-TAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCT
* *
24816 GATGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCAT
445 CACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCAT
* *
24881 GAAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAACATA
510 GGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATA
* * * *
24946 AGGAAAATCGTGGCAAGAAAAGCTTTTCTTACAAAACCAATGCGTCAAT-TCTCTGTATCC
575 AGGAAAATCGTGGCAAGGAAAGCTTTTCTTGCAAAACCAATGCGTCAATAT-TGTGCATCC
* *
25006 CAATGAAGATAACATGTTTATTGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGT-GATCCAT
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* * *
25070 GTTTGTCTCATTTACAGTAGAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCACAT
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
*
25135 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGATTGTGTTTTGTTTGCCTAATCATGGA
131 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
* * * *
25200 AAGAAAGAAGATTATTATAAGAATTCATGTTTATTTCATCTAACATACGAACTCAAAATGTAAGG
196 AAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGG
* * *
25265 AAAATCGTGGTAAGAAGAGCTTTTCTTGCAAAACCAATG---C--------G--T--CAATGAAT
261 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAAG
* * *
25315 ATAACTTGTTTATGGTGCCGAATCATT-AACTGAATGGAGATTTTTTCGTAGATCCATGTTTGTC
326 ATAACGTGTTTATGGTGCCCAATCATTGAA-AGAATGGAGATTTTTTCGTAGATCCATGTTTGTC
* *
25379 TCATTTAAAGTATAAACTTGTATTCTAAGGAAAATGGTAGAGAAAAAACCTTTCTCACGAAATCA
390 TCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
* *
25444 AAGCATTAATATCGTGTATCCCAAAAAGGAGAATATGTTTTGTTTGCCTAATCCTGGAAAGAATG
455 AAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
* * * * * * *
25509 AATATTATAATAAGAATCCATGTTTGTTTTATCTAA-AGCACAAACACAAAATGTAAGGAAAATC
520 AAGATTATTATAAGAATCCATGTTTGTTTCATCTAACA-TACGAACTCAAAATATAAGGAAAATC
* * * * * *
25573 TTGGCAAGAAAAGCTCTTCTTGCAAAACCAATGCATCAACT-TTCTGTATCC
584 GTGGCAAGGAAAGCTTTTCTTGCAAAACCAATGCGTCAA-TATTGTGCATCC
* *
25624 CGATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCCAT
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* *
25689 GTTTGTTTCATTTAAAGTATAAACTTTTATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
*
25754 GAAATCAAAGCATTAAAATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
131 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
* *
25819 AAGAATGAAGATTATTATAAGAATTCATGATTGTTTCATCTAACATACGAACTCAAAATATAAGG
196 AAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGG
* * * * * * *
25884 AAAATCATGGCTAGAAGAGCTTTTCTTGCAAAACTAATGCATCAATTTTGTGTATCCCAATGAGG
261 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAAG
* * *
25949 ATAACGTGTTTATGGTGCCCAATCATAGAAAGAATGGTGATTTTTTCATAGATCCATGTTTGTCT
326 ATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCT
* *
26014 CATTTAAAGTATAAACTCTTACTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAA
391 CATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAA
** * * *
26079 AGCATTAATATCGTGCCTCCCAAAAAGGAGAATGTGTTTTGGTTGCCTAATCGT-GAAAGGTATG
456 AGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAA-GAATG
* * * * * *
26143 AAGATTTTTATAAGAATCCATGTTTGTTTCATTTAAAATTCGAACTCAAATTATAAGGAAAATTG
520 AAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCG
* * *
26208 TGGCAAGAAAAGCTTTTCTTGCATAACCAATGCGCCAATATTGTGCATCC
585 TGGCAAGGAAAGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* * * * * * * *
26258 CAATGAAGATAAAGTGTTCATGGGGCCCAATCACTGAAAGAATTGAGAGTTTTTCATAGATCAAT
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* * *
26323 GTTTGTCTCATTTAAAGTTTAAACTTTTAATCCAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
* * ** * * *
26388 GAAATCAAAGCATTAATAACATGTATCCCAAAAAGGAGAATGTGTTTTGGCTACCTAATCGTGAA
131 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG-G
* * * * **
26453 AAAGTATGAAGATTTTTATAAGAATCCATGTTTGTTTCATTTAAC-TCATGAACTCAATTTATAA
195 AAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACAT-ACGAACTCAAAATATAA
* * *
26517 GGAAAATCGTGGCAAGAAAAGCTTTTCTTGCATAACCAATGCACCAATATTGTGCCTCCCAATGA
259 GGAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGA
* * * * * * *
26582 AGATAATGTGTTCATGGGGCCCAATCACTGAAAGAATTGAGATTTTATCATAGATCCATGTTTGT
324 AGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGT
* * * *
26647 CTCATTTAAAGTATAAATTTTTATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCCCACTAAATC
389 CTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATC
* *
26712 AAAGCATTAATAACGTGTATCCCACAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAAT
454 AAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAAT
**
26777 GAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAATTTATAAGGAAAATC
519 GAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATC
* * * ** *
26842 ATGGCGAGAAAAGCTTTTCTTGCAAAACCAATGCACCAATATTGTGCCTCC
584 GTGGCAAGGAAAGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* * * * *
26893 CGATGAAGATAACGTGTTCATGAG-GCCCAATCACTGAAAGAATTGAGATTTTATCGTAGATCCA
1 CAATGAAGATAACGTGTTTATG-GTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCA
* * *
26957 TGTTTGTCTCATTTAAAGTATAAAATTTGATTTTAAGGAAAATGGTAGAGAAAAAACTTTTCTCA
65 TGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCA
* * * *
27022 CGAAATCAAAGCATTAATATCGTGTATCCCACAAAGGAGAATATGTTTTGTTTGCCTAGTCATGG
130 TGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGG
27087 AAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAG
195 AAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAG
* * * * * * * *
27152 GAAAATTGTGGCAAGAAAAGCTTTTCTTACAAAGCTAATGCGTCAATTTTCTGTATCCCAATGAA
260 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAA
*
27217 GATAACGTGTTTATGGTGCCCAATCAATT-AAAGAATGGAGATTTTTTTGTAGATCCATGTTTGT
325 GATAACGTGTTTATGGTGCCCAATC-ATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGT
* * *
27281 CTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGCAGAGAAAAAACTTTTCACATGAAATC
389 CTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATC
* **
27346 AAAGCATTAATATCGTGTATCCTAAAAAGGAGAATGTGTTTTGTTTGCCTAATCCCGGAAAGAAT
454 AAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAAT
* *
27411 GAAGATTGTTATAAGAATCCATGTTTGTTTCATCTAATATACGAACTCAAAATATAAGGAAAATC
519 GAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATC
* * * *
27476 ATTGCAA-GAAGAGCTTTTCTTGCAAAACCAATACGTCAATTTTGTGCATCC
584 GTGGCAAGGAA-AGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* *
27527 CAATGAAGATAACGTATTTATGGTGCCCAATCATTGAAAGAATGGTGA-TTTTTCGTAGATCCAT
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
** * * * * *
27591 GTTTGTCTCATTTAAAGTATAAAC-TTTATTCTGCGGAAGACGATTGAGAAAAAAACTTTTCTTA
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAG-AAAAAACTTTTCTCA
* * ** *
27655 TGAAATAAAAGCATTAATA-CTGTGTAT-CCAAATAAGGAGAACGCATTTTGGTTGCCTAATCAT
130 TGAAATCAAAGCATTAATATC-GTGTATCCCAAA-AAGGAGAATGTGTTTTGTTTGCCTAATCAT
* * * * * * *
27718 GGAAAGAATGAGGATTATTATAAGAATCTAGGCTTGTTTCATTTAACATACGAACTTAAAATATG
193 GGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATA
* * * * **
27783 AGGAAAATCGTGGCAAGGAAAGCTTTTCTTGCAAAACCAATTCGTGAATATTGTGCATCCCAAAC
258 AGGAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATG
* * * * *
27848 AAGATAATGTGTTTATGGGGCCCAATCACTGAAAGAGTGGAGATTTTTTCGTAGATCAATGTTTG
323 AAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTG
* * * * *
27913 TCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAACGATTGAGAAAAAAACTTTTCTTATGAAA
388 TCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAG-AAAAAACTTTTCTCACGAAA
* * * ***
27978 TCAAAGCATTAATATCGTGTAT-CCAAATAAGGAGAACGCGCTTTGGCCGCCTAATCATGGAAAG
452 TCAAAGCATTAATATCGTGTATCCCAAA-AAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAG
* * * * * * *
28042 AATAAAGATTATTGTAAGAATCCATGCTTGTTTCGTTTAACATACGAACTCAAAATATGAGGACA
516 AATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAA
* * *
28107 ATCATGGAAAGGAAAGCTTTTCTTGCAAAACCAATGCGTCAACATTGTGCATCC
581 ATCGTGGCAAGGAAAGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* * * * *
28161 CAATGAAGATAACATGTTTATGGGGCCCACTCACTGAAAGAAAGGAGATTTTTTCGTAGATCCAT
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* * * *
28226 ATTTGTCTCATTTAAAGTATAAACTTTTTTTC-AATGGAAAATGGCATG-GAAACAACTTTTCTC
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAA-GGAAAATGGTA-GAGAAAAAACTTTTCTC
* * * *
28289 ATGAAATCAAAGCATTAATAACGTCTATCCCAAAAAGGAGAATGTGTTTTGGTTGCCTAGTCATG
129 ATGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG
* * * * * * * * **
28354 AAAAGTATGAAGATTTTTATAAGAATCCATGTTTGCTTCATTTAAAACACGAACACAATTTATAA
194 GAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAA
* *
28419 GGAAAATCGTGGCAAGAAAAGCTTTTCTTGCATAACCGATACGC-T-AATATTGTGCATCCCAAT
259 GGAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACC-A-ATGCATCAATATTGTGCATCCCAAT
* * * * ** * *
28482 GAAGATAATGTGTTCATGGGGCCCAATCACTGAAAGAATTAAGATTTTTTCATAGATCCAAGTTT
322 GAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTT
* * * * *
28547 GTCTCATTTAAAGTATAAACTTTTATTTTAAGGAAAGTGGTAGAGAAAACACTTTTCTTATGAAA
387 GTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAA
* ** * * * *
28612 TCAAAGCATTAATACCGTGTAT-CCAAATAAGGAGAGCGCGCTTTGGTTGCCTAATCATGAAAAG
452 TCAAAGCATTAATATCGTGTATCCCAAA-AAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAG
* * * * * ** *
28676 TATGAAGATTTTTATAAGAATCCATGTTTGTTTCATTTAACACATGAACTCAATTTATAGGGAAA
516 AATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAA
* * * *
28741 ATCGTGGCGAGAAAAGCTTTTCTTGCATAACCAATGCGCCAATATTGTGCATCC
581 ATCGTGGCAAGGAAAGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* * * * * * *
28795 CAATGAAGATAAAGTGTTCATGGGGCCCAATCACTGAAAGAATTGAGATTTTTTCATAGATCAAT
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* *
28860 GTTTGTCTCATTTAAAGTATAAACTTTTAATCTAAGGAAAATGGTAGAGAAAAAACTTGTCTCAT
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
* * ** * *
28925 GAAATCAAAGCATTAATAACATGTATCCCAAAAAGGAGAATGTGTTTTGGCTGCCTAATCGTGAA
131 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
* * * * **
28990 AAGTACGAAGATTTTTATAAGAATCCATGTTTGTTTCATTTAAC-TCACGAACTCAATTTATAAG
196 AAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACAT-ACGAACTCAAAATATAAG
** * *
29054 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCGTAACCAATGCACCAATATTGTGCCTCCCAATGAA
260 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAA
* * * * *
29119 GATAACGTGTTCATGGGGCCCAATCACTGAAAGAATTGAGATTTTTTTGTAGATCCATGTTTGTC
325 GATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTC
* * * * *
29184 TCATTTAAAGTATAAAATTTTATTTTAAGGAAAATGGTAGACAAAAAATTTTTCTCACAAAATCA
390 TCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
** * *
29249 GGGCATTAATATCGTGTATCCCAAAAAGGAGAAGGTGTTTTGTTTGCCTAATCGTGGAAAGAATG
455 AAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
*
29314 AAGATTATTATAAGCATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCG
520 AAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCG
* * * * *
29379 TGGCAAGAAAAGCTTTTCTTACAAAACCAATGCGTCAATTTTCTGTATCC
585 TGGCAAGGAAAGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* * *
29429 CAATGAAGATAACATGTTTATTGTGCCCAATCATTGAAAGAATGGAGATTTTTTCAT-GATCCAT
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* * *
29493 GTTTGTCTCATTTACAGTATAAACTTTTATTCTAAGGAAAGTGGTACAGAAAAAACTTTTCTCAT
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
* *
29558 GAAATCAAAGCATTAATATTGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGAA
131 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
* *
29623 AAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACAAACTCAAAACATAAGG
196 AAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGG
* * * *
29688 AAAATCGTGGCAAGAAAAGCTTTTCTTACAAAACCAATGCGTCAAT-TCTCTGTATCCCAATGAA
261 AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATAT-TGTGCATCCCAATGAA
*
29752 GATAACGTGTTTATCGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGT-GATCCATGTTTGTC
325 GATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTC
* * * *
29816 TCATTTACAGTATAAAGTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCACATGAAATCA
390 TCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
*
29881 AAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAAAG
455 AAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATG
* *
29946 AAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATATGAACTCAAAATATAAGGAAAATCA
520 AAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCG
* * * * *
30011 TGGCTA-GAAGAGCTTTTCTTGCAAAACTAATGCTTCAATTTTGTGTATCC
585 TGGCAAGGAA-AGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* * *
30061 CAATGAGGATAACGAGTTTATGGTGCCCAATCATTGAAAGAATGGTGATTTTTTCGTAGATCCAT
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* * * * * *
30126 TTTTGTCTCATTTAAAGTATAAAATTTTATTTTACGGAAAATGGTAGAGAAAAAACTTTTTTCAC
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
30191 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
131 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
* * *
30256 AAGCAA-GAAGATTGTTATAAGAATCCATGTTTTTTTCATCTAACATATGAACTCAAAATATAAG
196 AAG-AATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAG
* * * * * * * *
30320 GAAAATCATGGCTAGAAGAGCTTTTCTTGCAAAACTAATGCGTCAATTTTGTGTATCCCAATGAG
260 GAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAA
* * *
30385 GATAACGTGTTTATGGTGCCCAATCATAGAAAGAATGGTGATTTTTTCATAGATCCATGTTTGTC
325 GATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTC
* * *
30450 TCATTTAAAGTATAAACTCTTACTCTAAGGAAAATGGCAGAGAAAAAACTTTTCTCACGAAATCA
390 TCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCA
** * * * *
30515 AAGCATTAATATCGTGCCTCCCAAAAAGGGGAATGTGTTTTAG-TTGCCTAATCGTGAAAAGTAT
455 AAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTT-GTTTGCCTAATCATGGAAAGAAT
* * * * *
30579 GAAGATTTTTATAAGAATCCATGTTTGTTTCATTTAAAATTCGAACTCAAATTATAAGGAAAATC
519 GAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATC
* * *
30644 GTGGCAAGAAAAGCTTTTCTTGCATAACCAATGCGCCAATATTGTGCATCC
584 GTGGCAAGGAAAGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
* * * * * * *
30695 CAATGAAGATAAAGTGTTCATGGGGCCCAATCACTGAAAGAATTGAGATTTTTTCATAGATCAAT
1 CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
* * ** * *
30760 GTTTGTCTCATTTAAAGTTTAAACTTTTAATCCGAGGAAAAAGGCAGAGAAAAAACTTTTCTCAT
66 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
* * * * ** * ** *
30825 GAAATCAAAGCATTAGTAACATGTATCCCAAAAAAGAGAATGTGTTTTGGCTACCTAATTGTGAA
131 GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATG-G
* * * **
30890 AAAGTATGAAGATTTTTATAAGAATCCATGTTTGTTTCATTTAAC-TCACGAACTCAATTTATAA
195 AAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACAT-ACGAACTCAAAATATAA
*
30954 GGAAAATCGTGGCAAGAAAAGCTTTTCTTGCATAACCAATG
259 GGAAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATG
30995 TCGCAACGTG
Statistics
Matches: 14864, Mismatches: 1934, Indels: 928
0.84 0.11 0.05
Matches are distributed among these distances:
591 2 0.00
592 249 0.02
593 5 0.00
594 1 0.00
596 1 0.00
597 2 0.00
598 1 0.00
599 1 0.00
600 1 0.00
603 8 0.00
604 525 0.04
605 414 0.03
606 4 0.00
607 250 0.02
608 16 0.00
609 2 0.00
610 3 0.00
611 15 0.00
612 11 0.00
613 281 0.02
614 4 0.00
615 10 0.00
616 3 0.00
617 14 0.00
618 686 0.05
619 3849 0.26
620 47 0.00
621 17 0.00
622 3 0.00
623 17 0.00
624 15 0.00
625 2 0.00
626 2 0.00
627 7 0.00
628 73 0.00
629 84 0.01
630 25 0.00
631 12 0.00
632 336 0.02
633 1044 0.07
634 4777 0.32
635 967 0.07
636 26 0.00
637 3 0.00
638 3 0.00
639 195 0.01
640 4 0.00
641 6 0.00
643 1 0.00
644 217 0.01
645 58 0.00
646 2 0.00
647 22 0.00
648 9 0.00
649 21 0.00
650 5 0.00
651 9 0.00
653 3 0.00
655 7 0.00
656 8 0.00
657 6 0.00
658 5 0.00
659 11 0.00
660 1 0.00
661 1 0.00
664 2 0.00
669 1 0.00
670 2 0.00
671 2 0.00
672 3 0.00
676 8 0.00
677 5 0.00
678 11 0.00
679 2 0.00
680 16 0.00
681 10 0.00
682 13 0.00
683 13 0.00
684 9 0.00
685 1 0.00
686 6 0.00
687 2 0.00
688 11 0.00
689 7 0.00
690 18 0.00
691 9 0.00
692 22 0.00
693 2 0.00
694 2 0.00
697 2 0.00
698 13 0.00
699 12 0.00
700 3 0.00
701 1 0.00
704 1 0.00
705 171 0.01
706 1 0.00
708 5 0.00
709 7 0.00
711 3 0.00
713 1 0.00
715 1 0.00
716 1 0.00
718 8 0.00
719 4 0.00
720 44 0.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.32
Consensus pattern (634 bp):
CAATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCAT
GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCAT
GAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGA
AAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGG
AAAATCGTGGCAAGAAAAGCTTTTCTTGCAAAACCAATGCATCAATATTGTGCATCCCAATGAAG
ATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCT
CATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAACTTTTCTCACGAAATCAA
AGCATTAATATCGTGTATCCCAAAAAGGAGAATGTGTTTTGTTTGCCTAATCATGGAAAGAATGA
AGATTATTATAAGAATCCATGTTTGTTTCATCTAACATACGAACTCAAAATATAAGGAAAATCGT
GGCAAGGAAAGCTTTTCTTGCAAAACCAATGCGTCAATATTGTGCATCC
Found at i:14767 original size:86 final size:86
Alignment explanation
Indices: 14622--14795 Score: 321
Period size: 86 Copynumber: 2.0 Consensus size: 86
14612 TGTAAGGAAA
* *
14622 ATCATGGCAAGAAGAGCTTTTCCTGCAAAACCAATGCGTCAATGAATATAACCTGTTTATGGTGC
1 ATCATGGCAAGAAGAGCTTTTCCTGCAAAACCAAAGCGTCAATGAATATAACCTATTTATGGTGC
14687 CGAATCATTGACTGAATGGAG
66 CGAATCATTGACTGAATGGAG
*
14708 ATCATGGCAAGAAGAGCTTTTCTTGCAAAACCAAAGCGTCAATGAATATAACCTATTTATGGTGC
1 ATCATGGCAAGAAGAGCTTTTCCTGCAAAACCAAAGCGTCAATGAATATAACCTATTTATGGTGC
14773 CGAATCATTGACTGAATGGAG
66 CGAATCATTGACTGAATGGAG
14794 AT
1 AT
14796 TTTTTCATAG
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 85 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (86 bp):
ATCATGGCAAGAAGAGCTTTTCCTGCAAAACCAAAGCGTCAATGAATATAACCTATTTATGGTGC
CGAATCATTGACTGAATGGAG
Found at i:15132 original size:159 final size:158
Alignment explanation
Indices: 14964--15451 Score: 424
Period size: 159 Copynumber: 3.1 Consensus size: 158
14954 TATAATAAGA
*
14964 ATCCATGTTTGTTTTATCTAACGTACAAACAAAAAATTTAAGGAAAATCGTGGCAAGAAAAGCTC
1 ATCCATGTTTGTTTTATCTAACGTACAAAC-AAAAATTTAAGGAAAATCGTGGCAAGAAAAGCTT
*
15029 TTCTTGCAAAACCAATGCATCAACTTTCTATATCCCGATGAAGATAACGTGTTTATGGTGCCCAA
65 TTCTTGCAAAACCAATGCATCAACTTTCTGTATCCCGATGAAGATAACGTGTTTATGGTGCCCAA
15094 TCATTGAAAGAATGGAGATTATTTCGTAG
130 TCATTGAAAGAATGGAGATTATTTCGTAG
* ** **** *
15123 ATCCATGTTTGTCTCTT-T-TAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAG-AA-AAAA
1 ATCCATGTTTGT-T-TTATCTAACGTACAAACAAAAATT-TAAGGAAAATCGT-G-GCAAGAAAA
* * * * ** * **
15184 -CTTTTC-T-CATGAAATCAAAGCATTAA-TATCGTGTATCCC-AAAAAGGAAAATATGTTT-TG
61 GCTTTTCTTGCA--AAACCAATGCATCAACTTTC-TGTATCCCGATGAA-GATAACGTGTTTATG
* * * * * *
15243 TTTGCCTAATCATGGAAAGAATGAAGATTATAAT--AAG
122 -GTGCCCAATCATTGAAAGAATGGAGATTAT-TTCGTAG
* * * * * * * * * *
15280 AATCCTTGTTTGCTTCATCTAACGTACGAACTCAAAATGTGAGGACAATCATGGCAAGAAGAGCT
1 -ATCCATGTTTGTTTTATCTAACGTACAAAC-AAAAATTTAAGGAAAATCGTGGCAAGAAAAGCT
* *
15345 TTTCTTGCAAAACCAATGCATGAACTTTCTGTATCCCGATGAAGATAACGTGTTTATCGTGCCCA
64 TTTCTTGCAAAACCAATGCATCAACTTTCTGTATCCCGATGAAGATAACGTGTTTATGGTGCCCA
*
15410 ATCATTGAAAGAGTGGAGATTATTTCGTAG
129 ATCATTGAAAGAATGGAGATTATTTCGTAG
15440 ATCCATGTTTGT
1 ATCCATGTTTGT
15452 CTCATTTAAA
Statistics
Matches: 243, Mismatches: 61, Indels: 50
0.69 0.17 0.14
Matches are distributed among these distances:
156 4 0.02
157 16 0.07
158 93 0.38
159 110 0.45
160 15 0.06
161 5 0.02
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.32
Consensus pattern (158 bp):
ATCCATGTTTGTTTTATCTAACGTACAAACAAAAATTTAAGGAAAATCGTGGCAAGAAAAGCTTT
TCTTGCAAAACCAATGCATCAACTTTCTGTATCCCGATGAAGATAACGTGTTTATGGTGCCCAAT
CATTGAAAGAATGGAGATTATTTCGTAG
Found at i:15271 original size:158 final size:156
Alignment explanation
Indices: 14786--15590 Score: 618
Period size: 158 Copynumber: 5.1 Consensus size: 156
14776 ATCATTGACT
* * *
14786 GAATGGAGATTTTTTCATAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTCTTCTAAGGAA
1 GAATGAAGATTATTTC-TAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAA
* * * *
14851 AATAGTTGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGA
65 AATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAAA-GAAA
14916 ATATGTTTTGTTTGCCTAATCATGGAAA
129 ATATGTTTTGTTTGCCTAATCATGGAAA
* * * * * * * * ****
14944 GAATGAATATTATAAT-AAGAATCCATGTTTGTTTTATCTAACGTACAAACAAAAAATT-TAAGG
1 GAATGAAGATTAT-TTCTAG-ATCCATGTTTGTCTCATTTAAAGTATAAAC-TTTTATTCTAAGG
* * * * * * *
15007 AAAATCGT-G-GCAAGAAAAGCTCTTCT--TGCAAAACCAATGCATCAACTTTC-TATATCCCGA
63 AAAATGGTAGAG-AA-AAAA-CTTTTCTCATG--AAATCAAAGCATTAA-TATCGTGTATCCC-A
** * ** * * *
15067 TGAAGATAACGTGTTTATG-GTGCCCAATCATTGAAA
121 AAAAGAAAATATGTTT-TGTTTGCCTAATCATGGAAA
* * *
15103 GAATGGAGATTATTTCGTAGATCCATGTTTGTCTCTTTTAAAGTGTAAACTTTTATTCTAAGGAA
1 GAATGAAGATTATTTC-TAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAA
15168 AATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAAA
65 AATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAAA-GAAA
15233 ATATGTTTTGTTTGCCTAATCATGGAAA
129 ATATGTTTTGTTTGCCTAATCATGGAAA
* * * * * ** *** * * *
15261 GAATGAAGATTATAAT-AAGAATCCTTGTTTG-CTTCATCTAACGTACGAACTCAAAATGTGAGG
1 GAATGAAGATTAT-TTCTAG-ATCCATGTTTGTC-TCATTTAAAGTATAAACTTTTATTCTAAGG
* * * * * * *
15324 ACAATCATGGCA-AG-AAGAGCTTTTCT--TGCAAAACCAATGCATGAACTTTC-TGTATCCCGA
63 A-AA--ATGGTAGAGAAAAAACTTTTCTCATG--AAATCAAAGCATTAA-TATCGTGTATCCC-A
** * ** * *
15384 TGAAGATAACGTGTTTATCG--TGCCCAATCATTGAAA
121 AAAAGAAAATATGTTT-T-GTTTGCCTAATCATGGAAA
* * *
15420 GAGTGGAGATTATTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAA
1 GAATGAAGATTATTTC-TAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAA
*
15485 AATGGTAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTAATATCGTGTATCCCAAAAAAGAAA
65 AATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCC-AAAAAGAAA
15550 ATATGTTTTGTTTGCCTAATCATGGAAA
129 ATATGTTTTGTTTGCCTAATCATGGAAA
15578 GAATGAAGATTAT
1 GAATGAAGATTAT
15591 AATAAGAATC
Statistics
Matches: 479, Mismatches: 125, Indels: 86
0.69 0.18 0.12
Matches are distributed among these distances:
156 7 0.01
157 25 0.05
158 214 0.45
159 198 0.41
160 28 0.06
161 7 0.01
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (156 bp):
GAATGAAGATTATTTCTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAA
ATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGAAAAT
ATGTTTTGTTTGCCTAATCATGGAAA
Found at i:22755 original size:158 final size:157
Alignment explanation
Indices: 22276--22760 Score: 394
Period size: 158 Copynumber: 3.1 Consensus size: 157
22266 ACTTTTATTC
22276 TAAGGAAAATGGTAGAGAAAAAACTGTTCTCAC--GAAATCAAAGCATTAATATCGTGTAT-CCA
1 TAAGGAAAATGGTAGAGAAAAAACT-TT-TCACTTGAAATCAAAGCATTAATATCGTGTATCCCA
* * * * * *
22338 AAAAAGGAGAATGTTTTTTGTTTGCCTAATCATGGAAAGAATAAAGATTATTATAAGAATCCTTG
64 AAGAA-GAGAATGTGTTTTG-TTGCCTAAACATGGAAAGAATGAAGAATATTATAAGAATCCATG
*
22403 TTTTTTTCATCTAACATACGAACTCAAAATA
127 TTTGTTTCATCTAACATACGAACTCAAAATA
* * * * * ** * * * **
22434 TAAGGAAAATCATGGCA-AG-AAAAGCTTTTC-TTTCAAAACCAATTCGTCAATA-CTATGCCTC
1 TAAGG-AAA--ATGGTAGAGAAAAAACTTTTCACTT-GAAATCAAAGCATTAATATC-GTGTATC
* * * * * * * * * * **
22495 CCAATGAAGATAACGTGTTTATGGTGCCCAAACATTGAAAGAATGGAGACTTTTCTCTTG-ATCC
61 CCAAAGAAGAGAATGTGTTT-TGTTGCCTAAACATGGAAAGAATGAAGAATATTAT-AAGAATCC
* * * ** *** * *
22559 ATGTTTGTCTCTTTTAA-AGTATAAACTTTTATTC
124 ATGTTTGTTTCATCTAACA-TACGAACTCAAAATA
22593 TAAGGAAAATGGTAGAGAAAAAACTTTTCACTTGAAATCAAAGCATTAATATCGTGTATCCCAAA
1 TAAGGAAAATGGTAGAGAAAAAACTTTTCACTTGAAATCAAAGCATTAATATCGTGTATCCCAAA
* *
22658 GATGAGAATGTGTTTTGCTTGCCTAACCATGGAAAGAATGAAGAATATTATAAGAATCCATGTTT
66 GAAGAGAATGTGTTTTG-TTGCCTAAACATGGAAAGAATGAAGAATATTATAAGAATCCATGTTT
*
22723 GTTTCATCTAACATACGAACTCAAAATG
130 GTTTCATCTAACATACGAACTCAAAATA
22751 TAAGGAAAAT
1 TAAGGAAAAT
22761 CATGGCAGGA
Statistics
Matches: 233, Mismatches: 76, Indels: 36
0.68 0.22 0.10
Matches are distributed among these distances:
156 5 0.02
157 7 0.03
158 115 0.49
159 90 0.39
160 11 0.05
161 5 0.02
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (157 bp):
TAAGGAAAATGGTAGAGAAAAAACTTTTCACTTGAAATCAAAGCATTAATATCGTGTATCCCAAA
GAAGAGAATGTGTTTTGTTGCCTAAACATGGAAAGAATGAAGAATATTATAAGAATCCATGTTTG
TTTCATCTAACATACGAACTCAAAATA
Found at i:23215 original size:159 final size:156
Alignment explanation
Indices: 22799--30786 Score: 2723
Period size: 159 Copynumber: 50.6 Consensus size: 156
22789 CCAATGCGTT
* * * *** *
22799 AATGAATATAACCTGTTTATGGTGCCGAATCAGCAAAAGAATGGAGATTTTTTCGTAGATCAATG
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTTTT--TAGATCCATG
* *
22864 TTTGTCTCATTTAAAGTATAAACTTGTAA-TCTCAGGAAAATGGTAGAG-AA-AAAAG-TTTTCT
64 TTTGTCTCATTTAAAGTATAAACTT-TAATTCTAAGGAAAATCGT-G-GTAAGAAAAGCTTTTCT
** * * *
22925 CACGAAATCAAAACATTAA-TATCGTGTA-CCC
126 TGCAAAACCAAAGCA-TAATTATC-TGTATCCC
* * ** ** * * ** * *
22956 AA-AAAGGAGAATATGTTT-TCTTTGCCTAATCATGGAAAGAATGAAGATTATAATAAGAATCCT
1 AATGAA-GATAACGTGTTTAT-GGTGCCTAATCATTGAAAGAATGGAGATT-TTTTTAG-ATCCA
* * * ** *** * * *
23019 TGTTTGTTTCATCTAACGTACGAACACAAAATGTAAGGAAAATCGTGGTAAGAAAAGCTCTTCTT
62 TGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTAAGAAAAGCTTTTCTT
* * *
23084 GCAAAACCAATGCATCGATTTTCTGTATCCC
127 GCAAAACCAAAGCAT-AATTATCTGTATCCC
* * * *
23115 AATGAAGATAACATGTTTATGGTGCCCAATCATTTAAAGAATGGAGATTTTTTCGTAGACCCATG
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTTTT--TAGATCCATG
* * * * *
23180 TTTGTCTCATTTAAAGTGTGAACTTTTATTCTAAGGAAAA---TGGTAGAGAAAAAACTTTTCTC
64 TTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTA-AG-AAAAGCTTTTCTT
* * *
23242 ACGAAATCAAAGCATTAA-TATCGTGTATCCC
127 GCAAAACCAAAGCA-TAATTATC-TGTATCCC
* * * * * * * * * *
23273 AA-AAAGAAGAATGT-TTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCT
1 AATGAAG-ATAACGTGTTTATG-GTGCCTAATCATTGAAAGAATGGAGATT-TTTTTAG-ATCCA
* * ** ** * * * *
23336 TGTTTGTTTCATCTAACA-TACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCT
62 TGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTGGTAAGAAAAGCTTTTCT
* ** * * **
23400 TTCAAAACCAATTCGTCAA-TACTATGCCTCCC
126 TGCAAAACCAAAGCAT-AATTA-TCTGTATCCC
* *
23432 AATGAAGATAACGTGTTTATGGTGCCCAAACATTGAAAGAATGGAGACTTTTCTGTT-GATCCAT
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGA-TTTT-T-TTAGATCCAT
* * *
23496 GTTTGTCTCTTTTAAAGTATAAACTTTTATTCTAAGGAAAA---TGGTAGAGAAAAAACTTTTCT
63 GTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTA-AG-AAAAGCTTTTCT
*
23558 AATG--AAATCAAAGCATTAA-TATCTTGTATCCC
126 --TGCAAAACCAAAGCA-TAATTATC-TGTATCCC
* * * * * *
23590 AAAGAGGAAAACGTGTTT-TGGATGCTTAATCATGGAAAGAAT-GAGGATTTTTATAAGAATCCA
1 AATGAAGATAACGTGTTTATGG-TGCCTAATCATTGAAAGAATGGA-GATTTTT-TTAG-ATCCA
* * * *** *** * * *
23653 TGCTTGTTTCATTTAACA-TATGAACACAAAAAATGAGGAAAATCGTGGCAAGGAAAGCTTTTCT
62 TGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTGGTAAGAAAAGCTTTTCT
* * *
23717 TACAAAACCAATGCGTCAA-TAT-TGTGCATCCC
126 TGCAAAACCAAAGCAT-AATTATCTGT--ATCCC
* * * * * * *
23749 AATGAAGATAACGTCTTCATGGGGCCCAATCACTAAAAGAATTGAGATTTTTTCATAGATCCATG
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTTTT--TAGATCCATG
* * * *
23814 TTTGTCTCATTTAAAGTATAAACTTTTATTTTAAGGAAAA---TGGTAGAGAAAAAACTTTTCTC
64 TTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTA-AG-AAAAGCTTTTCTT
* * *
23876 ACGAAATCAAAGCATTAA-TATCTTGTATCCC
127 GCAAAACCAAAGCA-TAATTATC-TGTATCCC
* * * * * * * * * * *
23907 AAAGAGGAGAATGTGTTT-TGTTTGCCTAATCATGGAAAGAATGAATATTATTATAAGAATTCAT
1 AATGAAGATAACGTGTTTATG-GTGCCTAATCATTGAAAGAATGGAGATT-TTTTTAG-ATCCAT
* * * ** ** * * * * *
23971 GTTTGTTTCATCTAAAATACGAACTCAAAATGTAAGGAAAATCATGGCAAGAAGAGCTTTTCTTG
63 GTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTAAGAAAAGCTTTTCTTG
*
24036 CAAAA-C----C---A--A--TGCAT--C
128 CAAAACCAAAGCATAATTATCTGTATCCC
* * * * *
24051 AATGAATATAACCTGTTTATGGTGCCAAATCATCGAAAGAATGGAGATTTTTTCATAGATCCAAG
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTTTT--TAGATCCATG
* * * * *
24116 TTTGTCACATTTAAAGTATAAACTTTTATTTTACGGAAAA---TGGTAGAGAAAAAACTTTTCTA
64 TTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTA-AG-AAAAGCTTTTCT-
* * *
24178 ATG--AAATCAAAGCTTGAA-TATCCTGTAACCC
126 -TGCAAAACCAAAGCAT-AATTAT-CTGTATCCC
* * ** ** * * ** * *
24209 AAAG-AGTAAAACGTGTTT-TGGATGTGTAATCACGGAAACAATGAAGATTATAATAAGAATCCT
1 AATGAAG-ATAACGTGTTTATGG-TGCCTAATCATTGAAAGAATGGAGATT-TTTTTAG-ATCCA
* * * ** *** * * * *
24272 TGTTTGTTTCATCTAACGTACGAACCCAAAATGTAAGGAAAATCGTGGCAAGAAAAGCTCTTCTT
62 TGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTAAGAAAAGCTTTTCTT
*
24337 GCAAAACCAACGCATCAA--A----TATCCC
127 GCAAAACCAAAGCAT-AATTATCTGTATCCC
* * *
24362 AATGAAGATAGCATGTTTATGGTGCCGAATCATTGAAAGAATGGAGATTTTTTCGTAGATCCATG
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTTTT--TAGATCCATG
* *
24427 TTTGTCTCATTTAAAGTATAAACTTGT-ATTCTCAGGAAAATGGTAGCG-AA-AAAAG-TTTTCT
64 TTTGTCTCATTTAAAGTATAAACTT-TAATTCTAAGGAAAATCGT-G-GTAAGAAAAGCTTTTCT
** *
24488 CACAAAATCAAAGCATTAA-TATCGTGTATCCC
126 TGCAAAACCAAAGCA-TAATTATC-TGTATCCC
* * ** * * * *** * *
24520 AA-AAAGGAGAATATGTTT-TGTTTGCCTAATCATGGAAAGAATGAAGATTAGAATAAGAGTCCT
1 AATGAA-GATAACGTGTTTATG-GTGCCTAATCATTGAAAGAATGGAGATT-TTTTTAGA-TCCA
* * * ** *** * * * **
24583 TGTTTGTTTCATCTAACGTACGAACACAAAATGTAAGGAAAATCGTGGCAAGAAAAGCCCTTCTT
62 TGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTAAGAAAAGCTTTTCTT
* *
24648 GCAAAACCAATGCATCAATTTTCTGTATCCC
127 GCAAAACCAAAGCAT-AATTATCTGTATCCC
* * * *
24679 AATCAAGATAACATGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGTAGACCCATG
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTTTT--TAGATCCATG
* *
24744 TTTGTCTCATTTAAAGT-TCAAACTTTTATTAAACTTTTATTCTAGGGAAA--GTGGTAGAGAAA
64 TTTGTCTCATTTAAAGTAT-AAAC---T-TT-AA-TTCTA----AGGAAAATCGTGGTA-AG-AA
* * *
24806 AAACTTATC-TG-ATGAAATCAAAGCATTAA-TATCGTGTATCCC
116 AAGCTTTTCTTGCA--AAACCAAAGCA-TAATTATC-TGTATCCC
* * * * * * *
24848 AA-AAAGGAGAATGTGTTT-TGTTTGCCTAATCA-TGAAAAGAATGAAGATTATTATAAGAATCC
1 AATGAA-GATAACGTGTTTATG-GTGCCTAATCATTG-AAAGAATGGAGATT-TTTTTAG-ATCC
* * ** * ** *
24910 ATGTTTGTTTCATCTAACA-TACGAAC-TCAAAACATAAGGAAAATCGTGGCAAGAAAAGCTTTT
61 ATGTTTGTCTCATTTAA-AGTATAAACTTTAATTC-TAAGGAAAATCGTGGTAAGAAAAGCTTTT
* * * *
24973 CTTACAAAACCAATGCGTCAATTCTCTGTATCCC
124 CTTGCAAAACCAAAGCAT-AATTATCTGTATCCC
* * *
25007 AATGAAGATAACATGTTTATTGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGT-GATCCATG
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTTTT--TAGATCCATG
* * * *
25071 TTTGTCTCATTTACAGTAGAAACTTTTATTCTAAGGAAAA---TGGTAGAGAAAAAACTTTTC--
64 TTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTA-AG-AAAAGCTTTTCTT
* *
25131 ACATGAAATCAAAGCATTAA-TATCGTGTATCCC
127 GCA--AAACCAAAGCA-TAATTATC-TGTATCCC
* * ** * * * * * * *
25164 AA-AAAGGAGATTGTGTTT-TGTTTGCCTAATCATGGAAAGAAAGAAGATTATTATAAGAATTCA
1 AATGAA-GATAACGTGTTTATG-GTGCCTAATCATTGAAAGAATGGAGATT-TTTTTAG-ATCCA
* * * ** ** * * *
25227 TGTTTATTTCATCTAACA-TACGAACTCAAAATGTAAGGAAAATCGTGGTAAGAAGAGCTTTTCT
62 TGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTGGTAAGAAAAGCTTTTCT
*
25291 TGCAAAA-C----C--AA-T-GC-G--T--C
126 TGCAAAACCAAAGCATAATTATCTGTATCCC
* * * *
25308 AATGAATATAACTTGTTTATGGTGCCGAATCATT-AACTGAATGGAGATTTTTTCGTAGATCCAT
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAA-AGAATGGAGATTTTTT--TAGATCCAT
* *
25372 GTTTGTCTCATTTAAAGTATAAACTTGT-ATTCTAAGGAAAA---TGGTAGAGAAAAAACCTTTC
63 GTTTGTCTCATTTAAAGTATAAACTT-TAATTCTAAGGAAAATCGTGGTA-AG-AAAAGCTTTTC
** * *
25433 TCACGAAATCAAAGCATTAA-TATCGTGTATCCC
125 TTGCAAAACCAAAGCA-TAATTATC-TGTATCCC
* * ** * * * * * ** *
25466 AA-AAAGGAGAATATGTTT-TGTTTGCCTAATCCTGGAAAGAATGAATATTATAATAAGAATCCA
1 AATGAA-GATAACGTGTTTATG-GTGCCTAATCATTGAAAGAATGGAGATT-TTTTTAG-ATCCA
* * * * * *** * * * * *
25529 TGTTTGTTTTATCTAAAGCACAAACACAAAATGTAAGGAAAATCTTGGCAAGAAAAGCTCTTCTT
62 TGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTAAGAAAAGCTTTTCTT
*
25594 GCAAAACCAATGCATCAACTT-TCTGTATCCC
127 GCAAAACCAAAGCAT-AA-TTATCTGTATCCC
* * *
25625 GATGAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTTCGTAGATCCATG
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATT-TTT-TTAGATCCATG
* * * *
25690 TTTGTTTCATTTAAAGTATAAACTTTTATTTTAAGGAAAA---TGGTAGAGAAAAAACTTTTC-T
64 TTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTA-AG-AAAAGCTTTTCTT
* *
25751 -CATGAAATCAAAGCATTAA-AATCGTGTATCCC
127 GCA--AAACCAAAGCA-TAATTATC-TGTATCCC
* * * * * * * * *
25783 AA-AAAGGAGAATGTGTTT-TGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATTCA
1 AATGAA-GATAACGTGTTTATG-GTGCCTAATCATTGAAAGAATGGAGATT-TTTTTAG-ATCCA
* * * ** ** * * * *
25846 TGATTGTTTCATCTAACA-TACGAACTCAAAATATAAGGAAAATCATGGCT-AGAAGAGCTTTTC
62 TGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTGG-TAAGAAAAGCTTTTC
* * * *
25909 TTGCAAAACTAATGCATCAATTTTGTGTATCCC
125 TTGCAAAACCAAAGCAT-AATTATCTGTATCCC
* * * *
25942 AATGAGGATAACGTGTTTATGGTGCCCAATCATAGAAAGAATGGTGATTTTTTCATAGATCCATG
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTTTT--TAGATCCATG
* *
26007 TTTGTCTCATTTAAAGTATAAACTCTT-ACTCTAAGGAAAA---TGGTAGAGAAAAAACTTTTCT
64 TTTGTCTCATTTAAAGTATAAACT-TTAATTCTAAGGAAAATCGTGGTA-AG-AAAAGCTTTTCT
** * * **
26068 CACGAAATCAAAGCATTAA-TATCGTGCCTCCC
126 TGCAAAACCAAAGCA-TAATTATC-TGTATCCC
* * * * * * *
26100 AA-AAAGGAGAATGTGTTT-TGGTTGCCTAATC-GTGAAAGGTATGAAGATTTTTATAAGAATCC
1 AATGAA-GATAACGTGTTTATGG-TGCCTAATCATTGAAA-GAATGGAGATTTTT-TTAG-ATCC
* * * ** * * *
26162 ATGTTTGTTTCATTTAAAAT-TCGAACTCAAATTATAAGGAAAATTGTGGCAAGAAAAGCTTTTC
61 ATGTTTGTCTCATTTAAAGTAT-AAACTTTAATTCTAAGGAAAATCGTGGTAAGAAAAGCTTTTC
* * **
26226 TTGCATAACCAATGCGCCAA-TAT-TGTGCATCCC
125 TTGCAAAACCAAAGC-ATAATTATCTGT--ATCCC
* * * * * * * *
26259 AATGAAGATAAAGTGTTCATGGGGCCCAATCACTGAAAGAATTGAGAGTTTTTCATAGATCAATG
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGA-TTTTT-TTAGATCCATG
* * *
26324 TTTGTCTCATTTAAAGTTTAAACTTTTAA-TCCAAGGAAAA---TGGTAGAGAAAAAACTTTTC-
64 TTTGTCTCATTTAAAGTATAAAC-TTTAATTCTAAGGAAAATCGTGGTA-AG-AAAAGCTTTTCT
* *
26384 T-CATGAAATCAAAGCATTAA-TAACATGTATCCC
126 TGCA--AAACCAAAGCA-TAATTATC-TGTATCCC
* * * * * * * *
26417 AA-AAAGGAGAATGTGTTT-TGGCTACCTAATC-GTGAAAAAGTATGAAGATTTTTATAAGAATC
1 AATGAA-GATAACGTGTTTATGG-TGCCTAATCATTG--AAAGAATGGAGATTTTT-TTAG-ATC
* * * * * *
26479 CATGTTTGTTTCATTT-AACTCATGAAC-TCAATTTATAAGGAAAATCGTGGCAAGAAAAGCTTT
60 CATGTTTGTCTCATTTAAAGT-ATAAACTTTAA-TTCTAAGGAAAATCGTGGTAAGAAAAGCTTT
* * * *
26542 TCTTGCATAACCAATGCACCAA-TAT-TGTGCCTCCC
123 TCTTGCAAAACCAAAGCA-TAATTATCTGT--ATCCC
* * * * * * *
26577 AATGAAGATAATGTGTTCATGGGGCCCAATCACTGAAAGAATTGAGATTTTATCATAGATCCATG
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTT-T-TTAGATCCATG
* * * * **
26642 TTTGTCTCATTTAAAGTATAAATTTTTATTTTAAGGAAAA---TGGTAGAGAAAAAACTTTTCCC
64 TTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTA-AG-AAAAGCTTTTCTT
* * * *
26704 ACTAAATCAAAGCATTAA-TAACGTGTATCCC
127 GCAAAACCAAAGCA-TAATTATC-TGTATCCC
* * * * * * *
26735 ACA--AAGGAGAATGTGTTT-TGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCC
1 A-ATGAA-GATAACGTGTTTATG-GTGCCTAATCATTGAAAGAATGGAGATT-TTTTTAG-ATCC
* * ** * * * **
26797 ATGTTTGTTTCATCTAACA-TACGAAC-TCAATTTATAAGGAAAATCATGGCGAGAAAAGCTTTT
61 ATGTTTGTCTCATTTAA-AGTATAAACTTTAA-TTCTAAGGAAAATCGTGGTAAGAAAAGCTTTT
* * *
26860 CTTGCAAAACCAATGCACCAA-TAT-TGTGCCTCCC
124 CTTGCAAAACCAAAGCA-TAATTATCTGT--ATCCC
* * * * * *
26894 GATGAAGATAACGTGTTCATGAG-GCCCAATCACTGAAAGAATTGAGATTTTATCGTAGATCCAT
1 AATGAAGATAACGTGTTTATG-GTGCCTAATCATTGAAAGAATGGAGATTTT-T-TTAGATCCAT
* * * *
26958 GTTTGTCTCATTTAAAGTATAAAATTTGATTTTAAGGAAAA---TGGTAGAGAAAAAACTTTTCT
63 GTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTA-AG-AAAAGCTTTTCT
** * *
27020 CACGAAATCAAAGCATTAA-TATCGTGTATCCC
126 TGCAAAACCAAAGCA-TAATTATC-TGTATCCC
* ** * * * * * *
27052 ACA--AAGGAGAATATGTTT-TGTTTGCCTAGTCATGGAAAGAATGAAGATTATTATAAGAATCC
1 A-ATGAA-GATAACGTGTTTATG-GTGCCTAATCATTGAAAGAATGGAGATT-TTTTTAG-ATCC
* * ** ** * * * *
27114 ATGTTTGTTTCATCTAACA-TACGAACTCAAAATATAAGGAAAATTGTGGCAAGAAAAGCTTTTC
61 ATGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTGGTAAGAAAAGCTTTTC
* * * * * *
27178 TTACAAAGCTAATGCGTCAATTTTCTGTATCCC
125 TTGCAAAACCAAAGCAT-AATTATCTGTATCCC
*
27211 AATGAAGATAACGTGTTTATGGTGCCCAATCAATT-AAAGAATGGAGATTTTTTTGTAGATCCAT
1 AATGAAGATAACGTGTTTATGGTGCCTAATC-ATTGAAAGAATGGAGA-TTTTTT-TAGATCCAT
* * *
27275 GTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAA---TGGCAGAGAAAAAACTTTTC-
63 GTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTA-AG-AAAAGCTTTTCT
* * *
27336 -ACATGAAATCAAAGCATTAA-TATCGTGTATCCT
126 TGCA--AAACCAAAGCA-TAATTATC-TGTATCCC
* * * * *** * * *
27369 AA-AAAGGAGAATGTGTTT-TGTTTGCCTAATCCCGGAAAGAATGAAGATTGTTATAAGAATCCA
1 AATGAA-GATAACGTGTTTATG-GTGCCTAATCATTGAAAGAATGGAGATT-TTTTTAG-ATCCA
* * ** * * * * * *
27432 TGTTTGTTTCATCT-AA-TATACGAACTCAAAATATAAGGAAAATCATTGCAAGAAGAGCTTTTC
62 TGTTTGTCTCATTTAAAGTATA--AACTTTAATTCTAAGGAAAATCGTGGTAAGAAAAGCTTTTC
* * * *
27495 TTGCAAAACCAATA-CGTCAATTTTGTGCATCCC
125 TTGCAAAACCAA-AGCAT-AATTATCTGTATCCC
* * * *
27528 AATGAAGATAACGTATTTATGGTGCCCAATCATTGAAAGAATGGTGATTTTTCGTAGATCCATGT
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTTT-TTAGATCCATGT
** * *
27593 TTGTCTCATTTAAAGTATAAACTTT-ATTCTGCGGAAGA-CGATTGAG-AA-AAAAACTTTTCTT
65 TTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCG--TG-GTAAGAAAAGCTTTTCTT
*** ** * *
27654 ATGAAATAAAAGCATTAA-TACTGTGTATCCA
127 GCAAAACCAAAGCA-TAATTA-TCTGTATCCC
* ** * * * *
27685 AAT-AAGGAGAACGCATTT-TGGTTGCCTAATCATGGAAAGAAT-GAGGATTATTATAAGAATCT
1 AATGAA-GATAACGTGTTTATGG-TGCCTAATCATTGAAAGAATGGA-GATT-TTTTTAG-ATCC
* * * ** * * * * * *
27747 AGGCTTGTTTCATTTAACA-TACGAACTTAAAATATGAGGAAAATCGTGGCAAGGAAAGCTTTTC
61 ATGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTGGTAAGAAAAGCTTTTC
** *
27811 TTGCAAAACCAATTCGTGAA-TAT-TGTGCATCCC
125 TTGCAAAACCAAAGCAT-AATTATCTGT--ATCCC
** * * * * * *
27844 AAACAAGATAATGTGTTTATGGGGCCCAATCACTGAAAGAGTGGAGATTTTTTCGTAGATCAATG
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTTTT--TAGATCCATG
* *
27909 TTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAA-CGATTGAG-AA-AAAAACTTTTCT
64 TTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCG--TG-GTAAGAAAAGCTTTTCT
*** * *
27971 TATGAAATCAAAGCATTAA-TATCGTGTATCCA
126 TGCAAAACCAAAGCA-TAATTATC-TGTATCCC
* * * * * ** * *
28003 AAT-AAGGAGAACGCGCTT-TGGCCGCCTAATCATGGAAAGAATAAAGATTATTGTAAGAATCCA
1 AATGAA-GATAACGTGTTTATGG-TGCCTAATCATTGAAAGAATGGAGATT-TTTTTAG-ATCCA
* * * ** ** * * * * * * *
28066 TGCTTGTTTCGTTTAACA-TACGAACTCAAAATATGAGGACAATCATGGAAAGGAAAGCTTTTCT
62 TGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTGGTAAGAAAAGCTTTTCT
* * *
28130 TGCAAAACCAATGCGTCAA-CAT-TGTGCATCCC
126 TGCAAAACCAAAGCAT-AATTATCTGT--ATCCC
* * * * * * *
28162 AATGAAGATAACATGTTTATGGGGCCCACTCACTGAAAGAAAGGAGATTTTTTCGTAGATCCATA
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTTTT--TAGATCCATG
** * *
28227 TTTGTCTCATTTAAAGTATAAACTTTTTTTC-AATGGAAAATGGCATGG-AA-ACAA-CTTTTC-
64 TTTGTCTCATTTAAAGTATAAACTTTAATTCTAA-GGAAAAT--CGTGGTAAGAAAAGCTTTTCT
* * *
28287 T-CATGAAATCAAAGCATTAA-TAACGTCTATCCC
126 TGCA--AAACCAAAGCA-TAATTATC-TGTATCCC
* * * * * * *
28320 AA-AAAGGAGAATGTGTTT-TGGTTGCCTAGTCA-TGAAAAGTATGAAGATTTTTATAAGAATCC
1 AATGAA-GATAACGTGTTTATGG-TGCCTAATCATTG-AAAGAATGGAGATTTTT-TTAG-ATCC
** ** ** * *
28382 ATGTTTG-CTTCATTTAAAACACGAAC-ACAATTTATAAGGAAAATCGTGGCAAGAAAAGCTTTT
61 ATGTTTGTC-TCATTTAAAGTATAAACTTTAA-TTCTAAGGAAAATCGTGGTAAGAAAAGCTTTT
* *
28445 CTTGCATAACCGATACGC-TAA-TAT-TGTGCATCCC
124 CTTGCAAAACC-A-AAGCATAATTATCTGT--ATCCC
* * * * * ** *
28479 AATGAAGATAATGTGTTCATGGGGCCCAATCACTGAAAGAATTAAGATTTTTTCATAGATCCAAG
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTTTT--TAGATCCATG
* * *
28544 TTTGTCTCATTTAAAGTATAAACTTTTATTTTAAGG-AAA--GTGGTAGAGAAAACACTTTTCTT
64 TTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTA-AGAAAA-GCTTTTCTT
*** * * *
28606 ATGAAATCAAAGCATTAA-TACCGTGTATCCA
127 GCAAAACCAAAGCA-TAATTATC-TGTATCCC
* * * * * * *
28637 AAT-AAGGAGAGCGCGCTT-TGGTTGCCTAATCA-TGAAAAGTATGAAGATTTTTATAAGAATCC
1 AATGAA-GATAACGTGTTTATGG-TGCCTAATCATTG-AAAGAATGGAGATTTTT-TTAG-ATCC
* * * * **
28699 ATGTTTGTTTCATTTAACA-CATGAAC-TCAATT-TATAGGGAAAATCGTGGCGAGAAAAGCTTT
61 ATGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTA-A-GGAAAATCGTGGTAAGAAAAGCTTT
* * **
28761 TCTTGCATAACCAATGCGCCAA-TAT-TGTGCATCCC
123 TCTTGCAAAACCAAAGC-ATAATTATCTGT--ATCCC
* * * * * * *
28796 AATGAAGATAAAGTGTTCATGGGGCCCAATCACTGAAAGAATTGAGATTTTTTCATAGATCAATG
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTTTT--TAGATCCATG
* *
28861 TTTGTCTCATTTAAAGTATAAACTTTTAA-TCTAAGGAAAA---TGGTAGAGAAAAAACTTGTC-
64 TTTGTCTCATTTAAAGTATAAAC-TTTAATTCTAAGGAAAATCGTGGTA-AG-AAAAGCTTTTCT
* *
28921 T-CATGAAATCAAAGCATTAA-TAACATGTATCCC
126 TGCA--AAACCAAAGCA-TAATTATC-TGTATCCC
* * * * * * * *
28954 AA-AAAGGAGAATGTGTTT-TGGCTGCCTAATC-GTGAAAAGTACGAAGATTTTTATAAGAATCC
1 AATGAA-GATAACGTGTTTATGG-TGCCTAATCATTG-AAAGAATGGAGATTTTT-TTAG-ATCC
* * ** * * *
29016 ATGTTTGTTTCATTT-AACTCACGAAC-TCAATTTATAAGGAAAATCGTGGCAAGAAAAGCTTTT
61 ATGTTTGTCTCATTTAAAGT-ATAAACTTTAA-TTCTAAGGAAAATCGTGGTAAGAAAAGCTTTT
** * * *
29079 CTTGCGTAACCAATGCACCAA-TAT-TGTGCCTCCC
124 CTTGCAAAACCAAAGCA-TAATTATCTGT--ATCCC
* * * * *
29113 AATGAAGATAACGTGTTCATGGGGCCCAATCACTGAAAGAATTGAGATTTTTTTGTAGATCCATG
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGA-TTTTTT-TAGATCCATG
* * * * * ** **
29178 TTTGTCTCATTTAAAGTATAAAATTTTATTTTAAGGAAAATGGTAG-ACA-AAAAATTTTTCTCA
64 TTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTA-AGAAAAGCTTTTCTTG
* **
29241 CAAAATCAGGGCATTAA-TATCGTGTATCCC
128 CAAAACCAAAGCA-TAATTATC-TGTATCCC
* * * * * * * * *
29271 AA-AAAGGAGAAGGTGTTT-TGTTTGCCTAATCGTGGAAAGAATGAAGATTATTATAAGCATCCA
1 AATGAA-GATAACGTGTTTATG-GTGCCTAATCATTGAAAGAATGGAGATT-TTTTTAG-ATCCA
* * ** ** * * *
29334 TGTTTGTTTCATCTAACA-TACGAACTCAAAATATAAGGAAAATCGTGGCAAGAAAAGCTTTTCT
62 TGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTGGTAAGAAAAGCTTTTCT
* * * *
29398 TACAAAACCAATGCGTCAATTTTCTGTATCCC
126 TGCAAAACCAAAGCAT-AATTATCTGTATCCC
* * * *
29430 AATGAAGATAACATGTTTATTGTGCCCAATCATTGAAAGAATGGAGATTTTTTCATGATCCATGT
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTTTTTA-GATCCATGT
* * *
29495 TTGTCTCATTTACAGTATAAACTTTTATTCTAAGG-AAA--GTGGTACAGAAAAAACTTTTC-T-
65 TTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTA-AG-AAAAGCTTTTCTTG
* *
29555 CATGAAATCAAAGCATTAA-TATTGTGTATCCC
128 CA--AAACCAAAGCA-TAATTA-TCTGTATCCC
* * * * * * *
29587 AA-AAAGGAGAATGTGTTT-TGTTTGCCTAATCA-TGAAAAGAATGAAGATTATTATAAGAATCC
1 AATGAA-GATAACGTGTTTATG-GTGCCTAATCATTG-AAAGAATGGAGATT-TTTTTAG-ATCC
* * * * ** *
29649 ATGTTTGTTTCATCTAACA-TACAAAC-TCAAAACATAAGGAAAATCGTGGCAAGAAAAGCTTTT
61 ATGTTTGTCTCATTTAA-AGTATAAACTTTAATTC-TAAGGAAAATCGTGGTAAGAAAAGCTTTT
* * * *
29712 CTTACAAAACCAATGCGTCAATTCTCTGTATCCC
124 CTTGCAAAACCAAAGCAT-AATTATCTGTATCCC
* *
29746 AATGAAGATAACGTGTTTATCGTGCCCAATCATTGAAAGAATGGAGATTTTTTCGT-GATCCATG
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTTTT--TAGATCCATG
* * * *
29810 TTTGTCTCATTTACAGTATAAAGTTTTATTCTAAGGAAAA---TGGTAGAGAAAAAACTTTTC--
64 TTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTA-AG-AAAAGCTTTTCTT
* *
29870 ACATGAAATCAAAGCATTAA-TATCGTGTATCCC
127 GCA--AAACCAAAGCA-TAATTATC-TGTATCCC
* * * * * * * * *
29903 AA-AAAGGAGAATGTGTTT-TGTTTGCCTAATCATGGAAAGAAAGAAGATTATTATAAGAATCCA
1 AATGAA-GATAACGTGTTTATG-GTGCCTAATCATTGAAAGAATGGAGATT-TTTTTAG-ATCCA
* * * ** * * * *
29966 TGTTTGTTTCATCTAACA-TATGAACTCAAAATATAAGGAAAATCATGGCT-AGAAGAGCTTTTC
62 TGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTGG-TAAGAAAAGCTTTTC
* * * * *
30029 TTGCAAAACTAATGCTTCAATTTTGTGTATCCC
125 TTGCAAAACCAAAGCAT-AATTATCTGTATCCC
* * * * *
30062 AATGAGGATAACGAGTTTATGGTGCCCAATCATTGAAAGAATGGTGATTTTTTCGTAGATCCATT
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTTTT--TAGATCCATG
* * * * *
30127 TTTGTCTCATTTAAAGTATAAAATTTTATTTTACGGAAAA---TGGTAGAGAAAAAACTTTT-TT
64 TTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTA-AG-AAAAGCTTTTCTT
*
30188 -CACGAAATCAAAGCATTAA-TATCGTGTATCCC
127 GCA--AAACCAAAGCA-TAATTATC-TGTATCCC
* * * * * * * *
30220 AA-AAAGGAGAATGTGTTT-TGTTTGCCTAATCATGGAAAGCAA-GAAGATTGTTATAAGAATCC
1 AATGAA-GATAACGTGTTTATG-GTGCCTAATCATTGAAAG-AATGGAGATT-TTTTTAG-ATCC
* * * * ** * * * *
30282 ATGTTTTTTTCATCTAACA-TATGAACTCAAAATATAAGGAAAATCATGGCT-AGAAGAGCTTTT
61 ATGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTGG-TAAGAAAAGCTTTT
* * * * *
30345 CTTGCAAAACTAATGCGTCAATTTTGTGTATCCC
124 CTTGCAAAACCAAAGCAT-AATTATCTGTATCCC
* * * *
30379 AATGAGGATAACGTGTTTATGGTGCCCAATCATAGAAAGAATGGTGATTTTTTCATAGATCCATG
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTTTT--TAGATCCATG
* * *
30444 TTTGTCTCATTTAAAGTATAAACTCTT-ACTCTAAGGAAAA---TGGCAGAGAAAAAACTTTTCT
64 TTTGTCTCATTTAAAGTATAAACT-TTAATTCTAAGGAAAATCGTGGTA-AG-AAAAGCTTTTCT
** * * **
30505 CACGAAATCAAAGCATTAA-TATCGTGCCTCCC
126 TGCAAAACCAAAGCA-TAATTATC-TGTATCCC
* ** * * * * * *
30537 AA-AAAGGGGAATGTGTTT-TAGTTGCCTAATC-GTGAAAAGTATGAAGATTTTTATAAGAATCC
1 AATGAA-GATAACGTGTTTAT-GGTGCCTAATCATTG-AAAGAATGGAGATTTTT-TTAG-ATCC
* * * ** * *
30599 ATGTTTGTTTCATTTAAAAT-TCGAACTCAAATTATAAGGAAAATCGTGGCAAGAAAAGCTTTTC
61 ATGTTTGTCTCATTTAAAGTAT-AAACTTTAATTCTAAGGAAAATCGTGGTAAGAAAAGCTTTTC
* * **
30663 TTGCATAACCAATGCGCCAA-TAT-TGTGCATCCC
125 TTGCAAAACCAAAGC-ATAATTATCTGT--ATCCC
* * * * * * *
30696 AATGAAGATAAAGTGTTCATGGGGCCCAATCACTGAAAGAATTGAGATTTTTTCATAGATCAATG
1 AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTTTT--TAGATCCATG
*
30761 TTTGTCTCATTTAAAGTTTAAACTTT
64 TTTGTCTCATTTAAAGTATAAACTTT
30787 TAATCCGAGG
Statistics
Matches: 5648, Mismatches: 1555, Indels: 1254
0.67 0.18 0.15
Matches are distributed among these distances:
141 9 0.00
142 4 0.00
143 35 0.01
144 134 0.02
145 12 0.00
146 5 0.00
148 3 0.00
149 1 0.00
150 2 0.00
151 6 0.00
152 22 0.00
153 81 0.01
154 13 0.00
155 25 0.00
156 130 0.02
157 578 0.10
158 1930 0.34
159 2071 0.37
160 338 0.06
161 117 0.02
162 9 0.00
163 4 0.00
164 3 0.00
165 3 0.00
167 6 0.00
168 15 0.00
169 87 0.02
170 5 0.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (156 bp):
AATGAAGATAACGTGTTTATGGTGCCTAATCATTGAAAGAATGGAGATTTTTTTAGATCCATGTT
TGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTGGTAAGAAAAGCTTTTCTTGCAA
AACCAAAGCATAATTATCTGTATCCC
Found at i:32015 original size:28 final size:28
Alignment explanation
Indices: 31954--32035 Score: 87
Period size: 28 Copynumber: 2.9 Consensus size: 28
31944 TTTTGGAGAT
* *
31954 AATAACGGCGTTGGAGTGTTCCCTCG--GA
1 AATAACGGGGTTGGAGT-ATCCC-CGATGA
*
31982 AGTAACGGGGTTGGAGTATCCCCGATGA
1 AATAACGGGGTTGGAGTATCCCCGATGA
* *
32010 AATAACGAGGTTGGAGTATCCTCGAT
1 AATAACGGGGTTGGAGTATCCCCGAT
32036 TGTGAAAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.04
27 4 0.09
28 40 0.87
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (28 bp):
AATAACGGGGTTGGAGTATCCCCGATGA
Found at i:32175 original size:51 final size:51
Alignment explanation
Indices: 32018--32187 Score: 205
Period size: 52 Copynumber: 3.3 Consensus size: 51
32008 GAAATAACGA
* *
32018 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGGAAATAAAATCGG
* * * * * *
32070 TGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT-ATGAAAAATTGGTATTTTGGAAATAAAATCGG
*** * *
32122 GGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTGGAAATAAAGTTGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGGAAATAAAATCGG
32173 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
32188 TCGAAAATAA
Statistics
Matches: 98, Mismatches: 19, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
51 37 0.38
52 51 0.52
53 10 0.10
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGGAAATAAAATCGG
Found at i:32233 original size:27 final size:27
Alignment explanation
Indices: 32171--32245 Score: 89
Period size: 27 Copynumber: 2.7 Consensus size: 27
32161 AAATAAAGTT
32171 GGGGTTGGAGTATCCCCTCGA-AAATAAC
1 GGGGTTGGAGTAT-CCC-CGATAAATAAC
* *
32199 GGGGTTGGAGTATCCCCGATGATTAAC
1 GGGGTTGGAGTATCCCCGATAAATAAC
* *
32226 TGGGTTGGAGTGTCCCCGAT
1 GGGGTTGGAGTATCCCCGAT
32246 TGTGAAGAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 3 0.07
27 26 0.62
28 13 0.31
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.25
Consensus pattern (27 bp):
GGGGTTGGAGTATCCCCGATAAATAAC
Found at i:32299 original size:211 final size:210
Alignment explanation
Indices: 31963--32350 Score: 584
Period size: 210 Copynumber: 1.8 Consensus size: 210
31953 TAATAACGGC
* * * *
31963 GTTGGAGTGTTCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTA
1 GTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTA
* *
32028 TCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGTGTTGGAGTATCCCCGATTAAAG
66 TCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAA-
* * **
32093 GAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTATGAAAAATCAATATTT
130 GAAAATTAGTGTTTTGAAAATAAAACCGGAGTTGGAAAATCCCCGATTATGAAAAATCAATATTT
32158 TGGAAATAAAGTTGGG
195 TGGAAATAAAGTTGGG
*
32174 GTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATG-ATTAACTG-GGTTGGAGT
1 GTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATGAAATAAC-GAGGTTGGAGT
* *
32237 GTCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTGGAGTAT-CCCGATTA
65 ATCCCCGATTGTGAA-AAATTGGT-ATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTA
* *
32301 TAGAAAATTAGTGTTTTGAAAATAAAATCGGAGTTGGAAAATCCCCGATT
128 AAGAAAATTAGTGTTTTGAAAATAAAACCGGAGTTGGAAAATCCCCGATT
32351 GTGGAGAATT
Statistics
Matches: 159, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
210 70 0.44
211 60 0.38
212 29 0.18
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.30
Consensus pattern (210 bp):
GTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTA
TCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAG
AAAATTAGTGTTTTGAAAATAAAACCGGAGTTGGAAAATCCCCGATTATGAAAAATCAATATTTT
GGAAATAAAGTTGGG
Found at i:34733 original size:13 final size:13
Alignment explanation
Indices: 34715--34740 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34705 ACAAAGATCC
34715 ATGTATCGATACA
1 ATGTATCGATACA
34728 ATGTATCGATACA
1 ATGTATCGATACA
34741 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:34752 original size:33 final size:33
Alignment explanation
Indices: 34694--34760 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
34684 AAAATTTCCA
***
34694 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
* *
34727 AATGTATCGATACACAGAAAAATGTATTGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
34760 A
1 A
34761 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:34804 original size:19 final size:18
Alignment explanation
Indices: 34780--34847 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
34770 CAATAGCTTA
34780 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
34799 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
34814 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
34831 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
34848 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:34820 original size:13 final size:13
Alignment explanation
Indices: 34802--34826 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34792 ACAATACTTA
34802 TGTATCGATACAT
1 TGTATCGATACAT
34815 TGTATCGATACA
1 TGTATCGATACA
34827 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:34821 original size:32 final size:32
Alignment explanation
Indices: 34783--34845 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
34773 TAGCTTATTA
*
34783 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
34815 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
34846 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:35742 original size:26 final size:26
Alignment explanation
Indices: 35713--35798 Score: 75
Period size: 26 Copynumber: 3.2 Consensus size: 26
35703 GTGTGGGCTT
35713 TGAAAGGTGTCCTGCTCTTTGAGGAC
1 TGAAAGGTGTCCTGCTCTTTGAGGAC
** * * *
35739 TGAAAGGTG-CCACCAACTTGTGTGGGC
1 TGAAAGGTGTCCTGC-TCTT-TGAGGAC
*
35766 TTTAAGAGGTGTCCTGCTCTTTGAGGAC
1 -TGAA-AGGTGTCCTGCTCTTTGAGGAC
35794 TGAAA
1 TGAAA
35799 AATGCCACCA
Statistics
Matches: 43, Mismatches: 12, Indels: 10
0.66 0.18 0.15
Matches are distributed among these distances:
25 3 0.07
26 13 0.30
27 8 0.19
28 8 0.19
29 8 0.19
30 3 0.07
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (26 bp):
TGAAAGGTGTCCTGCTCTTTGAGGAC
Found at i:36025 original size:61 final size:59
Alignment explanation
Indices: 35612--36377 Score: 811
Period size: 55 Copynumber: 13.3 Consensus size: 59
35602 ATAAAGTGTA
** *
35612 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT---G-AAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGGCG
* ** * *
35667 TCCTGTTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT---G-AAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGGCG
*
35722 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAG---AGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGGCG
* * *
35777 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTATGGGCTTTGAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAGAAAAGGCG
* * *
35837 TCCCGCTCTTTGAGGACTGG-AGGTGCCACTAACTTGTGTGGGCTTTAAACG----GG-G
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAA-GAAAAGGCG
* *
35891 TCCTGCTCTTTGGGGAC-GGAAAGGTGCCACCAACTTGTGT-GTCTTTGAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTT-AAAGAAAAGGCG
** * * **
35950 TCCCACTCTATGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGGGAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-AAA-GAAAAGGCG
* * *
36011 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-AAA-GAAAAGGCG
* * * *
36072 TCCTGCTCTTTGAGGACTGGGAAGTGCCAACAATTTGTGTGGGCTTT----AAAAGGGG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGGCG
* *
36127 TCCTGCTCTTTGGGGAC-AGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTT-AAAGAAAAGGCG
* * * * *
36187 TCCCGCTCTTTGAGGACTGGAAAATGCCACAAACTTGTATGGGCTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-AAA-GAAAAGGCG
* *
36248 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT----AAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGGCG
* *
36303 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-AAA-GAAAAGGCG
36363 TCCTGCTCTTTGAGG
1 TCCTGCTCTTTGAGG
36378 GCTAAAAAGT
Statistics
Matches: 610, Mismatches: 66, Indels: 65
0.82 0.09 0.09
Matches are distributed among these distances:
53 2 0.00
54 55 0.09
55 226 0.37
56 3 0.00
57 4 0.01
58 5 0.01
59 53 0.09
60 102 0.17
61 160 0.26
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (59 bp):
TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGGCG
Found at i:36224 original size:176 final size:176
Alignment explanation
Indices: 35612--36377 Score: 880
Period size: 176 Copynumber: 4.4 Consensus size: 176
35602 ATAAAGTGTA
*
35612 TCCTGCTCTTTGAGGACTA-AAAAGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTCCT
1 TCCTGCTCTTTGAGGAC-AGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCT
* * * *
35671 GTTCTTTGAGGACT-AAAAAGTGCCACCAACTCGTGTGGGCTTT----GA-AAGGTGTCCTGCTC
65 GCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAGGAGAAGGCGTCCTGCTC
*
35730 TTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
129 TTTGAGGACTGGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
* * * * *
35777 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTATGGGCTTTGAAAGAAAAGGCGTCCCG
1 TCCTGCTCTTTGAGGACAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTG
** * *
35842 CTCTTTGAGGACTGG-AGGTGCCACTAACTTGTGTGGGCTTTAAA--CG--GG-GTCCTGCTCTT
66 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAGGAGAAGGCGTCCTGCTCTT
* * *
35901 TGGGGAC-GGAAAGGTGCCACCAACTTGTGT-GTCTTTGAAAGAAAAGGCG
131 TGAGGACTGGAAAGGTGCCACCAACTTGTGTGGGCTTT-----AAAAGGTG
** * * **
35950 TCCCACTCTATGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGGGAAGGCGTCC
1 TCCTGCTCTTTGAGGAC-AGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCC
* * *
36014 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCATCCTGCT
64 TGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAAGGAGAAGGCGTCCTGCT
* * * *
36079 CTTTGAGGACTGGGAA-GTGCCAACAATTTGTGTGGGCTTTAAAAGGGG
128 CTTTGAGGACTGGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
* * * *
36127 TCCTGCTCTTTGGGGACAGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCCG
1 TCCTGCTCTTTGAGGACAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTG
* *
36192 CTCTTTGAGGACTGGAAAATGCCACAAACTTGTATGGGCTTTAAAAGGAGAAGGCGTCCTGCTCT
66 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAAGGAGAAGGCGTCCTGCTCT
*
36257 TTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
130 TTGAGGACTGGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
* * *
36303 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCT
1 TCCTGCTCTTTGAGGACAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCT
36367 GCTCTTTGAGG
65 GCTCTTTGAGG
36378 GCTAAAAAGT
Statistics
Matches: 513, Mismatches: 58, Indels: 49
0.83 0.09 0.08
Matches are distributed among these distances:
165 43 0.08
168 5 0.01
169 61 0.12
170 25 0.05
173 45 0.09
174 31 0.06
175 54 0.11
176 160 0.31
177 46 0.09
178 1 0.00
180 2 0.00
181 31 0.06
182 9 0.02
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (176 bp):
TCCTGCTCTTTGAGGACAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTG
CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAGGAGAAGGCGTCCTGCTCTT
TGAGGACTGGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
Found at i:36237 original size:237 final size:234
Alignment explanation
Indices: 35611--36354 Score: 979
Period size: 237 Copynumber: 3.2 Consensus size: 234
35601 AATAAAGTGT
** * * * *
35611 ATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGTTCT
1 ATCCTGCTCTTTGAGGACT-GGAAGTGCCAACAACTTGTGTGGGCTTTAAAAGGGGTCCTGCTCT
* * * * *
35676 TTGAGGACTA-AAAAGTGCCACCAACTCGTGTGGGCTTT----G-AAAGGTGTCCTGCTCTTTGA
65 TTGGGGAC-AGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCCGCTCTTTGA
* *
35735 GGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT--AA--G-AGGTGTCCTGCTCTTTGAGGAC
129 GGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGGAAGGCGTCCTGCTCTTTGAGGAC
** * * * *
35794 TGAAAAATGCCACCAACTTGTATGGGCTTTGAAAGAAAAGGC
193 TGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGC
* * * *
35836 GTCCCGCTCTTTGAGGACTGGAGGTGCC-ACTAACTTGTGTGGGCTTTAAACGGGGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGGAAGTGCCAAC-AACTTGTGTGGGCTTTAAAAGGGGTCCTGCTCT
* * * *
35900 TTGGGGACGGAAAGGTGCCACCAACTTGTGT-GTCTTTGAAAGAAAAGGCGTCCCACTCTATGAG
65 TTGGGGACAGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCCGCTCTTTGAG
35964 GACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGGGAAGGCGTCCTGCTCTTTGAGGACT
130 GACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAA-GGGAAGGCGTCCTGCTCTTTGAGGACT
36029 GGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGC
194 GGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGC
*
36071 ATCCTGCTCTTTGAGGACTGGGAAGTGCCAACAATTTGTGTGGGCTTTAAAAGGGGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACT-GGAAGTGCCAACAACTTGTGTGGGCTTTAAAAGGGGTCCTGCTCT
36136 TTGGGGACAGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCCGCTCTTTGAG
65 TTGGGGACAGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCCGCTCTTTGAG
* *
36201 GACTGGAAAATGCCACAAACTTGTATGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACT
130 GACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGG-GAAGGCGTCCTGCTCTTTGAGGACT
*
36266 GGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAG-G--TG-
194 GGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGC
*
36303 -TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1 ATCCTGCTCTTTGAGGACTGGAA-GTGCCAACAACTTGTGTGGGCTTTAAAAGG
36355 AAAAGGCATC
Statistics
Matches: 458, Mismatches: 41, Indels: 35
0.86 0.08 0.07
Matches are distributed among these distances:
223 6 0.01
224 61 0.13
225 17 0.04
227 1 0.00
228 44 0.10
229 7 0.02
230 30 0.07
231 18 0.04
233 2 0.00
234 50 0.11
235 25 0.05
236 72 0.16
237 125 0.27
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (234 bp):
ATCCTGCTCTTTGAGGACTGGAAGTGCCAACAACTTGTGTGGGCTTTAAAAGGGGTCCTGCTCTT
TGGGGACAGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCCGCTCTTTGAGG
ACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGGAAGGCGTCCTGCTCTTTGAGGACTGG
GAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGC
Found at i:37389 original size:12 final size:11
Alignment explanation
Indices: 37366--37428 Score: 65
Period size: 11 Copynumber: 5.6 Consensus size: 11
37356 CTTTTCTCGC
*
37366 TTTTTCTTTGT
1 TTTTTTTTTGT
37377 TTTGTTTTTTG-
1 TTT-TTTTTTGT
* *
37388 TTTTGTTTAGTT
1 TTTTTTTTTG-T
*
37400 TTTTTTTTTGC
1 TTTTTTTTTGT
37411 TTTTTTTTTGT
1 TTTTTTTTTGT
37422 TTTTTTT
1 TTTTTTT
37429 AAGAGAATGT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
10 5 0.12
11 23 0.55
12 14 0.33
ACGTcount: A:0.02, C:0.03, G:0.11, T:0.84
Consensus pattern (11 bp):
TTTTTTTTTGT
Found at i:37392 original size:17 final size:17
Alignment explanation
Indices: 37372--37428 Score: 73
Period size: 17 Copynumber: 3.5 Consensus size: 17
37362 TCGCTTTTTC
37372 TTTGTTTTGTTTTTTGT
1 TTTGTTTTGTTTTTTGT
* *
37389 TTTGTTTAGTTTTTTTT
1 TTTGTTTTGTTTTTTGT
*
37406 TTTGCTTT-TTTTTTGT
1 TTTGTTTTGTTTTTTGT
37422 TTT-TTTT
1 TTTGTTTT
37429 AAGAGAATGT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
15 3 0.09
16 10 0.29
17 21 0.62
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.84
Consensus pattern (17 bp):
TTTGTTTTGTTTTTTGT
Found at i:40721 original size:154 final size:153
Alignment explanation
Indices: 40231--40723 Score: 374
Period size: 159 Copynumber: 3.1 Consensus size: 153
40221 TTTTTCGTAG
* * * *
40231 ATCCATGTTTGTCTCATTTAAAGCATAAACTTTTATTATGCGGAAAACGATTGAGAAAAAAACTT
1 ATCCATGCTTGTCTCATTTAAAGTACAAACTTTTATTATGAGGAAAAC----GAGAAAAAAA-TT
* * * * * **
40296 TTCTTATGAAATAAAAGCATTAATATCGTGTATCCAAAGAAGGAGGATGCGTTTTGGTTGCCTAA
61 TTCTTATGAAATCAAAGTATTAATATTGTGTATCCAAATAAGGA-GAAGCACTTTGGTTGCCTAA
40361 TCATGGAAAGAATGAAGATTATTATAAGA
125 TCATGGAAAGAATGAAGATTATTATAAGA
* * ** * * **
40390 ATCCATGCTTGTTTCATTTAACA-TACGAACTTAAAATATGAGGAAAATCGTGGCAAGGAAAGCT
1 ATCCATGCTTGTCTCATTTAA-AGTACAAACTTTTATTATGAGGAAAA-CG-AG-AA--AAAAAT
* * * * * * * * *
40454 TTTC-T-TGCAGAACCAAA-TCGTTAATATTGTGCATCCCAATGAA-CATAA-CATGTTTATGTG
60 TTTCTTATG-A-AATCAAAGT-ATTAATATTGTGTATCCAAAT-AAGGAGAAGCA-CTTT-GGTT
* ** * **
40514 GCCCAATCACT-GAAAGTGTGTAGATT-TT-TTCGTA
119 GCCTAATCA-TGGAAAGAATGAAGATTATTATAAG-A
* * * *
40548 GATCAATGTTTGTCTCATTTAAAGTACAAACTTTTATTCTGAGGAAAACGAGAACAAAATTTTCT
1 -ATCCATGCTTGTCTCATTTAAAGTACAAACTTTTATTATGAGGAAAACGAGAAAAAAATTTTCT
40613 TATGAAATCAAAGTATTAATATTGTGTATCCAAATAAGGAGAACGCACTTTGGTTGCCTAATCAT
65 TATGAAATCAAAGTATTAATATTGTGTATCCAAATAAGGAGAA-GCACTTTGGTTGCCTAATCAT
40678 GGAAAGAATGAAGATTATTATAAGA
129 GGAAAGAATGAAGATTATTATAAGA
*
40703 ATCCATGCTTGTTTCATTTAA
1 ATCCATGCTTGTCTCATTTAA
40724 CATACGAACT
Statistics
Matches: 246, Mismatches: 63, Indels: 55
0.68 0.17 0.15
Matches are distributed among these distances:
153 3 0.01
154 74 0.30
155 9 0.04
156 9 0.04
157 7 0.03
158 14 0.06
159 122 0.50
160 8 0.03
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (153 bp):
ATCCATGCTTGTCTCATTTAAAGTACAAACTTTTATTATGAGGAAAACGAGAAAAAAATTTTCTT
ATGAAATCAAAGTATTAATATTGTGTATCCAAATAAGGAGAAGCACTTTGGTTGCCTAATCATGG
AAAGAATGAAGATTATTATAAGA
Found at i:41076 original size:317 final size:316
Alignment explanation
Indices: 40148--46585 Score: 7990
Period size: 317 Copynumber: 20.3 Consensus size: 316
40138 TTACCATGGC
* * * * *
40148 CCAATGCGTCAATTTTGTGTATCCCAATGAAGATAATGTGTTTATGGTGCCCAATCA-TTGAAAG
1 CCAATGCCT-AATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTT-AAAG
* * * **
40212 AATGGTGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGCATAAACTTTTATTATGCGGAAA
64 AATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAA
* * * * *
40277 ACGATTGAGAAAAAAACTTTTCTTATGAAATAAAAGCATTAATATCGTGTAT-CCAAAGAAGGAG
129 ATGGTAGAG-AAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAA-AAGGAG
* * *
40341 GATGCGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGCTTGTTTCA
192 AATGTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCA
* * * * *
40406 TTTAACATACGAACTTAAAATATGAGGAAAATCGTGGCAAGGAAAGCTTTTCTTGCAGAA
257 TTTAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* * * * *
40466 CCAAAT-CGTTAATATTGTGCATCCCAATGAACATAACATGTTTATGTGGCCCAATCACTGAAAG
1 CC-AATGC-CTAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTTAAAG
** * * * *
40530 TGTGTAGATTTTTTCGTAGATCAATGTTTGTCTCATTTAAAGTACAAACTTTTATTCTGAGGAAA
64 AATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAA
* * * * *
40595 A-CG-AGA-ACAAAA-TTTTCTTATGAAATCAAAGTATTAATATTGTGTAT-CCAAATAAGGAGA
129 ATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAA-AAGGAGA
* *** *
40655 ACGCACTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGCTTGTTTCAT
193 ATGTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCAT
* *
40720 TTAACATACGAACTCAAAATATGAGGAAAATCATGGCAAGGAAAGCTTTTCTTGCAAAA
258 TTAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* * * * *
40779 CCAATGCAATAATATTGTGCATCCCAATGAAGATAACGTATTTATGGGGCCGACTTACTTAAAGA
1 CCAATGC-CTAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTTAAAGA
* *
40844 ATGAAGATTTCTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAA
65 ATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAA
* * * *
40909 TGGTGGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAGTAACGTGTATTCCAAAAAGGAGAAT
130 TGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAAT
* * * *
40974 GTGTTTTGGTTGCCTAATCATGAAAAGTATGAAGATTTTTATAAGAATCCATGTTTGTTTCTTTT
195 GTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATTT
*** ** * * *
41039 AACACGTGAACTCAATTTGTAAGGAAAATCGTGGCAAGAAAA-CTTTTCTTGCATAA
260 AACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* * * * * *
41095 CCAATGCACCAATACTGTGCATCCCAATGAAGACAACGTGTTCATGAGGCCCAATCACTGAAAGA
1 CCAATGC-CTAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTTAAAGA
* * * *
41160 ATTGAGATTTTTTCGTAGATCCGTGTTTGTCTCATTTAAAGTATAGACTTTTACTCTAAGGAAAA
65 ATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAA
** * * *
41225 TCATAGAGAAAAAACTTTTCTCAAGAAATCAAATCATTAATAACGTGTATCCCAAAAAGGAGAAT
130 TGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAAT
* * * * * *
41290 GTGTTTTGGTTGCCTAATCATGAAAAGTATAAAGATTTTTGTAAGAATCCAT-TTTCGCTTCATT
195 GTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTT-GTTTCATT
* ** * * *
41354 TAACACACGAACTCAATTTATAGGGAAAATCGTGGCAAGAAAAGCTTTTCTTGCATAA
259 TAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* * * * * *
41412 CCAATGCACCAATATTGTGCATCCCAAAGAAGATAACATGTTCATGGGGCCCAATCCCTGAAAGA
1 CCAATGC-CTAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTTAAAGA
* * * * * *
41477 ATTGAGATTTTTTCGTAGATCCATGTTTGTCTCATTCAAAGTAAAAACTTTTACTCTATGAAAAA
65 ATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAA
* * * *
41542 TCGTAGAGAAAAAACTTTTCTCATGAAATCAAATCATTAATAACATGTATCCCAAAAAGGAGAAT
130 TGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAAT
* * * * * *
41607 GTGTTTTGGTTGCCTAATCAAGAAAAGTATGAAGATTTTTTTAAGAATCCAT-TTTCGCTTCATT
195 GTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTT-GTTTCATT
* ** ** *
41671 TAACACACGAACTCAATTTATAAGGAAAATTGTGGCAAGAAAAGCTTTTCTTGCATAA
259 TAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* *
41729 CCAATCCGCC-AATATTGTGCATCCCAATGAAGATAACGTGTTCATGGGGCCCAATCACTAAAAG
1 CCAAT--GCCTAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTTAAAG
* * *
41793 AATGTAGATTTTTTCGTAGATCCATGTTTGTCTCAATTAAAGTATAAACTTTTATTTTAAGGAAA
64 AATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAA
* * * *
41858 ATGGTGGAGAAAAAACTTTTCTCACGAAATCAAAGCATTTACATCGTGTATCCCAAAAAGGAGAA
129 ATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAA
* * * *
41923 TGTATTTTGTTTGCCTAATCATGGAAAGAATGAAGATTACTATAAGAATCCATGTTTGTTTCATC
194 TGTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATT
*
41988 TAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTTCAAAA
259 TAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* * * * * * *
42046 CCAATGCGTCAATATTGTGCCTCCTAATGAAGATAACATGTTTATGGTGCCCGATCA-TTGGAAG
1 CCAATGCCT-AATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTT-AAAG
* *
42110 AATGGAGGTTTTTTCGTAGATCCATGTTTGTCTCATATAAAGTATAAACTTTTATTCTAAGGAAA
64 AATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAA
* * * * * * * *
42175 CTAGTAGAGAAATAACATTTCCCATGAAATCAAAGCGTTAATATCTTGTATCCCAAAAAGGAAAA
129 ATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAA
* * * * *
42240 CGTGTTTTGGTTACCTAATCTTGGAAAGAATGAAGATTATTATAAGAATCCATGCTTGTTACATT
194 TGTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATT
* * *
42305 TAACATACGAACTCAAAATATGAGGAAAATCAT-GCAAGGAAAGCATTTCTTGCAAAA
259 TAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* * * *
42362 CCAATGCGTCAATATTGTGCTTCCCAATGAAGATAACGTGTTTATGGTGCCCAATCA-TTGAAAA
1 CCAATGCCT-AATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTT-AAAG
* * *
42426 AATGGTGATTTTTTTGTATATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAA
64 AATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAA
* * * * * *
42491 ATGGTAGAGAAATAACATTTCCCATGAAATCAAAGCATTAATATCTTGTATCCCAATAAGGAAAA
129 ATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAA
** * * ** *
42556 TGCATTTTGGTTACCTAATCTTGGAAAGAATGAAGATTATTATAAGAATCCATGCGTGTTTTATT
194 TGTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATT
* * * * *
42621 AAACATACAAACTCAAAATATGAGGAAAATCATGGCAAGGAAAGCATTTCTTGCAAAA
259 TAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
** *
42679 CCAATGTGTCAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGTGCCCAATCA-TTGAAAG
1 CCAATGCCT-AATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTT-AAAG
*
42743 AATGGAGATTTTTTTGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAA
64 AATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAA
* * * *
42808 ATGGTGGAGAAAAAACTTTTCACATGAAATCAAAGCGTTAATATTGTGTATCCCAAAAAGGAGAA
129 ATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAA
** * * * *
42873 TGTGTTTTTTTTGCCTAATCATGGAAAGAAAGAAGATTACTAAAAGAATCCATGTTTGTTTCATC
194 TGTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATT
* * * *
42938 TAACATATGAACTCAAAATATCAGGAAAATCATGGCAATAAGAGCTTTTCTTGCAAAA
259 TAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* * * **
42996 CCAATGCGTCAATTTTGTGCATCCCAATGAGGATAACGTGTTTATGATGCCCAATCA-TTGAAAG
1 CCAATGCCT-AATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTT-AAAG
* * **
43060 AATGGTGATTTTTTCGTAGATTCATG-TTGTCTCATTTAAAGTATAAACTTTTATTCTGCGGAAA
64 AATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAA
* * * * * *
43124 ACGATTGAGAAAAAAACTTTTCTTATGAAATCAAAGCATTAATATTGTGTAT-CCAATTAAGGAG
129 ATGGTAGAG-AAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAA-AAAGGAG
** * * * *
43188 AATGCATTTTGGTTGCCTAATCGTGGAAAGAAAGAAGATTATTAAAAGAATCCATGTCTGTTTCA
192 AATGTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCA
* * * * *
43253 TCTAACATATGAACTCAAAATATCAGGAAAATCATGGCAATAAGAGCTTTTCTTGCAAAA
257 TTTAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* * * **
43313 CCAATGCGTCAATTTTGTGCATCCCAATGAGGATAACGTGTTTATGATGCCCAATCA-TTGAAAG
1 CCAATGCCT-AATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTT-AAAG
* * **
43377 AATGGTGATTTTTTCGTAGATTCATG-TTGTCTCATTTAAAGTATAAACTTTTATTCTGCGGAAA
64 AATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAA
* * * * * *
43441 ACGATTGAGAAAAAAACTTTTCTTATGAAATCAAAGCATTAATATTGTGTAT-CCAATTAAGGAG
129 ATGGTAGAG-AAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAA-AAAGGAG
** * * *
43505 AATGCATTTTGGTTGCCTAATCGTGGAAAGAATGAAGATTTTTGTAAGAATCCATGTTTGTTTCA
192 AATGTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCA
* * * *
43570 TTTAATATACGAACTCAAATTATAAGGAAAATCGTGGCAAGAAAAGCTTTTCTTGCATAA
257 TTTAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* * *
43630 CCAATGCGCCAATATTGTGCATCCCAATGAAGATAACATGTTTATGGGGCCCAATCACTGAAAGA
1 CCAATGC-CTAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTTAAAGA
** * *
43695 ATCTAGATTTTTTCGTAGATCCATGTTTGTCTCATTGAAAGTATAAACTTTTATTTTAAGGAAAA
65 ATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAA
* * * ** *
43760 TGATAGAGAAAAAACTTTTCTCACGAAATCAAAGCATTTACGTCGTGTATCCTAAAAAGGAGAAT
130 TGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAAT
* * * *
43825 ATGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCTATGTTTGTTTCATCT
195 GTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATTT
* *
43890 AACATACGAACTCAGAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTTCAAAA
260 AACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* * * * * * * *
43947 CTAATGCGCCAAGATTGTGCATCCCAACGAAGATAACTTGTCTATGGTGCCCAATCATTTAAAGA
1 CCAATGC-CTAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTTAAAGA
* * *
44012 ATGGAGATTTTTTCGTAGATCTATGTTTGTCTCATTTAAAGTATAAACTTTTACTCTAAAGAAAA
65 ATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAA
* * * * *
44077 TGGTAGAGAAAAAACTTTTC-CAATGAAATGAAGGCGTTAATATCGTGTATCCCAAAAAGAAAAA
130 TGGTAGAGAAAAAACTTTTCTC-ATGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAA
* * * *
44141 TGTGTTTTGGTTGCCGAATCGTGAAAAGCATGAAGA-TATTTATAAGAATCCATGTTTGTTTCAT
194 TGTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTA-TTATAAGAATCCATGTTTGTTTCAT
* ** *
44205 TTAACATACGAACTCAAATTATAAGGAAAATTGTGGCAAGAAAAGCTTTTCTTGCATAA
258 TTAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* * * * *
44264 CCAATGCGCCAATATTGTTCATCCCAACGAAGATAACGTGTTTATGGGGCCCAATTACTGAAAGA
1 CCAATGC-CTAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTTAAAGA
* *
44329 ATTGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTACTCTAAGGAAAA
65 ATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAA
** * * *
44394 TCATAGAGAAAAAACTTTTCTCATGCAATTCAAAGCATTAAAAACGTGTATCCCAAAAAGGAGAA
130 TGGTAGAGAAAAAACTTTTCTCATG-AAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAA
* * * * * * * *
44459 TGTGTTTTGGTTACCTAATCATGAAAAGTATGATGCTTTTTATAAGAATCCATGTTCGCTTCATT
194 TGTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATT
* * ** *
44524 TAACACATGAACTCAATTTATAAGGAAAATCATAGCAAGAAAAGCTTTTCTTGCAAAA
259 TAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* * * * * * * *
44582 CCAATGCGTCAATTTTCTGTATCCCAATGAAGATAACTTGTTTATGGTGCCGAATCA-TTGAGAG
1 CCAATGCCT-AATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTT-AAAG
44646 AATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAA
64 AATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAA
**
44711 ATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGTGTTAATATCGTGTATCCCAAAAAGGAGAA
129 ATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAA
* * * * *
44776 TGTGTTTTGCTTGCCTAGTCATGGAAAGAATGAAGATTACTATGAGAATCCATGTTTGTTTCATC
194 TGTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATT
* * * *
44841 TAATATACGAACTCAAATTATAAGGAAAATCATGGCAGGAAATGCTTTTCTTGCAAAA
259 TAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* * * **
44899 CCAAAGCATCAATATTGTGCATCCCAATGAACATAACGTGTTTATGGGGCCCAATCACAGAAAGA
1 CCAATGCCT-AATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTTAAAGA
* * * * * * * *
44964 GTGGAGATTTTTTCGTAGATCAATGGTTGTCTCATTTAAAGTAAAAAGTTTTATTCTGAGGGAAG
65 ATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAA
* * * *
45029 CGTTTGAGAAAAAAACTTTTCTTATGAAATCAAAGCATTAATATCGTGTAT-CCAAATAAGGAGA
130 TGGTAGAG-AAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAA-AAGGAGA
* ** * * *
45093 ATGCGCCTTGGTTGCCTAATCATGGAAAAAATGAAGATTATTATAAGAATCCATGCTTGTTTTAT
193 ATGTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCAT
* * * *
45158 TTAACATACGAACTCAAAATATGAGGAAAATCATAGCAAGGAAAGCTTTTCTTTCAAAA
258 TTAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* * * * *
45217 CCAATGCATCAATATTGTGCATCCCAATGAAGATAACGTATTTATAGGGCCCACTCACTAAAAGA
1 CCAATGCCT-AATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTTAAAGA
* *
45282 ATGGTGATTTTTTCATAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAA
65 ATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAA
* * *
45347 TCGTATAGAAAAAACTTTGCTCATGAAATCAAAGCATTAATAAT-GTGTATCCCAAAAAGGAGAA
130 TGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAAT-ATCGTGTATCCCAAAAAGGAGAA
* * *
45411 TGTGTTTTGGTTGCC-AATCATGAAAAGTATGAAGATTTTTATAAGAATCCATGTTTGTTTCATT
194 TGTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATT
* ** * ** * *
45475 TAACACACGAACTCAATTTATATGGAAAATTGTGGCAAGGAAAGCTTTTCTTGCATAA
259 TAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* * * * *
45533 CCAATGCACCAATATTGTGCATCGCAATGAAGATAACGTGTTCATGGGGGCACAATCACTAAAAG
1 CCAATGC-CTAATATTGTGCATCCCAATGAAGATAACGTGTTTAT-GGGGCCCAATCACTTAAAG
* * * *
45598 AATTGAGATTTTTTTGTAGTTCCATGTTTGTCTCATTTAAAGTATAAACTTTTACTCTAAGGAAA
64 AATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAA
* * * * * * *
45663 ATCGTAGAGAAAAAACTTTTCTCATTAATTCAAAACATTAACAACGTGTATCCCAAACAGGAGAA
129 ATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAA
* * * * * * * * *
45728 TGTGTTTTGGTTACCAAAT-AGTGAAAAGTATGAAGATTTTTATAAGAATCCATGGTCGCTTCCT
194 TGTGTTTTGGTTGCCTAATCA-TGGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCAT
* ** **
45792 TTAACACACGAACTCAATTTATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCGTAA
258 TTAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* * * * * *
45851 CCAATGCGCCACCAATATTGTGCATCCCAATGAAGATAAAGTGTTCATAGGGCCCAATCCCTGAA
1 CCAAT--G-C-CTAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTTAA
* * * * *
45916 AGAATTGAGATTTTTTCATAGATCCATGTTTGTCTCATTGAAAGTATAAAGTTTTACTCTAAGGA
62 AGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGA
* *
45981 AAATCGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAGAGGAG
127 AAATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAG
* * *
46046 AATGTGTTTTGCTTGCCTAATCATGGAAAGAATGAAGAATATTATAAGAATCAATGTTTGTTTCA
192 AATGTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCA
* * * * *
46111 TCTAACATGCGAACTCAAAATATAAGGAAAATCGTAGCAAGAAAATCTTTTCTTGCAAAA
257 TTTAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* * * ** * *
46171 CCAATGCATCAATTTTCTATATCCCAATGAAGATAACGTG-TTATGGCGCCCAATCA-TTGAGAG
1 CCAATGCCT-AATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTT-AAAG
* *
46234 AATGGATATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTGATTCTAAGGAAA
64 AATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAA
** * *
46299 ATGGTAGAGAAAAAACTTTTCTCATGAAATTGAAGCCTTAATAACGTGTATCCCAAAAAGGAGAA
129 ATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAA
* * * *
46364 TGTGTTTTGGTTGCCTAATCATGAAAAGTATGAAGATTTTTATAAGAATCCTTGTTTGTTTCATT
194 TGTGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATT
* *
46429 TAACATACGAACTC-AAATATAAGGAAAATCGTGGCAAGAAAAGCTTTTCTTGCATAA
259 TAACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
* *
46486 CCAATGCGCCAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTAAAAGA
1 CCAATGC-CTAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTTAAAGA
* * * *
46551 ATGTAGATTTTTTCTTAGATTCATGTTTGTTTCAT
65 ATGGAGATTTTTTCGTAGATCCATGTTTGTCTCAT
46586 CTAACATACG
Statistics
Matches: 5397, Mismatches: 673, Indels: 102
0.87 0.11 0.02
Matches are distributed among these distances:
312 3 0.00
313 270 0.05
314 6 0.00
315 81 0.02
316 1008 0.19
317 2938 0.54
318 806 0.15
319 8 0.00
320 239 0.04
321 38 0.01
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (316 bp):
CCAATGCCTAATATTGTGCATCCCAATGAAGATAACGTGTTTATGGGGCCCAATCACTTAAAGAA
TGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAAT
GGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAATATCGTGTATCCCAAAAAGGAGAATG
TGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATCCATGTTTGTTTCATTTA
ACATACGAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTCTTGCAAAA
Found at i:46384 original size:158 final size:158
Alignment explanation
Indices: 40164--49084 Score: 3294
Period size: 158 Copynumber: 56.4 Consensus size: 158
40154 CGTCAATTTT
* * *
40164 GTGTATCCCAATGAA-GATAATGTGTTTATGG-TGCCCAATCATTGAAAGAATGGTGATTTTTTC
1 GTGTATCCCAA-AAAGGATAATGTGTTT-TGGTTGCCTAATCATTGAAAGAATGGAGATTTTTTC
* * * ** *
40227 GTAGATCCATGTTTGTCTCATTTAAAGCATAAACTTTTATTATGCGGAAAA-CGATTGAGAAAAA
64 GTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCG-TAGAG-AAAA
* *
40291 AACTTTTCTTATGAAATAAAAGCATTAATATC
127 AACTTTTCTCATGAAATCAAAGCATTAATATC
** * * * *
40323 GTGTAT-CCAAAGAAGGAGGATGCGTTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTAT-
1 GTGTATCCCAAA-AAGGATAATGTGTTTTGGTTGCCTAATCATTGAAAGAATGGAGATT-TTTTC
* * * ** * * * *
40386 -AAGAATCCATGCTTGTTTCATTTAACA-TACGAACTTAAAATATGAGGAAAATCGT-G-GCAAG
64 GTAG-ATCCATGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTAGAG-AA-
* * * * *
40447 GAAAGCTTTTCT--TGCAGAACCAAATCGTTAATATT
125 -AAAACTTTTCTCATG-A-AATCAAAGCATTAATATC
* * * ** * * * ** *
40482 GTGCATCCCAATGAA-CATAACATGTTTAT-GTGGCCCAATCACTGAAAGTGTGTAGATTTTTTC
1 GTGTATCCCAA-AAAGGATAATGTGTTT-TGGTTGCCTAATCATTGAAAGAATGGAGATTTTTTC
* * * * *
40545 GTAGATCAATGTTTGTCTCATTTAAAGTACAAACTTTTATTCTGAGGAAAA-CG-AGA-ACAAAA
64 GTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAAA
* * *
40607 -TTTTCTTATGAAATCAAAGTATTAATATT
129 CTTTTCTCATGAAATCAAAGCATTAATATC
* * *** * * *
40636 GTGTAT-CCAAATAAGGAGAACGCACTTTGGTTGCCTAATCATGGAAAGAATGAAGATTATTAT-
1 GTGTATCCCAAA-AAGGATAATGTGTTTTGGTTGCCTAATCATTGAAAGAATGGAGATT-TTTTC
* * * ** ** * * * *
40699 -AAGAATCCATGCTTGTTTCATTTAACA-TACGAACTCAAAATATGAGGAAAATCAT-G-GCAAG
64 GTAG-ATCCATGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTAGAG-AA-
* * * * *
40760 GAAAGCTTTTCT--TGCAAAACCAATGCAATAATATT
125 -AAAACTTTTCTCATG--AAATCAAAGCATTAATATC
* * * * * * * * * *
40795 GTGCATCCCAATGAA-GATAACGTATTTATGG-GGCCGACTTACTT-AAAGAATGAAGATTTCTT
1 GTGTATCCCAA-AAAGGATAATGTGTTT-TGGTTGCCTAATCA-TTGAAAGAATGGAGATTTTTT
* * *
40857 CGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTGGAGAAAAA
63 CGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAA
* *
40922 ACTTTTCTCATGAAATCAAAGCATTAGTAAC
128 ACTTTTCTCATGAAATCAAAGCATTAATATC
* * * *
40953 GTGTATTCCAAAAAGGAGAATGTGTTTTGGTTGCCTAATCA-TGAAAAGTATGAAGATTTTTAT-
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTG-AAAGAATGGAGATTTTT-TC
* * * * * *
41016 -AAGAATCCATGTTTGTTTCTTTTAACACG--TGAAC-TCAATTTGTAAGGAAAATCGT-G-GCA
64 GTAG-ATCCATGTTTGTCTCATTTAA-A-GTATAAACTTTAA-TTCTAAGGAAAATCGTAGAG-A
* * **
41075 AGAAAACTTTTCT--TGCATAACCAATGCACCAATA-C
124 A-AAAACTTTTCTCATG-A-AATCAAAGCATTAATATC
* * * * * * * *
41110 TGTGCATCCCAATGAA-GACAACGTGTTCATGAG--GCCCAATCACTGAAAGAATTGAGATTTTT
1 -GTGTATCCCAA-AAAGGATAATGTGTT-TTG-GTTGCCTAATCATTGAAAGAATGGAGATTTTT
* * * * *
41172 TCGTAGATCCGTGTTTGTCTCATTTAAAGTATAGACTTTTACTCTAAGGAAAATCATAGAGAAAA
62 TCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAA
* * *
41237 AACTTTTCTCAAGAAATCAAATCATTAATAAC
127 AACTTTTCTCATGAAATCAAAGCATTAATATC
* * **
41269 GTGTATCCCAAAAAGGAGAATGTGTTTTGGTTGCCTAATCA-TGAAAAGTATAAAGA-TTTTT-G
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTG-AAAGAATGGAGATTTTTTCG
* ** *
41331 TAAGAATCCAT-TTTCG-CTTCATTTAACA-CACGAAC-TCAATT-TATAGGGAAAATCGT-G-G
65 T-AG-ATCCATGTTT-GTC-TCATTTAA-AGTATAAACTTTAATTCTA-A-GGAAAATCGTAGAG
* * ** *
41389 CAAGAAAAGCTTTTCT--TGCATAACCAATGCACCAATATT
123 -AA-AAAA-CTTTTCTCATG-A-AATCAAAGCATTAATATC
* ** * * * ** *
41428 GTGCATCCCAAAGAA-GATAACATGTTCATGG-GGCCCAATCCCTGAAAGAATTGAGATTTTTTC
1 GTGTATCCCAAA-AAGGATAATGTGTT-TTGGTTGCCTAATCATTGAAAGAATGGAGATTTTTTC
* * * * * *
41491 GTAGATCCATGTTTGTCTCATTCAAAGTAAAAACTTTTACTCTATGAAAAATCGTAGAGAAAAAA
64 GTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAAA
* *
41556 CTTTTCTCATGAAATCAAATCATTAATAAC
129 CTTTTCTCATGAAATCAAAGCATTAATATC
* * * * *
41586 ATGTATCCCAAAAAGGAGAATGTGTTTTGGTTGCCTAATCA-AGAAAAGTATGAAGATTTTTT--
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTG-AAAGAATGGAGATTTTTTCG
* ** * * *
41648 TAAGAATCCAT-TTTCG-CTTCATTTAACA-CACGAAC-TCAATTTATAAGGAAAATTGT-G-GC
65 T-AG-ATCCATGTTT-GTC-TCATTTAA-AGTATAAACTTTAA-TTCTAAGGAAAATCGTAGAG-
* ** *** *
41707 AAGAAAAGCTTTTCT--TGCATAACCAATCCGCCAATATT
123 AA-AAAA-CTTTTCTCATG-A-AATCAAAGCATTAATATC
* * * * * * * * *
41745 GTGCATCCCAATGAA-GATAACGTGTTCATGG-GGCCCAATCACTAAAAGAATGTAGATTTTTTC
1 GTGTATCCCAA-AAAGGATAATGTGTT-TTGGTTGCCTAATCATTGAAAGAATGGAGATTTTTTC
* * * * *
41808 GTAGATCCATGTTTGTCTCAATTAAAGTATAAACTTTTATTTTAAGGAAAATGGTGGAGAAAAAA
64 GTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAAA
* * *
41873 CTTTTCTCACGAAATCAAAGCATTTACATC
129 CTTTTCTCATGAAATCAAAGCATTAATATC
* * * * * * *
41903 GTGTATCCCAAAAAGGAGAATGTATTTTGTTTGCCTAATCATGGAAAGAATGAAGATTACTAT--
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTGAAAGAATGGAGATT-TTTTCG
* * * ** ** * * *
41966 AAGAATCCATGTTTGTTTCATCTAACA-TACGAACTCAAAATATAAGGAAAATCAT-G-GCAAGA
65 TAG-ATCCATGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTAGAG-AA-A
* * * * *
42028 AAAGCTTTTCTTTCA--AAACCAATGCGTCAATATT
126 AAA-CTTTTC--TCATGAAATCAAAGCATTAATATC
** * * ** ** * *
42062 GTGCCTCCTAATGAA-GATAACATGTTTATGG-TGCCCGATCATTGGAAGAATGGAGGTTTTTTC
1 GTGTATCCCAA-AAAGGATAATGTGTTT-TGGTTGCCTAATCATTGAAAGAATGGAGATTTTTTC
* * * * *
42125 GTAGATCCATGTTTGTCTCATATAAAGTATAAACTTTTATTCTAAGGAAACTAGTAGAGAAATAA
64 GTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAAA
* * *
42190 CATTTCCCATGAAATCAAAGCGTTAATATC
129 CTTTTCTCATGAAATCAAAGCATTAATATC
* * * * * *
42220 TTGTATCCCAAAAAGGAAAACGTGTTTTGGTTACCTAATC-TTGGAAAGAATGAAGATTATTAT-
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATT-GAAAGAATGGAGATT-TTTTC
* * ** ** * * * *
42283 -AAGAATCCATGCTTGT-TACATTTAACA-TACGAACTCAAAATATGAGGAAAATCAT-GCA-AG
64 GTAG-ATCCATGTTTGTCT-CATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTAG-AGA-
* * * * * * * *
42343 GAAAGCATTTCT--TGCAAAACCAATGCGTCAATATT
124 AAAAACTTTTCTCATG--AAATCAAAGCATTAATATC
* * * * *
42378 GTGCT-TCCCAATGAA-GATAACGTGTTTATGG-TGCCCAATCATTGAAAAAATGGTGATTTTTT
1 GTG-TATCCCAA-AAAGGATAATGTGTTT-TGGTTGCCTAATCATTGAAAGAATGGAGATTTTTT
* * * * *
42440 TGTATATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAATA
63 CGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAA
* *
42505 ACATTTCCCATGAAATCAAAGCATTAATATC
128 ACTTTTCTCATGAAATCAAAGCATTAATATC
* * * ** * * *
42536 TTGTATCCCAATAAGGAAAATGCATTTTGGTTACCTAATC-TTGGAAAGAATGAAGATTATTAT-
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATT-GAAAGAATGGAGATT-TTTTC
* ** * * * * ** * * * *
42599 -AAGAATCCATGCGTGTTTTA-TTAAACATACAAACTCAAAATATGAGGAAAATCAT-G-GCAAG
64 GTAG-ATCCATGTTTGTCTCATTTAAA-GTATAAACTTTAATTCTAAGGAAAATCGTAGAG-AA-
* * * * ** * *
42660 GAAAGCATTTCT--TGCAAAACCAATGTGTCAATATT
125 -AAAACTTTTCTCATG--AAATCAAAGCATTAATATC
* * * * *
42695 GTGCATCCCAATGAA-GATAACGTGTTTATGG-TGCCCAATCATTGAAAGAATGGAGATTTTTTT
1 GTGTATCCCAA-AAAGGATAATGTGTTT-TGGTTGCCTAATCATTGAAAGAATGGAGATTTTTTC
* * *
42758 GTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTGGAGAAAAAA
64 GTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAAA
* * *
42823 CTTTTCACATGAAATCAAAGCGTTAATATT
129 CTTTTCTCATGAAATCAAAGCATTAATATC
* ** * * * ** ***
42853 GTGTATCCCAAAAAGGAGAATGTGTTTTTTTTGCCTAATCATGGAAAGAAAGAAGA-TTACTAAA
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTGAAAGAATGGAGATTTTTTCGT
* * * ** * * * *
42917 AGAATCCATGTTTGTTTCATCTAACA-TATGAACTCAAAATATCAGGAAAATCAT-G-GCAATAA
66 AG-ATCCATGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTAGAG-AA-AA
* * * * * * *
42979 GAGCTTTTCT--TGCAAAACCAATGCGTCAATTTT
127 -AACTTTTCTCATG--AAATCAAAGCATTAATATC
* ** * * * *
43012 GTGCATCCCAATGAGGATAACGTGTTTAT-GATGCCCAATCATTGAAAGAATGGTGATTTTTTCG
1 GTGTATCCCAAAAAGGATAATGTGTTT-TGGTTGCCTAATCATTGAAAGAATGGAGATTTTTTCG
* * ** *
43076 TAGATTCATG-TTGTCTCATTTAAAGTATAAACTTTTATTCTGCGGAAAA-CGATTGAGAAAAAA
65 TAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCG-TAGAG-AAAAA
* *
43139 ACTTTTCTTATGAAATCAAAGCATTAATATT
128 ACTTTTCTCATGAAATCAAAGCATTAATATC
* * ** * * * * * **
43170 GTGTAT-CCAATTAAGGAGAATGCATTTTGGTTGCCTAATCGTGGAAAGAAAGAAGA-TTATTAA
1 GTGTATCCCAA-AAAGGATAATGTGTTTTGGTTGCCTAATCATTGAAAGAATGGAGATTTTTTCG
* * * * * ** * * * *
43233 AAGAATCCATGTCTGTTTCATCTAACA-TATGAACTCAAAATATCAGGAAAATCAT-G-GCAATA
65 TAG-ATCCATGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTAGAG-AA-A
* * * * * * *
43295 AGAGCTTTTCT--TGCAAAACCAATGCGTCAATTTT
126 A-AACTTTTCTCATG--AAATCAAAGCATTAATATC
* ** * * * *
43329 GTGCATCCCAATGAGGATAACGTGTTTAT-GATGCCCAATCATTGAAAGAATGGTGATTTTTTCG
1 GTGTATCCCAAAAAGGATAATGTGTTT-TGGTTGCCTAATCATTGAAAGAATGGAGATTTTTTCG
* * ** *
43393 TAGATTCATG-TTGTCTCATTTAAAGTATAAACTTTTATTCTGCGGAAAA-CGATTGAGAAAAAA
65 TAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCG-TAGAG-AAAAA
* *
43456 ACTTTTCTTATGAAATCAAAGCATTAATATT
128 ACTTTTCTCATGAAATCAAAGCATTAATATC
* * ** * * *
43487 GTGTAT-CCAATTAAGGAGAATGCATTTTGGTTGCCTAATCGTGGAAAGAATGAAGA-TTTTT-G
1 GTGTATCCCAA-AAAGGATAATGTGTTTTGGTTGCCTAATCATTGAAAGAATGGAGATTTTTTCG
* ** *
43549 TAAGAATCCATGTTTGTTTCATTT-AA-TATACGAACTCAAATTATAAGGAAAATCGT-G-GCAA
65 T-AG-ATCCATGTTTGTCTCATTTAAAGTATA--AACTTTAATTCTAAGGAAAATCGTAGAG-AA
* * *** *
43610 GAAAAGCTTTTCT--TGCATAACCAATGCGCCAATATT
125 -AAAA-CTTTTCTCATG-A-AATCAAAGCATTAATATC
* * ** * * * **
43646 GTGCATCCCAATGAA-GATAACATGTTTATGG-GGCCCAATCACTGAAAGAATCTAGATTTTTTC
1 GTGTATCCCAA-AAAGGATAATGTGTTT-TGGTTGCCTAATCATTGAAAGAATGGAGATTTTTTC
* * *
43709 GTAGATCCATGTTTGTCTCATTGAAAGTATAAACTTTTATTTTAAGGAAAAT-GATAGAGAAAAA
64 GTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCG-TAGAGAAAAA
* * **
43773 ACTTTTCTCACGAAATCAAAGCATTTACGTC
128 ACTTTTCTCATGAAATCAAAGCATTAATATC
* * * * * * *
43804 GTGTATCCTAAAAAGGAGAATATGTTTTGTTTGCCTAATCATGGAAAGAATGAAGATTATTAT--
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTGAAAGAATGGAGATT-TTTTCG
* * * * ** * * * *
43867 AAGAATCTATGTTTGTTTCATCTAACA-TACGAAC-TCAGAATATAAGGAAAATCAT-G-GCAAG
65 TAG-ATCCATGTTTGTCTCATTTAA-AGTATAAACTTTA-ATTCTAAGGAAAATCGTAGAG-AA-
* * * * *** * *
43928 AAAAGCTTTTCT-TTCAAAACTAATGCGCCAAGATT
125 AAAA-CTTTTCTCATGAAATC-AAAGCATTAATATC
* * * * *
43963 GTGCATCCCAACGAA-GATAACT-TGTCTATGG-TGCCCAATCATTTAAAGAATGGAGATTTTTT
1 GTGTATCCCAA-AAAGGATAA-TGTGT-TTTGGTTGCCTAATCATTGAAAGAATGGAGATTTTTT
* * * * *
44025 CGTAGATCTATGTTTGTCTCATTTAAAGTATAAACTTTTACTCTAAAGAAAATGGTAGAGAAAAA
63 CGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAA
* * *
44090 ACTTTTC-CAATGAAATGAAGGCGTTAATATC
128 ACTTTTCTC-ATGAAATCAAAGCATTAATATC
* * * * * * *
44121 GTGTATCCCAAAAAGAAAAATGTGTTTTGGTTGCCGAATC-GTGAAAAGCATGAAGATATTTAT-
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTG-AAAGAATGGAGAT-TTTTTC
* * ** ** * *
44184 -AAGAATCCATGTTTGTTTCATTTAACA-TACGAACTCAAATTATAAGGAAAATTGT-G-GCAAG
64 GTAG-ATCCATGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTAGAG-AA-
* * *** *
44245 AAAAGCTTTTCT--TGCATAACCAATGCGCCAATATT
125 AAAA-CTTTTCTCATG-A-AATCAAAGCATTAATATC
* * * * * * *
44280 GT-TCATCCCAACGAA-GATAACGTGTTTATGG-GGCCCAATTACTGAAAGAATTGAGATTTTTT
1 GTGT-ATCCCAA-AAAGGATAATGTGTTT-TGGTTGCCTAATCATTGAAAGAATGGAGATTTTTT
* * *
44342 CGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTACTCTAAGGAAAATCATAGAGAAAAA
63 CGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAA
* * *
44407 ACTTTTCTCATGCAATTCAAAGCATTAAAAAC
128 ACTTTTCTCATG-AAATCAAAGCATTAATATC
* * * *
44439 GTGTATCCCAAAAAGGAGAATGTGTTTTGGTTACCTAATCA-TGAAAAGTAT-GATGCTTTTTAT
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTG-AAAGAATGGA-GATTTTT-T
* * * * * * *
44502 --AAGAATCCATGTTCG-CTTCATTTAACA-CATGAAC-TCAATTTATAAGGAAAATCATAGCA-
63 CGTAG-ATCCATGTTTGTC-TCATTTAA-AGTATAAACTTTAA-TTCTAAGGAAAATCGTAG-AG
* * * * * *
44561 AGAAAAGCTTTTCT--TGCAAAACCAATGCGTCAATTTTC
123 A-AAAAACTTTTCTCATG--AAATCAAAGCATTAA-TATC
* * *
44599 -TGTATCCCAATGAA-GATAACT-TGTTTATGG-TGCCGAATCATTGAGAGAATGGAGATTTTTT
1 GTGTATCCCAA-AAAGGATAA-TGTGTTT-TGGTTGCCTAATCATTGAAAGAATGGAGATTTTTT
* *
44660 CGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAA
63 CGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAA
**
44725 ACTTTTCTCATGAAATCAAAGTGTTAATATC
128 ACTTTTCTCATGAAATCAAAGCATTAATATC
* * * * * * *
44756 GTGTATCCCAAAAAGGAGAATGTGTTTTGCTTGCCTAGTCATGGAAAGAATGAAGATTACTAT-G
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTGAAAGAATGGAGATT-TTTTCG
* * ** * * * *
44820 -AGAATCCATGTTTGTTTCATCT-AA-TATACGAACTCAAATTATAAGGAAAATCATGGCAGGAA
65 TAG-ATCCATGTTTGTCTCATTTAAAGTATA--AACTTTAATTCTAAGGAAAATCGTAG-AGAAA
** * * *
44882 ATGCTTTTCT--TGCAAAACCAAAGCATCAATATT
126 AAACTTTTCTCATG--AAATCAAAGCATTAATATC
* * * * * * ** *
44915 GTGCATCCCAATGAA-CATAACGTGTTTATGG-GGCCCAATCACAGAAAGAGTGGAGATTTTTTC
1 GTGTATCCCAA-AAAGGATAATGTGTTT-TGGTTGCCTAATCATTGAAAGAATGGAGATTTTTTC
* * * * * * * * *
44978 GTAGATCAATGGTTGTCTCATTTAAAGTAAAAAGTTTTATTCTGAGG-GAAGCGTTTGAGAAAAA
64 GTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCG-TAGAG-AAAA
*
45042 AACTTTTCTTATGAAATCAAAGCATTAATATC
127 AACTTTTCTCATGAAATCAAAGCATTAATATC
* * ** * * * *
45074 GTGTAT-CCAAATAAGGAGAATGCGCCTTGGTTGCCTAATCATGGAAAAAATGAAGATTATTAT-
1 GTGTATCCCAAA-AAGGATAATGTGTTTTGGTTGCCTAATCATTGAAAGAATGGAGATT-TTTTC
* * * * ** ** * * * * *
45137 -AAGAATCCATGCTTGTTTTATTTAACA-TACGAACTCAAAATATGAGGAAAATCATAGCA-AGG
64 GTAG-ATCCATGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTAG-AGA-A
* * * * *
45199 AAAGCTTTTCTTTCA--AAACCAATGCATCAATATT
125 AAAACTTTTC--TCATGAAATCAAAGCATTAATATC
* * * * * * * * *
45233 GTGCATCCCAATGAA-GATAACGTATTTATAGG--GCCCACTCACTAAAAGAATGGTGATTTTTT
1 GTGTATCCCAA-AAAGGATAATGTGTTT-T-GGTTGCCTAATCATTGAAAGAATGGAGATTTTTT
* * *
45295 CATAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATCGTATAGAAAAA
63 CGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAA
*
45360 ACTTTGCTCATGAAATCAAAGCATTAATAAT-
128 ACTTTTCTCATGAAATCAAAGCATTAAT-ATC
* * *
45391 GTGTATCCCAAAAAGGAGAATGTGTTTTGGTTGCC-AATCA-TGAAAAGTATGAAGATTTTTAT-
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTG-AAAGAATGGAGATTTTT-TC
* * * ** * *
45453 -AAGAATCCATGTTTGTTTCATTTAACA-CACGAAC-TCAATT-TATATGGAAAATTGT-G-GCA
64 GTAG-ATCCATGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTA-A-GGAAAATCGTAGAG-A
* * * ** *
45512 AGGAAAGCTTTTCT--TGCATAACCAATGCACCAATATT
124 A--AAAACTTTTCTCATG-A-AATCAAAGCATTAATATC
* * * * * ** * * *
45549 GTGCATCGCAATGAA-GATAACGTGTTCATGGGGGCAC-AATCACTAAAAGAATTGAGATTTTTT
1 GTGTATCCCAA-AAAGGATAATGTGTT-TTGGTTGC-CTAATCATTGAAAGAATGGAGATTTTTT
* * * *
45612 TGTAGTTCCATGTTTGTCTCATTTAAAGTATAAACTTTTACTCTAAGGAAAATCGTAGAGAAAAA
63 CGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAA
* * * * *
45677 ACTTTTCTCATTAATTCAAAACATTAACAAC
128 ACTTTTCTCATGAAATCAAAGCATTAATATC
* * * * * * *
45708 GTGTATCCCAAACAGGAGAATGTGTTTTGGTTACCAAAT-AGTGAAAAGTATGAAGATTTTTAT-
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTG-AAAGAATGGAGATTTTT-TC
* * * * * ** * * *
45771 -AAGAATCCATGGTCG-CTTCCTTTAACA-CACGAAC-TCAATTTATAAGGAAAATCAT-G-GCA
64 GTAG-ATCCATGTTTGTC-TCATTTAA-AGTATAAACTTTAA-TTCTAAGGAAAATCGTAGAG-A
*** * * * ** *
45830 AGAAAAGCTTTTCTTGCGTAACCAATGCGCCACCAATATT
124 A-AAAA-CTTTTCTCATGAAATCAA--AG-CATTAATATC
* * * * * ** *
45870 GTGCATCCCAATGAA-GATAAAGTGTTCATAGG--GCCCAATCCCTGAAAGAATTGAGATTTTTT
1 GTGTATCCCAA-AAAGGATAATGTGTT--TTGGTTGCCTAATCATTGAAAGAATGGAGATTTTTT
* * * * *
45932 CATAGATCCATGTTTGTCTCATTGAAAGTATAAAGTTTTACTCTAAGGAAAATCGTAGAGAAAAA
63 CGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAA
45997 ACTTTTCTCATGAAATCAAAGCATTAATATC
128 ACTTTTCTCATGAAATCAAAGCATTAATATC
* * * * * * *
46028 GTGTATCCCAAAGAGGAGAATGTGTTTTGCTTGCCTAATCATGGAAAGAATGAAGAATATTAT--
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTGAAAGAATGGAG-ATTTTTTCG
* * * * *** ** * *
46091 AAGAATCAATGTTTGTTTCATCTAACA-TGCGAACTCAAAATATAAGGAAAATCGTAGCA-AGAA
65 TAG-ATCCATGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTAG-AGA-AA
* * * * *
46154 AATCTTTTCT--TGCAAAACCAATGCATCAATTTTC
126 AAACTTTTCTCATG--AAATCAAAGCATTAA-TATC
* * * * * * * *
46188 -TATATCCCAATGAA-GATAACGTGTTATGG-CGCCCAATCATTGAGAGAATGGATATTTTTTCG
1 GTGTATCCCAA-AAAGGATAATGTGTTTTGGTTGCCTAATCATTGAAAGAATGGAGATTTTTTCG
* *
46250 TAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTGATTCTAAGGAAAATGGTAGAGAAAAAAC
65 TAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAAAC
** * *
46315 TTTTCTCATGAAATTGAAGCCTTAATAAC
130 TTTTCTCATGAAATCAAAGCATTAATATC
* * *
46344 GTGTATCCCAAAAAGGAGAATGTGTTTTGGTTGCCTAATCA-TGAAAAGTATGAAGATTTTTAT-
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTG-AAAGAATGGAGATTTTT-TC
* * * ** * * *
46407 -AAGAATCCTTGTTTGTTTCATTTAACA-TACGAAC-TCAAATATAAGGAAAATCGT-G-GCAAG
64 GTAG-ATCCATGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTAGAG-AA-
* * *** *
46467 AAAAGCTTTTCT--TGCATAACCAATGCGCCAATATT
125 AAAA-CTTTTCTCATG-A-AATCAAAGCATTAATATC
* * * * * * * *
46502 GTGCATCCCAATGAA-GATAACGTGTTTATGG-GGCCCAATCACTAAAAGAATGTAGATTTTTTC
1 GTGTATCCCAA-AAAGGATAATGTGTTT-TGGTTGCCTAATCATTGAAAGAATGGAGATTTTTTC
* * * * ** ** * * **
46565 TTAGATTCATGTTTGTTTCATCTAACA-TACGAACTCAAAATATGGGGAAAATCGTAGCA-AGAA
64 GTAGATCCATGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTAG-AGA-AA
* * * * * *
46628 AAGCTTTTCT--TGCAAAACCAATG-GTCAATTTTC
126 AAACTTTTCTCATG--AAATCAAAGCATTAA-TATC
* * * **
46661 -TCTATCCCAAAGAA-GATAACGTGTTTATGG-TGCCCAATCATTGAGGGAATGGAGATTTTTTC
1 GTGTATCCCAAA-AAGGATAATGTGTTT-TGGTTGCCTAATCATTGAAAGAATGGAGATTTTTTC
* * * * * *
46723 GTAGATCCATGTTTGTCTCAATTAAAGTATAAACTTTTATTCTACGAAAAATGGTAAAGAAAAAA
64 GTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAAA
* * * * *
46788 -TTTTCTCACGAAATCAAAGTATTTACATG
129 CTTTTCTCATGAAATCAAAGCATTAATATC
* ** * * ** * *
46817 GTGTACCCCTCAAAGGAGAATGTGTTTTGCTTGCCTAATCAAGGAAAGAATGAAGATTATTAT--
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTGAAAGAATGGAGATT-TTTTCG
* ** ** * * *
46880 AAGAATCCATGTTTG-CTTCATTTAACA-TACGAACTCAAAATATGAGGAAAATCGT-G-GCAAG
65 TAG-ATCCATGTTTGTC-TCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTAGAG-AA-
* * * * * * *
46941 GAAAGC-TTTC-CTTGCAAAACCAATGCGTCAATATT
125 -AAAACTTTTCTCATG--AAATCAAAGCATTAATATC
* * * *
46976 GTGCT-TCCCAATGAA-GATAACGTGTTTATGG-TGCCCAATCATTGAAAGAATCGAGATTTTTT
1 GTG-TATCCCAA-AAAGGATAATGTGTTT-TGGTTGCCTAATCATTGAAAGAATGGAGATTTTTT
* * * * *
47038 CGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGGAAATGGCAGAGAAAAA
63 CGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAA
* * *
47103 ACTTTTGTCATG-AATCAAAGTATTAATATA
128 ACTTTTCTCATGAAATCAAAGCATTAATATC
* * * * * * * * *
47133 ATGTATCCCAAAGAGGAGAATGTGTTTTGCTTGCCTAATGATGGAAAGAATGAAGAATATTAT--
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTGAAAGAATGGAG-ATTTTTTCG
* * ** ** * * *
47196 AAGAATCCATGTTTGTTTC-TTCTAACA-TGCAAACTCAAAATATAAGGAAAATCAT-G-GCAAG
65 TAG-ATCCATGTTTGTCTCATT-TAA-AGTATAAACTTTAATTCTAAGGAAAATCGTAGAG-AA-
* * * *
47257 AAAAGCTTTTCT--TGCAATACCAATGCATCAATTTTC
125 AAAA-CTTTTCTCATG-AA-ATCAAAGCATTAA-TATC
* * *
47293 -TGTATCCCAAAGAA-GATAACGTGTTTGTGG-TGCCCAATCATTGAGAGAATGGAGATTTTTTC
1 GTGTATCCCAAA-AAGGATAATGTGTTT-TGGTTGCCTAATCATTGAAAGAATGGAGATTTTTTC
* ** * **
47355 GTAGATCCAAGTTTGTCTCATTTAAAGTATAAACTTTTTTTCTAAGGAAAATGGTAGAGAAAATC
64 GTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAAA
* *
47420 CTTTTCTCATGAAATCAAAGCATTAAAAAC
129 CTTTTCTCATGAAATCAAAGCATTAATATC
* * * *
47450 GCGTATCCCAAAAAGGAGAATGTGTTTTGGTTGCCTAATCA-TGAAAAGTATGAAGATTTTTAT-
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTG-AAAGAATGGAGATTTTT-TC
* * * ** ** *
47513 -AAGAATCCATGTTTGTTTCATTTCACA-TACGAACTCAAATTATAAGGAAAATCGT-G-GCAAG
64 GTAG-ATCCATGTTTGTCTCATTT-AAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAG-AA-
* * *** *
47574 AAAAGCTTTTCT--TGCATAACCAATGCGCCAATATT
125 AAAA-CTTTTCTCATG-A-AATCAAAGCATTAATATC
* ** * * * * *
47609 TTCCATCCCAATGAA-GATAACGTGTTTATGAG--GCCCAATCACTGAAAGAATGTAGATTTTTT
1 GTGTATCCCAA-AAAGGATAATGTGTTT-TG-GTTGCCTAATCATTGAAAGAATGGAGATTTTTT
* * * * * *
47671 CATAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTACGAAAAATGGTAAAGAAAAA
63 CGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAA
* * * *
47736 ACTTTTTTCAAGAAATCAAAGCATTTACATC
128 ACTTTTCTCATGAAATCAAAGCATTAATATC
* * * * *
47767 GTGTAT--C---------AATGTGTTTTGCTTGCCTAATCCTGGAAAGAATGAAGATTATTAT--
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTGAAAGAATGGAGATT-TTTTCG
* * * * * * * * * *
47819 AAGAATCCATGTTCGTTTCATCTAACA-TACGAACCTTAAAATATGAGGAAAATCGT-G-GCAAG
65 TAG-ATCCATGTTTGTCTCATTTAA-AGTA-TAAACTTTAATTCTAAGGAAAATCGTAGAG-AA-
* * * * *
47881 AAAAGCTTTTCT--TGCAAAACCAATGCGTCAATTTTC
125 AAAA-CTTTTCTCATG--AAATCAAAGCATTAA-TATC
* * * *
47917 -TGTATCCCGAAGAA-GATAACGTGTTTATGG-TGCCCAATCATTGAGAGAATGGAGATATTTTT
1 GTGTATCCC-AAAAAGGATAATGTGTTT-TGGTTGCCTAATCATTGAAAGAATGGAGAT-TTTTT
* * *
47979 -GTAGATCCATGATTGTCTCATTTAAAGTATAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAA
63 CGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAA
* *
48043 ACTTTTCACTTGAAATCAAAGCATTAATATC
128 ACTTTTCTCATGAAATCAAAGCATTAATATC
* * * * * * * * *
48074 GTGTATCCCAAAGATGAGAATGTGTTTTGCTTGCCTAACCATGGAAAGAATGAAGAATATTAT--
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTGAAAGAATGGAG-ATTTTTTCG
* * ** * ** * * *
48137 AAGAATCCATGTTTGTTTCAACT-AA-TATGCGAACTCAAAATATTAGGAAAATCGTAGCA-AGA
65 TAG-ATCCATGTTTGTCTCATTTAAAGTAT--AAACTTTAATTCTAAGGAAAATCGTAG-AGA-A
* * * * * * *
48199 AAAGCTTTACT--TGCAAAACCAATGCGTCAATTTTC
125 AAAACTTTTCTCATG--AAATCAAAGCATTAA-TATC
* * *
48234 -TGTATCCCAATGAA-GATAACGTGTTTATGG-TGCCTAATCATTGAGAGAATGGAG-TTTTTGT
1 GTGTATCCCAA-AAAGGATAATGTGTTT-TGGTTGCCTAATCATTGAAAGAATGGAGATTTTT-T
* *
48295 CGTAGATCCATGTTTGTCTCA--TAAAGTATAAACTTTTATTCTACA-GAAAATGGTA-AGGAAA
63 CGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTA-AGGAAAATCGTAGA-GAAA
* * * *
48356 AAACTTTTCTTACGAAATCAAAGCATTTAGATC
126 AAACTTTTCTCATGAAATCAAAGCATTAATATC
** * ** * * * *
48389 GTGTATCCCACGAAGGATAATTTGTTTTGCATGCCTAATCATGGAAAGAATGAAGATTATTATAG
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTGAAAGAATGGAGATT-TTTTCG
* * * * ** ** * * *
48454 GAAATCC-TGTTTGTTTCATCTAACA-TACGAACTCAAAATATGAGGAAAATCGT-G-GCAAGAA
65 TAGATCCATGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTAGAG-AA-AA
* * ** * * *
48515 TAGCTTTTCT--TGCAAAACCAATCCGTCAATTTTC
127 -AACTTTTCTCATG--AAATCAAAGCATTAA-TATC
* * *
48549 -TGTAT-CCAAAAGAAGATAACGTGTTTATGG-TGCCCAATCATTGAAAGAATGGAGATTTTTTC
1 GTGTATCCCAAAA-AGGATAATGTGTTT-TGGTTGCCTAATCATTGAAAGAATGGAGATTTTTTC
* * *
48611 GTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCTAAGGAAAATGGTAGAGAAAAAA
64 GTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAAA
* * *
48676 CTTTTCACTTGAAATCAAAGCATCAATATC
129 CTTTTCTCATGAAATCAAAGCATTAATATC
* * * * * * * * *
48706 GTGTATCCCAAAGATGAGAATGTGTTTTGCTTGCCTAACCATGGAAAGAATGAAGAATATTAT--
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTGAAAGAATGGAG-ATTTTTTCG
* * * ** *** ** * **
48769 AAGAATCCATATTTGTTTCAACTAACA-TGCGAACTCAAAATAAAAGGAAAATCGTAGCA-AGAA
65 TAG-ATCCATGTTTGTCTCATTTAA-AGTATAAACTTTAATTCTAAGGAAAATCGTAG-AGA-AA
* * * * *
48832 AAGCTTTACT--TGCAAAACAAATGCATCAATTTTC
126 AAACTTTTCTCATG-AAATCAAA-GCATTAA-TATC
* * * * *
48866 -TGTATTCCAATGAA-GATAACGTGTTTATGG-TGCCTAATCGTTGAGAGAATGGAG-TTTTTGT
1 GTGTATCCCAA-AAAGGATAATGTGTTT-TGGTTGCCTAATCATTGAAAGAATGGAGATTTTT-T
* ** *
48927 CGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCTACCGAAAATGGTA-AGGAAAA
63 CGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGA-GAAAA
* *
48991 AACTTTTCTTATGAAATCAAAGCATTTATTTACATC
127 AACTTTTCTCATGAAATCAAAGCA-TTA---ATATC
** * * ** * *
49027 GTGTATCCCACGAAGGAGAATTTGTTTTGCATGCCTAATCATGGAAAGAATGAAGATT
1 GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTGAAAGAATGGAGATT
49085 ATTATAGGAA
Statistics
Matches: 6336, Mismatches: 1775, Indels: 1298
0.67 0.19 0.14
Matches are distributed among these distances:
146 5 0.00
147 52 0.01
148 24 0.00
149 21 0.00
150 2 0.00
151 1 0.00
153 9 0.00
154 89 0.01
155 24 0.00
156 172 0.03
157 598 0.09
158 2352 0.37
159 2341 0.37
160 434 0.07
161 76 0.01
162 119 0.02
163 13 0.00
164 4 0.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (158 bp):
GTGTATCCCAAAAAGGATAATGTGTTTTGGTTGCCTAATCATTGAAAGAATGGAGATTTTTTCGT
AGATCCATGTTTGTCTCATTTAAAGTATAAACTTTAATTCTAAGGAAAATCGTAGAGAAAAAACT
TTTCTCATGAAATCAAAGCATTAATATC
Found at i:47589 original size:317 final size:317
Alignment explanation
Indices: 46572--49097 Score: 3493
Period size: 317 Copynumber: 8.0 Consensus size: 317
46562 TTCTTAGATT
* *
46572 CATGTTTGTTTCATCTAACATACGAACTCAAAATATGGGGAAAATCGTAGCAAGAAAAGCTTTTC
1 CATGTTTGTTTCATCTAACATACGAACTCAAAATATGAGGAAAATCGTGGCAAGAAAAGCTTTTC
*
46637 TTGCAAAACCAATG-GTCAATTTTCTCTATCCCAAAGAAGATAACGTGTTTATGGTGCCCAATCA
66 TTGCAAAACCAATGCGTCAATTTTCTGTATCCCAAAGAAGATAACGTGTTTATGGTGCCCAATCA
* *
46701 TTGAGGGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCAATTAAAGTATAAACTTTTATTCT
131 TTGAGAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCT
* * * * * * * * **
46766 ACGAAAAATGGTAAAGAAAAAA-TTTTCTCACGAAATCAAAGTATTTACATGGTGTACCCCTCAA
196 AAGGAAAATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAACATCGTGTATCCCAAAA
*
46830 AGGAGAATGTGTTTTGCTTGCCTAATCAAGGAAAGAATGAAGATTATTATAAGAATC
261 AGGAGAATGTGTTTTGCTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATC
* * * *
46887 CATGTTTGCTTCATTTAACATACGAACTCAAAATATGAGGAAAATCGTGGCAAGGAAAGCTTTCC
1 CATGTTTGTTTCATCTAACATACGAACTCAAAATATGAGGAAAATCGTGGCAAGAAAAGCTTTTC
* * *
46952 TTGCAAAACCAATGCGTCAATATTGTGCT-TCCCAATGAAGATAACGTGTTTATGGTGCCCAATC
66 TTGCAAAACCAATGCGTCAATTTTCTG-TATCCCAAAGAAGATAACGTGTTTATGGTGCCCAATC
* * *
47016 ATTGAAAGAATCGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTC
130 ATTGAGAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTC
* * * * * **
47081 TAAGGGAAATGGCAGAGAAAAAACTTTTGTCATG-AATCAAAGTATTAATATAATGTATCCCAAA
195 TAAGGAAAATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAACATCGTGTATCCCAAA
* * *
47145 GAGGAGAATGTGTTTTGCTTGCCTAATGATGGAAAGAATGAAGAATATTATAAGAATC
260 AAGGAGAATGTGTTTTGCTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATC
* * * * *
47203 CATGTTTGTTTCTTCTAACATGCAAACTCAAAATATAAGGAAAATCATGGCAAGAAAAGCTTTTC
1 CATGTTTGTTTCATCTAACATACGAACTCAAAATATGAGGAAAATCGTGGCAAGAAAAGCTTTTC
* * *
47268 TTGCAATACCAATGCATCAATTTTCTGTATCCCAAAGAAGATAACGTGTTTGTGGTGCCCAATCA
66 TTGCAAAACCAATGCGTCAATTTTCTGTATCCCAAAGAAGATAACGTGTTTATGGTGCCCAATCA
* *
47333 TTGAGAGAATGGAGATTTTTTCGTAGATCCAAGTTTGTCTCATTTAAAGTATAAACTTTTTTTCT
131 TTGAGAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCT
** * * *
47398 AAGGAAAATGGTAGAGAAAATCCTTTTCTCATGAAATCAAAGCATTAAAAACGCGTATCCCAAAA
196 AAGGAAAATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAACATCGTGTATCCCAAAA
* * * *
47463 AGGAGAATGTGTTTTGGTTGCCTAATCATGAAAAGTATGAAGATTTTTATAAGAATC
261 AGGAGAATGTGTTTTGCTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATC
* * * *
47520 CATGTTTGTTTCATTTCACATACGAACTCAAATTATAAGGAAAATCGTGGCAAGAAAAGCTTTTC
1 CATGTTTGTTTCATCTAACATACGAACTCAAAATATGAGGAAAATCGTGGCAAGAAAAGCTTTTC
* * ** *
47585 TTGCATAACCAATGCGCCAATATTT-TCCATCCCAATGAAGATAACGTGTTTATGAG-GCCCAAT
66 TTGCAAAACCAATGCGTCAAT-TTTCTGTATCCCAAAGAAGATAACGTGTTTATG-GTGCCCAAT
* * * *
47648 CACTGAAAGAATGTAGATTTTTTCATAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATT
129 CATTGAGAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATT
* * * * * *
47713 CTACGAAAAATGGTAAAGAAAAAACTTTTTTCAAGAAATCAAAGCATTTACATCGTGTAT--C--
194 CTAAGGAAAATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAACATCGTGTATCCCAA
*
47774 -------AATGTGTTTTGCTTGCCTAATCCTGGAAAGAATGAAGATTATTATAAGAATC
259 AAAGGAGAATGTGTTTTGCTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATC
* *
47826 CATGTTCGTTTCATCTAACATACGAACCTTAAAATATGAGGAAAATCGTGGCAAGAAAAGCTTTT
1 CATGTTTGTTTCATCTAACATACGAA-CTCAAAATATGAGGAAAATCGTGGCAAGAAAAGCTTTT
*
47891 CTTGCAAAACCAATGCGTCAATTTTCTGTATCCCGAAGAAGATAACGTGTTTATGGTGCCCAATC
65 CTTGCAAAACCAATGCGTCAATTTTCTGTATCCCAAAGAAGATAACGTGTTTATGGTGCCCAATC
*
47956 ATTGAGAGAATGGAGATATTTTT-GTAGATCCATGATTGTCTCATTTAAAGTATAAACTTTTATT
130 ATTGAGAGAATGGAGAT-TTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATT
* * *
48020 CTAAGGAAAATGGTAGAGAAAAAACTTTTCACTTGAAATCAAAGCATTAATATCGTGTATCCCAA
194 CTAAGGAAAATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAACATCGTGTATCCCAA
* * * *
48085 AGATGAGAATGTGTTTTGCTTGCCTAACCATGGAAAGAATGAAGAATATTATAAGAATC
259 AAAGGAGAATGTGTTTTGCTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATC
* * * * * *
48144 CATGTTTGTTTCAACTAATATGCGAACTCAAAATATTAGGAAAATCGTAGCAAGAAAAGCTTTAC
1 CATGTTTGTTTCATCTAACATACGAACTCAAAATATGAGGAAAATCGTGGCAAGAAAAGCTTTTC
* *
48209 TTGCAAAACCAATGCGTCAATTTTCTGTATCCCAATGAAGATAACGTGTTTATGGTGCCTAATCA
66 TTGCAAAACCAATGCGTCAATTTTCTGTATCCCAAAGAAGATAACGTGTTTATGGTGCCCAATCA
48274 TTGAGAGAATGGAG-TTTTTGTCGTAGATCCATGTTTGTCTCA--TAAAGTATAAACTTTTATTC
131 TTGAGAGAATGGAGATTTTT-TCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTC
* * * *
48336 TACA-GAAAATGGTA-AGGAAAAAACTTTTCTTACGAAATCAAAGCATTTAGATCGTGTATCCCA
195 TA-AGGAAAATGGTAGA-GAAAAAACTTTTCTCATGAAATCAAAGCATTAACATCGTGTATCCCA
** * * * *
48399 CGAAGGATAATTTGTTTTGCATGCCTAATCATGGAAAGAATGAAGATTATTATAGGAAATC
258 AAAAGGAGAATGTGTTTTGCTTGCCTAATCATGGAAAGAATGAAGATTATTATAAG-AATC
*
48460 C-TGTTTGTTTCATCTAACATACGAACTCAAAATATGAGGAAAATCGTGGCAAGAATAGCTTTTC
1 CATGTTTGTTTCATCTAACATACGAACTCAAAATATGAGGAAAATCGTGGCAAGAAAAGCTTTTC
* *
48524 TTGCAAAACCAATCCGTCAATTTTCTGTATCCAAAAGAAGATAACGTGTTTATGGTGCCCAATCA
66 TTGCAAAACCAATGCGTCAATTTTCTGTATCCCAAAGAAGATAACGTGTTTATGGTGCCCAATCA
* *
48589 TTGAAAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTGTAAACTTTTATTCT
131 TTGAGAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCT
* * * * *
48654 AAGGAAAATGGTAGAGAAAAAACTTTTCACTTGAAATCAAAGCATCAATATCGTGTATCCCAAAG
196 AAGGAAAATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAACATCGTGTATCCCAAAA
* * *
48719 ATGAGAATGTGTTTTGCTTGCCTAACCATGGAAAGAATGAAGAATATTATAAGAATC
261 AGGAGAATGTGTTTTGCTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATC
* * * ** * *
48776 CATATTTGTTTCAACTAACATGCGAACTCAAAATAAAAGGAAAATCGTAGCAAGAAAAGCTTTAC
1 CATGTTTGTTTCATCTAACATACGAACTCAAAATATGAGGAAAATCGTGGCAAGAAAAGCTTTTC
* * * * * *
48841 TTGCAAAACAAATGCATCAATTTTCTGTATTCCAATGAAGATAACGTGTTTATGGTGCCTAATCG
66 TTGCAAAACCAATGCGTCAATTTTCTGTATCCCAAAGAAGATAACGTGTTTATGGTGCCCAATCA
48906 TTGAGAGAATGGAG-TTTTTGTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTC
131 TTGAGAGAATGGAGATTTTT-TCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTC
** *
48970 TACCGAAAATGGTA-AGGAAAAAACTTTTCTTATGAAATCAAAGCATTTATTTACATCGTGTATC
195 TAAGGAAAATGGTAGA-GAAAAAACTTTTCTCATGAAATCAAAGCA-TTA---ACATCGTGTATC
** * * *
49034 CCACGAAGGAGAATTTGTTTTGCATGCCTAATCATGGAAAGAATGAAGATTATTATAGGAATC
255 CCAAAAAGGAGAATGTGTTTTGCTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATC
49097 C
1 C
49098 CTGTGAAAGC
Statistics
Matches: 1943, Mismatches: 229, Indels: 72
0.87 0.10 0.03
Matches are distributed among these distances:
306 74 0.04
307 192 0.10
308 5 0.00
309 1 0.00
314 1 0.00
315 350 0.18
316 424 0.22
317 752 0.39
318 78 0.04
321 66 0.03
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (317 bp):
CATGTTTGTTTCATCTAACATACGAACTCAAAATATGAGGAAAATCGTGGCAAGAAAAGCTTTTC
TTGCAAAACCAATGCGTCAATTTTCTGTATCCCAAAGAAGATAACGTGTTTATGGTGCCCAATCA
TTGAGAGAATGGAGATTTTTTCGTAGATCCATGTTTGTCTCATTTAAAGTATAAACTTTTATTCT
AAGGAAAATGGTAGAGAAAAAACTTTTCTCATGAAATCAAAGCATTAACATCGTGTATCCCAAAA
AGGAGAATGTGTTTTGCTTGCCTAATCATGGAAAGAATGAAGATTATTATAAGAATC
Found at i:49882 original size:19 final size:20
Alignment explanation
Indices: 49842--49893 Score: 88
Period size: 19 Copynumber: 2.6 Consensus size: 20
49832 TACAAGCCAA
49842 TGTATCGATACATATTTTTTG
1 TGTATCGATACATA-TTTTTG
49863 TGTATCGATACATA-TTTTG
1 TGTATCGATACATATTTTTG
49882 TGTATCGATACA
1 TGTATCGATACA
49894 AGTTTGGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 17 0.55
21 14 0.45
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (20 bp):
TGTATCGATACATATTTTTG
Found at i:52441 original size:13 final size:13
Alignment explanation
Indices: 52423--52461 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
52413 ATAATCCCCC
52423 TGTATCGATACAA
1 TGTATCGATACAA
*
52436 TGTATCGATACAT
1 TGTATCGATACAA
52449 TGTATCGATACAA
1 TGTATCGATACAA
52462 AGAAAAATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:58616 original size:17 final size:18
Alignment explanation
Indices: 58594--58637 Score: 81
Period size: 17 Copynumber: 2.5 Consensus size: 18
58584 TACAAGCCAA
58594 TGTATCGATCATA-TTTG
1 TGTATCGATCATATTTTG
58611 TGTATCGATCATATTTTG
1 TGTATCGATCATATTTTG
58629 TGTATCGAT
1 TGTATCGAT
58638 ACAAGTTTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 13 0.50
18 13 0.50
ACGTcount: A:0.23, C:0.11, G:0.18, T:0.48
Consensus pattern (18 bp):
TGTATCGATCATATTTTG
Done.