genome.fa.s609.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold609
Parameters: 2 7 7 80 10 50 1000
Length:  125725

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8769--8793	13	1.9	13	100	0	50	32	16	20	32	1.94
13473--13507	18	1.9	18	94	0	61	20	31	5	42	1.75
18155--18219	33	1.9	35	84	6	89	33	6	4	55	1.45
19989--20018	15	2.0	15	93	0	51	50	0	3	46	1.18
20522--20570	12	4.2	12	73	19	50	46	2	2	48	1.25
22476--22575	22	4.4	23	79	15	93	46	0	3	51	1.16
22630--22670	14	2.9	14	81	0	55	68	0	0	31	0.90
22616--22662	18	2.6	18	86	6	60	61	0	0	38	0.96
22597--22712	45	2.6	44	80	14	116	62	0	0	36	1.08
34827--34897	20	3.6	20	78	3	72	33	14	14	38	1.86
34826--34877	19	2.7	20	81	3	70	30	15	13	40	1.86
39632--39770	67	2.1	67	83	1	170	29	12	18	38	1.88
45128--45153	13	2.0	13	100	0	52	38	15	15	30	1.88
47327--47371	21	2.1	21	84	8	56	53	4	20	22	1.63
49175--49205	15	2.1	15	93	0	53	48	16	22	12	1.80
51284--51309	13	2.0	13	100	0	52	30	15	15	38	1.88
53856--53881	13	2.0	13	100	0	52	38	15	15	30	1.88
57501--57540	11	3.8	10	90	9	62	87	12	0	0	0.54
57500--57540	21	1.9	21	90	5	64	87	12	0	0	0.53
57500--57547	21	2.3	20	83	16	62	87	10	2	0	0.62
57503--57559	20	2.9	19	84	7	69	85	8	5	0	0.72
58522--58969	61	7.3	61	81	7	471	27	25	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58522--58955	182	2.4	184	81	7	490	27	24	17	30	1.97
58522--58973	121	3.7	122	83	7	499	27	24	17	29	1.97
58952--59119	42	4.0	41	78	11	119	19	23	13	43	1.86
58984--59123	40	3.4	42	79	7	153	17	25	10	46	1.80
58984--59101	42	2.8	42	83	3	150	19	25	12	42	1.87
59034--59160	34	3.6	34	77	7	101	20	25	11	42	1.86
59760--59858	50	2.0	50	87	0	144	26	16	15	42	1.87
61569--62292	79	9.3	79	79	7	604	29	24	11	34	1.91
61596--62293	236	3.0	234	82	6	810	29	23	11	34	1.91
61569--62344	158	5.0	157	77	6	694	29	23	12	34	1.91
66030--66515	79	6.2	78	80	5	433	29	23	11	35	1.90
66030--66498	157	3.0	158	81	4	518	29	23	11	34	1.91
66455--66508	28	1.9	28	96	0	99	24	25	14	35	1.94
67393--67443	20	2.7	19	87	6	68	31	15	13	39	1.87
67476--67527	20	2.6	20	84	0	59	40	13	17	28	1.87
67923--67966	23	1.9	23	86	9	63	29	6	22	40	1.80
69739--69820	4	20.5	4	97	0	155	24	1	0	74	0.89
74767--74791	13	1.9	13	100	0	50	32	16	16	36	1.90
79493--79556	33	1.9	32	84	12	85	32	18	10	37	1.86
79606--79659	20	2.8	20	82	2	74	37	16	16	29	1.91
80214--80252	19	2.1	19	90	4	62	12	30	0	56	1.37
82233--82273	20	2.2	18	86	8	55	53	19	2	24	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86020--86059	21	1.9	21	89	0	62	25	12	5	57	1.55
88282--88312	13	2.4	13	94	0	53	35	12	16	35	1.87
88262--88328	33	2.0	33	86	11	93	32	19	11	35	1.88
88378--88430	19	2.7	20	85	5	72	35	16	16	30	1.92
91133--91172	17	2.4	16	92	8	71	82	0	0	17	0.67
92161--92548	61	6.4	61	78	6	374	26	26	18	28	1.98
92161--92539	120	3.1	120	77	7	372	26	26	18	29	1.98
92525--92795	41	6.5	42	81	7	232	22	22	12	42	1.87
93426--93557	50	2.7	50	88	3	187	27	18	13	40	1.88
95798--96204	79	5.2	79	82	2	406	27	24	13	34	1.92
95798--96196	157	2.5	158	82	3	457	27	24	13	34	1.93
97238--97304	20	3.7	20	70	25	76	40	10	17	31	1.84
97229--97304	33	2.3	33	97	0	143	39	11	17	31	1.85
97229--97282	13	4.6	13	70	25	57	38	12	16	31	1.87
98759--98801	22	2.0	23	90	9	72	32	9	6	51	1.61
99869--99929	24	2.5	24	83	0	86	24	21	8	45	1.78
99983--100029	20	2.3	20	72	13	51	38	12	17	31	1.87
100385--100477	36	2.7	34	82	12	120	31	13	25	29	1.94
100788--100830	21	2.0	21	82	8	52	34	13	23	27	1.93
103145--103212	33	2.1	32	88	2	100	33	11	16	38	1.85
103167--103192	13	2.0	13	100	0	52	38	15	15	30	1.88
103249--103297	20	2.5	20	89	0	71	30	16	12	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103284--103320	13	2.8	13	100	0	74	29	16	16	37	1.90
103876--103919	21	2.0	21	86	4	61	31	31	2	34	1.70
105602--105642	22	2.0	21	86	13	59	41	4	21	31	1.74
105774--105824	13	3.9	13	94	0	93	33	15	19	31	1.93
111927--111952	13	2.0	13	100	0	52	38	15	15	30	1.88
111905--111972	33	2.1	33	88	2	102	36	11	14	36	1.83
112005--112057	20	2.7	20	90	0	79	30	15	13	41	1.85
112463--112489	13	2.1	13	100	0	54	29	14	14	40	1.86
112475--112530	19	2.9	19	89	5	85	33	12	17	35	1.88
112475--112529	20	2.8	20	91	2	85	32	12	18	36	1.88
121305--121331	13	2.1	13	100	0	54	29	14	14	40	1.86
121317--121372	19	2.9	19	89	5	85	33	12	17	35	1.88
121317--121371	20	2.8	20	91	2	85	32	12	18	36	1.88
121400--121469	33	2.1	33	86	7	97	35	12	17	34	1.88
123327--123366	21	2.0	21	95	5	73	50	5	0	45	1.23
123366--123429	8	8.0	8	73	13	51	46	1	0	51	1.10
123803--123856	13	4.2	13	75	20	51	44	0	0	55	0.99
123805--123856	12	4.1	13	75	12	54	44	0	0	55	0.99
123803--123856	25	2.1	27	83	13	69	44	0	0	55	0.99
123829--123916	20	4.2	20	72	11	70	44	1	0	54	1.07
123847--123884	10	3.8	10	86	6	51	42	2	0	55	1.14
123814--123869	12	4.6	12	78	17	53	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125005--125077	28	2.6	28	83	10	87	47	0	0	52	1.00

Tables:   1

The End!