Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold610
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 40637
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33
Found at i:654 original size:16 final size:17
Alignment explanation
Indices: 622--654 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
612 ATCTTTGCTC
*
622 AAAGGAGAATCGAGCAA
1 AAAGGACAATCGAGCAA
639 AAAGGACAAT-GAGCAA
1 AAAGGACAATCGAGCAA
655 GTAATATGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.55, C:0.12, G:0.27, T:0.06
Consensus pattern (17 bp):
AAAGGACAATCGAGCAA
Found at i:5093 original size:20 final size:21
Alignment explanation
Indices: 5014--5092 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 21
5004 AATGTCCAAA
*
5014 ATGTATCGATACATGTTTT-T
1 ATGTATCGATACATCTTTTCT
* *
5034 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACATCT----TTTCT
5059 ATGTATCGATACAT-TTTTCT
1 ATGTATCGATACATCTTTTCT
*
5079 TTGTATCGATACAT
1 ATGTATCGATACAT
5093 TGTATCGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 31 0.65
24 3 0.06
25 14 0.29
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTCT
Found at i:5097 original size:13 final size:13
Alignment explanation
Indices: 5079--5117 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
5069 ACATTTTTCT
5079 TTGTATCGATACA
1 TTGTATCGATACA
5092 TTGTATCGATACA
1 TTGTATCGATACA
*
5105 CTGTATCGATACA
1 TTGTATCGATACA
5118 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:7551 original size:20 final size:20
Alignment explanation
Indices: 7528--7600 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
7518 ACAATTCAAA
7528 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
7548 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
7569 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
7589 GTATCGATACAT
1 GTATCGATACAT
7601 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:7572 original size:21 final size:21
Alignment explanation
Indices: 7546--7621 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
7536 ACATGTTGCA
7546 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
7567 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
7587 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
7608 ATGTATCGATACAT
1 ATGTATCGATACAT
7622 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:7579 original size:41 final size:41
Alignment explanation
Indices: 7528--7621 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
7518 ACAATTCAAA
*
7528 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
7569 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
7610 GTATCGATACAT
1 GTATCGATACAT
7622 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:7678 original size:13 final size:13
Alignment explanation
Indices: 7660--7685 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7650 TACAGCAAGT
7660 ATGTATCGATACA
1 ATGTATCGATACA
7673 ATGTATCGATACA
1 ATGTATCGATACA
7686 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:9267 original size:21 final size:22
Alignment explanation
Indices: 9243--9296 Score: 78
Period size: 20 Copynumber: 2.6 Consensus size: 22
9233 ACATGGTCCA
9243 GTATCGATACATTTCAA-GCAT
1 GTATCGATACATTTCAATGCAT
*
9264 GTATCGATACA--TCAATTCAT
1 GTATCGATACATTTCAATGCAT
9284 GTATCGATACATT
1 GTATCGATACATT
9297 AACTTATTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (22 bp):
GTATCGATACATTTCAATGCAT
Found at i:9309 original size:21 final size:20
Alignment explanation
Indices: 9243--9315 Score: 78
Period size: 21 Copynumber: 3.5 Consensus size: 20
9233 ACATGGTCCA
*
9243 GTATCGATACATTTCAA-GCAT
1 GTATCGATACA--TCAATTCAT
9264 GTATCGATACATCAATTCAT
1 GTATCGATACATCAATTCAT
*
9284 GTATCGATACATTAACTT-ATT
1 GTATCGATACATCAA-TTCA-T
9305 GTATCGATACA
1 GTATCGATACA
9316 AATTTTAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
19 4 0.09
20 18 0.38
21 25 0.53
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (20 bp):
GTATCGATACATCAATTCAT
Found at i:11042 original size:19 final size:20
Alignment explanation
Indices: 10997--11048 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
10987 TTACAAGCCA
**
10997 ATGTATCGATACATTTTGGG
1 ATGTATCGATACATAATGGG
*
11017 ATGTATCGATACATAATGTG
1 ATGTATCGATACATAATGGG
11037 -TGTATCGATACA
1 ATGTATCGATACA
11049 AATAGTTAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATAATGGG
Found at i:11197 original size:21 final size:22
Alignment explanation
Indices: 11167--11218 Score: 88
Period size: 21 Copynumber: 2.4 Consensus size: 22
11157 ACTATTCATT
*
11167 ACTGTTCATGTATCGATACATC
1 ACTGTTCATGTATCGATACATA
11189 ACT-TTCATGTATCGATACATA
1 ACTGTTCATGTATCGATACATA
11210 ACTGTTCAT
1 ACTGTTCAT
11219 AGTCATTGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
21 20 0.71
22 8 0.29
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (22 bp):
ACTGTTCATGTATCGATACATA
Found at i:13420 original size:72 final size:72
Alignment explanation
Indices: 13302--13437 Score: 168
Period size: 72 Copynumber: 1.9 Consensus size: 72
13292 TTTAAACTCA
* * * *
13302 AAAATGAAAATGAATTAATAAGTTTAGAAAAAAATACCCTTGAAAAGAA-ATTAAGTGAATTAGA
1 AAAATGAAAATAAATCAATAAGTTTAGAAAAAAATACCCTTAAAAAGAAGA-TAAATGAATTAGA
13366 AAAGTTAC
65 AAAGTTAC
* * * *
13374 AAAATGAAAATAAATCAATGAGTTTAGAAAATAAT-TCTTCTAAAAAGAAGATAAATGAATTAGA
1 AAAATGAAAATAAATCAATAAGTTTAGAAAAAAATACCCT-TAAAAAGAAGATAAATGAATTAGA
13438 GGATAAAAGA
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
71 2 0.04
72 51 0.94
73 1 0.02
ACGTcount: A:0.56, C:0.05, G:0.13, T:0.26
Consensus pattern (72 bp):
AAAATGAAAATAAATCAATAAGTTTAGAAAAAAATACCCTTAAAAAGAAGATAAATGAATTAGAA
AAGTTAC
Found at i:17022 original size:52 final size:52
Alignment explanation
Indices: 16944--17072 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
16934 CGAAATATGA
* * *
16944 AAATTTGCTTGCATGTATCGATACATTTAATAGTGTATCAATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATATATCAATACATCTGGGC
* *
16996 AAATTTGCCTGCATGTATCGATACATTTTATAATATATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATATATCAATACATCTGGGC
17048 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
17073 AAGATTAGTG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAATATATCAATACATCTGGGC
Found at i:17087 original size:52 final size:52
Alignment explanation
Indices: 16944--17092 Score: 201
Period size: 52 Copynumber: 2.9 Consensus size: 52
16934 CGAAATATGA
* * * *
16944 AAATTTGCTTGCATGTATCGATACATTTAATAGTGTATCAATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACAATTATTAGTGTATCGATACATCTGGGC
* * *
16996 AAATTTGCCTGCATGTATCGATAC-ATTTTATAATATATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACAATTAT-TAGTGTATCGATACATCTGGGC
**
17048 AAATTTGCCTGCATGTATCGATACAAAGATTAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACAATTATTAGTGTATCGATACA
17093 ATGTATCGAT
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
51 2 0.02
52 79 0.95
53 2 0.02
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACAATTATTAGTGTATCGATACATCTGGGC
Found at i:17099 original size:13 final size:13
Alignment explanation
Indices: 17081--17105 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17071 CAAAGATTAG
17081 TGTATCGATACAA
1 TGTATCGATACAA
17094 TGTATCGATACA
1 TGTATCGATACA
17106 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:17183 original size:33 final size:33
Alignment explanation
Indices: 17146--17212 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
17136 AGTAGCTTAA
17146 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
17179 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
17212 A
1 A
17213 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:17186 original size:13 final size:13
Alignment explanation
Indices: 17168--17192 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17158 CAAAAAAATA
17168 TGTATCGATACAT
1 TGTATCGATACAT
17181 TGTATCGATACA
1 TGTATCGATACA
17193 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:18572 original size:13 final size:13
Alignment explanation
Indices: 18554--18578 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18544 TTTTCCAAAT
18554 TGTATCGATACAA
1 TGTATCGATACAA
18567 TGTATCGATACA
1 TGTATCGATACA
18579 TTACTTCAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:20293 original size:20 final size:20
Alignment explanation
Indices: 20267--20320 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
20257 AACCCTGAAA
20267 AGTATCGATACACATTTAAAT
1 AGTATCGATACACA-TTAAAT
* **
20288 -GTATCGATACAGATTGCAT
1 AGTATCGATACACATTAAAT
20307 AGTATCGATACACA
1 AGTATCGATACACA
20321 CAATATGTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 4 0.14
20 24 0.86
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.30
Consensus pattern (20 bp):
AGTATCGATACACATTAAAT
Found at i:20332 original size:19 final size:19
Alignment explanation
Indices: 20308--20390 Score: 70
Period size: 19 Copynumber: 4.6 Consensus size: 19
20298 AGATTGCATA
20308 GTATCGATACACACAATAT
1 GTATCGATACACACAATAT
* * *
20327 GTATCGATATAGGACATTA-
1 GTATCGATACA-CACAATAT
*
20346 GTA--G-TAGC-CA-AATTT
1 GTATCGATA-CACACAATAT
20361 GTATCGATACACACAATAT
1 GTATCGATACACACAATAT
20380 GTATCGATACA
1 GTATCGATACA
20391 GGTCATTGGC
Statistics
Matches: 48, Mismatches: 8, Indels: 16
0.67 0.11 0.22
Matches are distributed among these distances:
14 2 0.04
15 4 0.08
16 2 0.04
17 3 0.06
18 4 0.08
19 28 0.58
20 5 0.10
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.29
Consensus pattern (19 bp):
GTATCGATACACACAATAT
Found at i:20388 original size:53 final size:53
Alignment explanation
Indices: 20308--20443 Score: 227
Period size: 53 Copynumber: 2.6 Consensus size: 53
20298 AGATTGCATA
* *
20308 GTATCGATACACACAATATGTATCGATATAGGACATTAGTAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACATTAGCAGTAGCCAAATTT
* *
20361 GTATCGATACACACAATATGTATCGATACAGGTCATTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACATTAGCAGTAGCCAAATTT
*
20414 GTATCGATACACATAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
20444 TTGGAAGTAG
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 78 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACATTAGCAGTAGCCAAATTT
Found at i:20517 original size:22 final size:20
Alignment explanation
Indices: 20467--20519 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 20
20457 AATCTCATTT
* *
20467 TCACTGTTCATTACTATTCA
1 TCACTGTTCATTACGATACA
*
20487 TTACTGTTCATGTATCGATACA
1 TCACTGTTCAT-TA-CGATACA
20509 TCACTGTTCAT
1 TCACTGTTCAT
20520 ACTATTCATG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 10 0.37
21 2 0.07
22 15 0.56
ACGTcount: A:0.25, C:0.23, G:0.09, T:0.43
Consensus pattern (20 bp):
TCACTGTTCATTACGATACA
Found at i:21133 original size:34 final size:35
Alignment explanation
Indices: 21071--21137 Score: 93
Period size: 37 Copynumber: 1.9 Consensus size: 35
21061 CTAAGTGATT
*
21071 GAGAGGTTCTATCTTTGCCTTTGAGAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCC-TTGAGAAAGATAGAGA
21107 GAGAGGTTTCTATCTTAGCC-TG-GAAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTGAGAAAGATAG
21138 TGTTGTAAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 9 0.31
35 2 0.07
36 6 0.21
37 12 0.41
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTGAGAAAGATAGAGA
Found at i:23098 original size:13 final size:13
Alignment explanation
Indices: 23080--23117 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
23070 ATAAACCCTT
23080 TGTATCGATACAC
1 TGTATCGATACAC
23093 TGTATCGATACAAC
1 TGTATCGATAC-AC
23107 -GTATCGATACA
1 TGTATCGATACA
23118 GAGAAAGCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 1 0.04
13 21 0.88
14 2 0.08
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:29256 original size:24 final size:24
Alignment explanation
Indices: 29210--29259 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
29200 TTTGGTAAGA
*
29210 TTGATTTTCATTTAACTTGATAAT
1 TTGATTTTCATTTAACTTAATAAT
*
29234 TTGATTTTTATTTATA-TTAATAAT
1 TTGATTTTCATTTA-ACTTAATAAT
29258 TT
1 TT
29260 TGCTTTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 22 0.96
25 1 0.04
ACGTcount: A:0.30, C:0.04, G:0.06, T:0.60
Consensus pattern (24 bp):
TTGATTTTCATTTAACTTAATAAT
Found at i:30811 original size:21 final size:21
Alignment explanation
Indices: 30766--30812 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
30756 TCAATTTCAA
* *
30766 CAGGAAACAAGAGCCAACATT
1 CAGGAAACAAGAGACAACATC
30787 CAGGAAACAAG-GACAAGCATC
1 CAGGAAACAAGAGACAA-CATC
30808 CAGGA
1 CAGGA
30813 TTTAGGCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.47, C:0.23, G:0.23, T:0.06
Consensus pattern (21 bp):
CAGGAAACAAGAGACAACATC
Found at i:36025 original size:10 final size:10
Alignment explanation
Indices: 36010--36065 Score: 69
Period size: 10 Copynumber: 5.6 Consensus size: 10
36000 TGGCAATTGT
36010 AAAAAGAAAA
1 AAAAAGAAAA
36020 AAAAAGAAAA
1 AAAAAGAAAA
*
36030 AAAAGGTAAAA
1 AAAAAG-AAAA
*
36041 AAAAACAAAA
1 AAAAAGAAAA
*
36051 AAACA-AAAA
1 AAAAAGAAAA
36060 AAAAAG
1 AAAAAG
36066 TGAAGATTTG
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
9 8 0.21
10 23 0.59
11 8 0.21
ACGTcount: A:0.86, C:0.04, G:0.09, T:0.02
Consensus pattern (10 bp):
AAAAAGAAAA
Found at i:36029 original size:9 final size:9
Alignment explanation
Indices: 36010--36062 Score: 54
Period size: 9 Copynumber: 5.6 Consensus size: 9
36000 TGGCAATTGT
36010 AAAAAGAAAA
1 AAAAAG-AAA
36020 AAAAAGAAA
1 AAAAAGAAA
36029 AAAAAGGTAAA
1 AAAAA-G-AAA
36040 AAAAA-ACAA
1 AAAAAGA-AA
*
36049 AAAAACAAA
1 AAAAAGAAA
36058 AAAAA
1 AAAAA
36063 AAGTGAAGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
8 1 0.03
9 22 0.56
10 8 0.21
11 8 0.21
ACGTcount: A:0.87, C:0.04, G:0.08, T:0.02
Consensus pattern (9 bp):
AAAAAGAAA
Done.