genome.fa.s613.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold613
Parameters: 2 7 7 80 10 50 1000
Length:  121006

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9619--9765	28	5.0	30	80	12	139	31	27	16	23	1.96
9921--10047	47	2.8	46	83	3	148	20	24	21	33	1.97
15456--15480	2	12.5	2	100	0	50	48	0	0	52	1.00
15778--15856	36	2.2	36	97	2	149	40	15	6	37	1.72
21334--21389	29	1.9	29	92	0	94	32	7	25	35	1.83
24883--24948	27	2.4	27	85	7	80	24	6	21	48	1.72
24938--25002	25	2.7	24	88	7	87	26	7	21	44	1.79
24938--25004	24	2.7	25	88	6	93	25	7	22	44	1.78
27552--27597	21	2.1	22	88	4	67	32	19	28	19	1.96
29475--29599	27	4.9	24	74	13	97	21	7	24	46	1.76
29477--29547	27	2.6	27	88	6	99	22	7	23	46	1.76
30531--30569	3	13.0	3	88	0	60	64	2	2	30	1.21
32433--32474	2	21.0	2	100	0	84	50	0	0	50	1.00
36760--36789	2	15.0	2	92	0	51	46	0	3	50	1.18
37274--37315	22	1.9	22	90	9	68	35	0	0	64	0.94
43372--43458	3	31.0	3	71	21	64	36	0	0	63	0.95
43361--43461	8	13.0	8	73	19	81	37	0	0	62	0.96
43361--43460	29	3.4	29	82	14	109	38	0	0	62	0.96
44705--44779	20	3.8	20	78	0	87	34	13	12	40	1.81
44705--44782	40	2.0	39	87	2	111	34	12	12	39	1.82
45691--45746	22	2.5	23	94	5	105	17	10	8	62	1.52
45699--45753	22	2.6	21	88	5	58	20	9	9	61	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49594--49635	22	1.9	22	90	0	66	38	35	2	23	1.68
49584--49645	22	2.9	22	80	2	63	40	32	1	25	1.66
52406--52484	38	2.1	38	100	0	158	25	13	5	55	1.59
57924--57974	23	2.2	23	92	0	84	33	17	7	41	1.79
60258--60310	16	3.3	16	86	0	79	39	1	16	41	1.60
60337--60383	16	2.9	16	83	0	67	42	12	10	34	1.78
60443--60484	16	2.6	16	84	0	57	35	4	11	47	1.61
60443--60502	32	1.9	31	83	10	77	38	6	10	45	1.64
61975--62045	29	2.6	27	73	20	67	45	0	0	54	0.99
66556--66584	2	14.5	2	100	0	58	51	0	0	48	1.00
75077--75125	24	2.0	25	88	4	73	38	0	4	57	1.18
75232--75299	30	2.3	28	85	12	84	52	0	11	35	1.38
75704--75755	27	1.9	27	92	0	86	32	3	0	63	1.12
76074--76130	21	2.7	21	75	21	57	49	5	0	45	1.24
76132--76159	14	2.0	14	100	0	56	57	7	7	28	1.52
77578--77627	13	3.9	14	72	20	54	74	0	0	26	0.83
77579--77628	25	2.1	22	85	10	64	74	0	0	26	0.83
77567--77647	39	2.2	35	76	19	85	65	1	0	33	1.01
83220--83255	18	2.0	18	88	0	54	38	5	22	33	1.77
83259--83305	17	2.8	17	87	3	60	40	2	8	48	1.45
85727--86035	155	2.0	156	99	0	611	28	17	17	36	1.93
88492--88592	53	1.9	53	87	4	150	42	15	4	36	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93294--93331	20	1.9	20	88	0	58	34	15	7	42	1.76
94011--94083	33	2.2	33	87	4	103	36	6	13	42	1.71
99525--99560	2	18.0	2	94	0	63	47	2	0	50	1.15
103614--103660	2	22.5	2	82	8	58	46	4	0	48	1.21
104310--104366	24	2.3	27	82	11	68	59	0	1	38	1.08
104419--104459	7	5.2	8	85	8	50	39	0	0	60	0.96
105621--105774	75	2.0	77	90	5	242	49	6	17	26	1.71
108123--108155	17	1.9	17	88	11	50	15	6	6	72	1.24
109304--109365	28	2.3	28	75	13	67	51	0	1	46	1.10
109714--109769	29	1.9	29	82	13	71	57	1	0	41	1.09
113891--114126	50	4.7	50	86	2	305	32	21	16	29	1.95
120161--120235	20	3.8	20	80	3	80	40	12	13	34	1.81
120158--120235	40	2.0	39	87	2	111	39	12	12	34	1.82
120771--121006	31	7.4	32	86	7	302	13	19	35	31	1.91

Tables:   1

The End!