genome.fa.s615.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold615
Parameters: 2 7 7 80 10 50 1000
Length:  56758

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5586--5616	13	2.4	13	100	0	62	38	6	16	38	1.74
15776--16428	52	12.4	52	70	13	374	29	26	11	32	1.92
15780--16545	264	2.9	262	93	2	1295	28	26	12	32	1.93
16416--16487	28	2.6	28	86	4	92	20	36	20	22	1.96
16440--16674	79	3.0	79	79	4	267	25	27	14	32	1.95
29054--29127	16	4.7	14	76	18	58	83	10	5	0	0.79
29058--29129	12	5.8	12	76	20	60	83	11	5	0	0.80
29053--29135	19	3.8	20	72	25	62	84	9	6	0	0.78
29056--29105	15	3.4	15	84	15	61	84	12	4	0	0.76
29056--29134	9	8.9	9	71	15	58	83	10	6	0	0.80
30188--30552	55	6.4	55	83	10	448	27	28	20	24	1.99
31375--31446	32	2.2	32	87	0	108	34	11	15	38	1.83
31428--31564	43	3.3	43	64	15	115	32	19	18	29	1.96
31408--31585	82	2.2	82	97	0	338	32	18	16	32	1.94
31471--31521	19	2.6	20	87	9	70	29	15	15	39	1.89
33915--34564	52	12.4	51	69	11	361	29	27	11	32	1.91
34552--34623	28	2.6	28	86	4	92	20	36	20	22	1.96
33918--34676	262	2.9	262	94	0	1320	28	27	12	31	1.92
34576--34810	79	3.0	79	80	4	267	25	27	14	32	1.95
34498--34694	107	1.8	108	82	5	256	25	27	16	30	1.97
41173--41344	51	3.3	51	78	5	191	32	11	26	29	1.91
41327--41402	27	2.8	28	88	6	102	21	21	34	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43869--43894	13	2.0	13	100	0	52	38	15	15	30	1.88
43849--43914	33	2.0	33	87	0	96	42	16	15	25	1.87
43934--44001	19	3.9	18	76	23	83	38	14	11	35	1.83
43956--43980	13	1.9	13	100	0	50	32	16	16	36	1.90
43937--43999	32	2.0	32	96	0	117	36	15	12	34	1.86
44057--44113	21	2.7	21	97	0	105	36	19	10	33	1.86
44117--44164	1	48.0	1	93	0	69	4	2	0	93	0.39
44120--44167	24	2.0	24	100	0	96	8	4	0	87	0.66
44759--45875	55	20.3	55	92	4	1676	21	20	29	28	1.98
46857--46908	1	52.0	1	80	0	59	0	1	7	90	0.53
46858--46909	13	4.0	13	87	5	70	0	1	9	88	0.59
46867--46908	18	2.3	18	95	0	75	0	0	7	92	0.37

Tables:   1

The End!