genome.fa.s618.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold618
Parameters: 2 7 7 80 10 50 1000
Length:  100257

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1946--2102	75	2.1	75	90	2	244	20	11	21	46	1.82
3297--3329	12	2.6	13	95	4	59	0	15	0	84	0.61
3818--3916	28	3.3	31	81	14	93	29	0	5	65	1.13
3863--3916	5	10.4	5	79	15	56	27	0	1	70	0.98
3991--4022	11	2.6	13	85	14	50	62	0	0	37	0.95
5555--5597	19	2.3	19	88	8	61	39	0	0	60	0.97
6296--6337	3	14.0	3	100	0	84	66	0	0	33	0.92
7187--7230	14	3.0	14	83	6	52	54	0	4	40	1.21
8143--8192	19	2.9	17	88	8	66	72	4	0	24	1.02
9464--9497	2	17.5	2	93	6	61	50	0	0	50	1.00
16082--16120	10	4.1	9	81	12	51	64	0	0	35	0.94
16082--16120	19	2.1	19	85	9	53	64	0	0	35	0.94
17211--17256	20	2.2	22	77	14	53	67	0	0	32	0.91
17516--17570	25	2.2	24	81	12	58	38	3	1	56	1.28
17531--17581	25	2.1	23	82	13	59	37	5	3	52	1.44
18502--18534	4	8.2	4	87	12	50	48	0	0	51	1.00
20701--20731	9	3.4	9	95	0	53	45	25	0	29	1.54
20748--20797	24	2.1	24	81	7	57	52	30	10	8	1.64
24917--24963	2	23.5	2	100	0	94	0	48	0	51	1.00
33338--33404	34	2.0	34	93	0	116	22	22	14	40	1.90
33627--33677	2	25.5	2	95	0	93	47	1	50	0	1.12
33876--33983	8	13.8	8	68	24	54	56	0	0	42	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33873--33945	25	2.9	25	76	17	80	61	1	0	36	1.05
33863--33983	30	3.8	31	79	13	131	56	1	0	42	1.09
33939--33995	24	2.3	26	82	11	75	52	1	0	45	1.11
34031--34074	22	2.0	22	100	0	88	22	9	9	59	1.56
41147--41483	97	3.5	97	85	3	389	32	13	26	27	1.94
42677--42728	19	2.7	20	90	6	88	28	11	15	44	1.81
42779--42834	20	2.8	20	89	5	78	28	17	16	37	1.91
45244--45281	13	2.9	13	96	0	67	31	15	18	34	1.92
51379--51417	20	2.0	20	85	5	53	38	10	10	41	1.73
51448--51499	19	2.7	20	90	6	88	28	11	15	44	1.81
54453--54529	30	2.8	28	76	18	72	59	1	0	38	1.06
54825--54864	2	20.0	2	100	0	80	50	0	0	50	1.00
55218--55266	21	2.3	21	83	10	64	48	0	0	51	1.00
58195--58239	16	2.8	17	86	6	58	15	6	4	73	1.21
60717--60762	23	2.0	22	83	4	56	34	0	2	63	1.07
60918--60962	21	2.0	23	87	8	67	55	0	2	42	1.12
60912--61005	17	4.9	17	69	25	62	54	3	2	40	1.28
61152--61202	19	2.8	19	88	5	61	37	3	1	56	1.29
61159--61202	19	2.4	19	92	3	72	38	4	0	56	1.20
61493--61539	13	3.4	13	83	16	67	38	0	0	61	0.96
61484--61539	13	3.9	15	80	17	66	44	0	0	55	0.99
61481--61545	29	2.2	29	88	0	103	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64175--64231	11	5.5	11	76	14	59	66	0	1	31	1.02
64567--64602	16	2.2	16	90	5	54	66	0	0	33	0.92
65060--65129	18	4.0	18	72	22	60	61	0	0	38	0.96
65058--65142	42	2.1	40	85	12	111	61	0	0	38	0.96
65081--65147	21	3.2	20	71	21	57	58	1	0	40	1.07
67531--67584	22	2.5	22	96	3	101	61	9	11	18	1.55
68475--68549	20	3.8	20	80	3	80	40	12	13	34	1.81
68472--68549	40	2.0	39	87	2	111	39	12	12	34	1.82
69106--70119	32	31.7	32	93	0	1600	18	18	33	29	1.95
70102--71141	27	38.0	27	91	2	1614	27	14	34	23	1.94
70102--71141	82	12.7	81	91	2	1614	27	14	34	23	1.94
70102--71141	219	4.8	218	92	2	1658	27	14	34	23	1.94
72155--72187	12	2.8	12	95	0	57	0	0	9	90	0.44
72154--72187	11	3.0	11	87	8	50	0	0	11	88	0.52
72468--72519	23	2.2	24	82	3	61	5	11	11	71	1.31
78632--78685	22	2.5	22	96	3	101	61	9	11	18	1.55
79601--79675	20	3.8	19	80	3	78	40	12	13	34	1.81
80307--80345	2	19.5	2	94	0	69	48	0	51	0	1.00
84241--84266	2	13.0	2	100	0	52	50	0	0	50	1.00
84536--84564	2	14.5	2	100	0	58	0	51	0	48	1.00
88456--88511	22	2.5	23	97	2	105	62	8	10	17	1.52
89426--89496	20	3.6	19	75	7	70	40	12	11	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89419--89496	40	2.0	39	89	2	120	41	12	11	34	1.80
90066--90134	28	2.5	28	92	0	111	24	17	30	27	1.97
90010--90409	32	12.8	32	91	3	543	17	18	34	30	1.94
90392--91568	27	43.0	27	90	3	1847	27	14	34	23	1.93
90392--91568	55	21.5	54	92	2	1847	27	14	34	23	1.93
90392--91568	82	14.3	81	90	3	1847	27	14	34	23	1.93
95670--95694	8	3.1	8	100	0	50	12	88	0	0	0.53
96183--96305	47	2.6	48	74	16	123	67	29	3	0	1.06
96190--96246	25	2.3	24	78	3	69	70	29	0	0	0.88
96190--96305	46	2.5	47	77	16	125	67	30	2	0	1.04
96375--96429	6	9.5	6	78	4	51	69	30	0	0	0.89
96366--96422	22	2.6	22	76	13	64	68	31	0	0	0.90
96510--96551	14	3.0	14	76	13	50	66	30	2	0	1.04
96849--96901	22	2.4	22	78	15	56	56	35	3	3	1.35

Tables:   1

The End!