Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold62
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1452230
ACGTcount: A:0.24, C:0.12, G:0.13, T:0.24
Warning! 388291 characters in sequence are not A, C, G, or T
File 3 of 7
Found at i:665503 original size:13 final size:13
Alignment explanation
Indices: 665485--665509 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
665475 ATCACTTAAA
665485 TGTATCGATACAT
1 TGTATCGATACAT
665498 TGTATCGATACA
1 TGTATCGATACA
665510 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:665574 original size:52 final size:52
Alignment explanation
Indices: 665518--665698 Score: 335
Period size: 52 Copynumber: 3.5 Consensus size: 52
665508 CACTGATCTT
*
665518 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
665570 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
**
665622 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
665674 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
665699 TCATATTTCG
Statistics
Matches: 126, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 126 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:671855 original size:8 final size:8
Alignment explanation
Indices: 671838--671878 Score: 57
Period size: 8 Copynumber: 5.0 Consensus size: 8
671828 TTTTTCTTTA
671838 TTATTTTT
1 TTATTTTT
671846 TTGATTTTT
1 TT-ATTTTT
671855 TTATTTTT
1 TTATTTTT
671863 TTATTTATT
1 TTATTT-TT
671872 TT-TTTTT
1 TTATTTTT
671879 ATAACCTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
7 2 0.06
8 17 0.55
9 12 0.39
ACGTcount: A:0.12, C:0.00, G:0.02, T:0.85
Consensus pattern (8 bp):
TTATTTTT
Found at i:671860 original size:17 final size:17
Alignment explanation
Indices: 671838--671878 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
671828 TTTTTCTTTA
671838 TTATTTTTTTGATTT-TT
1 TTATTTTTTT-ATTTATT
671855 TTATTTTTTTATTTATT
1 TTATTTTTTTATTTATT
671872 TT-TTTTT
1 TTATTTTT
671879 ATAACCTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.12, C:0.00, G:0.02, T:0.85
Consensus pattern (17 bp):
TTATTTTTTTATTTATT
Found at i:672394 original size:44 final size:43
Alignment explanation
Indices: 672241--673164 Score: 218
Period size: 44 Copynumber: 21.0 Consensus size: 43
672231 ATGATAAACA
** * * ** * *
672241 TTTGACCAAAGTGGTAATCATACGTCAAGCAGGAAGAAAAAAGG
1 TTTGACCAGGGTGGTAACCATACGTCAAACAATATGAAAAGA-G
* * * * *
672285 CTTGACCAGGGTGGTAACCACATGTCAAGCAATAATGAAAGGAG
1 TTTGACCAGGGTGGTAACCATACGTCAAACAAT-ATGAAAAGAG
* *
672329 TGTGACCAGGGTGGTATCCATACGTCAAACTAACT-TGAAAAGAG
1 TTTGACCAGGGTGGTAACCATACGTCAAAC-AA-TATGAAAAGAG
* * * * *
672373 TTTGACTAGGGTGGTAACCATACATCATATCGATAT-AATAAGAA
1 TTTGACCAGGGTGGTAACCATACGTCA-AACAATATGAA-AAGAG
* ** * * * *
672417 TCTGACCAGAATGGTAACCATATGTCAGACCAAAATGAGAAACAG
1 TTTGACCAGGGTGGTAACCATACGTCA-AACAATATGA-AAAGAG
* *** * * *
672462 TTTAACCAAAATGGAAATCACACGTCAAACAGGA-ATGAAAAGAG
1 TTTGACCAGGGTGGTAACCATACGTCAAACA--ATATGAAAAGAG
* * * * **
672506 CTTGACCAGGCTGGTAACCACACATCAAGTAGGA-ATG-AAAGAAG
1 TTTGACCAGGGTGGTAACCATACGTCAA--ACAATATGAAAAG-AG
* * * *
672550 TCTGACTAGGGTGGTATCCATACATCAAACAGACT-TGAAAAGAG
1 TTTGACCAGGGTGGTAACCATACGTCAAACA-A-TATGAAAAGAG
* * * * * * *
672594 TTTGACTAGGGTGGTAACCATATGTCAAACAAGAAG-GAGGCGG
1 TTTGACCAGGGTGGTAACCATACGTCAAACAATATGAAAAG-AG
** * * *
672637 ATTTGATTAGGGTGGTAACCATGCATCAAATTAGGA-ATG-AAAGTA-
1 -TTTGACCAGGGTGGTAACCATACGTCAAA-CA--ATATGAAAAG-AG
* * * * * * *
672682 TCTGATCAGGATGGTAACCATACTTCAAACCAAAATGAGATGAG
1 TTTGACCAGGGTGGTAACCATACGTCAAA-CAATATGAAAAGAG
* * * * * * * *
672726 TTTAACTAGGGTGATAACTATACGTTAAACAGAAAAGAGGCAA-A-
1 TTTGACCAGGGTGGTAACCATACGTCAAACA-ATATGA--AAAGAG
* * * * *
672770 TTTGACTAGGGTGGTAACCATGCGTTAAATTAGA-ATGAAAAGAA
1 TTTGACCAGGGTGGTAACCATACGTCAAA-CA-ATATGAAAAGAG
* * * *
672814 TCTGACCAAGGTGGTAACCATATGTCAGACTAATATGAAAAGAG
1 TTTGACCAGGGTGGTAACCATACGTCAAAC-AATATGAAAAGAG
* * * * * * * *
672858 TCTAACCAGGGTCGTAACCATATGTTAAACAAGAAGGAGGCAA-A-
1 TTTGACCAGGGTGGTAACCATACGTCAAACAA-TATGA--AAAGAG
* * ** * *
672902 TTTGACCAGAGTGGTAGCCATGA-GTCAAATTAGAGTGAAAAGAA
1 TTTGACCAGGGTGGTAACCAT-ACGTCAAACAATA-TGAAAAGAG
* * ** * * * * * *
672946 TCTAACCAGGGTGGTAATTATACATTAGATCAAAATGAGAAGAA
1 TTTGACCAGGGTGGTAACCATACGTCA-AACAATATGAAAAGAG
* * *
672990 TTTGACC-GAGGAGGTAACCATACGTC--A-AATAGGAAGGAGGCAG
1 TTTGACCAG-GGTGGTAACCATACGTCAAACAATATGAA--AAG-AG
* * * * *
673033 ATTTGACTAGTGTGATAACCATACGTCAAATCAGA-ATGAAAAAAA
1 -TTTGACCAGGGTGGTAACCATACGTCAAA-CA-ATATGAAAAGAG
* * * * **
673078 TTTGACCAAGGTGGTAGCCATATGTTAGATTGAA-ATGAAAAGAG
1 TTTGACCAGGGTGGTAACCATACGTCA-A-ACAATATGAAAAGAG
* *
673122 TTTGACCAAGGTGGTAACCATACGTCAAACAAGAATGAAAAGA
1 TTTGACCAGGGTGGTAACCATACGTCAAACAA-TATGAAAAGA
673165 AATTAGGTTT
Statistics
Matches: 633, Mismatches: 189, Indels: 116
0.67 0.20 0.12
Matches are distributed among these distances:
40 5 0.01
42 12 0.02
43 27 0.04
44 513 0.81
45 56 0.09
46 13 0.02
47 1 0.00
48 5 0.01
49 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (43 bp):
TTTGACCAGGGTGGTAACCATACGTCAAACAATATGAAAAGAG
Found at i:672658 original size:221 final size:220
Alignment explanation
Indices: 672210--672615 Score: 564
Period size: 221 Copynumber: 1.8 Consensus size: 220
672200 GGTGTCTATA
* * * * * * *
672210 GTAACCATAAGCCAGATCAAAATGATAAACATTTGACCAAAGTGGTAATCATACGTCAAGCAGGA
1 GTAACCATAAGCCAGACCAAAATGAGAAACATTTAACCAAAATGGAAATCACACGTCAAACAGGA
* ** * * *
672275 AGAAAAAAGGCTTGACCAGGGTGGTAACCACATGTCAAGCAATAATGAAAGGAGTGTGACCAGGG
66 AGAAAAAAGGCTTGACCAGGCTGGTAACCACACATCAAGCAAGAATGAAAGAAGTCTGACCAGGG
* *
672340 TGGTATCCATACGTCAAACTAACTTGAAAAGAGTTTGACTAGGGTGGTAACCATACATCATATCG
131 TGGTATCCATACATCAAACTAACTTGAAAAGAGTTTGACTAGGGTGGTAACCATACATCATAACG
* *
672405 ATATAATAAGAATCTGACCAGAATG
196 ATAGAAGAAGAATCTGACCAGAATG
* *
672430 GTAACCATATGTCAGACCAAAATGAGAAACAGTTTAACCAAAATGGAAATCACACGTCAAACAGG
1 GTAACCATAAGCCAGACCAAAATGAGAAACA-TTTAACCAAAATGGAAATCACACGTCAAACAGG
* * * *
672495 AATGAAAAGA-GCTTGACCAGGCTGGTAACCACACATCAAGTAGGAATGAAAGAAGTCTGACTAG
65 AA-GAAAAAAGGCTTGACCAGGCTGGTAACCACACATCAAGCAAGAATGAAAGAAGTCTGACCAG
672559 GGTGGTATCCATACATCAAAC-AGACTTGAAAAGAGTTTGACTAGGGTGGTAACCATA
129 GGTGGTATCCATACATCAAACTA-ACTTGAAAAGAGTTTGACTAGGGTGGTAACCATA
672616 TGTCAAACAA
Statistics
Matches: 163, Mismatches: 20, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
220 28 0.17
221 129 0.79
222 6 0.04
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.20
Consensus pattern (220 bp):
GTAACCATAAGCCAGACCAAAATGAGAAACATTTAACCAAAATGGAAATCACACGTCAAACAGGA
AGAAAAAAGGCTTGACCAGGCTGGTAACCACACATCAAGCAAGAATGAAAGAAGTCTGACCAGGG
TGGTATCCATACATCAAACTAACTTGAAAAGAGTTTGACTAGGGTGGTAACCATACATCATAACG
ATAGAAGAAGAATCTGACCAGAATG
Found at i:672664 original size:132 final size:129
Alignment explanation
Indices: 672507--672962 Score: 409
Period size: 132 Copynumber: 3.5 Consensus size: 129
672497 TGAAAAGAGC
* * ** * *
672507 TTGACCAGGCTGGTAACCACACATCAAGTAGGAATGAAAGAAGTCTGACTAGGGTGGTATCCATA
1 TTGACTAGGGTGGTAACCATGCATCAATTAGGAATGAAAGAA-TCTGACTAGGGTGGTAACCATA
* * **
672572 CATCAAACAGACTTGAAAAGAGTTTGACTAGGGTGGTAACCATATGTCAAACAAGAAGGAGGCGG
65 CATCAAACA-A-TTGAAAAGAGTTTAACTAGGGTGGTAACCATATGTTAAACAAGAAGGAGGCAA
672637 AT
128 AT
* * *
672639 TTGATTAGGGTGGTAACCATGCATCAAATTAGGAATGAAAGTATCTGA-TCAGGATGGTAACCAT
1 TTGACTAGGGTGGTAACCATGCATC-AATTAGGAATGAAAGAATCTGACT-AGGGTGGTAACCAT
* * * * * * * *
672703 ACTTCAAACCAAAATGAGATGAGTTTAACTAGGGTGATAACTATACGTTAAAC-AGAAAAGAGGC
64 ACATCAAA-C-AATTGAAAAGAGTTTAACTAGGGTGGTAACCATATGTTAAACAAG-AAGGAGGC
672767 AAAT
126 AAAT
* * * *
672771 TTGACTAGGGTGGTAACCATGCGTTAAATTA-GAATGAAAAGAATCTGACCAAGGTGGTAACCAT
1 TTGACTAGGGTGGTAACCATGC-ATCAATTAGGAATG-AAAGAATCTGACTAGGGTGGTAACCAT
** * * * *
672835 ATGTCAGACTAATATGAAAAGAGTCTAACCAGGGTCGTAACCATATGTTAAACAAGAAGGAGGCA
64 ACATCAAAC-AAT-TGAAAAGAGTTTAACTAGGGTGGTAACCATATGTTAAACAAGAAGGAGGCA
672900 AAT
127 AAT
* * * * * *
672903 TTGACCAGAGTGGTAGCCATG-AGTCAAATTA-GAGTGAAAAGAATCTAACCAGGGTGGTAA
1 TTGACTAGGGTGGTAACCATGCA-TC-AATTAGGAATG-AAAGAATCTGACTAGGGTGGTAA
672963 TTATACATTA
Statistics
Matches: 262, Mismatches: 50, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
131 12 0.05
132 229 0.87
133 20 0.08
134 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (129 bp):
TTGACTAGGGTGGTAACCATGCATCAATTAGGAATGAAAGAATCTGACTAGGGTGGTAACCATAC
ATCAAACAATTGAAAAGAGTTTAACTAGGGTGGTAACCATATGTTAAACAAGAAGGAGGCAAAT
Found at i:673007 original size:132 final size:130
Alignment explanation
Indices: 672585--673156 Score: 510
Period size: 132 Copynumber: 4.3 Consensus size: 130
672575 CAAACAGACT
* * ** *
672585 TGAAAAGAGTTTGACTAGGGTGGTAACCATATGTCAAACAAGAAGGAGGCGGATTTGATTAGGGT
1 TGAAAAGAGTTTGACCA-GG-GGTAACCATACGTCAAACAAGAAGGAGGCAAATTTGACTAGGGT
* * *
672650 GGTAACCATGCA-TCAAATTAGGAATG-AAAGTATCTGATC-AGGATGGTAACCATAC-TTCAAA
64 GGTAACCATG-AGTCAAATTA-GAATGAAAAGAATCTGACCAAGG-TGGTAACCATACGTT-AGA
*
672711 CCAAAA
125 TCAAAA
* * * * * * *
672717 TGAGATGAGTTTAACTAGGGTGATAACTATACGTTAAAC-AGAAAAGAGGCAAATTTGACTAGGG
1 TGAAAAGAGTTTGACCAGGG-G-TAACCATACGTCAAACAAG-AAGGAGGCAAATTTGACTAGGG
* * * *
672781 TGGTAACCATGCGTTAAATTAGAATGAAAAGAATCTGACCAAGGTGGTAACCATATGTCAGA-CT
63 TGGTAACCATGAGTCAAATTAGAATGAAAAGAATCTGACCAAGGTGGTAACCATACGTTAGATC-
*
672845 AATA
127 AAAA
* * * * * *
672849 TGAAAAGAGTCTAACCAGGGTCGTAACCATATGTTAAACAAGAAGGAGGCAAATTTGACCAGAGT
1 TGAAAAGAGTTTGACCAGGG--GTAACCATACGTCAAACAAGAAGGAGGCAAATTTGACTAGGGT
* * * * ** *
672914 GGTAGCCATGAGTCAAATTAGAGTGAAAAGAATCTAACCAGGGTGGTAATTATACATTAGATCAA
64 GGTAACCATGAGTCAAATTAGAATGAAAAGAATCTGACCAAGGTGGTAACCATACGTTAGATCAA
672979 AA
129 AA
* * * * * *
672981 TGAGAAGAATTTGACCGAGGAGGTAACCATACGTCAAATAGGAAGGAGGCAGATTTGACTAGTGT
1 TGAAAAGAGTTTGACC-AGG-GGTAACCATACGTCAAACAAGAAGGAGGCAAATTTGACTAGGGT
* * * * * * **
673046 GATAACCAT-ACGTCAAATCAGAATGAAAAAAATTTGACCAAGGTGGTAGCCATATGTTAGATTG
64 GGTAACCATGA-GTCAAATTAGAATGAAAAGAATCTGACCAAGGTGGTAACCATACGTTAGATCA
673110 AAA
128 AAA
673113 TGAAAAGAGTTTGACCAAGGTGGTAACCATACGTCAAACAAGAA
1 TGAAAAGAGTTTGACC-AGG-GGTAACCATACGTCAAACAAGAA
673157 TGAAAAGAAA
Statistics
Matches: 354, Mismatches: 72, Indels: 28
0.78 0.16 0.06
Matches are distributed among these distances:
130 1 0.00
131 12 0.03
132 329 0.93
133 11 0.03
134 1 0.00
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.23
Consensus pattern (130 bp):
TGAAAAGAGTTTGACCAGGGGTAACCATACGTCAAACAAGAAGGAGGCAAATTTGACTAGGGTGG
TAACCATGAGTCAAATTAGAATGAAAAGAATCTGACCAAGGTGGTAACCATACGTTAGATCAAAA
Found at i:673140 original size:88 final size:87
Alignment explanation
Indices: 672770--673168 Score: 279
Period size: 88 Copynumber: 4.5 Consensus size: 87
672760 AAGAGGCAAA
* * * * *
672770 TTTGACTAGGGTGGTAACCATGCGTTAAATTAGAATGAAAAGAATCTGACCAAGGTGGTAACCAT
1 TTTGACCAGGGTGGTAACCATACGTTAAATCAGAATGAAAAAAATTTGACCAAGGTGGTAACCAT
* *
672835 ATGTCAGACTAATATGAAAAGAG
66 ATGTCAAATTAA-ATGAAAAGAG
* * * * * *** *
672858 TCTAACCAGGGTCGTAACCATATGTTAAA-CAAGAAGGAGGCAAATTTGACC-AGAGTGGTAGCC
1 TTTGACCAGGGTGGTAACCATACGTTAAATC-AGAATGAAAAAAATTTGACCAAG-GTGGTAACC
* *
672921 ATGA-GTCAAATTAGAGTGAAAAGAA
64 AT-ATGTCAAATTA-AATGAAAAGAG
* * ** * * * * * * *
672946 TCTAACCAGGGTGGTAATTATACATTAGATCAAAATGAGAAGAATTTGACCGAGGAGGTAACCAT
1 TTTGACCAGGGTGGTAACCATACGTTAAATCAGAATGAAAAAAATTTGACCAAGGTGGTAACCAT
* * **
673011 ACGTCAAA-TAGGAAGGAGGCAGA-
66 ATGTCAAATTA--AATGA-AAAGAG
* * * * *
673034 TTTGACTAGTGTGATAACCATACGTCAAATCAGAATGAAAAAAATTTGACCAAGGTGGTAGCCAT
1 TTTGACCAGGGTGGTAACCATACGTTAAATCAGAATGAAAAAAATTTGACCAAGGTGGTAACCAT
* *
673099 ATGTTAGATTGAAATGAAAAGAG
66 ATGTCAAATT-AAATGAAAAGAG
* *
673122 TTTGACCAAGGTGGTAACCATACGTCAAA-CAAGAATGAAAAGAAATT
1 TTTGACCAGGGTGGTAACCATACGTTAAATC-AGAATGAAAA-AAATT
673169 AGGTTTGGCA
Statistics
Matches: 236, Mismatches: 61, Indels: 27
0.73 0.19 0.08
Matches are distributed among these distances:
87 9 0.04
88 212 0.90
89 14 0.06
90 1 0.00
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.23
Consensus pattern (87 bp):
TTTGACCAGGGTGGTAACCATACGTTAAATCAGAATGAAAAAAATTTGACCAAGGTGGTAACCAT
ATGTCAAATTAAATGAAAAGAG
Found at i:674597 original size:88 final size:86
Alignment explanation
Indices: 674473--674694 Score: 257
Period size: 88 Copynumber: 2.5 Consensus size: 86
674463 GATGCACATG
* * * *
674473 AAATGATGTAAATGCAAGCATCAATAAAGTGGCAAATGCATATGAACTGATGCAAATGCCAATGT
1 AAATGATGCAAATGCAAGCATCAATAAA-AGGCAAATGCATATGAA-TAATGCAAATACCAATGT
*
674538 TATCTAAAATGCAAATGT-GCGTA
64 TATCTAAAATGCAAATATAG-GTA
* * *
674561 AAATGATGCAATTGCAAGCATAAATAAAAGGACAAATGCATATGGAATAATGCAAATACTAATGT
1 AAATGATGCAAATGCAAGCATCAATAAAAGG-CAAATGCATAT-GAATAATGCAAATACCAATGT
* * *
674626 TATCTAAAATGTAGATATAGGTG
64 TATCTAAAATGCAAATATAGGTA
** *
674649 AAACAATGCAAATGCAAGCATCAACAATAAGGCAAATGCATATGAA
1 AAATGATGCAAATGCAAGCATCAATAA-AAGGCAAATGCATATGAA
674695 ACGACTCAAA
Statistics
Matches: 114, Mismatches: 16, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
87 5 0.04
88 101 0.89
89 8 0.07
ACGTcount: A:0.46, C:0.13, G:0.18, T:0.23
Consensus pattern (86 bp):
AAATGATGCAAATGCAAGCATCAATAAAAGGCAAATGCATATGAATAATGCAAATACCAATGTTA
TCTAAAATGCAAATATAGGTA
Found at i:679921 original size:154 final size:152
Alignment explanation
Indices: 679693--680087 Score: 406
Period size: 154 Copynumber: 2.6 Consensus size: 152
679683 TATCTCGGTA
* * * * *
679693 ACCTTTAAAGACTT-AAAAAGATTATAGATGAGATGAACCTATCCT-AATACCCATCTTCGACAT
1 ACCTCTAAAGACTTAAAAAAGATTTTAAATGGGATGAACCTATCCTAAATA-CCACCTTCGACAT
* * * *
679756 AAAAGCAAACCCGGTGACAACGTAAGAGTTAGTTTAAAAAATTAC-AAAGGTGCCCCTAAGGGG-
65 AAAAGCGAACCCGGTGACAACCTAAGAGTTAGTTTAAAAAATTACGAAA-AT--ACCTAAGGGGA
* * *
679819 TACCTTC-ATTGTAGAAGTAC-CTGAT
127 TACCTTCGA-TATAAAAGTACTCTAAT
* *
679844 ACCTCTAAAGGACTTAAAAAAGATTTTAAAAGGGATGAACCTATCCTAAATATCCACCTTCGGCA
1 ACCTCTAAA-GACTTAAAAAAGATTTTAAATGGGATGAACCTATCCTAAATA-CCACCTTCGACA
* * * * *
679909 TAAAAGCGAACCCAGTGATAACCTAAGAGTTGGTTTATAAAATTACGAAAATACCTTAGGGGATA
64 TAAAAGCGAACCCGGTGACAACCTAAGAGTTAGTTTAAAAAATTACGAAAATACCTAAGGGGATA
* *
679974 CTTTCGATATAAAAGTACTTTAAT
129 CCTTCGATATAAAAGTACTCTAAT
* * ** *
679998 ACCCCTAAAAGACTTAAAAAAGAGTTTAAATGGGATGAAAATACCCTAAATACCAACCTTCGACA
1 ACCTCT-AAAGACTTAAAAAAGATTTTAAATGGGATGAACCTATCCTAAATACC-ACCTTCGACA
* * *
680063 TAAAAGCGGACTCGGTAACAACCTA
64 TAAAAGCGAACCCGGTGACAACCTA
680088 GGACTTGATT
Statistics
Matches: 201, Mismatches: 34, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
151 8 0.04
152 13 0.06
153 44 0.22
154 130 0.65
155 6 0.03
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.25
Consensus pattern (152 bp):
ACCTCTAAAGACTTAAAAAAGATTTTAAATGGGATGAACCTATCCTAAATACCACCTTCGACATA
AAAGCGAACCCGGTGACAACCTAAGAGTTAGTTTAAAAAATTACGAAAATACCTAAGGGGATACC
TTCGATATAAAAGTACTCTAAT
Found at i:680728 original size:13 final size:13
Alignment explanation
Indices: 680710--680739 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
680700 AAAAAATTGA
680710 TTTATTAATTTAT
1 TTTATTAATTTAT
*
680723 TTTATTATTTTAT
1 TTTATTAATTTAT
680736 TTTA
1 TTTA
680740 CTTTGGTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTATTAATTTAT
Found at i:682650 original size:11 final size:11
Alignment explanation
Indices: 682634--682658 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
682624 ATAAAATTAT
682634 TAAATTTAAAA
1 TAAATTTAAAA
682645 TAAATTTAAAA
1 TAAATTTAAAA
682656 TAA
1 TAA
682659 GTAAAATTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
TAAATTTAAAA
Found at i:686434 original size:23 final size:24
Alignment explanation
Indices: 686395--686444 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
686385 AAAATATTTA
686395 AAAATAGACTAACAT-AATTAAAT
1 AAAATAGACTAACATAAATTAAAT
* *
686418 AAAATAGGCTCAA-ATAAATTAATT
1 AAAATAGACT-AACATAAATTAAAT
686442 AAA
1 AAA
686445 TATGCACATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.60, C:0.08, G:0.06, T:0.26
Consensus pattern (24 bp):
AAAATAGACTAACATAAATTAAAT
Found at i:686552 original size:24 final size:24
Alignment explanation
Indices: 686498--686559 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 24
686488 GGTTTGGCTT
**
686498 TAAATTAAATATTATATGACCCAA
1 TAAATTAAATAAAATATGACCCAA
*
686522 TATAATTAAATAAAATA-GGCCCAAA
1 TA-AATTAAATAAAATATGACCC-AA
*
686547 TAAATTAATTAAA
1 TAAATTAAATAAA
686560 TAAGCACGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 16 0.50
25 16 0.50
ACGTcount: A:0.55, C:0.10, G:0.05, T:0.31
Consensus pattern (24 bp):
TAAATTAAATAAAATATGACCCAA
Found at i:686628 original size:115 final size:115
Alignment explanation
Indices: 686408--686621 Score: 308
Period size: 115 Copynumber: 1.9 Consensus size: 115
686398 ATAGACTAAC
* * * * *
686408 ATAATTAAATAAAATAGGCTCAAATAAATTAATTAAATATGCACATAGGCCTTATTTTGTCTAAC
1 ATAATTAAATAAAATAGGCCCAAATAAATTAATTAAATAAGCACATAGGACTTATTTTATATAAC
**
686473 ATATATTTTATATAAGGTTTGGCTTTAAATTAAATATTATATGACCCAAT
66 ATATATTTTATATAAGACTTGGCTTTAAATTAAATATTATATGACCCAAT
* *
686523 ATAATTAAATAAAATAGGCCCAAATAAATTAATTAAATAAGCACGTAGGAC-TATTTTATATAAT
1 ATAATTAAATAAAATAGGCCCAAATAAATTAATTAAATAAGCACATAGGACTTATTTTATATAAC
*
686587 ATATATTTT-TATAAGACTT-GATCTTAAATTAAATA
66 ATATATTTTATATAAGACTTGGCT-TTAAATTAAATA
686622 ATTTATAACC
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 2 0.02
113 20 0.23
114 19 0.22
115 47 0.53
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.37
Consensus pattern (115 bp):
ATAATTAAATAAAATAGGCCCAAATAAATTAATTAAATAAGCACATAGGACTTATTTTATATAAC
ATATATTTTATATAAGACTTGGCTTTAAATTAAATATTATATGACCCAAT
Found at i:691356 original size:6 final size:6
Alignment explanation
Indices: 691342--691381 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
691332 AGATACGCTA
*
691342 TATTAC TATTGC TATTGC TATTGC TATTGC TATTGC TATT
1 TATTGC TATTGC TATTGC TATTGC TATTGC TATTGC TATT
691382 TGCTTATGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.53
Consensus pattern (6 bp):
TATTGC
Found at i:693284 original size:14 final size:14
Alignment explanation
Indices: 693265--693308 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
693255 TGAGATTATT
*
693265 TTTTTATTTTAATA
1 TTTTTATTTAAATA
*
693279 TTTTTATTTAAATT
1 TTTTTATTTAAATA
693293 TTTTTAATATTAAATA
1 TTTTT-AT-TTAAATA
693309 AATTTTTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 17 0.68
15 2 0.08
16 6 0.24
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
TTTTTATTTAAATA
Found at i:694357 original size:3 final size:3
Alignment explanation
Indices: 694349--694381 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
694339 TGAATTGACA
694349 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
694382 GAAAGAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:696203 original size:155 final size:154
Alignment explanation
Indices: 695951--697604 Score: 1429
Period size: 155 Copynumber: 10.7 Consensus size: 154
695941 CTAAGTTCAA
* * * ** *
695951 AAAAATTATGAAAATGCCCTTAAGGGATACCTTCGACGTAAAAGTA-CCTAATACCCCTAAAGGA
1 AAAAATTACGAAAATGCCCTTAGGGGATACCTTCGACGTGAAAGTATCCTGGTAACCCTAAAGGA
* * *
696015 CCTAAAAAGGA-TAGAAATGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGACC
66 CTTAAAAA-GACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAGACC
* *
696079 TGGCGACAACCTAGGACTCGGTTTT
130 TGGTGACAACCTAGGACTCGGTTCT
* * * *
696104 GAAAAA-AACGAAAATACCCCTAGGGGTATACCTTCGACGTGAAAGTATCCTGGTAACCTTAAAG
1 -AAAAATTACGAAAATGCCCTTAGGGG-ATACCTTCGACGTGAAAGTATCCTGGTAACCCTAAAG
* * * *
696168 GACTTAAAAAGACTAGAGATGGGATGAACCTATCCTAAATGCTCACCTTCGGCATAAAAGC-GAA
64 GACTTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAGAC
* * *
696232 CTCGGTGACAACCTAAGAGTTGGTTCTAT
129 CT-GGTGACAACCTAGGACTCGGTTC--T
* * * *
696261 AAAAATCACG-AAATGCCCTTTGGGGATACCTTCGACGTGAAAGTAT-CTCAGT-ACCTTAAAGG
1 AAAAATTACGAAAATGCCCTTAGGGGATACCTTCGACGTGAAAGTATCCT-GGTAACCCTAAAGG
* * ** * * *
696323 ACTTAAAAAGATTAGAAATGGTGATGAACCTATAATAAATGCCTATCTTCGGCATAAAAGCGGAC
65 ACTTAAAAAGACTAGAAAAGG-GATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAGAC
*
696388 CTGGTGACAACCTAGGACTCAGTTCT
129 CTGGTGACAACCTAGGACTCGGTTCT
* * * * * * * **
696414 GAGAAATTATGAAAATGCCCCTATGGGTATACCTTCGACATAAAAGTATCCCGACAACCCTAAAG
1 -AAAAATTACGAAAATGCCCTTA-GGGGATACCTTCGACGTGAAAGTATCCTGGTAACCCTAAAG
* * * *
696479 GACTTAAAAAGACTAGAAACGGG-TGAACCTATCCTAAATACCCACCTTCGACATAAAAGCGGA-
64 GACTTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAGAC
* * *
696542 CTCGGTGATAACCTAGGACTCGATTTT
129 CT-GGTGACAACCTAGGACTCGGTTCT
* * *** * *
696569 GAAAAA-AATGAAAAATGATTTTAAGGGATACCTTCGACGTGAAAGTAT-CTCGGTACCCCTAAA
1 -AAAAATTACG-AAAATGCCCTTAGGGGATACCTTCGACGTGAAAGTATCCT-GGTAACCCTAAA
** *
696632 GGACTTAAAAAGACTAGAAAAGGG-TGAACCTATCCTAAATATCCACCTTCGACATAAAAGCAGA
63 GGACTTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAGA
* * * *
696696 CCCGGTGATAACCTAAGACTCGATTCT
128 CCTGGTGACAACCTAGGACTCGGTTCT
* * * * * * *
696723 AAAAATTACAAAAATGCCTTTAGAGGATATCTTCGATGTGAAAGTACCCTGGTACCCCTAAAGGA
1 AAAAATTACGAAAATGCCCTTAGGGGATACCTTCGACGTGAAAGTATCCTGGTAACCCTAAAGGA
* * * * * * * * *
696788 TTTAAAAAAGAATATAAAAAGG-TGAACCTATCCTAAGTACCCACTTTCGACATAAAAGCAAACC
66 CTT-AAAAAGACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAGACC
* * * *
696852 CGGTGACAGCCTAGAAACT-GGATCT
130 TGGTGACAACCTAG-GACTCGGTTCT
* * * *
696877 AAAATATTATGAAAATGCCCCTAGAGGATACCTTC-AGCGTGAAAGTAT-CTCGGTACCCCTAAA
1 AAAA-ATTACGAAAATGCCCTTAGGGGATACCTTCGA-CGTGAAAGTATCCT-GGTAACCCTAAA
* * * *
696940 GGACATAAAAAGACTCATAAAAAGGATGAACCTATCCTAAATGCCCACCTTTGGCATAAAAGCAG
63 GGACTTAAAAAGACT-AGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAG
* * *
697005 ACC-AGTGACGACCTAGGACTCAGTTCT
127 ACCTGGTGACAACCTAGGACTCGGTTCT
* * * * * *** *
697032 AAGAAATTACGAAAATACCCTTATAGGTATACCTTCGACGTAAAAGTACCCTAACAACCCTAAAA
1 AA-AAATTACGAAAATGCCCTTA-GGGGATACCTTCGACGTGAAAGTATCCTGGTAACCCTAAAG
* * * * * * *
697097 GAC-TAAAAGGACTAGAAAATGGATGAACTTATCCTAAATGCCCATCTTCAGCATAAAATCAAAC
64 GACTTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAGAC
* *
697161 CCGGTGACAACCTAGAACTCGGTTCT
129 CTGGTGACAACCTAGGACTCGGTTCT
* * * * * * * * *
697187 AGGAAATTATGAAAATGCCCCTATGGGTATACCTTTGACGTAAAAGTACCCCGGCAACCCTAAAG
1 A-AAAATTACGAAAATGCCCTTA-GGGGATACCTTCGACGTGAAAGTATCCTGGTAACCCTAAAG
* * *
697252 GACTTAAAAAGACTAGAAAAGGG-TGAACCTATCCTAAATACCCACCTTCGGTATAAAAAC-GAA
64 GACTTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAG-A
* *
697315 CCTGGTGATAACCTAGGACTCGATTCT
128 CCTGGTGACAACCTAGGACTCGGTTCT
* * *** ** *
697342 AAAAATTATGAAAATGCCCCTATAAGATACCTTCGACGTGAAAGT-TCCCCG-ATACCCTTAAAA
1 AAAAATTACGAAAATGCCCTTAGGGGATACCTTCGACGTGAAAGTATCCTGGTA-ACCC-TAAAG
* * * *
697405 GATTTAAAAAAGACTATAAAAGGG-TGAACCTATCCTAAGTACCCACCTTCGGCATAAAAGCAGA
64 GACTT-AAAAAGACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAGA
** * * *
697469 CCCCGTGAC-ACCTAAGAATTGGTTCT
128 CCTGGTGACAACCTAGGACTCGGTTCT
* ** ** * * * *
697495 AAAAAATTACAAAAATATCCTTAGGGGATACCTAAGATGTG--A--ATCCCGGTATCCTTAAAGG
1 -AAAAATTACGAAAATGCCCTTAGGGGATACCTTCGACGTGAAAGTATCCTGGTAACCCTAAAGG
* * * *
697556 ACTTAAAAGGACTCATAAAAGGGATGAGCCTATCTTAAATGCCCACCTT
65 ACTTAAAAAGACT-AGAAAAGGGATGAACCTATCCTAAATGCCCACCTT
697605 TAAAATTGAA
Statistics
Matches: 1235, Mismatches: 219, Indels: 95
0.80 0.14 0.06
Matches are distributed among these distances:
149 8 0.01
150 17 0.01
151 29 0.02
152 10 0.01
153 107 0.09
154 426 0.34
155 474 0.38
156 128 0.10
157 36 0.03
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.22
Consensus pattern (154 bp):
AAAAATTACGAAAATGCCCTTAGGGGATACCTTCGACGTGAAAGTATCCTGGTAACCCTAAAGGA
CTTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAGACCT
GGTGACAACCTAGGACTCGGTTCT
Found at i:697502 original size:773 final size:773
Alignment explanation
Indices: 696113--697510 Score: 1901
Period size: 773 Copynumber: 1.8 Consensus size: 773
696103 TGAAAAAAAC
* * *
696113 GAAAATACCCCTAGGGGTATACCTTCGACGTGAAAGTATCCTGGTAACCTTAAAGGACTTAAAAA
1 GAAAATACCCCTAGAGGTATACCTTCGACGTGAAAGTATCCTGGTAACCCTAAAGGACATAAAAA
* ** * *
696178 GACTAGAGATGGGATGAACCTATCCTAAATGCTCACCTTCGGCATAAAAGCGAACTCGGTGACAA
66 GACTAGAAAAAGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGAACTCAGTGACAA
* ** * * * *
696243 CCTAAGAGTTGGTTCTATAAAAATCACGAAATGCCCTTTGGGGATACCTTCGACGTGAAAGTATC
131 CCTAAGACTCAGTTCTATAAAAATCACGAAATACCCTTTAGGGATACCTTCGACGTAAAAGTACC
* ** * * * *
696308 TCAGTACCTTAAAGGACTTAAAAAGATTAGAAATGGTGATGAACCTATAATAAATGCCTATCTTC
196 TAACAACCCTAAAAGACTTAAAAAGACTAGAAATGGTGATGAACCTATAATAAATGCCCATCTTC
* ** * *
696373 GGCATAAAAGCGGACCTGGTGACAACCTAGGACTCAGTTCTGAGAAATTATGAAAATGCCCCTAT
261 AGCATAAAAGCAAACCCGGTGACAACCTAGAACTCAGTTCTGAGAAATTATGAAAATGCCCCTAT
* *
696438 GGGTATACCTTCGACATAAAAGTATCCCGACAACCCTAAAGGACTTAAAAAGACTAGAAACGGGT
326 GGGTATACCTTCGACATAAAAGTACCCCGACAACCCTAAAGGACTTAAAAAGACTAGAAAAGGGT
* * *
696503 GAACCTATCCTAAATACCCACCTTCGACATAAAAGCGGACTCGGTGATAACCTAGGACTCGATTT
391 GAACCTATCCTAAATACCCACCTTCGACATAAAAACGAACTCGGTGATAACCTAGGACTCGATTC
* * * * *
696568 TGAAAAAAATGAAAAATGATTTTAAGGGATACCTTCGACGTGAAAGTATCTCGGTACCCCTAAAG
456 TGAAAAAAATGAAAAATGACTATAA-GGATACCTTCGACGTGAAAGTATCCCGATACCCCTAAAA
*
696633 GACTTAAAAAGACTAGAAAAGGGTGAACCTATCCTAAATATCCACCTTCGACATAAAAGCAGACC
520 GACTTAAAAAGACTAGAAAAGGGTGAACCTATCCTAAATACCCACCTTCGACATAAAAGCAGACC
* *
696698 CGGTGATAACCTAAGACTCGATTCTAAAAATTACAAAAATGCCTTTAGAGGATATCTTCGATGTG
585 CCGTGATAACCTAAGAATCGATTCTAAAAATTACAAAAATGCCTTTAGAGGATATCTTCGATGTG
696763 AAAGTACCCTGGTACCCCTAAAGGATTTAAAAAAGAATATAAAAAGGTGAACCTATCCTAAGTAC
650 AAAGTACCCTGGTACCCCTAAAGGATTTAAAAAAGAATATAAAAAGGTGAACCTATCCTAAGTAC
696828 CCACTTTCGACATAAAAGCAAACCCGGTGACAGCCTAGAAACTGGATCTAAAATATTAT
715 CCACTTTCGACATAAAAGCAAACCCGGTGACAGCCTAGAAACTGGATCTAAAATATTAT
* *
696887 GAAAATGCCCCTAGAGG-ATACCTTC-AGCGTGAAAGTAT-CTCGGTACCCCTAAAGGACATAAA
1 GAAAATACCCCTAGAGGTATACCTTCGA-CGTGAAAGTATCCT-GGTAACCCTAAAGGACATAAA
* *
696949 AAGACTCATAAAAAGGATGAACCTATCCTAAATGCCCACCTTTGGCATAAAAGC-AGAC-CAGTG
64 AAGACT-AGAAAAAGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGA-ACTCAGTG
* * * * *
697012 ACGACCTAGGACTCAGTTCTA-AGAAATTACGAAAATACCCTTATAGGTATACCTTCGACGTAAA
127 ACAACCTAAGACTCAGTTCTATAAAAATCACG-AAATACCCTT-TAGGGATACCTTCGACGTAAA
* * **
697076 AGTACCCTAACAACCCTAAAAGAC-TAAAAGGACTAGAAAAT-G-GATGAACTTATCCTAAATGC
190 AGTA-CCTAACAACCCTAAAAGACTTAAAAAGACTAG-AAATGGTGATGAACCTATAATAAATGC
* *
697138 CCATCTTCAGCATAAAATCAAACCCGGTGACAACCTAGAACTCGGTTCT-AGGAAATTATGAAAA
253 CCATCTTCAGCATAAAAGCAAACCCGGTGACAACCTAGAACTCAGTTCTGA-GAAATTATGAAAA
* * *
697202 TGCCCCTATGGGTATACCTTTGACGTAAAAGTACCCCGGCAACCCTAAAGGACTTAAAAAGACTA
317 TGCCCCTATGGGTATACCTTCGACATAAAAGTACCCCGACAACCCTAAAGGACTTAAAAAGACTA
**
697267 GAAAAGGGTGAACCTATCCTAAATACCCACCTTCGGTATAAAAACGAAC-CTGGTGATAACCTAG
382 GAAAAGGGTGAACCTATCCTAAATACCCACCTTCGACATAAAAACGAACTC-GGTGATAACCTAG
* *
697331 GACTCGATTCT-AAAAATTATG-AAAATGCCCCTATAA-GATACCTTCGACGTGAAAGT-TCCCC
446 GACTCGATTCTGAAAAA-AATGAAAAATG--ACTATAAGGATACCTTCGACGTGAAAGTAT-CCC
* * * * *
697392 GATACCCTTAAAAGATTTAAAAAAGACTATAAAAGGGTGAACCTATCCTAAGTACCCACCTTCGG
507 GATACCCCTAAAAGACTT-AAAAAGACTAGAAAAGGGTGAACCTATCCTAAATACCCACCTTCGA
* * *
697457 CATAAAAGCAGACCCCGTGA-CACCTAAGAATTGGTTCTAAAAAATTACAAAAAT
571 CATAAAAGCAGACCCCGTGATAACCTAAGAATCGATTCT-AAAAATTACAAAAAT
697511 ATCCTTAGGG
Statistics
Matches: 538, Mismatches: 70, Indels: 33
0.84 0.11 0.05
Matches are distributed among these distances:
771 1 0.00
772 74 0.14
773 351 0.65
774 95 0.18
775 17 0.03
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.23
Consensus pattern (773 bp):
GAAAATACCCCTAGAGGTATACCTTCGACGTGAAAGTATCCTGGTAACCCTAAAGGACATAAAAA
GACTAGAAAAAGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGAACTCAGTGACAA
CCTAAGACTCAGTTCTATAAAAATCACGAAATACCCTTTAGGGATACCTTCGACGTAAAAGTACC
TAACAACCCTAAAAGACTTAAAAAGACTAGAAATGGTGATGAACCTATAATAAATGCCCATCTTC
AGCATAAAAGCAAACCCGGTGACAACCTAGAACTCAGTTCTGAGAAATTATGAAAATGCCCCTAT
GGGTATACCTTCGACATAAAAGTACCCCGACAACCCTAAAGGACTTAAAAAGACTAGAAAAGGGT
GAACCTATCCTAAATACCCACCTTCGACATAAAAACGAACTCGGTGATAACCTAGGACTCGATTC
TGAAAAAAATGAAAAATGACTATAAGGATACCTTCGACGTGAAAGTATCCCGATACCCCTAAAAG
ACTTAAAAAGACTAGAAAAGGGTGAACCTATCCTAAATACCCACCTTCGACATAAAAGCAGACCC
CGTGATAACCTAAGAATCGATTCTAAAAATTACAAAAATGCCTTTAGAGGATATCTTCGATGTGA
AAGTACCCTGGTACCCCTAAAGGATTTAAAAAAGAATATAAAAAGGTGAACCTATCCTAAGTACC
CACTTTCGACATAAAAGCAAACCCGGTGACAGCCTAGAAACTGGATCTAAAATATTAT
Found at i:698256 original size:20 final size:20
Alignment explanation
Indices: 698231--698284 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
698221 GTTATAAGTA
*
698231 ATGTATTGATACAAT-TCAT
1 ATGTATCGATACAATGTCAT
*
698250 CATGTATCGATACAATGTCCT
1 -ATGTATCGATACAATGTCAT
698271 ATGTATCGATACAA
1 ATGTATCGATACAA
698285 ACAATGGTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 28 0.90
21 3 0.10
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACAATGTCAT
Found at i:698337 original size:13 final size:13
Alignment explanation
Indices: 698315--698389 Score: 87
Period size: 13 Copynumber: 5.8 Consensus size: 13
698305 GCCAGTTTCA
698315 TGTATCGATATAT
1 TGTATCGATATAT
*
698328 TGTATTGATATAT
1 TGTATCGATATAT
** *
698341 TGTATCGATGCAA
1 TGTATCGATATAT
698354 TGTATCGATATAT
1 TGTATCGATATAT
** *
698367 TGTATCGATGCAA
1 TGTATCGATATAT
698380 TGTATCGATA
1 TGTATCGATA
698390 CAAAGCATAA
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (13 bp):
TGTATCGATATAT
Found at i:698345 original size:26 final size:26
Alignment explanation
Indices: 698315--698389 Score: 105
Period size: 26 Copynumber: 2.9 Consensus size: 26
698305 GCCAGTTTCA
* * *
698315 TGTATCGATATATTGTATTGATATAT
1 TGTATCGATACAATGTATCGATATAT
*
698341 TGTATCGATGCAATGTATCGATATAT
1 TGTATCGATACAATGTATCGATATAT
*
698367 TGTATCGATGCAATGTATCGATA
1 TGTATCGATACAATGTATCGATA
698390 CAAAGCATAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (26 bp):
TGTATCGATACAATGTATCGATATAT
Found at i:698384 original size:39 final size:39
Alignment explanation
Indices: 698314--698388 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
698304 TGCCAGTTTC
* * *
698314 ATGTATCGATATATTGTATTGATATATTGTATCGATGCA
1 ATGTATCGATATATTGTATCGATACAATGTATCGATGCA
*
698353 ATGTATCGATATATTGTATCGATGCAATGTATCGAT
1 ATGTATCGATATATTGTATCGATACAATGTATCGAT
698389 ACAAAGCATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (39 bp):
ATGTATCGATATATTGTATCGATACAATGTATCGATGCA
Found at i:699010 original size:22 final size:22
Alignment explanation
Indices: 698985--699026 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
698975 AGATAAACAT
698985 ATTTCTCCACCTTTATCAAAGC
1 ATTTCTCCACCTTTATCAAAGC
* *
699007 ATTTCTCCCCCTTTGTCAAA
1 ATTTCTCCACCTTTATCAAA
699027 TCAAAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.24, C:0.33, G:0.05, T:0.38
Consensus pattern (22 bp):
ATTTCTCCACCTTTATCAAAGC
Found at i:700931 original size:40 final size:40
Alignment explanation
Indices: 700886--701256 Score: 167
Period size: 40 Copynumber: 9.2 Consensus size: 40
700876 AAATAGAATC
* *
700886 GATAAAGTCAACCAATTAAAAGGTTGGCCAAGGCAAAACC
1 GATAAAGCCAACCAATTAAAAGGTTGGCCAAGGCAAAACT
* * * **
700926 GATAAAGCCAA-CAGGTTGGAAGGGTT--AAATAGGACAAAACT
1 GATAAAGCCAACCA-ATT-AAAAGGTTGGCCA-AGG-CAAAACT
** * * *
700967 GATAAAATCAACCAATTAAAAGGTTGGCTAGGGCGAAACT
1 GATAAAGCCAACCAATTAAAAGGTTGGCCAAGGCAAAACT
**** * * * * *
701007 GATAAAGCCAATGGGTTGAAGGGTTGACCAGGGCAAAAAT
1 GATAAAGCCAACCAATTAAAAGGTTGGCCAAGGCAAAACT
** * *
701047 GATAAAGTTAACCAATTAAAAGGTTGG-CAAGGGAAAAAT
1 GATAAAGCCAACCAATTAAAAGGTTGGCCAAGGCAAAACT
** ** * *
701086 CGATAAAGCCAAAGAGA-TAGAAAGGTTTACCATGTCAAAACT
1 -GATAAAGCCAACCA-ATTA-AAAGGTTGGCCAAGGCAAAACT
* * * * *
701128 GATGAAGTCAACCAATTAAAAGGTTAGCCAGGGCAAAATT
1 GATAAAGCCAACCAATTAAAAGGTTGGCCAAGGCAAAACT
* * * ** * **
701168 GATAAAGCCAACGAGTTAGAAGGGTTGGGGAGGGTGAAACT
1 GATAAAGCCAACCAATTA-AAAGGTTGGCCAAGGCAAAACT
* * * * * * * *
701209 AATAAAGTCAACTAGTTAAAAGGTTGGCTAGGGTACAACT
1 GATAAAGCCAACCAATTAAAAGGTTGGCCAAGGCAAAACT
701249 GATAAAGC
1 GATAAAGC
701257 GTTCGCTAAG
Statistics
Matches: 239, Mismatches: 79, Indels: 26
0.69 0.23 0.08
Matches are distributed among these distances:
39 13 0.05
40 140 0.59
41 75 0.31
42 11 0.05
ACGTcount: A:0.42, C:0.13, G:0.25, T:0.19
Consensus pattern (40 bp):
GATAAAGCCAACCAATTAAAAGGTTGGCCAAGGCAAAACT
Found at i:701024 original size:81 final size:81
Alignment explanation
Indices: 700886--701256 Score: 379
Period size: 81 Copynumber: 4.6 Consensus size: 81
700876 AAATAGAATC
* * *
700886 GATAAAGTCAACCAATTAAAAGGTTGGCCAAGGCAAAACCGATAAAGCCAAC-AGGTTGGAAGGG
1 GATAAAGTCAACCAATTAAAAGGTTGGCCAGGGCAAAACTGATAAAGCCAACGA-GTTAGAAGGG
* ** *
700950 TTAAATAGGACAAAACT
65 TTGACCAGGGCAAAACT
* * * * *
700967 GATAAAATCAACCAATTAAAAGGTTGGCTAGGGCGAAACTGATAAAGCCAATGGGTT-GAAGGGT
1 GATAAAGTCAACCAATTAAAAGGTTGGCCAGGGCAAAACTGATAAAGCCAACGAGTTAGAAGGGT
*
701031 TGACCAGGGCAAAAAT
66 TGACCAGGGCAAAACT
* * * * * *
701047 GATAAAGTTAACCAATTAAAAGGTTGGCAAGGG-AAAAATCGATAAAGCCAAAGAGATAGAAAGG
1 GATAAAGTCAACCAATTAAAAGGTTGGCCAGGGCAAAACT-GATAAAGCCAACGAGTTAGAAGGG
* * *
701111 TTTACCATGTCAAAACT
65 TTGACCAGGGCAAAACT
* * *
701128 GATGAAGTCAACCAATTAAAAGGTTAGCCAGGGCAAAATTGATAAAGCCAACGAGTTAGAAGGGT
1 GATAAAGTCAACCAATTAAAAGGTTGGCCAGGGCAAAACTGATAAAGCCAACGAGTTAGAAGGGT
*** **
701193 TGGGGAGGGTGAAACT
66 TGACCAGGGCAAAACT
* * * * * *
701209 AATAAAGTCAACTAGTTAAAAGGTTGGCTAGGGTACAACTGATAAAGC
1 GATAAAGTCAACCAATTAAAAGGTTGGCCAGGGCAAAACTGATAAAGC
701257 GTTCGCTAAG
Statistics
Matches: 236, Mismatches: 50, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
79 4 0.02
80 62 0.26
81 165 0.70
82 5 0.02
ACGTcount: A:0.42, C:0.13, G:0.25, T:0.19
Consensus pattern (81 bp):
GATAAAGTCAACCAATTAAAAGGTTGGCCAGGGCAAAACTGATAAAGCCAACGAGTTAGAAGGGT
TGACCAGGGCAAAACT
Found at i:701151 original size:161 final size:162
Alignment explanation
Indices: 700886--703078 Score: 434
Period size: 162 Copynumber: 13.7 Consensus size: 162
700876 AAATAGAATC
* * * *
700886 GATAAAGTCAACCAATTAAAAGGTTGGCCAAGGCAAAACCGATAAAGCCAACAGGTTGGAAGGGT
1 GATAAAGTCAACCAATTAAAAGGTTGGCCAAGGAAAAACCGATAAAGCCAACAGGATAGAAAGGT
* * * *
700951 TAAATAGGACAAAACTGATAAAATCAACCAATTAAAAGGTTGGCTAGGGCGAAACTGATAAAGCC
66 TAAACAGGACAAAACTGATAAAATCAACCAATTAAAAGGTTAGCCAGGGCAAAACTGATAAAGCC
* *
701016 AATGGGTT-GAAGGGTTGACCAGGGCAAAAAT
131 AACGAGTTAGAAGGGTTGACCAGGGCAAAAAT
* *
701047 GATAAAGTTAACCAATTAAAAGGTTGG-CAAGGGAAAAATCGATAAAGCCAA-AGAGATAGAAAG
1 GATAAAGTCAACCAATTAAAAGGTTGGCCAA-GGAAAAACCGATAAAGCCAACAG-GATAGAAAG
* * * * * * *
701110 GTTTACCATGTCAAAACTGATGAAGTCAACCAATTAAAAGGTTAGCCAGGGCAAAATTGATAAAG
64 GTTAAACAGGACAAAACTGATAAAATCAACCAATTAAAAGGTTAGCCAGGGCAAAACTGATAAAG
*** ** *
701175 CCAACGAGTTAGAAGGGTTGGGGAGGGTGAAACT
129 CCAACGAGTTAGAAGGGTTGACCAGGGCAAAAAT
* * * * * * * * ** *
701209 AATAAAGTCAACTAGTTAAAAGGTTGGCTAGGGTACAACTGATAAAG----C--G-T----TCGC
1 GATAAAGTCAACCAATTAAAAGGTTGGCCAAGGAAAAACCGATAAAGCCAACAGGATAGAAAGGT
* * ** * * * * **
701263 T--A-AGG-CAAAATTAACGAAGTCAACTAATTAAAAGGTTGGCCAAGGCAAAACCAATAAAGCC
66 TAAACAGGACAAAACTGATAAAATCAACCAATTAAAAGGTTAGCCAGGGCAAAACTGATAAAGCC
* * ** **
701324 AA-TAGGCTAGAAGGGTTGATTAGGGCAAAACC
131 AACGA-GTTAGAAGGGTTGACCAGGGCAAAAAT
* * * * ** *** * *
701356 GATAAAGTCATCTAATTAAAAGGTTGTCCAAAGTGAAATTAATAAAGCCAACGGGTTAG-AAGGT
1 GATAAAGTCAACCAATTAAAAGGTTGGCCAAGGAAAAACCGATAAAGCCAACAGGATAGAAAGG-
* * * * * * * * * * *
701420 TTGACCAGGGCGAAACCGATAAAGTCAACC-ATATAAAAGGTTGGCCAAGTCGAAACCGATAAAG
65 TTAAACAGGACAAAACTGATAAAATCAACCAAT-TAAAAGGTTAGCCAGGGCAAAACTGATAAAG
* * * * * * * **
701484 TCAACCA-TATA-AAAGGTTGGCCAAGTCGAAACC
129 CCAACGAGT-TAGAAGGGTTGACCAGGGCAAAAAT
* * ** * *
701517 GATAAAGTCAA-CAAGTTAAAAGGGTTGACCAGGGTCAAACCTATAAAGACAACCA--ATTA-AA
1 GATAAAGTCAACCAA-TTAAAA-GGTTGGCCAAGGAAAAACCGATAAAGCCAA-CAGGA-TAGAA
*** ** * ** *** * * *
701578 AGGTTGGCCAAGGTGAAATC-GATAAAGCCAACGGGTTAGAAGGGTT-GACCAAGGCGAAACTGA
62 AGGTTAAAC-AGGACAAAACTGATAAAATCAACCAATTA-AAAGGTTAG-CCAGGGCAAAACTGA
** * * * * * *
701641 TAAAGTTAACTAGTTA-AAAGGTTGGCTAGGGCGAAACT
124 TAAAGCCAACGAGTTAGAAGGGTTGACCAGGGCAAAAAT
* **** * * ** * ** *
701679 AATAAAG-CTAATGGGTTAAAAGGGTTGACCAGGGTGAAACCAATAAAGTTAACA-AATTA-AAA
1 GATAAAGTC-AACCAATTAAAA-GGTTGGCCAAGGAAAAACCGATAAAGCCAACAGGA-TAGAAA
** * * **** * * ** *
701741 GGTT-GGCTAGGGCAAAACTGAT-AAAGCTAATGGGTTAGAAGGGTT-GACCAGTGTGAAATTGA
63 GGTTAAAC-AGGACAAAACTGATAAAATC-AACCAATTA-AAAGGTTAG-CCAGGGCAAAACTGA
* * * * ** * *
701803 TTAAGTCAACCAATTA-AATAGTTCGCCCAGGTG--AAACT
124 TAAAGCCAACGAGTTAGAAGGGTT-GACCAGG-GCAAAAAT
* * * * * * * * *** * *
701841 AATAAAG-CTAA-TAGGTTAGAAAGGTTGACTAGGGCAAAATCGATAAAAATAACAGGTTAGAAG
1 GATAAAGTC-AACCA-ATTA-AAAGGTTGGCCAAGGAAAAACCGATAAAGCCAACAGGATAGAAA
*** * * * **
701904 GGTT-AACTAGGGTGAAACCGATAAAGTCAACCAATTAAAAGGTTGGCCAGGG-AGAAACCAATA
63 GGTTAAAC-AGGACAAAACTGATAAAATCAACCAATTAAAAGGTTAGCCAGGGCA-AAACTGATA
* * * * * *
701967 AAGCAAAAGGGTTAAAAGGGTTGACTA---AAATGAAAT
126 AAGCCAACGAGTTAGAAGGGTTGACCAGGGCAA--AAAT
* * ** ** ** * *
702003 CGATAAAGTCAACCAATTAAAAGGTTGGCTAGGGTGAAATAGATAAAGACCATGA-GTTAGAAGG
1 -GATAAAGTCAACCAATTAAAAGGTTGGCCAAGGAAAAACCGATAAAG-CCAACAGGATAGAAAG
* * * * * * ** **
702067 GTT-AACTAGGGCGAAACTGATAAAGTCAACTAATTAAAAGGTTGGCTAGGGTGAAACCAATAAA
64 GTTAAAC-AGGACAAAACTGATAAAATCAACCAATTAAAAGGTTAGCCAGGGCAAAACTGATAAA
* * * * * * **
702131 GCTAATGTGTTAGAAGGGCTGAGCAAGGCAAAACC
128 GCCAACGAGTTAGAAGGGTTGACCAGGGCAAAAAT
* ** * * * *
702166 GATAAAGTCAACCAATTAAAAGGTTGG-CTAGGGCAAATCGATAAAGCTAGCAGGTTAG-AAGGT
1 GATAAAGTCAACCAATTAAAAGGTTGGCCAAGGAAAAACCGATAAAGCCAACAGGATAGAAAGG-
* * * * * * ** *
702229 TTGACCAAGG-CAAAA-TCCATAAAGTCAACC-ATATAAAAGGTTGGCCAAGGTGAAACCGATAA
65 TTAAAC-AGGACAAAACT-GATAAAATCAACCAAT-TAAAAGGTTAGCCAGGGCAAAACTGATAA
* * * ** *
702291 AGACAACGGGTTAAAAGGGTTGAGTAGGGCAAAACT
127 AGCCAACGAGTTAGAAGGGTTGACCAGGGCAAAAAT
* * * ** * *
702327 AATAAAGGCAACCAATTAAAAGGTTGGCCAGAGCG--AAACTGATAAAGCCAATGGGTTAGAAGG
1 GATAAAGTCAACCAATTAAAAGGTTGGCCA-AG-GAAAAACCGATAAAGCCAACAGGATAGAAAG
* ** ** * * * * * * * ** *
702390 GTT-AACTGGGGAGAAACCAATAAAGTCAACTAGTTCAAAGGATGGCTAGGGTGAAACCGATAAA
64 GTTAAACAGGACA-AAACTGATAAAATCAACCAATTAAAAGGTTAGCCAGGGCAAAACTGATAAA
* * * * **
702454 GCCAATGGGTTAGAAGGGTTGACTAAGGCAAAACC
128 GCCAACGAGTTAGAAGGGTTGACCAGGGCAAAAAT
* * * * * * * * ** * *
702489 GATGAAGTTAACAAATTAAAAGGTTGGCTAGGGCAAAATCGATAAAGCTAACTTGTTAGAAGGGT
1 GATAAAGTCAACCAATTAAAAGGTTGGCCAAGGAAAAACCGATAAAGCCAACAGGATAGAAAGGT
* ** * * * * * * *
702554 T-AACTA-GTCTAAAACCAATTAAATCAACTAATTAAATGGTTGGCCAAGGCGAAACTAATAAAG
66 TAAAC-AGGAC-AAAACTGATAAAATCAACCAATTAAAAGGTTAGCCAGGGCAAAACTGATAAAG
* * ** **
702617 CCAACGGGTTAAAAGGGTTGACCAAAG-TGAAAT
129 CCAACGAGTTAGAAGGGTTGACCAGGGCAAAAAT
* * * ** * * * * *
702650 CGATAAAGTCAACCAATTAAAGGGTTGGCTAGGGTGAAACTGATAAAGACAACAAGTTAGAAGGG
1 -GATAAAGTCAACCAATTAAAAGGTTGGCCAAGGAAAAACCGATAAAGCCAACAGGATAGAAAGG
* * ** * * * * * ** * *
702715 CT-AACTAGGGCAAAACCAATAAAGTCAACTAGTTAAAAGGTTGGCTAGGGTGAAGCTAATAAAG
65 TTAAAC-AGGACAAAACTGATAAAATCAACCAATTAAAAGGTTAGCCAGGGCAAAACTGATAAAG
* *
702779 CCAATGTA-TTAGAAGGGTTGACCAAGGC-AAAAT
129 CCAACG-AGTTAGAAGGGTTGACCAGGGCAAAAAT
* * * * *
702812 CGATAAAGTCAACCAATTAAAAGGTTAGCCAGGGCAAAACCGATAAAACCAACAGGTTAG-AAGG
1 -GATAAAGTCAACCAATTAAAAGGTTGGCCAAGGAAAAACCGATAAAGCCAACAGGATAGAAAGG
* * * * * * * * ** *
702876 TTGACCAAGA-AGAAACTGGTAAAGTCAACCAATTAAAAGCTTGGCCAGGGAAAAACCAATGAAG
65 TTAAACAGGACA-AAACTGATAAAATCAACCAATTAAAAGGTTAGCCAGGGCAAAACTGATAAAG
* * * ** *
702940 CCAATGGGTTAAAAGGGTTGACCATAGC-GAAAT
129 CCAACGAGTTAGAAGGGTTGACCAGGGCAAAAAT
* * * * ** * * * *
702973 CGATAAAGTCAACCAATTAAAGGGTTGGCTAGGGTAAAACTAATAAAGACAACAAGTTAAAAAGG
1 -GATAAAGTCAACCAATTAAAAGGTTGGCCAAGGAAAAACCGATAAAGCCAACAGGATAGAAAGG
* * * *
703038 -TGAACTAGGGCAAAATTGATAAAGT-AACCAATTAAAAGGTT
65 TTAAAC-AGGACAAAACTGATAAAATCAACCAATTAAAAGGTT
703079 GGCTAGGGTG
Statistics
Matches: 1564, Mismatches: 380, Indels: 176
0.74 0.18 0.08
Matches are distributed among these distances:
146 1 0.00
147 105 0.07
148 2 0.00
151 3 0.00
153 1 0.00
154 1 0.00
155 1 0.00
156 1 0.00
157 1 0.00
158 1 0.00
160 21 0.01
161 443 0.28
162 907 0.58
163 67 0.04
164 7 0.00
165 2 0.00
ACGTcount: A:0.42, C:0.14, G:0.25, T:0.20
Consensus pattern (162 bp):
GATAAAGTCAACCAATTAAAAGGTTGGCCAAGGAAAAACCGATAAAGCCAACAGGATAGAAAGGT
TAAACAGGACAAAACTGATAAAATCAACCAATTAAAAGGTTAGCCAGGGCAAAACTGATAAAGCC
AACGAGTTAGAAGGGTTGACCAGGGCAAAAAT
Found at i:701482 original size:81 final size:79
Alignment explanation
Indices: 701279--703081 Score: 568
Period size: 81 Copynumber: 22.3 Consensus size: 79
701269 AAAATTAACG
* * * * * *
701279 AAGTCAACTAATTAAAAGGTTGGCCAAGGCAAAACCAATAAAGCCAATAGGCTAGAAGGGTTGAT
1 AAGTCAACCAATTAAAAGGTTGGCCAAGTCGAAACCAATAAAGCCAA-CGGTTAGAA-GGTTGAC
* *
701344 TAGGGCAAAACCGATA
64 CAGGGCGAAACCGATA
* * * **
701360 AAGTCATCTAATTAAAAGGTTGTCCAAAGT-GAAATTAATAAAGCCAACGGGTTAGAAGGTTTGA
1 AAGTCAACCAATTAAAAGGTTGGCC-AAGTCGAAACCAATAAAGCCAAC-GGTTAGAAGG-TTGA
701424 CCAGGGCGAAACCGATA
63 CCAGGGCGAAACCGATA
* * ** * *
701441 AAGTCAACC-ATATAAAAGGTTGGCCAAGTCGAAACCGATAAAGTCAACCATATAAAAGGTTGGC
1 AAGTCAACCAAT-TAAAAGGTTGGCCAAGTCGAAACCAATAAAGCCAACGGT-TAGAAGGTTGAC
* *
701505 CAAGTCGAAACCGATA
64 CAGGGCGAAACCGATA
* * * * ** *
701521 AAGTCAA-CAAGTTAAAAGGGTTGACCAGGGTC-AAACCTATAAAGACAACCAATTAAAAGGTTG
1 AAGTCAACCAA-TTAAAA-GGTTGGCCA-AGTCGAAACCAATAAAGCCAA-CGGTTAGAAGGTTG
* * * *
701584 GCCAAGGTGAAATCGATA
62 ACCAGGGCGAAACCGATA
* *** * * * ** ** * * *
701602 AAGCCAACGGGTTAGAAGGGTTGACCAAGGCGAAACTGATAAAGTTAACTAGTTAAAAGGTTGGC
1 AAGTCAACCAATTA-AAAGGTTGGCCAAGTCGAAACCAATAAAGCCAAC-GGTTAGAAGGTTGAC
* **
701667 TAGGGCGAAACTAATA
64 CAGGGCGAAACCGATA
**** * * ** ** *
701683 AAG-CTAATGGGTTAAAAGGGTTGACCAGGGT-GAAACCAATAAAGTTAACAAATTAAAAGGTTG
1 AAGTC-AACCAATTAAAA-GGTTGGCCA-AGTCGAAACCAATAAAGCCAAC-GGTTAGAAGGTTG
* * * *
701746 GCTAGGGCAAAACTGATA
62 ACCAGGGCGAAACCGATA
**** * * * *** * * ** *
701764 AAG-CTAATGGGTTAGAAGGGTTGACC-AGTGTGAAATTGATTAAGTCAACCAATTA-AATAGTT
1 AAGTC-AACCAATTA-AAAGGTTGGCCAAGT-CGAAACCAATAAAGCCAA-CGGTTAGAA-GGTT
* * **
701826 CGCCCA-GGTGAAACTAATA
61 -GACCAGGGCGAAACCGATA
* * * * * * * * * ***
701845 AAG-CTAA-TAGGTTAGAAAGGTTGACTAGGGCAAAATCGATAAAAATAACAGGTTAGAAGGGTT
1 AAGTC-AACCA-ATTA-AAAGGTTGGCCAAGTCGAAACCAATAAAGCCAAC-GGTTAGAA-GGTT
* * *
701908 AACTAGGGTGAAACCGATA
61 GACCAGGGCGAAACCGATA
* ** * * *
701927 AAGTCAACCAATTAAAAGGTTGGCCAGGGAGAAACCAATAAAGCAAAAGGGTTAAAAGGGTTGAC
1 AAGTCAACCAATTAAAAGGTTGGCCAAGTCGAAACCAATAAAGC-CAACGGTTAGAA-GGTTGAC
* **** *
701992 TAAAATGAAATCGATA
64 CAGGGCGAAACCGATA
* * * *
702008 AAGTCAACCAATTAAAAGGTTGGCTAGGGT-GAAA-TAGATAAAGACC-ATGAGTTAGAAGGGTT
1 AAGTCAACCAATTAAAAGGTTGGCCA-AGTCGAAACCA-ATAAAG-CCAACG-GTTAGAA-GGTT
* * *
702070 AACTAGGGCGAAACTGATA
61 GACCAGGGCGAAACCGATA
* * * * * *
702089 AAGTCAACTAATTAAAAGGTTGGCTAGGGT-GAAACCAATAAAGCTAATGTGTTAGAAGGGCTGA
1 AAGTCAACCAATTAAAAGGTTGGCCA-AGTCGAAACCAATAAAGCCAACG-GTTAGAA-GGTTGA
* * *
702153 GCAAGGCAAAACCGATA
63 CCAGGGCGAAACCGATA
* * * * * * *
702170 AAGTCAACCAATTAAAAGGTTGGCTAGGGC-AAATCGATAAAGCTAGCAGGTTAGAAGGTTTGAC
1 AAGTCAACCAATTAAAAGGTTGGCCAAGTCGAAACCAATAAAGCCAAC-GGTTAGAAGG-TTGAC
* *
702234 CAAGGCAAAATCC-ATA
64 CAGGGCGAAA-CCGATA
* * *
702250 AAGTCAACC-ATATAAAAGGTTGGCCAAGGT-GAAACCGATAAAGACAACGGGTTAAAAGGGTTG
1 AAGTCAACCAAT-TAAAAGGTTGGCCAA-GTCGAAACCAATAAAGCCAAC-GGTTAGAA-GGTTG
** * **
702313 AGTAGGGCAAAACTAATA
62 ACCAGGGCGAAACCGATA
* ** * *
702331 AAGGCAACCAATTAAAAGGTTGGCCAGAG-CGAAACTGATAAAGCCAATGGGTTAGAAGGGTTAA
1 AAGTCAACCAATTAAAAGGTTGGCCA-AGTCGAAACCAATAAAGCCAA-CGGTTAGAA-GGTTGA
** * *
702395 CTGGGGAGAAACCAATA
63 CCAGGGCGAAACCGATA
* * * * * * * *
702412 AAGTCAACTAGTTCAAAGGATGGCTAGGGT-GAAACCGATAAAGCCAATGGGTTAGAAGGGTTGA
1 AAGTCAACCAATTAAAAGGTTGGCCA-AGTCGAAACCAATAAAGCCAA-CGGTTAGAA-GGTTGA
* * * *
702476 CTAAGGCAAAACCGATG
63 CCAGGGCGAAACCGATA
* * * * * * * * * * *
702493 AAGTTAACAAATTAAAAGGTTGGCTAGGGCAAAATCGATAAAGCTAACTTGTTAGAAGGGTTAAC
1 AAGTCAACCAATTAAAAGGTTGGCCAAGTCGAAACCAATAAAGCCAAC-GGTTAGAA-GGTTGAC
* * * *
702558 TA-GTCTAAAACCAATTA
64 CAGGGC-GAAACCGA-TA
* * * * *
702575 AA-TCAACTAATTAAATGGTTGGCCAAGGCGAAACTAATAAAGCCAACGGGTTAAAAGGGTTGAC
1 AAGTCAACCAATTAAAAGGTTGGCCAAGTCGAAACCAATAAAGCCAAC-GGTTAGAA-GGTTGAC
** * *
702639 CAAAGTGAAATCGATA
64 CAGGGCGAAACCGATA
* * * ** * * * *
702655 AAGTCAACCAATTAAAGGGTTGGCTAGGGT-GAAACTGATAAAGACAACAAGTTAGAAGGGCTAA
1 AAGTCAACCAATTAAAAGGTTGGCCA-AGTCGAAACCAATAAAGCCAAC-GGTTAGAA-GGTTGA
* * *
702719 CTAGGGCAAAACCAATA
63 CCAGGGCGAAACCGATA
* * * * * * * *
702736 AAGTCAACTAGTTAAAAGGTTGGCTAGGGT-GAAGCTAATAAAGCCAATGTATTAGAAGGGTTGA
1 AAGTCAACCAATTAAAAGGTTGGCCA-AGTCGAAACCAATAAAGCCAACG-GTTAGAA-GGTTGA
* * *
702800 CCAAGGCAAAATCGATA
63 CCAGGGCGAAACCGATA
* * * * * *
702817 AAGTCAACCAATTAAAAGGTTAGCCAGGGCAAAACCGATAAAACCAACAGGTTAGAAGGTTGACC
1 AAGTCAACCAATTAAAAGGTTGGCCAAGTCGAAACCAATAAAGCCAAC-GGTTAGAAGGTTGACC
* ** * *
702882 AAGAAGAAACTGGTA
65 AGGGCGAAACCGATA
* * *** * * *
702897 AAGTCAACCAATTAAAAGCTTGGCCAGGGAAAAACCAATGAAGCCAATGGGTTAAAAGGGTTGAC
1 AAGTCAACCAATTAAAAGGTTGGCCAAGTCGAAACCAATAAAGCCAA-CGGTTAGAA-GGTTGAC
** *
702962 CATAGCGAAATCGATA
64 CAGGGCGAAACCGATA
* * * * * * * *
702978 AAGTCAACCAATTAAAGGGTTGGCTAGGGT-AAAACTAATAAAGACAACAAGTTAAAAAGG-TGA
1 AAGTCAACCAATTAAAAGGTTGGCCA-AGTCGAAACCAATAAAGCCAAC-GGTT-AGAAGGTTG-
* * **
703041 ACTAGGGCAAAATTGATA
62 ACCAGGGCGAAACCGATA
703059 AAGT-AACCAATTAAAAGGTTGGC
1 AAGTCAACCAATTAAAAGGTTGGC
703082 TAGGGTGAAG
Statistics
Matches: 1352, Mismatches: 302, Indels: 137
0.75 0.17 0.08
Matches are distributed among these distances:
79 7 0.01
80 209 0.15
81 1069 0.79
82 65 0.05
83 2 0.00
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (79 bp):
AAGTCAACCAATTAAAAGGTTGGCCAAGTCGAAACCAATAAAGCCAACGGTTAGAAGGTTGACCA
GGGCGAAACCGATA
Found at i:701497 original size:121 final size:121
Alignment explanation
Indices: 701351--702922 Score: 361
Period size: 121 Copynumber: 13.0 Consensus size: 121
701341 GATTAGGGCA
* * * ** ** *
701351 AAACCGATAAAGTCATCTAATTAAAAGGTTGTCCAAAGT-GAAATTAATAAAGCCAACGGGTTAG
1 AAACCGATAAAGTCAACCAATTAAAAGGTTGGCC-AAGTCGAAACCAATAAAGCCAACAAGTTAA
* *
701415 AAGGTTTGACCAGGG-CGAAACCGATAAAGTCAACC-ATATAAAAGGTTGGCCAA-GTCG
65 AAGGGTTGACCAGGGTC-AAACCGATAAAGACAACCAAT-TAAAAGGTTGGCCAAGGT-G
* *
701472 AAACCGATAAAGTCAACC-ATATAAAAGGTTGGCCAAGTCGAAACCGATAAAGTCAACAAGTTAA
1 AAACCGATAAAGTCAACCAAT-TAAAAGGTTGGCCAAGTCGAAACCAATAAAGCCAACAAGTTAA
*
701536 AAGGGTTGACCAGGGTCAAACCTATAAAGACAACCAATTAAAAGGTTGGCCAAGGTG
65 AAGGGTTGACCAGGGTCAAACCGATAAAGACAACCAATTAAAAGGTTGGCCAAGGTG
* * *** * * * ** ** *
701593 AAATCGATAAAGCCAACGGGTTAGAAGGGTTGACCAAGGCGAAACTGATAAAGTTAACTAGTTAA
1 AAACCGATAAAGTCAACCAATTA-AAAGGTTGGCCAAGTCGAAACCAATAAAGCCAACAAGTTAA
* * ** **** * *
701658 AA-GGTTGGCTAGGG-CGAAACTAATAAAG-CTAATGGGTTAAAAGGGTTGACCAGGGTG
65 AAGGGTTGACCAGGGTC-AAACCGATAAAGAC-AACCAATTAAAA-GGTTGGCCAAGGTG
* * * * * * * ** * *** *
701715 AAACCAATAAAGTTAACAAATTAAAAGGTTGGCTAGGGCAAAACTGATAAAGCTAATGGGTTAGA
1 AAACCGATAAAGTCAACCAATTAAAAGGTTGGCCAAGTCGAAACCAATAAAGCCAACAAGTTAAA
* * ** * * * *
701780 AGGGTTGACCAGTGTGAAATTGATTAAGTCAACCAATTAAATA-GTTCGCCCAGGTG
66 AGGGTTGACCAGGGTCAAACCGATAAAGACAACCAATTAAA-AGGTTGGCCAAGGTG
** * * * * * * * * * *** *
701836 AAACTAATAAAG-CTAA-TAGGTTAGAAAGGTTGACTAGGGCAAAATCGATAAAAATAACAGGTT
1 AAACCGATAAAGTC-AACCA-ATTA-AAAGGTTGGCCAAGTCGAAACCAATAAAGCCAACAAGTT
* * * * * * *
701899 AGAAGGGTTAACTAGGGTGAAACCGATAAAGTCAACCAATTAAAAGGTTGGCCAGGGAG
63 AAAAGGGTTGACCAGGGTCAAACCGATAAAGACAACCAATTAAAAGGTTGGCCAAGGTG
* * * * * * *
701958 AAACCAATAAAG-CAA--AAGGGTTAAAAGGGTTGACTAAAAT-GAAATCGATAAAGTCAACCAA
1 AAACCGATAAAGTCAACCAA---TTAAAA-GGTTGGC-CAAGTCGAAACCAATAAAGCCAA-CAA
* * * ** * ** * * ** * * *
702019 -TTAAAA-GGTTGGCTAGGGTGAAATAGATAAAGACCATGAGTTAGAAGGGTTAACTAGGGCG
60 GTTAAAAGGGTTGACCAGGGTCAAACCGATAAAGACAACCAATTA-AAAGGTTGGCCAAGGTG
* * * * * *** *
702080 AAACTGATAAAGTCAACTAATTAAAAGGTTGGCTAGGGT-GAAACCAATAAAGCTAATGTGTTAG
1 AAACCGATAAAGTCAACCAATTAAAAGGTTGGCCA-AGTCGAAACCAATAAAGCCAACAAGTTAA
* * * * *
702144 AAGGGCTGAGCAAGG-CAAAACCGATAAAGTCAACCAATTAAAAGGTTGG-CTAGG-G
65 AAGGGTTGACCAGGGTC-AAACCGATAAAGACAACCAATTAAAAGGTTGGCCAAGGTG
* * * * * * * * * *
702199 CAAATCGATAAAG-CTAGCAGGTTAGAAGGTTTGACCAAGGCAAAATCC-ATAAAGTCAACCA-T
1 -AAACCGATAAAGTCAACCA-ATTAAAAGG-TTGGCCAAGTCGAAA-CCAATAAAGCCAACAAGT
* * * *** * * **
702261 ATAAAA-GGTTGGCCAAGGTGAAACCGATAAAGACAACGGGTTAAAAGGGTTGAG-TAGGGCA
62 -TAAAAGGGTTGACCAGGGTCAAACCGATAAAGACAACCAATTAAAA-GGTTG-GCCAAGGTG
** * ** *** *
702322 AAACTAATAAAGGCAACCAATTAAAAGGTTGGCCAGAG-CGAAACTGATAAAGCCAATGGGTTAG
1 AAACCGATAAAGTCAACCAATTAAAAGGTTGGCCA-AGTCGAAACCAATAAAGCCAACAAGTTAA
* ** ** * * * * * * * *
702386 AAGGGTTAACTGGGGAGAAACCAATAAAGTCAACTAGTTCAAAGGATGGCTAGGGTG
65 AAGGGTTGACCAGGGTCAAACCGATAAAGACAACCAATTAAAAGGTTGGCCAAGGTG
* **** * * * * * * * ** *
702443 AAACCGATAAAGCCAATGGGTTAGAAGGGTTGACTAAGGCAAAACCGATGAAGTTAACAAATTAA
1 AAACCGATAAAGTCAACCAATTA-AAAGGTTGGCCAAGTCGAAACCAATAAAGCCAACAAGTTAA
* * * *** * ** * * *
702508 AA-GGTTGGCTAGGG-CAAAATCGATAAAG-CTAACTTGTTAGAAGGGTT-AACTAGTCTA
65 AAGGGTTGACCAGGGTC-AAACCGATAAAGAC-AACCAATTA-AAAGGTTGGCCAAG-GTG
* * * * * **
702565 AAACCAATTAAA-TCAACTAATTAAATGGTTGGCCAAGGCGAAACTAATAAAGCCAACGGGTTAA
1 AAACCGA-TAAAGTCAACCAATTAAAAGGTTGGCCAAGTCGAAACCAATAAAGCCAACAAGTTAA
** * * * * * *
702629 AAGGGTTGACCAAAGTGAAATCGATAAAGTCAACCAATTAAAGGGTTGGCTAGGGTG
65 AAGGGTTGACCAGGGTCAAACCGATAAAGACAACCAATTAAAAGGTTGGCCAAGGTG
* * * * ** * * * * * *
702686 AAACTGATAAAGACAA-CAAGTTAGAAGGGCTAACTAGGGCAAAACCAATAAAGTCAACTAGTTA
1 AAACCGATAAAGTCAACCAA-TTA-AAAGGTTGGCCAAGTCGAAACCAATAAAGCCAACAAGTTA
* * * * ** * *** * * **
702750 AAA-GGTTGGCTAGGGTGAAGCTAATAAAGCCAATGTATTAGAAGGGTTGACCAAGGCA
64 AAAGGGTTGACCAGGGTCAAACCGATAAAGACAACCAATTA-AAAGGTTGGCCAAGGTG
* * * * * * * * *
702808 AAATCGATAAAGTCAACCAATTAAAAGGTTAGCCAGGGCAAAACCGATAAAACCAACAGGTTAGA
1 AAACCGATAAAGTCAACCAATTAAAAGGTTGGCCAAGTCGAAACCAATAAAGCCAACAAGTTAAA
* *** * * * *
702873 A-GGTTGACCAAGAAGAAACTGGTAAAGTCAACCAATTAAAAGCTTGGCCA
66 AGGGTTGACCAGGGTCAAACCGATAAAGACAACCAATTAAAAGGTTGGCCA
702923 GGGAAAAACC
Statistics
Matches: 1053, Mismatches: 334, Indels: 129
0.69 0.22 0.09
Matches are distributed among these distances:
119 4 0.00
120 81 0.08
121 495 0.47
122 451 0.43
123 20 0.02
125 2 0.00
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (121 bp):
AAACCGATAAAGTCAACCAATTAAAAGGTTGGCCAAGTCGAAACCAATAAAGCCAACAAGTTAAA
AGGGTTGACCAGGGTCAAACCGATAAAGACAACCAATTAAAAGGTTGGCCAAGGTG
Found at i:701701 original size:202 final size:201
Alignment explanation
Indices: 701279--701766 Score: 518
Period size: 202 Copynumber: 2.4 Consensus size: 201
701269 AAAATTAACG
* * * * * * * * *
701279 AAGTCAACTAATTAAAAGGTTGGCCAAGGCAAAACCAATAAAGCCAATAGGCTAGAAGGGTTGAT
1 AAGTCAAC-CATTAAAAGGTTGGCCAAGTCGAAACCAATAAAGTCAACAAGTTAAAAGGGTTGAC
* * * * * *
701344 TAGGGCAAAACCGATAAAGTCATCTAATTAAAAGGTTGTCCAAAGTGAAATTAATAAAGCCAACG
65 CAGGGCAAAACCGATAAAGACAACCAATTAAAAGGTTGGCCAAAGTGAAATCAATAAAGCCAACG
* * *
701409 GGTTAGAAGGTTTGACCAGGGCGAAACCGATAAAGTCAACCATATAAAAGGTTGGCCAAGTCGAA
130 GGTTAGAAGGGTTGACCAAGGCGAAACCGATAAAGTCAACCATATAAAAGGTTGGCCAAGGCGAA
*
701474 ACCGATA
195 ACCAATA
*
701481 AAGTCAACCATATAAAAGGTTGGCCAAGTCGAAACCGATAAAGTCAACAAGTTAAAAGGGTTGAC
1 AAGTCAACCAT-TAAAAGGTTGGCCAAGTCGAAACCAATAAAGTCAACAAGTTAAAAGGGTTGAC
* * *
701546 CAGGGTC-AAACCTATAAAGACAACCAATTAAAAGGTTGGCCAAGGTGAAATCGATAAAGCCAAC
65 CAGGG-CAAAACCGATAAAGACAACCAATTAAAAGGTTGGCCAAAGTGAAATCAATAAAGCCAAC
* * * * *
701610 GGGTTAGAAGGGTTGACCAAGGCGAAACTGATAAAGTTAACTAGT-TAAAAGGTTGGCTAGGGCG
129 GGGTTAGAAGGGTTGACCAAGGCGAAACCGATAAAGTCAACCA-TATAAAAGGTTGGCCAAGGCG
*
701674 AAACTAATA
193 AAACCAATA
*** * * * *
701683 AAG-CTAATGGGTTAAAAGGGTTGACCAGGGT-GAAACCAATAAAGTTAACAAATTAAAA-GGTT
1 AAGTC-AA-CCATTAAAA-GGTTGGCCA-AGTCGAAACCAATAAAGTCAACAAGTTAAAAGGGTT
* * *
701745 GGCTAGGGCAAAACTGATAAAG
62 GACCAGGGCAAAACCGATAAAG
701767 CTAATGGGTT
Statistics
Matches: 237, Mismatches: 41, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
201 4 0.02
202 196 0.83
203 35 0.15
204 2 0.01
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.19
Consensus pattern (201 bp):
AAGTCAACCATTAAAAGGTTGGCCAAGTCGAAACCAATAAAGTCAACAAGTTAAAAGGGTTGACC
AGGGCAAAACCGATAAAGACAACCAATTAAAAGGTTGGCCAAAGTGAAATCAATAAAGCCAACGG
GTTAGAAGGGTTGACCAAGGCGAAACCGATAAAGTCAACCATATAAAAGGTTGGCCAAGGCGAAA
CCAATA
Found at i:701820 original size:122 final size:122
Alignment explanation
Indices: 701409--701970 Score: 342
Period size: 122 Copynumber: 4.6 Consensus size: 122
701399 AAAGCCAACG
* * * * *
701409 GGTTAGAAGGTTTGACCAGGGCGAAACCGATAAAGTCAACC-ATATAAAAGGTTGGCCA-AGTCG
1 GGTTAGAAGGGTTAACCAGGGTGAAACCGATAAAGTCAACCAAT-TAAAAGGTTGACCAGGGT-G
* * * * * * * * *
701472 AAACCGATAAAG-TCAAC-CATATA-AAAGGTTGGCCAAGTCGAAACCGAT-AAAGTCAACA
64 AAACCAATAAAGCT-AACAAAT-TAGAAAGGTTGACTAGGGCAAAATCGATAAAAAT-AACA
* * * * * * * *
701530 AGTTAAAAGGGTTGACCAGGGTCAAACCTATAAAGACAACCAATTAAAAGGTTGGCCAAGGTGAA
1 GGTTAGAAGGGTTAACCAGGGTGAAACCGATAAAGTCAACCAATTAAAAGGTTGACCAGGGTGAA
* * * *** * * * * **
701595 ATCGATAAAGCCAACGGGTTAGAAGGGTTGACCAAGGCGAAA-CTGATAAAGTTAACTA
66 ACCAATAAAGCTAACAAATTAGAAAGGTTGACTAGGGCAAAATC-GATAAAAATAAC-A
* ** * * ** ****
701653 -GTTA-AAAGGTTGGCTAGGGCGAAACTAATAAAG-CTAATGGGTTAAAAGGGTTGACCAGGGTG
1 GGTTAGAAGGGTTAACCAGGGTGAAACCGATAAAGTC-AACCAATTAAAA-GGTTGACCAGGGTG
* * ** **
701715 AAACCAATAAAGTTAACAAATTA-AAAGGTTGGCTAGGGCAAAA-CTGATAAAGCTAATG
64 AAACCAATAAAGCTAACAAATTAGAAAGGTTGACTAGGGCAAAATC-GATAAAAATAACA
* * ** * *
701773 GGTTAGAAGGGTTGACCAGTGTGAAATTGATTAAGTCAACCAATTAAATA-GTTCGCCCA-GGTG
1 GGTTAGAAGGGTTAACCAGGGTGAAACCGATAAAGTCAACCAATTAAA-AGGTT-GACCAGGGTG
* * **
701836 AAACTAATAAAGCTAATAGGTTAGAAAGGTTGACTAGGGCAAAATCGATAAAAATAACA
64 AAACCAATAAAGCTAACAAATTAGAAAGGTTGACTAGGGCAAAATCGATAAAAATAACA
* * *
701895 GGTTAGAAGGGTTAACTAGGGTGAAACCGATAAAGTCAACCAATTAAAAGGTTGGCCAGGGAGAA
1 GGTTAGAAGGGTTAACCAGGGTGAAACCGATAAAGTCAACCAATTAAAAGGTTGACCAGGGTGAA
701960 ACCAATAAAGC
66 ACCAATAAAGC
701971 AAAAGGGTTA
Statistics
Matches: 345, Mismatches: 77, Indels: 37
0.75 0.17 0.08
Matches are distributed among these distances:
120 1 0.00
121 157 0.46
122 180 0.52
123 7 0.02
ACGTcount: A:0.41, C:0.14, G:0.25, T:0.20
Consensus pattern (122 bp):
GGTTAGAAGGGTTAACCAGGGTGAAACCGATAAAGTCAACCAATTAAAAGGTTGACCAGGGTGAA
ACCAATAAAGCTAACAAATTAGAAAGGTTGACTAGGGCAAAATCGATAAAAATAACA
Found at i:702003 original size:122 final size:122
Alignment explanation
Indices: 701773--702009 Score: 275
Period size: 122 Copynumber: 1.9 Consensus size: 122
701763 AAAGCTAATG
* * ** * *
701773 GGTTAGAAGGGTTGACCAGTGTGAAATTGATTAAGTCAACCAATTAAATAGTTCGCCCAGGTGAA
1 GGTTAGAAGGGTTAACCAGGGTGAAACCGATAAAGTCAACCAATTAAATAGTTCGCCCAGGAGAA
* * ***
701838 ACTAATAAAGCTAATAGGTTAGAAAGGTTGACTAGGGCAAAATCGATAAAAATAACA
66 ACCAATAAAGCTAAAAGGTTAGAAAGGTTGACTAAAACAAAATCGATAAAAATAACA
* *
701895 GGTTAGAAGGGTTAACTAGGGTGAAACCGATAAAGTCAACCAATTAAA-AGGTT-GGCCAGGGAG
1 GGTTAGAAGGGTTAACCAGGGTGAAACCGATAAAGTCAACCAATTAAATA-GTTCGCCCA-GGAG
**
701958 AAACCAATAAAGC-AAAAGGGTTA-AAAGGGTTGACTAAAATGAAATCGATAAA
64 AAACCAATAAAGCTAAAA-GGTTAGAAA-GGTTGACTAAAACAAAATCGATAAA
702010 GTCAACCAAT
Statistics
Matches: 96, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
121 11 0.11
122 85 0.89
ACGTcount: A:0.43, C:0.12, G:0.24, T:0.21
Consensus pattern (122 bp):
GGTTAGAAGGGTTAACCAGGGTGAAACCGATAAAGTCAACCAATTAAATAGTTCGCCCAGGAGAA
ACCAATAAAGCTAAAAGGTTAGAAAGGTTGACTAAAACAAAATCGATAAAAATAACA
Found at i:702127 original size:162 final size:162
Alignment explanation
Indices: 701860--703101 Score: 1107
Period size: 162 Copynumber: 7.7 Consensus size: 162
701850 AATAGGTTAG
* * * * *
701860 AAAGGTTGACTAGGGCAAAATCGATAAAAATAA-CAGGTTAGAAGGGTTAACTAGGGTGAAACCG
1 AAAGGTTGGCTAGGGCAAAATCGATAAAGACAATGA-GTTAGAAGGGTTAACTAGGGCGAAACCG
* * * *
701924 ATAAAGTCAACCAATTAAAAGGTTGGCCAGGGAGAAACCAATAAAGCAAAAGGGTTAAAAGGGTT
65 ATAAAGTCAACTAATTAAAAGGTTGGCCAGGGTGAAACCAATAAAGCCAATGGGTTAAAAGGGTT
* **
701989 GACTAAAATGAAATCGATAAAGTCAACCAATTA
130 GACCAAAGCGAAATCGATAAAGTCAACCAATTA
** * * *
702022 AAAGGTTGGCTAGGGTGAAATAGATAAAGACCATGAGTTAGAAGGGTTAACTAGGGCGAAACTGA
1 AAAGGTTGGCTAGGGCAAAATCGATAAAGACAATGAGTTAGAAGGGTTAACTAGGGCGAAACCGA
* * * * *
702087 TAAAGTCAACTAATTAAAAGGTTGGCTAGGGTGAAACCAATAAAGCTAATGTGTTAGAAGGGCTG
66 TAAAGTCAACTAATTAAAAGGTTGGCCAGGGTGAAACCAATAAAGCCAATGGGTTAAAAGGGTTG
* * * *
702152 AGCAAGGCAAAACCGATAAAGTCAACCAATTA
131 ACCAAAGCGAAATCGATAAAGTCAACCAATTA
* * * * * *
702184 AAAGGTTGGCTAGGGC-AAATCGATAAAG-CTA-GCAGGTTAGAAGGTTTGACCAAGGCAAAATC
1 AAAGGTTGGCTAGGGCAAAATCGATAAAGACAATG-A-GTTAGAAGGGTTAACTAGGGCGAAA-C
* * * * *
702246 C-ATAAAGTCAAC-CATATAAAAGGTTGGCCAAGGTGAAACCGATAAAGACAACGGGTTAAAAGG
63 CGATAAAGTCAACTAAT-TAAAAGGTTGGCCAGGGTGAAACCAATAAAGCCAATGGGTTAAAAGG
** ** * * *
702309 GTTGAGTAGGGC-AAAACTAATAAAGGCAACCAATTA
127 GTTGACCAAAGCGAAATC-GATAAAGTCAACCAATTA
* * * * * * * *
702345 AAAGGTTGGCCAGAGCGAAA-CTGATAAAGCCAATGGGTTAGAAGGGTTAACTGGGGAGAAACCA
1 AAAGGTTGGCTAGGGCAAAATC-GATAAAGACAATGAGTTAGAAGGGTTAACTAGGGCGAAACCG
* * * * * *
702409 ATAAAGTCAACTAGTTCAAAGGATGGCTAGGGTGAAACCGATAAAGCCAATGGGTTAGAAGGGTT
65 ATAAAGTCAACTAATTAAAAGGTTGGCCAGGGTGAAACCAATAAAGCCAATGGGTTAAAAGGGTT
* * * * * * *
702474 GACTAAGGCAAAACCGATGAAGTTAACAAATTA
130 GACCAAAGCGAAATCGATAAAGTCAACCAATTA
* * *
702507 AAAGGTTGGCTAGGGCAAAATCGATAAAG-CTAACT-TGTTAGAAGGGTTAACTA-GTCTAAAAC
1 AAAGGTTGGCTAGGGCAAAATCGATAAAGAC-AA-TGAGTTAGAAGGGTTAACTAGGGC-GAAAC
* * * * * *
702569 CAATTAAA-TCAACTAATTAAATGGTTGGCCAAGGCGAAACTAATAAAGCCAACGGGTTAAAAGG
63 CGA-TAAAGTCAACTAATTAAAAGGTTGGCCAGGGTGAAACCAATAAAGCCAATGGGTTAAAAGG
*
702633 GTTGACCAAAGTGAAATCGATAAAGTCAACCAATTA
127 GTTGACCAAAGCGAAATCGATAAAGTCAACCAATTA
* ** ** * * *
702669 AAGGGTTGGCTAGGGTGAAA-CTGATAAAGACAACAAGTTAGAAGGGCTAACTAGGGCAAAACCA
1 AAAGGTTGGCTAGGGCAAAATC-GATAAAGACAATGAGTTAGAAGGGTTAACTAGGGCGAAACCG
* * * * ** *
702733 ATAAAGTCAACTAGTTAAAAGGTTGGCTAGGGTGAAGCTAATAAAGCCAATGTATTAGAAGGGTT
65 ATAAAGTCAACTAATTAAAAGGTTGGCCAGGGTGAAACCAATAAAGCCAATGGGTTAAAAGGGTT
* *
702798 GACCAAGGCAAAATCGATAAAGTCAACCAATTA
130 GACCAAAGCGAAATCGATAAAGTCAACCAATTA
* * * * * * * ** *
702831 AAAGGTTAGCCAGGGCAAAACCGATAAA-ACCAA-CAGGTTAGAA-GGTTGACCAAGAAGAAACT
1 AAAGGTTGGCTAGGGCAAAATCGATAAAGA-CAATGA-GTTAGAAGGGTTAACTAGGGCGAAACC
* * * ** *
702893 GGTAAAGTCAACCAATTAAAAGCTTGGCCAGGGAAAAACCAATGAAGCCAATGGGTTAAAAGGGT
64 GATAAAGTCAACTAATTAAAAGGTTGGCCAGGGTGAAACCAATAAAGCCAATGGGTTAAAAGGGT
*
702958 TGACCATAGCGAAATCGATAAAGTCAACCAATTA
129 TGACCAAAGCGAAATCGATAAAGTCAACCAATTA
* * * ** * * * * **
702992 AAGGGTTGGCTAGGGTAAAA-CTAATAAAGACAACAAGTTAAAAAGGTGAACTAGGGCAAAATTG
1 AAAGGTTGGCTAGGGCAAAATC-GATAAAGACAATGAGTTAGAAGGGTTAACTAGGGCGAAACCG
* * * *
703056 ATAAAGT-AACCAATTAAAAGGTTGGCTAGGGTGAAGCCAACAAAGC
65 ATAAAGTCAACTAATTAAAAGGTTGGCCAGGGTGAAACCAATAAAGC
703102 TAATCGATAA
Statistics
Matches: 872, Mismatches: 178, Indels: 61
0.78 0.16 0.05
Matches are distributed among these distances:
159 1 0.00
160 10 0.01
161 287 0.33
162 555 0.64
163 18 0.02
164 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.25, T:0.19
Consensus pattern (162 bp):
AAAGGTTGGCTAGGGCAAAATCGATAAAGACAATGAGTTAGAAGGGTTAACTAGGGCGAAACCGA
TAAAGTCAACTAATTAAAAGGTTGGCCAGGGTGAAACCAATAAAGCCAATGGGTTAAAAGGGTTG
ACCAAAGCGAAATCGATAAAGTCAACCAATTA
Found at i:702849 original size:40 final size:40
Alignment explanation
Indices: 701345--703086 Score: 269
Period size: 40 Copynumber: 43.1 Consensus size: 40
701335 AGGGTTGATT
* * * *
701345 AGGGCAAAACCGATAAAGTCATCTAATTAAAAGGTTGTCC
1 AGGGCAAAATCGATAAAGTCAACCAATTAAAAGGTTGGCC
** ** ** * *** * *
701385 AAAGTGAAATTAATAAAGCCAACGGGTTAGAAGGTTTGACC
1 AGGGCAAAATCGATAAAGTCAACCAATTAAAAGG-TTGGCC
* *
701426 AGGGCGAAACCGATAAAGTCAACC-ATATAAAAGGTTGGCC
1 AGGGCAAAATCGATAAAGTCAACCAAT-TAAAAGGTTGGCC
* * * *
701466 AAGTCGAAACCGATAAAGTCAACC-ATATAAAAGGTTGGCC
1 AGGGCAAAATCGATAAAGTCAACCAAT-TAAAAGGTTGGCC
* * * * *
701506 AAGTCGAAACCGATAAAGTCAA-CAAGTTAAAAGGGTTGACC
1 AGGGCAAAATCGATAAAGTCAACCAA-TTAAAA-GGTTGGCC
* * *
701547 AGGGTC-AAACCTATAAAGACAACCAATTAAAAGGTTGGCC
1 AGGG-CAAAATCGATAAAGTCAACCAATTAAAAGGTTGGCC
* ** * *** * *
701587 AAGGTGAAATCGATAAAGCCAACGGGTTAGAAGGGTTGACC
1 AGGGCAAAATCGATAAAGTCAACCAATTA-AAAGGTTGGCC
* * * * * *
701628 AAGGCGAAA-CTGATAAAGTTAACTAGTTAAAAGGTTGGCT
1 AGGGCAAAATC-GATAAAGTCAACCAATTAAAAGGTTGGCC
* * **** *
701668 AGGGCGAAA-CTAATAAAG-CTAATGGGTTAAAAGGGTTGACC
1 AGGGCAAAATC-GATAAAGTC-AACCAATTAAAA-GGTTGGCC
** * * * * *
701709 AGGGTGAAACCAATAAAGTTAACAAATTAAAAGGTTGGCT
1 AGGGCAAAATCGATAAAGTCAACCAATTAAAAGGTTGGCC
**** * *
701749 AGGGCAAAA-CTGATAAAG-CTAATGGGTTAGAAGGGTTGACC
1 AGGGCAAAATC-GATAAAGTC-AACCAATTA-AAAGGTTGGCC
* ** * * *
701790 AGTGTGAAATTGATTAAGTCAACCAATTAAATA-GTTCGCCC
1 AGGGCAAAATCGATAAAGTCAACCAATTAAA-AGGTT-GGCC
* * * * * *
701831 AGGTG-AAACT-AATAAAG-CTAA-TAGGTTAGAAAGGTTGACT
1 AGG-GCAAAATCGATAAAGTC-AACCA-ATTA-AAAGGTTGGCC
* * * ** *
701871 AGGGCAAAATCGATAAAAAT-AA-CAGGTTAGAAGGGTTAACT
1 AGGGCAAAATCGAT-AAAGTCAACCA-ATTA-AAAGGTTGGCC
** *
701912 AGGGTGAAACCGATAAAGTCAACCAATTAAAAGGTTGGCC
1 AGGGCAAAATCGATAAAGTCAACCAATTAAAAGGTTGGCC
* * * *
701952 AGGG-AGAAACCAATAAAG-CAA--AAGGGTTAAAAGGGTTGACT
1 AGGGCA-AAATCGATAAAGTCAACCAA---TTAAAA-GGTTGGCC
***** *
701993 AAAATGAAATCGATAAAGTCAACCAATTAAAAGGTTGGCT
1 AGGGCAAAATCGATAAAGTCAACCAATTAAAAGGTTGGCC
** * * * ** * * ** *
702033 AGGGTGAAATAGATAAAGACCATGAGTTAGAAGGGTTAACT
1 AGGGCAAAATCGATAAAGTCAACCAATTA-AAAGGTTGGCC
* * *
702074 AGGGCGAAA-CTGATAAAGTCAACTAATTAAAAGGTTGGCT
1 AGGGCAAAATC-GATAAAGTCAACCAATTAAAAGGTTGGCC
** * * **** * *
702114 AGGGTGAAACCAATAAAG-CTAATGTGTTAGAAGGGCTGAG-C
1 AGGGCAAAATCGATAAAGTC-AACCAATTA-AAAGGTTG-GCC
* * *
702155 AAGGCAAAACCGATAAAGTCAACCAATTAAAAGGTTGGCT
1 AGGGCAAAATCGATAAAGTCAACCAATTAAAAGGTTGGCC
* * * * *
702195 AGGGC-AAATCGATAAAG-CTAGCAGGTTAGAAGGTTTGACC
1 AGGGCAAAATCGATAAAGTCAACCA-ATTAAAAGG-TTGGCC
* *
702235 AAGGCAAAATCCATAAAGTCAACC-ATATAAAAGGTTGGCC
1 AGGGCAAAATCGATAAAGTCAACCAAT-TAAAAGGTTGGCC
* ** * * *** *
702275 AAGGTGAAACCGATAAAGACAACGGGTTAAAAGGGTTGAG-T
1 AGGGCAAAATCGATAAAGTCAACCAATTAAAA-GGTTG-GCC
* *
702316 AGGGCAAAA-CTAATAAAGGCAACCAATTAAAAGGTTGGCC
1 AGGGCAAAATC-GATAAAGTCAACCAATTAAAAGGTTGGCC
* * * **** * **
702356 AGAGCGAAA-CTGATAAAGCCAATGGGTTAGAAGGGTT-AAC
1 AGGGCAAAATC-GATAAAGTCAACCAATTA-AAAGGTTGGCC
* * * * * * * * *
702396 TGGGGAGAAACCAATAAAGTCAACTAGTTCAAAGGATGGCT
1 AGGGCA-AAATCGATAAAGTCAACCAATTAAAAGGTTGGCC
** * * **** * * *
702437 AGGGTGAAACCGATAAAGCCAATGGGTTAGAAGGGTTGACT
1 AGGGCAAAATCGATAAAGTCAACCAATTA-AAAGGTTGGCC
* * * * * *
702478 AAGGCAAAACCGATGAAGTTAACAAATTAAAAGGTTGGCT
1 AGGGCAAAATCGATAAAGTCAACCAATTAAAAGGTTGGCC
*** * ** *
702518 AGGGCAAAATCGATAAAG-CTAACTTGTTAGAAGGGTTAACT
1 AGGGCAAAATCGATAAAGTC-AACCAATTA-AAAGGTTGGCC
* * * * *
702559 A-GTCTAAAACCAATTAAA-TCAACTAATTAAATGGTTGGCC
1 AGGGC-AAAATCGA-TAAAGTCAACCAATTAAAAGGTTGGCC
* * * * *** *
702599 AAGGCGAAA-CTAATAAAGCCAACGGGTTAAAAGGGTTGACC
1 AGGGCAAAATC-GATAAAGTCAACCAATTAAAA-GGTTGGCC
** ** * *
702640 AAAGTGAAATCGATAAAGTCAACCAATTAAAGGGTTGGCT
1 AGGGCAAAATCGATAAAGTCAACCAATTAAAAGGTTGGCC
** * * * ** *
702680 AGGGTGAAA-CTGATAAAGACAA-CAAGTTAGAAGGGCTAACT
1 AGGGCAAAATC-GATAAAGTCAACCAA-TTA-AAAGGTTGGCC
* * * * *
702721 AGGGCAAAACCAATAAAGTCAACTAGTTAAAAGGTTGGCT
1 AGGGCAAAATCGATAAAGTCAACCAATTAAAAGGTTGGCC
** * * * *** * *
702761 AGGG-TGAAGCTAATAAAGCCAATGTATTAGAAGGGTTGACC
1 AGGGCAAAATC-GATAAAGTCAACCAATTA-AAAGGTTGGCC
* *
702802 AAGGCAAAATCGATAAAGTCAACCAATTAAAAGGTTAGCC
1 AGGGCAAAATCGATAAAGTCAACCAATTAAAAGGTTGGCC
* ** * * *
702842 AGGGCAAAACCGATAAAACCAA-CAGGTTAGAAGGTTGACC
1 AGGGCAAAATCGATAAAGTCAACCA-ATTAAAAGGTTGGCC
* * * *
702882 A-AG-AAGAAACTGGTAAAGTCAACCAATTAAAAGCTTGGCC
1 AGGGCAA-AATC-GATAAAGTCAACCAATTAAAAGGTTGGCC
* * * * * **** *
702922 AGGGAAAAACCAATGAAGCCAATGGGTTAAAAGGGTTGACC
1 AGGGCAAAATCGATAAAGTCAACCAATTAAAA-GGTTGGCC
** * * *
702963 ATAGCGAAATCGATAAAGTCAACCAATTAAAGGGTTGGCT
1 AGGGCAAAATCGATAAAGTCAACCAATTAAAAGGTTGGCC
* * * * *
703003 AGGGTAAAA-CTAATAAAGACAA-CAAGTTAAAAAGG-TGAACT
1 AGGGCAAAATC-GATAAAGTCAACCAA-TT-AAAAGGTTG-GCC
* *
703044 AGGGCAAAATTGATAAAGT-AACCAATTAAAAGGTTGGCT
1 AGGGCAAAATCGATAAAGTCAACCAATTAAAAGGTTGGCC
703083 AGGG
1 AGGG
703087 TGAAGCCAAC
Statistics
Matches: 1225, Mismatches: 381, Indels: 193
0.68 0.21 0.11
Matches are distributed among these distances:
37 2 0.00
38 6 0.00
39 63 0.05
40 593 0.48
41 524 0.43
42 35 0.03
44 2 0.00
ACGTcount: A:0.42, C:0.14, G:0.25, T:0.20
Consensus pattern (40 bp):
AGGGCAAAATCGATAAAGTCAACCAATTAAAAGGTTGGCC
Found at i:703049 original size:323 final size:324
Alignment explanation
Indices: 701860--703101 Score: 1430
Period size: 323 Copynumber: 3.8 Consensus size: 324
701850 AATAGGTTAG
* * * * * ** *
701860 AAAGGTTGACTAGGGCAAAATCGATAAAAATAACAGGTTAGAAGGGTTAACTAGGGTGAAACCGA
1 AAAGGTTGGCTAGGGCAAAATCGATAAAACTAACAGGTTAGAAGGGTTGACCAAGAAGAAACTGA
* * *
701925 TAAAGTCAACCAATTAAAAGGTTGGCCAGGGAGAAACCAATAAAGCAAAAGGGTTAAAAGGGTTG
66 TAAAGTCAACCAATTAAAAGGTTGGCCAAGGAGAAACCAATAAAGCCAACGGGTTAAAAGGGTTG
* * *
701990 ACTAAAATGAAATCGATAAAGTCAACCAATTAAAAGGTTGGCTAGGGTGAAA-TAGATAAAGACC
131 ACCAAAGTGAAATCGATAAAGTCAACCAATTAAAAGGTTGGCTAGGGTGAAACTA-ATAAAGACA
** * **
702054 ATGAGTTAGAAGGGTTAACTAGGGCGAAACTGATAAAGTCAACTAATTAAAAGGTTGGCTAGGGT
195 ACAAGTTAGAAGGGTTAACTAGGGCAAAACCAATAAAGTCAACTAATTAAAAGGTTGGCTAGGGT
* * *
702119 GAAACCAATAAAGCTAATGTGTTAGAAGGGCTGAGCAAGGCAAAACCGATAAAGTCAACCAATTA
260 GAAACCAATAAAGCCAATGTGTTAGAAGGGTTGACCAAGGCAAAACCGATAAAGTCAACCAATTA
* * * *
702184 AAAGGTTGGCTAGGGC-AAATCGATAAAGCTAGCAGGTTAGAAGGTTTGACCAAG--GCAAAATC
1 AAAGGTTGGCTAGGGCAAAATCGATAAAACTAACAGGTTAGAAGGGTTGACCAAGAAG-AAACT-
* * * *
702246 CATAAAGTCAACC-ATATAAAAGGTTGGCCAAGGTGAAACCGATAAAGACAACGGGTTAAAAGGG
64 GATAAAGTCAACCAAT-TAAAAGGTTGGCCAAGGAGAAACCAATAAAGCCAACGGGTTAAAAGGG
** * * * * * * * *
702310 TTGA--GTAGGGCAAAACTAATAAAGGCAACCAATTAAAAGGTTGGCCAGAGCGAAACTGATAAA
128 TTGACCAAAGTG-AAATC-GATAAAGTCAACCAATTAAAAGGTTGGCTAGGGTGAAACTAATAAA
* *** * * * *
702373 GCCAATGGGTTAGAAGGGTTAACT-GGGGAGAAACCAATAAAGTCAACTAGTTCAAAGGATGGCT
191 GACAACAAGTTAGAAGGGTTAACTAGGGCA-AAACCAATAAAGTCAACTAATTAAAAGGTTGGCT
* * * * * *
702437 AGGGTGAAACCGATAAAGCCAATGGGTTAGAAGGGTTGACTAAGGCAAAACCGATGAAGTTAACA
255 AGGGTGAAACCAATAAAGCCAATGTGTTAGAAGGGTTGACCAAGGCAAAACCGATAAAGTCAACC
702502 AATTA
320 AATTA
* ** * * * *
702507 AAAGGTTGGCTAGGGCAAAATCGATAAAGCTAACTTGTTAGAAGGGTT-AACTAGTCTA-AAACC
1 AAAGGTTGGCTAGGGCAAAATCGATAAAACTAACAGGTTAGAAGGGTTGACCAAG--AAGAAACT
* * * * *
702570 AATTAAA-TCAACTAATTAAATGGTTGGCCAAGGCGAAACTAATAAAGCCAACGGGTTAAAAGGG
64 GA-TAAAGTCAACCAATTAAAAGGTTGGCCAAGGAGAAACCAATAAAGCCAACGGGTTAAAAGGG
* *
702634 TTGACCAAAGTGAAATCGATAAAGTCAACCAATTAAAGGGTTGGCTAGGGTGAAACTGATAAAGA
128 TTGACCAAAGTGAAATCGATAAAGTCAACCAATTAAAAGGTTGGCTAGGGTGAAACTAATAAAGA
* *
702699 CAACAAGTTAGAAGGGCTAACTAGGGCAAAACCAATAAAGTCAACTAGTTAAAAGGTTGGCTAGG
193 CAACAAGTTAGAAGGGTTAACTAGGGCAAAACCAATAAAGTCAACTAATTAAAAGGTTGGCTAGG
* * * *
702764 GTGAAGCTAATAAAGCCAATGTATTAGAAGGGTTGACCAAGGCAAAATCGATAAAGTCAACCAAT
258 GTGAAACCAATAAAGCCAATGTGTTAGAAGGGTTGACCAAGGCAAAACCGATAAAGTCAACCAAT
702829 TA
323 TA
* * * * *
702831 AAAGGTTAGCCAGGGCAAAACCGATAAAACCAACAGGTTAGAA-GGTTGACCAAGAAGAAACTGG
1 AAAGGTTGGCTAGGGCAAAATCGATAAAACTAACAGGTTAGAAGGGTTGACCAAGAAGAAACTGA
* * * * *
702895 TAAAGTCAACCAATTAAAAGCTTGGCCAGGGAAAAACCAATGAAGCCAATGGGTTAAAAGGGTTG
66 TAAAGTCAACCAATTAAAAGGTTGGCCAAGGAGAAACCAATAAAGCCAACGGGTTAAAAGGGTTG
* * * *
702960 ACCATAGCGAAATCGATAAAGTCAACCAATTAAAGGGTTGGCTAGGGTAAAACTAATAAAGACAA
131 ACCAAAGTGAAATCGATAAAGTCAACCAATTAAAAGGTTGGCTAGGGTGAAACTAATAAAGACAA
* * * *** *
703025 CAAGTTAAAAAGGTGAACTAGGGCAAAATTGATAAAGT-AACCAATTAAAAGGTTGGCTAGGGTG
196 CAAGTTAGAAGGGTTAACTAGGGCAAAACCAATAAAGTCAACTAATTAAAAGGTTGGCTAGGGTG
* *
703089 AAGCCAACAAAGC
261 AAACCAATAAAGC
703102 TAATCGATAA
Statistics
Matches: 771, Mismatches: 127, Indels: 42
0.82 0.14 0.04
Matches are distributed among these distances:
321 3 0.00
322 52 0.07
323 409 0.53
324 287 0.37
325 17 0.02
326 3 0.00
ACGTcount: A:0.42, C:0.14, G:0.25, T:0.19
Consensus pattern (324 bp):
AAAGGTTGGCTAGGGCAAAATCGATAAAACTAACAGGTTAGAAGGGTTGACCAAGAAGAAACTGA
TAAAGTCAACCAATTAAAAGGTTGGCCAAGGAGAAACCAATAAAGCCAACGGGTTAAAAGGGTTG
ACCAAAGTGAAATCGATAAAGTCAACCAATTAAAAGGTTGGCTAGGGTGAAACTAATAAAGACAA
CAAGTTAGAAGGGTTAACTAGGGCAAAACCAATAAAGTCAACTAATTAAAAGGTTGGCTAGGGTG
AAACCAATAAAGCCAATGTGTTAGAAGGGTTGACCAAGGCAAAACCGATAAAGTCAACCAATTA
Found at i:703150 original size:40 final size:39
Alignment explanation
Indices: 703107--703450 Score: 178
Period size: 40 Copynumber: 8.5 Consensus size: 39
703097 AAAGCTAATC
* *
703107 GATAAAGTCAACCAATTAAAAGGTTGGCCAAGGTGAAACC
1 GATAAAGTCAACCAATTAAAAGGTTGACCAAGG-GAAACT
* * *
703147 GATAAAGCCAACGAGTTAAAAAGGTTGACC-AGGGCCAAACT
1 GATAAAGTCAACCAATT-AAAAGGTTGACCAAGGG--AAACT
* ** *
703188 AATAAAGTCAACTTATTAAAAGGTTG-CCTAGGGCAAAACT
1 GATAAAGTCAACCAATTAAAAGGTTGACCAAGGG--AAACT
* * * * * * *
703228 GATAAAGCCAACGAGTTAGAAGGGTTGACTAAAGCAAACT
1 GATAAAGTCAACCAATTA-AAAGGTTGACCAAGGGAAACT
* * * *
703268 GATGAAGTTAACTAATTAAAAGGTTGGCC-AGGGCATAACT
1 GATAAAGTCAACCAATTAAAAGGTTGACCAAGGG-A-AACT
* * * * *
703308 GATAAAGCCAA-TAGGTTAAAAAGGTTGACAAAGGTGAAATT
1 GATAAAGTCAACCA-ATT-AAAAGGTTGACCAAGG-GAAACT
* * *
703349 GAAAAAGTCAACCAATTGAAAGGTTGGCC-AGGGTAAAAC-
1 GATAAAGTCAACCAATTAAAAGGTTGACCAAGGG--AAACT
* * * * *
703388 CATTAAAGCCAACAAATTAAAAGGTTTGACCAAGGCAAAAT
1 GA-TAAAGTCAACCAATTAAAAGG-TTGACCAAGGGAAACT
* *
703429 CAATAAAGTCAACCATTTAAAA
1 -GATAAAGTCAACCAATTAAAA
703451 AATGACATCT
Statistics
Matches: 226, Mismatches: 58, Indels: 39
0.70 0.18 0.12
Matches are distributed among these distances:
38 3 0.01
39 18 0.08
40 113 0.50
41 79 0.35
42 12 0.05
43 1 0.00
ACGTcount: A:0.44, C:0.15, G:0.21, T:0.20
Consensus pattern (39 bp):
GATAAAGTCAACCAATTAAAAGGTTGACCAAGGGAAACT
Found at i:703243 original size:81 final size:81
Alignment explanation
Indices: 703108--703450 Score: 331
Period size: 81 Copynumber: 4.2 Consensus size: 81
703098 AAGCTAATCG
* ** *
703108 ATAAAGTCAACCAATTAAAAGGTTGGCCAAGGTGAAACCGATAAAGCCAACGAGTTAAAAAGGTT
1 ATAAAGTCAACCAATTAAAAGGTTGGCCAGGGCAAAACTGATAAAGCCAACGAGTTAAAAAGGTT
*
703173 GACCAGGGCCAAACT-A
66 GACCAAGG-CAAACTCA
** * *
703189 ATAAAGTCAACTTATTAAAAGGTT-GCCTAGGGCAAAACTGATAAAGCCAACGAGTTAGAAGGGT
1 ATAAAGTCAACCAATTAAAAGGTTGGCC-AGGGCAAAACTGATAAAGCCAACGAGTTAAAAAGGT
* * *
703253 TGACTAAAGCAAACT-G
65 TGACCAAGGCAAACTCA
* * * * *
703269 ATGAAGTTAACTAATTAAAAGGTTGGCCAGGGCATAACTGATAAAGCCAA-TAGGTTAAAAAGGT
1 ATAAAGTCAACCAATTAAAAGGTTGGCCAGGGCAAAACTGATAAAGCCAACGA-GTTAAAAAGGT
* * * *
703333 TGACAAAGGTGAAATTGA
65 TGACCAAGG-CAAACTCA
* * * * *
703351 A-AAAGTCAACCAATTGAAAGGTTGGCCAGGGTAAAAC-CATTAAAGCCAACAAATT-AAAAGGT
1 ATAAAGTCAACCAATTAAAAGGTTGGCCAGGGCAAAACTGA-TAAAGCCAACGAGTTAAAAAGG-
*
703413 TTGACCAAGGCAAAATCA
64 TTGACCAAGGCAAACTCA
*
703431 ATAAAGTCAACCATTTAAAA
1 ATAAAGTCAACCAATTAAAA
703451 AATGACATCT
Statistics
Matches: 214, Mismatches: 39, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
79 1 0.00
80 80 0.37
81 131 0.61
82 2 0.01
ACGTcount: A:0.44, C:0.15, G:0.21, T:0.20
Consensus pattern (81 bp):
ATAAAGTCAACCAATTAAAAGGTTGGCCAGGGCAAAACTGATAAAGCCAACGAGTTAAAAAGGTT
GACCAAGGCAAACTCA
Found at i:703287 original size:214 final size:214
Alignment explanation
Indices: 702895--703300 Score: 503
Period size: 214 Copynumber: 1.9 Consensus size: 214
702885 AAGAAACTGG
* * * * *
702895 TAAAGTCAACCAATTAAAAGCTTGGCCAGGGAAAAACCAATGAAGCCAATGGGTTAAAAGGGTTG
1 TAAAGTCAACCAATTAAAAGCTTGGCCAAGGAAAAACCAATAAAGCCAACGAGTTAAAAAGGTTG
* * * * * *
702960 ACCATAGCGAAATCGATAAAGTCAACCAATTAAAGGGTTGGCTAGGGTAAAACTAATAAAGACAA
66 ACCAGAGCCAAATCAATAAAGTCAACCAATTAAAAGGTTGCCTAGGGCAAAACTAATAAAGACAA
** * *
703025 CAAGTTAAAAAGGTGAACTAGGGCAAAATTGATAAAGTAACCAATTAAAAGGTTGGCTAGGGTGA
131 CAAGTTAAAAAGGTGAACTAAAGCAAAACTGATAAAGTAACCAATTAAAAGGTTGGCCAGGGTGA
703090 AGCCAACAAAGCTAATCGA
196 AGCCAACAAAGCTAATCGA
* ** *
703109 TAAAGTCAACCAATTAAAAGGTTGGCCAAGGTGAAACCGATAAAGCCAACGAGTTAAAAAGGTTG
1 TAAAGTCAACCAATTAAAAGCTTGGCCAAGGAAAAACCAATAAAGCCAACGAGTTAAAAAGGTTG
* ** * *
703174 ACCAGGGCCAAA-CTAATAAAGTCAACTTATTAAAAGGTTGCCTAGGGCAAAACTGATAAAGCCA
66 ACCAGAGCCAAATC-AATAAAGTCAACCAATTAAAAGGTTGCCTAGGGCAAAACTAATAAAGACA
* * * * *
703238 ACGAGTTAGAAGGGTTG-ACTAAAGC-AAACTGATGAAGTTAACTAATTAAAAGGTTGGCCAGGG
130 ACAAGTTAAAAAGG-TGAACTAAAGCAAAACTGATAAAG-TAACCAATTAAAAGGTTGGCCAGGG
703301 CATAACTGAT
Statistics
Matches: 160, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
213 11 0.07
214 147 0.92
215 2 0.01
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.19
Consensus pattern (214 bp):
TAAAGTCAACCAATTAAAAGCTTGGCCAAGGAAAAACCAATAAAGCCAACGAGTTAAAAAGGTTG
ACCAGAGCCAAATCAATAAAGTCAACCAATTAAAAGGTTGCCTAGGGCAAAACTAATAAAGACAA
CAAGTTAAAAAGGTGAACTAAAGCAAAACTGATAAAGTAACCAATTAAAAGGTTGGCCAGGGTGA
AGCCAACAAAGCTAATCGA
Found at i:703397 original size:161 final size:161
Alignment explanation
Indices: 703111--703450 Score: 359
Period size: 161 Copynumber: 2.1 Consensus size: 161
703101 CTAATCGATA
*
703111 AAGTCAACCAATTAAAAGGTTGGCCAAGGTGAAACCGATAAAGCCAACGAGTTAAAAAGGTTGAC
1 AAGTCAACCAATTAAAAGGTTGGCCAAGGTGAAACCGATAAAGCCAAAGAGTTAAAAAGGTTGAC
* * ** *
703176 CAGGGCCAAACTAATAAAGTCAACTTATTAAAAGGTTGCCTAGGGCAAAACTGATAAAGCCAACG
66 AAAGGCCAAACTAATAAAGTCAACCAATTAAAAGGTTGCCTAGGGCAAAACTCATAAAGCCAACG
703241 AGTTAGAAGGGTTGACTAAAGCAAACTGATG
131 AGTTAGAAGGGTTGACTAAAGCAAACTGATG
* * *
703272 AAGTTAACTAATTAAAAGGTTGGCC-AGG-GCATAACTGATAAAGCCAATAG-GTTAAAAAGGTT
1 AAGTCAACCAATTAAAAGGTTGGCCAAGGTG-A-AACCGATAAAGCCAA-AGAGTTAAAAAGGTT
** * * *
703334 GACAAAGGTGAAATTGAA-AAAGTCAACCAATTGAAAGGTTGGCC-AGGGTAAAAC-CATTAAAG
63 GACAAAGGCCAAACT-AATAAAGTCAACCAATTAAAAGGTT-GCCTAGGGCAAAACTCA-TAAAG
* * * * * * * * *
703396 CCAACAAATTAAAAGGTTTGACCAAGGCAAAATCAATA
125 CCAACGAGTTAGAAGGGTTGACTAAAGCAAACT-GATG
*
703434 AAGTCAACCATTTAAAA
1 AAGTCAACCAATTAAAA
703451 AATGACATCT
Statistics
Matches: 146, Mismatches: 26, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
159 1 0.01
160 5 0.03
161 118 0.81
162 22 0.15
ACGTcount: A:0.44, C:0.15, G:0.21, T:0.20
Consensus pattern (161 bp):
AAGTCAACCAATTAAAAGGTTGGCCAAGGTGAAACCGATAAAGCCAAAGAGTTAAAAAGGTTGAC
AAAGGCCAAACTAATAAAGTCAACCAATTAAAAGGTTGCCTAGGGCAAAACTCATAAAGCCAACG
AGTTAGAAGGGTTGACTAAAGCAAACTGATG
Found at i:703427 original size:375 final size:376
Alignment explanation
Indices: 702733--703450 Score: 873
Period size: 375 Copynumber: 1.9 Consensus size: 376
702723 GGCAAAACCA
* * * * * * * * *
702733 ATAAAGTCAACTAGTTAAAAGGTTGGCTAGGGTGAAGCTAATAAAGCCAATGTATTAGAAGGGTT
1 ATAAAGTCAACCAATTAAAAGGTTGGCCAAGGTGAAACCAATAAAGCCAACGTATTAAAAAGGTT
*
702798 GACCAAGGCAAAATCGATAAAGTCAACCAATTAAAAGGTTAGCCAGGGCAAAACCGATAAAACCA
66 GACCAAGGCAAAATCAATAAAGTCAACCAATTAAAAGGTTAGCCAGGGCAAAACCGATAAAACCA
*
702863 ACAGGTTAGAAGGTTGACCAAGAAGAAACTGGTAAAGTCAACCAATTAAAAGCTTGGCCAGGGAA
131 ACAGGTTAGAAGGTTGACCAAGAAGAAACTGATAAAGTCAACCAATTAAAAGCTTGGCCAGGGAA
* * * * *
702928 AAACCAATGAAGCCAATGGGTTAAAAGGGTTGACCATAGCGAAATCGATAAAGTCAACCAATTAA
196 AAACCAATAAAGCCAATAGGTTAAAAAGGTTGACCAAAGCGAAATCGAAAAAGTCAACCAATTAA
* * * * * **
702993 AGGGTTGGCTAGGGTAAAACTAATAAAGACAACAAGTTAAAAAGGTGAACTAGGGCAAAATTGAT
261 AGGGTTGGCCAGGGTAAAACCAATAAAGACAACAAATTAAAAAGGTGAACCAAGGCAAAATCAAT
703058 AAAGT-AACCAATTAAAAGGTTGGCTAGGGTGAAGCCAACAAAGCTAATCG
326 AAAGTCAACCAATTAAAAGGTTGGCTAGGGTGAAGCCAACAAAGCTAATCG
*
703108 ATAAAGTCAACCAATTAAAAGGTTGGCCAAGGTGAAACCGATAAAGCCAACG-AGTTAAAAAGGT
1 ATAAAGTCAACCAATTAAAAGGTTGGCCAAGGTGAAACCAATAAAGCCAACGTA-TTAAAAAGGT
* * ** * *
703172 TGACCAGGGCCAAA-CTAATAAAGTCAACTTATTAAAAGGTT-GCCTAGGGCAAAACTGATAAAG
65 TGACCAAGGCAAAATC-AATAAAGTCAACCAATTAAAAGGTTAGCC-AGGGCAAAACCGATAAAA
* * * * *
703235 CCAAC-GAGTTAGAAGGGTTGA-CTA-AAGCAAACTGATGAAGTTAACTAATTAAAAGGTTGGCC
128 CCAACAG-GTTAGAA-GGTTGACCAAGAAG-AAACTGATAAAGTCAACCAATTAAAAGCTTGGCC
* * ** * *
703297 AGGGCATAACTGATAAAGCCAATAGGTTAAAAAGGTTGA-CAAAGGTGAAATTGAAAAAGTCAAC
190 AGGGAAAAACCAATAAAGCCAATAGGTTAAAAAGGTTGACCAAA-GCGAAATCGAAAAAGTCAAC
* *
703361 CAATTGAAA-GGTTGGCCAGGGTAAAACCATTAAAGCCAACAAATT-AAAAGGTTTG-ACCAAGG
254 CAATT-AAAGGGTTGGCCAGGGTAAAACCAATAAAGACAACAAATTAAAAAGG--TGAACCAAGG
*
703423 CAAAATCAATAAAGTCAACCATTTAAAA
316 CAAAATCAATAAAGTCAACCAATTAAAA
703451 AATGACATCT
Statistics
Matches: 288, Mismatches: 44, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
374 18 0.06
375 248 0.86
376 22 0.08
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (376 bp):
ATAAAGTCAACCAATTAAAAGGTTGGCCAAGGTGAAACCAATAAAGCCAACGTATTAAAAAGGTT
GACCAAGGCAAAATCAATAAAGTCAACCAATTAAAAGGTTAGCCAGGGCAAAACCGATAAAACCA
ACAGGTTAGAAGGTTGACCAAGAAGAAACTGATAAAGTCAACCAATTAAAAGCTTGGCCAGGGAA
AAACCAATAAAGCCAATAGGTTAAAAAGGTTGACCAAAGCGAAATCGAAAAAGTCAACCAATTAA
AGGGTTGGCCAGGGTAAAACCAATAAAGACAACAAATTAAAAAGGTGAACCAAGGCAAAATCAAT
AAAGTCAACCAATTAAAAGGTTGGCTAGGGTGAAGCCAACAAAGCTAATCG
Found at i:703640 original size:21 final size:22
Alignment explanation
Indices: 703614--703657 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
703604 CCATATTTGA
703614 TTCATTC-TTCATATTTCATTT
1 TTCATTCATTCATATTTCATTT
* *
703635 TTCATTCATTCATTTTTCCTTT
1 TTCATTCATTCATATTTCATTT
703657 T
1 T
703658 ATAGTATGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.16, C:0.20, G:0.00, T:0.64
Consensus pattern (22 bp):
TTCATTCATTCATATTTCATTT
Found at i:704112 original size:66 final size:66
Alignment explanation
Indices: 703992--704123 Score: 176
Period size: 66 Copynumber: 2.0 Consensus size: 66
703982 CATCAATACC
* * *** *
703992 ATCTAGTGGTTAAAGGAAAATGGTATGATTAGGAATGTGTGGGTGGGATGTCCTTG-TCTCAAAG
1 ATCTAATGGTTAAAGGAAAATAGTATGATTAGGAATGTGTGGGCAAGATCTCCTTGCTCT-AAAG
704056 AA
65 AA
* *
704058 ATCTAATGGTTGAAGGAAAATAGTATGATTGGGAATGTGTGGGCAAGATCTCCTTGCTCTAAAGA
1 ATCTAATGGTTAAAGGAAAATAGTATGATTAGGAATGTGTGGGCAAGATCTCCTTGCTCTAAAGA
704123 A
66 A
704124 CTTGGCTTAT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
66 54 0.95
67 3 0.05
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (66 bp):
ATCTAATGGTTAAAGGAAAATAGTATGATTAGGAATGTGTGGGCAAGATCTCCTTGCTCTAAAGA
A
Found at i:704850 original size:24 final size:22
Alignment explanation
Indices: 704811--704855 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 22
704801 TTTAATCAGC
*
704811 AAATTATAAAATACAAATGCAA
1 AAATTATAAAAGACAAATGCAA
704833 AAATTAGTAAAAAGACAAATGCA
1 AAATTA-T-AAAAGACAAATGCA
704856 TGCGAAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 6 0.30
23 1 0.05
24 13 0.65
ACGTcount: A:0.62, C:0.09, G:0.09, T:0.20
Consensus pattern (22 bp):
AAATTATAAAAGACAAATGCAA
Found at i:708436 original size:20 final size:19
Alignment explanation
Indices: 708411--708518 Score: 120
Period size: 20 Copynumber: 5.8 Consensus size: 19
708401 TTTTCACAAT
708411 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATT-TTCA
708431 TTGTATCGATACATTTTGCA
1 TTGTATCGATACATTTT-CA
708451 TTGTATCGAT--A----CA
1 TTGTATCGATACATTTTCA
*
708464 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATT-TTCA
708484 TTGTATCGATACATTTTACA
1 TTGTATCGATACATTTT-CA
*
708504 ATGTATCGATACATT
1 TTGTATCGATACATT
708519 CAGGCATTTT
Statistics
Matches: 77, Mismatches: 2, Indels: 18
0.79 0.02 0.19
Matches are distributed among these distances:
13 12 0.16
15 1 0.01
18 1 0.01
19 3 0.04
20 60 0.78
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.43
Consensus pattern (19 bp):
TTGTATCGATACATTTTCA
Found at i:708471 original size:33 final size:33
Alignment explanation
Indices: 708429--708498 Score: 115
Period size: 33 Copynumber: 2.1 Consensus size: 33
708419 ATACATTGTT
*
708429 CATTGTATCGATACATT-TTGCATTGTATCGATA
1 CATTGTATCGATACATTGCT-CATTGTATCGATA
708462 CATTGTATCGATACATTGCTCATTGTATCGATA
1 CATTGTATCGATACATTGCTCATTGTATCGATA
708495 CATT
1 CATT
708499 TTACAATGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
33 34 0.97
34 1 0.03
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41
Consensus pattern (33 bp):
CATTGTATCGATACATTGCTCATTGTATCGATA
Found at i:708491 original size:53 final size:53
Alignment explanation
Indices: 708411--708518 Score: 189
Period size: 53 Copynumber: 2.0 Consensus size: 53
708401 TTTTCACAAT
* * *
708411 TTGTATCGATACATTGTTCATTGTATCGATACATTTTGCATTGTATCGATACA
1 TTGTATCGATACATTGCTCATTGTATCGATACATTTTACAATGTATCGATACA
708464 TTGTATCGATACATTGCTCATTGTATCGATACATTTTACAATGTATCGATACA
1 TTGTATCGATACATTGCTCATTGTATCGATACATTTTACAATGTATCGATACA
708517 TT
1 TT
708519 CAGGCATTTT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.43
Consensus pattern (53 bp):
TTGTATCGATACATTGCTCATTGTATCGATACATTTTACAATGTATCGATACA
Found at i:708498 original size:13 final size:13
Alignment explanation
Indices: 708449--708479 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
708439 ATACATTTTG
708449 CATTGTATCGATA
1 CATTGTATCGATA
708462 CATTGTATCGATA
1 CATTGTATCGATA
708475 CATTG
1 CATTG
708480 CTCATTGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:709077 original size:24 final size:24
Alignment explanation
Indices: 709045--709102 Score: 116
Period size: 24 Copynumber: 2.4 Consensus size: 24
709035 ATTCCCGTAG
709045 CTCCAAAAACCACCACCAAAGAAC
1 CTCCAAAAACCACCACCAAAGAAC
709069 CTCCAAAAACCACCACCAAAGAAC
1 CTCCAAAAACCACCACCAAAGAAC
709093 CTCCAAAAAC
1 CTCCAAAAAC
709103 TTCATATTCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.50, C:0.41, G:0.03, T:0.05
Consensus pattern (24 bp):
CTCCAAAAACCACCACCAAAGAAC
Found at i:710918 original size:51 final size:50
Alignment explanation
Indices: 710830--711001 Score: 177
Period size: 51 Copynumber: 3.4 Consensus size: 50
710820 ATTTCTAGAT
* * **
710830 TTTTCAC-CTCGGGGATACTCCAA-TCCCGGTTCCATTTCCAAAACATCAA
1 TTTTCACAATCGGGGATACTCCAACT-CCGATTTTATTTCCAAAACATCAA
** * * *
710879 TTTTTCTTAATCGGGGATACTCCAACTCCGATTTTATTTCTAAAGCATCGA
1 -TTTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACATCAA
** * *
710930 TTACCGCAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACTAAA
1 TTTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACA-TCAA
*
710981 TTTTCACAATTGGGGATACTC
1 TTTTCACAATCGGGGATACTC
711002 TAACCCCATT
Statistics
Matches: 98, Mismatches: 21, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
50 45 0.46
51 52 0.53
52 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (50 bp):
TTTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACATCAA
Found at i:711259 original size:51 final size:51
Alignment explanation
Indices: 711159--711272 Score: 129
Period size: 51 Copynumber: 2.2 Consensus size: 51
711149 TTTTTCGAGG
* * * * *
711159 GGATACTTTAACCCCAATTTTATTTCTAAAATACAAATTTTTCACAATCGA
1 GGATACTTCAACTCCGATTTTATTTCCAAAATACAAATTTCTCACAATCGA
* *** * *
711210 GGCTACTTCAACTCCGATTTTATTTCCAAAATATTGATTTCTCATAATCGG
1 GGATACTTCAACTCCGATTTTATTTCCAAAATACAAATTTCTCACAATCGA
711261 GGATACTTCAAC
1 GGATACTTCAAC
711273 CTCGGCCTTA
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.37
Consensus pattern (51 bp):
GGATACTTCAACTCCGATTTTATTTCCAAAATACAAATTTCTCACAATCGA
Found at i:716047 original size:26 final size:28
Alignment explanation
Indices: 716009--716061 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
715999 AAAATATTTC
716009 TTTC-AAAAAAA-ATCTCTCCCTTTTTT
1 TTTCAAAAAAAATATCTCTCCCTTTTTT
*
716035 TTTCAAAATAAATATCTCTCCCTTTTT
1 TTTCAAAAAAAATATCTCTCCCTTTTT
716062 ATCAAATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 4 0.17
27 6 0.25
28 14 0.58
ACGTcount: A:0.30, C:0.23, G:0.00, T:0.47
Consensus pattern (28 bp):
TTTCAAAAAAAATATCTCTCCCTTTTTT
Found at i:716066 original size:26 final size:25
Alignment explanation
Indices: 716011--716067 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 25
716001 AATATTTCTT
*
716011 TCAAAAAAAATCTCTCCCTTTTTTTT
1 TCAAAAAAAATCTCTCCC-TTTTTTA
716037 TCAAAATAAATATCTCTCCC-TTTTTA
1 TCAAAA-AAA-ATCTCTCCCTTTTTTA
716063 TCAAA
1 TCAAA
716068 TTTATTTTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 16 0.57
27 3 0.11
28 9 0.32
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (25 bp):
TCAAAAAAAATCTCTCCCTTTTTTA
Found at i:717939 original size:33 final size:33
Alignment explanation
Indices: 717901--717967 Score: 93
Period size: 33 Copynumber: 2.0 Consensus size: 33
717891 CAAATAGTAC
717901 CCATGTATCGATAC-AACGAACT-CAGTATCGATA
1 CCATGTATCGATACTAA-GAA-TGCAGTATCGATA
*
717934 CCATGTATTGATACTAAGAATGCAGTATCGATA
1 CCATGTATCGATACTAAGAATGCAGTATCGATA
717967 C
1 C
717968 ATCTGGGTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
32 1 0.03
33 28 0.90
34 2 0.06
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (33 bp):
CCATGTATCGATACTAAGAATGCAGTATCGATA
Found at i:725316 original size:19 final size:19
Alignment explanation
Indices: 725292--725345 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
725282 ACTGCCAGTT
725292 TCATGTATCGATACAATA-A
1 TCATGTATCGATACAA-ACA
725311 TCATGTATCGATACAAAGCA
1 TCATGTATCGATACAAA-CA
*
725331 TAATGTATCGATACA
1 TCATGTATCGATACA
725346 TCTGGATATG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
18 1 0.03
19 16 0.50
20 15 0.47
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.30
Consensus pattern (19 bp):
TCATGTATCGATACAAACA
Found at i:725338 original size:20 final size:19
Alignment explanation
Indices: 725294--725345 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
725284 TGCCAGTTTC
*
725294 ATGTATCGATACAATAATC
1 ATGTATCGATACAATAATA
725313 ATGTATCGATACAA-AGCATA
1 ATGTATCGATACAATA--ATA
725333 ATGTATCGATACA
1 ATGTATCGATACA
725346 TCTGGATATG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 1 0.03
19 14 0.47
20 15 0.50
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.29
Consensus pattern (19 bp):
ATGTATCGATACAATAATA
Found at i:727440 original size:201 final size:199
Alignment explanation
Indices: 727086--727489 Score: 772
Period size: 201 Copynumber: 2.0 Consensus size: 199
727076 TTCTCATTCT
727086 ATCTTTTTTAGGTTCCCAAATGAAAATGACATGAATGATTTTGTTAAGGTTCCAAAAATCAATTT
1 ATCTTTTTTAGGTTCCCAAATGAAAATGACATGAATGATTTTGTTAAGGTTCCAAAAATCAATTT
*
727151 TGAGCAATCGGGCCATGTAAGTGAAGTCGATTCCGAGATGGATTCGAAAGATATTATCCCTCCTG
66 TGAGCAATCGGGCCATGTAAGTGAAGTCGATTCCGAGATGGATTCGAAAGATATCATCCCTCCTG
727216 ATCTGTTAAGATTGATTGAGTAAGAAGAAAGACAAATTTTGCCCCATGAAAAGTCGATTGAGATT
131 ATCTGTTAAGATTGATTGAGTAAGAAGAAAGACAAATTTTGCCCCATGAAAAGTCGATTGAGATT
727281 ATAA
196 ATAA
727285 ATCTTTTGTTAAGGTTCCCAAATGAAAATGACATGAATGATTTTGTTAAGGTTCCAAAAATCAAT
1 ATCTTTT-TT-AGGTTCCCAAATGAAAATGACATGAATGATTTTGTTAAGGTTCCAAAAATCAAT
727350 TTTGAGCAATCGGGCCATGTAAGTGAAGTCGATTCCGAGATGGATTCGAAAGATATCATCCCTCC
64 TTTGAGCAATCGGGCCATGTAAGTGAAGTCGATTCCGAGATGGATTCGAAAGATATCATCCCTCC
*
727415 TGATCTGTTAAGATTGATTGAGTAAGAAGAAAGACAAATTTTTCCCCATGAAAAGTCGATTGAGA
129 TGATCTGTTAAGATTGATTGAGTAAGAAGAAAGACAAATTTTGCCCCATGAAAAGTCGATTGAGA
727480 TTATAA
194 TTATAA
727486 ATCT
1 ATCT
727490 AGGACTAAAG
Statistics
Matches: 201, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
199 7 0.03
200 2 0.01
201 192 0.96
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (199 bp):
ATCTTTTTTAGGTTCCCAAATGAAAATGACATGAATGATTTTGTTAAGGTTCCAAAAATCAATTT
TGAGCAATCGGGCCATGTAAGTGAAGTCGATTCCGAGATGGATTCGAAAGATATCATCCCTCCTG
ATCTGTTAAGATTGATTGAGTAAGAAGAAAGACAAATTTTGCCCCATGAAAAGTCGATTGAGATT
ATAA
Found at i:731305 original size:13 final size:13
Alignment explanation
Indices: 731287--731314 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
731277 ATACAAAGAT
731287 CAATGTATCGATA
1 CAATGTATCGATA
731300 CAATGTATCGATA
1 CAATGTATCGATA
731313 CA
1 CA
731315 TTTGAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:731391 original size:19 final size:21
Alignment explanation
Indices: 731367--731419 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
731357 AGCGATACAT
731367 TGTATCGATACAA-CACT-TA
1 TGTATCGATACAATCACTGTA
* * *
731386 TGTATCGATATAATTACTGTC
1 TGTATCGATACAATCACTGTA
731407 TGTATCGATACAA
1 TGTATCGATACAA
731420 ATTGTTGAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 12 0.43
20 3 0.11
21 13 0.46
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (21 bp):
TGTATCGATACAATCACTGTA
Found at i:735616 original size:35 final size:35
Alignment explanation
Indices: 735564--735641 Score: 131
Period size: 35 Copynumber: 2.3 Consensus size: 35
735554 TCATGCTTTC
735564 CTTCATTT-CCTTTGTCCTCAAAGAGTAGGAAGCA
1 CTTCATTTCCCTTTGTCCTCAAAGAGTAGGAAGCA
* *
735598 CTTCTTTTCCCTTTGTCCTCAAAGAGTAGGATGCA
1 CTTCATTTCCCTTTGTCCTCAAAGAGTAGGAAGCA
735633 CTTCATTTC
1 CTTCATTTC
735642 TTTTTTTTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
34 7 0.17
35 33 0.82
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (35 bp):
CTTCATTTCCCTTTGTCCTCAAAGAGTAGGAAGCA
Found at i:735665 original size:77 final size:76
Alignment explanation
Indices: 735569--735738 Score: 211
Period size: 77 Copynumber: 2.2 Consensus size: 76
735559 CTTTCCTTCA
* **
735569 TTTCCTTTGTCCTCAAAGAGTAGGAAGCACTTCTTTTCCCTTTGT-CCTCAAAGAGTAGGATGCA
1 TTTCCTTTGTCCTCAAAGAGTAGGAAGCACTT-TTTTCCCTTTATCCCT-AAAGAACAGGATGCA
735633 CTTCATTTCTTT-TT
64 -TTCATTT-TTTCTT
* * *
735647 TTT-CTTTGTCCTCAAAGAGTAGGATGTACTTTTTTCCCTTTATCCCTAAGGAACAGGATGCATT
1 TTTCCTTTGTCCTCAAAGAGTAGGAAGCACTTTTTTCCCTTTATCCCTAAAGAACAGGATGCATT
*
735711 CCTTTTTTCCTT
66 CATTTTTT-CTT
735723 TTTCCTTTGTCCTCAA
1 TTTCCTTTGTCCTCAA
735739 GGAGCATGAC
Statistics
Matches: 81, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
74 3 0.04
75 6 0.07
76 28 0.35
77 41 0.51
78 3 0.04
ACGTcount: A:0.19, C:0.24, G:0.14, T:0.43
Consensus pattern (76 bp):
TTTCCTTTGTCCTCAAAGAGTAGGAAGCACTTTTTTCCCTTTATCCCTAAAGAACAGGATGCATT
CATTTTTTCTT
Found at i:735920 original size:35 final size:34
Alignment explanation
Indices: 735871--735943 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 34
735861 CTTTATATTA
* *
735871 TTTTCCTTTGTCCTCAAAAAGTAGGGCGCACTT-C
1 TTTTCCTTTATCCTCAAAAAGCAGGGCGCA-TTCC
*
735905 TTTTCCCTTTATCCTCAAAGAGCAGGGCGCATTCC
1 TTTT-CCTTTATCCTCAAAAAGCAGGGCGCATTCC
735940 TTTT
1 TTTT
735944 TCTCTTTTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
34 6 0.18
35 28 0.82
ACGTcount: A:0.19, C:0.27, G:0.16, T:0.37
Consensus pattern (34 bp):
TTTTCCTTTATCCTCAAAAAGCAGGGCGCATTCC
Found at i:736190 original size:34 final size:32
Alignment explanation
Indices: 736143--736235 Score: 96
Period size: 33 Copynumber: 2.8 Consensus size: 32
736133 TTCATTCTCC
*
736143 TTTTTTCTTTGTCCTCGAAGAGCAGAATGCGCT
1 TTTTTTCTTTGTCCTC-AAGAGCAGAATGCACT
* * * *
736176 TTTTTTCCTCTGTCCTCAAAAGTAGGATGCACT
1 TTTTTT-CTTTGTCCTCAAGAGCAGAATGCACT
736209 TCATTTTTCTTTGTCCTCAAAGAGCAG
1 T--TTTTTCTTTGTCCTC-AAGAGCAG
736236 CACTGCACGT
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
33 19 0.40
34 18 0.38
35 11 0.23
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (32 bp):
TTTTTTCTTTGTCCTCAAGAGCAGAATGCACT
Found at i:736197 original size:153 final size:154
Alignment explanation
Indices: 735871--736231 Score: 394
Period size: 153 Copynumber: 2.3 Consensus size: 154
735861 CTTTATATTA
** * *
735871 TTTTCCTTTGTCCTCAAAAAGTAGGGCGCACTTCTTTTCCCTTTATCCTCAAAGAGCAGGGCGCA
1 TTTTCC-TTGTCCTC-AAAAGTAGGATGCACTTCTTTTCCCTTTATCCTCAAAGAACAGGACGCA
* * * *
735936 TTCCTTTTTCTCTTTTTCCTTTGTCCTCAAGGAGTAAGACCAATTTTATTCTCTATTTTCCTTCG
64 TTCCTTTTTCTCTTTTTCCTTTATCCTCAAAGAGCAAGACCAATTTCATTCTCTATTTTCCTTCG
* * *
736001 TCCTCGAAGAGCTGGACGTACTCCTT
129 TCCTCGAAGAGCTAGACATACGCCTT
* * * * *
736027 TTTT--TTGTCCTTAAAAAGTAGGATGCACTTTTTTTCCCTTTATCCTCAAGGAATAGGATGCAT
1 TTTTCCTTGTCC-TCAAAAGTAGGATGCACTTCTTTTCCCTTTATCCTCAAAGAACAGGACGCAT
* * * *
736090 TCCTTTTT-TCCTTTTTCCTTTATCCTCAAAGAGCAGGACCCATTTCATTCTCCT-TTTTTCTTT
65 TCCTTTTTCT-CTTTTTCCTTTATCCTCAAAGAGCAAGACCAATTTCATTCT-CTATTTTCCTTC
* *
736153 GTCCTCGAAGAGC-AGA-ATGCGCTTT
128 GTCCTCGAAGAGCTAGACATACGCCTT
* *
736178 TTTTCCTCTGTCCTCAAAAGTAGGATGCACTTCATTTT-TCTTTGTCCTCAAAGA
1 TTTTCCT-TGTCCTCAAAAGTAGGATGCACTTC-TTTTCCCTTTATCCTCAAAGA
736232 GCAGCACTGC
Statistics
Matches: 171, Mismatches: 27, Indels: 17
0.80 0.13 0.08
Matches are distributed among these distances:
151 9 0.05
152 3 0.02
153 143 0.84
154 12 0.07
156 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.41
Consensus pattern (154 bp):
TTTTCCTTGTCCTCAAAAGTAGGATGCACTTCTTTTCCCTTTATCCTCAAAGAACAGGACGCATT
CCTTTTTCTCTTTTTCCTTTATCCTCAAAGAGCAAGACCAATTTCATTCTCTATTTTCCTTCGTC
CTCGAAGAGCTAGACATACGCCTT
Found at i:736341 original size:7 final size:7
Alignment explanation
Indices: 736329--736371 Score: 77
Period size: 7 Copynumber: 6.1 Consensus size: 7
736319 GCATTGTTTT
736329 TTTTTCC
1 TTTTTCC
736336 TTTTTCC
1 TTTTTCC
736343 TTTTTCC
1 TTTTTCC
736350 TTTTTCC
1 TTTTTCC
736357 TTTTTCC
1 TTTTTCC
*
736364 TTTGTCC
1 TTTTTCC
736371 T
1 T
736372 CAAGGAGCAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.00, C:0.28, G:0.02, T:0.70
Consensus pattern (7 bp):
TTTTTCC
Found at i:736442 original size:34 final size:35
Alignment explanation
Indices: 736399--736476 Score: 95
Period size: 34 Copynumber: 2.2 Consensus size: 35
736389 TTCATTCTCT
* * * *
736399 TTTTTCTTTATCCTCGAAGAGTAGGA-CGTACTCA
1 TTTTCCTTTATCCTCAAAGAGCAGGAGCCTACTCA
*
736433 TTTTCCTTTATCCTCAAAGAGCAGGATGCCTACTCC
1 TTTTCCTTTATCCTCAAAGAGCAGGA-GCCTACTCA
736469 TTTTCCTT
1 TTTTCCTT
736477 CCTCTTTTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 23 0.62
36 14 0.38
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.40
Consensus pattern (35 bp):
TTTTCCTTTATCCTCAAAGAGCAGGAGCCTACTCA
Found at i:736745 original size:62 final size:62
Alignment explanation
Indices: 736609--736760 Score: 187
Period size: 62 Copynumber: 2.5 Consensus size: 62
736599 GCCTTAGAAT
* * *
736609 GTCAAAGCCCATATGAGTTGGTGGCACCCTAGTCAAAGCCCGCACAAGCTGGCAGCATCTAA
1 GTCAAAGCCCACATGAGTTGGTGGCACCCTAATCAAAGCCCACACAAGCTGGCAGCATCTAA
** * * * *
736671 GTCAAAAACCACATGGGTTGGTGGCACCCTAATCAAAGCTCACACAAGCTGGCGGCATTTAA
1 GTCAAAGCCCACATGAGTTGGTGGCACCCTAATCAAAGCCCACACAAGCTGGCAGCATCTAA
* ** *
736733 GTTAAAGCCCACAAAAGTTGGAGGCACC
1 GTCAAAGCCCACATGAGTTGGTGGCACC
736761 TAAGTTCAAG
Statistics
Matches: 74, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
62 74 1.00
ACGTcount: A:0.32, C:0.27, G:0.24, T:0.18
Consensus pattern (62 bp):
GTCAAAGCCCACATGAGTTGGTGGCACCCTAATCAAAGCCCACACAAGCTGGCAGCATCTAA
Found at i:736914 original size:68 final size:68
Alignment explanation
Indices: 736820--736960 Score: 169
Period size: 68 Copynumber: 2.1 Consensus size: 68
736810 GCCTTAGGAT
* * * * *
736820 GTCAAAGCCCACACGAGTTGGTGGCACCCT-AGTTAAAGCCCACACAACCTGGTGGCACCTAAG-
1 GTCAAAGCCCACACAAGCTAGTGGCA-CCTGAGTCAAAGCCCACACAACCTGGTGACACCTAAGT
736883 TCAGA
65 TC-GA
* * * *
736888 GTCAAAGCCCGCACAAGCTAGTGGCACTTGAGTCAAAGCCTACACAAGCTGGTGACACCTAAGTT
1 GTCAAAGCCCACACAAGCTAGTGGCACCTGAGTCAAAGCCCACACAACCTGGTGACACCTAAGTT
736953 CGA
66 CGA
736956 GTCAA
1 GTCAA
736961 GTCCACATTA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
67 2 0.03
68 58 0.94
69 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.23, T:0.17
Consensus pattern (68 bp):
GTCAAAGCCCACACAAGCTAGTGGCACCTGAGTCAAAGCCCACACAACCTGGTGACACCTAAGTT
CGA
Found at i:736958 original size:37 final size:37
Alignment explanation
Indices: 736854--736960 Score: 111
Period size: 37 Copynumber: 3.1 Consensus size: 37
736844 CACCCTAGTT
*
736854 AAAGCCCACACAACCTGGTGGCACCTAAG-TCAGAGTC
1 AAAGCCCACACAAGCTGGTGGCACCTAAGTTC-GAGTC
* *
736891 AAAGCCCGCACAAGCTAGTGGCA-C----TT-GAGTC
1 AAAGCCCACACAAGCTGGTGGCACCTAAGTTCGAGTC
* *
736922 AAAGCCTACACAAGCTGGTGACACCTAAGTTCGAGTC
1 AAAGCCCACACAAGCTGGTGGCACCTAAGTTCGAGTC
736959 AA
1 AA
736961 GTCCACATTA
Statistics
Matches: 56, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
31 24 0.43
32 1 0.02
33 1 0.02
36 3 0.05
37 27 0.48
ACGTcount: A:0.33, C:0.29, G:0.22, T:0.16
Consensus pattern (37 bp):
AAAGCCCACACAAGCTGGTGGCACCTAAGTTCGAGTC
Found at i:741256 original size:28 final size:27
Alignment explanation
Indices: 741225--741322 Score: 81
Period size: 28 Copynumber: 3.5 Consensus size: 27
741215 ATGGCATGCC
*
741225 TTTTAAGCCCACAACTTCATGCCACCCT
1 TTTTAAGCCCACAACTTCGTG-CACCCT
* * *
741253 TTTTAAAGTCCATAATTTCGTAGCACCCT
1 TTTT-AAGCCCACAACTTCGT-GCACCCT
* * *
741282 TTTTAA-CTCTACAACTTTGTGGCACCTT
1 TTTTAAGC-CCACAACTTCGT-GCACCCT
741310 TTTTAAGCCCACA
1 TTTTAAGCCCACA
741323 CAAGTTGGTG
Statistics
Matches: 54, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
28 30 0.56
29 23 0.43
30 1 0.02
ACGTcount: A:0.26, C:0.30, G:0.09, T:0.36
Consensus pattern (27 bp):
TTTTAAGCCCACAACTTCGTGCACCCT
Found at i:741495 original size:32 final size:32
Alignment explanation
Indices: 741455--741523 Score: 95
Period size: 33 Copynumber: 2.2 Consensus size: 32
741445 ACTTTCCTTT
*
741455 CTTTTC-AAAGCCCAGACAAGTCGGTGGCAACC
1 CTTTTCAAAAGCCCACACAAGTCGGTGGC-ACC
* *
741487 CTTTTCAAAAGCCTACACAAGTTGGTGGCACC
1 CTTTTCAAAAGCCCACACAAGTCGGTGGCACC
741519 CTTTT
1 CTTTT
741524 TTTTCCTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 14 0.42
33 19 0.58
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (32 bp):
CTTTTCAAAAGCCCACACAAGTCGGTGGCACC
Found at i:741533 original size:74 final size:74
Alignment explanation
Indices: 741455--741602 Score: 183
Period size: 74 Copynumber: 2.0 Consensus size: 74
741445 ACTTTCCTTT
* *
741455 CTTTTCAAAGCCCAGACAAGTCGGTGGCAACCCTTTTCAAAAGCCTA-CACAAGTTGGTGGCACC
1 CTTTTCAAAGCCCACACAAGTCGGTAGCAACCCTTTTCAAAAG--TACCACAAGTTGGTGGCACC
741519 CTTT-TTTTTC
64 CTTTCTTTTTC
* * * * * *
741529 CTTTTCAAAGCTCACACAAGTTGGTAGTAACCTTTTTTAAAAGTACGCACAAGTTGGTGGCACTC
1 CTTTTCAAAGCCCACACAAGTCGGTAGCAACCCTTTTCAAAAGTAC-CACAAGTTGGTGGCACCC
741594 TTTCTTTTT
65 TTTCTTTTT
741603 AAAGCTCACA
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
72 2 0.03
74 56 0.89
75 5 0.08
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (74 bp):
CTTTTCAAAGCCCACACAAGTCGGTAGCAACCCTTTTCAAAAGTACCACAAGTTGGTGGCACCCT
TTCTTTTTC
Found at i:741566 original size:42 final size:42
Alignment explanation
Indices: 741486--741566 Score: 105
Period size: 41 Copynumber: 2.0 Consensus size: 42
741476 CGGTGGCAAC
*
741486 CCTTTTCAAAAGCCTACACAAGTTGGTGGCACCCTTTTTTTT
1 CCTTTTCAAAAGCCTACACAAGTTGGTGGAACCCTTTTTTTT
*
741528 CCTTTTC-AAAG-CTCACACAAGTTGGTAGTAA-CCTTTTTT
1 CCTTTTCAAAAGCCT-ACACAAGTTGGT-GGAACCCTTTTTT
741567 AAAAGTACGC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
40 2 0.06
41 24 0.69
42 9 0.26
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (42 bp):
CCTTTTCAAAAGCCTACACAAGTTGGTGGAACCCTTTTTTTT
Found at i:741660 original size:38 final size:38
Alignment explanation
Indices: 741494--742427 Score: 354
Period size: 36 Copynumber: 24.5 Consensus size: 38
741484 ACCCTTTTCA
* * *
741494 AAAGCCTACACAAGTTGGTGGCACCCTTTTTTTTCCTTTTC
1 AAAGCCCACACAAGTTGGTGGCACCC--CTTTTT-CTTTTT
* * * * *
741535 AAAGCTCACACAAGTTGGTAGTA-ACC---TT-TTTTA
1 AAAGCCCACACAAGTTGGTGGCACCCCTTTTTCTTTTT
** * *
741568 AAAGTACGCACAAGTTGGTGGCA---CTCTTTCTTTTT
1 AAAGCCCACACAAGTTGGTGGCACCCCTTTTTCTTTTT
* * **
741603 AAAGCTCACATAAACTGGTGGCACCCCTTTTTCTTCTTT
1 AAAGCCCACACAAGTTGGTGGCACCCCTTTTTCTT-TTT
* **
741642 -AAGCCCACAAAAGTTGGT-G-ATACCTTTTTCTTTTT
1 AAAGCCCACACAAGTTGGTGGCACCCCTTTTTCTTTTT
* * * *
741677 AAAGCCCGCACAAGTTGGCGG--CTCCTTTTTCCTTTTC
1 AAAGCCCACACAAGTTGGTGGCACCCCTTTTT-CTTTTT
*
741714 AAAGCTCACACAAGTTGGTGGCACCCC--TTTCTTTTT
1 AAAGCCCACACAAGTTGGTGGCACCCCTTTTTCTTTTT
** * * *** **
741750 AAAGCCTGCATAGGTTGGCAACA-TTCTTTTTCTTCTTT
1 AAAGCCCACACAAGTTGGTGGCACCCCTTTTTCTT-TTT
* *
741788 -AAGCCCACACAAGTTGGTGGCACATTTTTTCTTTTTCTCTTTTT
1 AAAGCCCACACAAGTTGGTGGCAC------CCCTTTT-TCTTTTT
* * * * *
741832 AAAGCTCATACAAGTTAGTGGTA-CCTTTTTTCCTTCTTT
1 AAAGCCCACACAAGTTGGTGGCACCCCTTTTT-CTT-TTT
* * * *
741871 -AAGCCCACACAAATTAGTGGCA--CCTCTTTCTTTTC
1 AAAGCCCACACAAGTTGGTGGCACCCCTTTTTCTTTTT
* * *
741906 AAAGGCCACACAAATTGGTGGCA-CCTTTTTTCCTTTTT
1 AAAGCCCACACAAGTTGGTGGCACCCCTTTTT-CTTTTT
* ** * * *
741944 TAAGCCCCACACAAGTTAATAGCA--CCTCTTTCTTTTC
1 AAAG-CCCACACAAGTTGGTGGCACCCCTTTTTCTTTTT
* * *
741981 AAAGCCCACACAAATTGGTGTCACCTTTTTACTTTTTCCTTTTTT
1 AAAGCCCACACAAGTTGGTGGCACC-----CCTTTTT-C-TTTTT
* * *
742026 AAAGCCCATACAAGTTGGTGACACCCCTTTCTTTTTTCATTTTC
1 AAAGCCCACACAAGTTGGTGGCA-CCC---C-TTTTTC-TTTTT
*
742070 AAAGCCCACACAGGTTGGTGGCA-CCC-TTTTCTTTTT
1 AAAGCCCACACAAGTTGGTGGCACCCCTTTTTCTTTTT
*
742106 AAAGCCCACACAAGTTGGTGGTACCCCGTTTTTTTCTTTTT
1 AAAGCCCACACAAGTTGGTGGCACCCC---TTTTTCTTTTT
* ** *
742147 CAAAGCCCACACAGGTTAATGGTACCCC-TTTTCTTTTT
1 -AAAGCCCACACAAGTTGGTGGCACCCCTTTTTCTTTTT
* *
742185 AAAGCCCACATAAGTTGGTGGCAACCC-TTTTC-----
1 AAAGCCCACACAAGTTGGTGGCACCCCTTTTTCTTTTT
* * ** *
742217 AAAGCCCACACAAGTCGATAGTAACCCC-TTTTC----A
1 AAAGCCCACACAAGTTGGT-GGCACCCCTTTTTCTTTTT
* * * * *
742251 AAAGCTCGCACAAGTAGGTGGCAACCATTTTCTTTTTTTTCCTTTTC
1 AAAGCCCACACAAGTTGGTGGC-ACC-----C--CTTTTT-CTTTTT
* * * *
742298 AAAGCCTACACAAGTTGATAGCA-CCATTTTTCCTTCTTT
1 AAAGCCCACACAAGTTGGTGGCACCCCTTTTT-CTT-TTT
* * * * *
742337 -AAGCCTACACAAGTTAGTGGCATCCC--TTCCTTTTC
1 AAAGCCCACACAAGTTGGTGGCACCCCTTTTTCTTTTT
*
742372 AAAGCCCACACAAGTTGGTGGTACCCC--TTTCTTTTT
1 AAAGCCCACACAAGTTGGTGGCACCCCTTTTTCTTTTT
*
742408 AAAGCCCCCACAAGTTGGTG
1 AAAGCCCACACAAGTTGGTG
742428 TTACCTCTTT
Statistics
Matches: 676, Mismatches: 147, Indels: 145
0.70 0.15 0.15
Matches are distributed among these distances:
31 1 0.00
32 16 0.02
33 33 0.05
34 20 0.03
35 31 0.05
36 166 0.25
37 104 0.15
38 103 0.15
39 29 0.04
40 2 0.00
41 29 0.04
42 30 0.04
43 6 0.01
44 35 0.05
45 52 0.08
46 3 0.00
47 16 0.02
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.36
Consensus pattern (38 bp):
AAAGCCCACACAAGTTGGTGGCACCCCTTTTTCTTTTT
Found at i:741767 original size:73 final size:73
Alignment explanation
Indices: 741576--741810 Score: 210
Period size: 73 Copynumber: 3.2 Consensus size: 73
741566 TAAAAGTACG
* * * * * *
741576 CACAAGTTGGTGGCA-CTCTTTCTTTTTAAAGCTCACATAAACTGGTGGC-AC-CCCTTTTTCTT
1 CACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCCGCA-CAA--GTTGGCAACATCCTTTTTCTT
*
741638 CTTTAAGCCCA
63 CTTAAAGCCCA
* ** ** **
741649 CAAAAGTTGGTGATACCTTTTTCTTTTTAAAGCCCGCACAAGTTGGCGGC-TCCTTTTTCCTT-T
1 CACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCCGCACAAGTTGGCAACATCCTTTTT-CTTCT
*
741712 TCAAAGCTCA
65 T-AAAGCCCA
* * * *
741722 CACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCTGCATAGGTTGGCAACATTCTTTTTCTTCTT
1 CACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCCGCACAAGTTGGCAACATCCTTTTTCTTCTT
*
741787 TAAGCCCA
66 AAAGCCCA
741795 CACAAGTTGGTGGCAC
1 CACAAGTTGGTGGCAC
741811 ATTTTTTCTT
Statistics
Matches: 131, Mismatches: 25, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
71 5 0.04
72 10 0.08
73 88 0.67
74 28 0.21
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (73 bp):
CACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCCGCACAAGTTGGCAACATCCTTTTTCTTCTT
AAAGCCCA
Found at i:741804 original size:37 final size:35
Alignment explanation
Indices: 741628--741823 Score: 131
Period size: 37 Copynumber: 5.4 Consensus size: 35
741618 TGGTGGCACC
* * *
741628 CCTTTTTCTTCTTTAAGCCCACAAAAGTTGGTGATA
1 CCTTTTTCTT-TTTAAGCCCACACAAGTTGGCGACA
* * *
741664 CCTTTTTCTTTTTAAAGCCCGCACAAGTTGGCGGCT
1 CCTTTTTCTTTTT-AAGCCCACACAAGTTGGCGACA
* * * *
741700 CCTTTTTCCTTTTCAAAGCTCACACAAGTTGGTGGCA
1 CCTTTTT-CTTTT-TAAGCCCACACAAGTTGGCGACA
** ** * * *
741737 CCCCTTTCTTTTTAAAGCCTGCATAGGTTGGCAACA
1 CCTTTTTCTTTTT-AAGCCCACACAAGTTGGCGACA
* * *
741773 TTCTTTTTCTTCTTTAAGCCCACACAAGTTGGTGGCA
1 -CCTTTTTCTT-TTTAAGCCCACACAAGTTGGCGACA
*
741810 CATTTTTTCTTTTT
1 C-CTTTTTCTTTTT
741824 CTCTTTTTAA
Statistics
Matches: 119, Mismatches: 34, Indels: 14
0.71 0.20 0.08
Matches are distributed among these distances:
35 3 0.03
36 55 0.46
37 58 0.49
38 3 0.03
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.40
Consensus pattern (35 bp):
CCTTTTTCTTTTTAAGCCCACACAAGTTGGCGACA
Found at i:741861 original size:45 final size:43
Alignment explanation
Indices: 741773--741893 Score: 126
Period size: 45 Copynumber: 2.9 Consensus size: 43
741763 GTTGGCAACA
*
741773 TTCTTTTTCTTCTTTAAGCCCACACAAGTTGGTGGCACATTTT
1 TTCTTTTTCTTCTTTAAGCCCACACAAGTTAGTGGCACATTTT
* * * * *
741816 TTCTTTTTCTCTTTTTAAAGCTCATACAAGTTAGTGGTACCTTTT
1 TTCTTTTTCT-TCTTT-AAGCCCACACAAGTTAGTGGCACATTTT
*
741861 TTC-----CTTCTTTAAGCCCACACAAATTAGTGGCAC
1 TTCTTTTTCTTCTTTAAGCCCACACAAGTTAGTGGCAC
741894 CTCTTTCTTT
Statistics
Matches: 65, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
38 19 0.29
39 4 0.06
40 2 0.03
43 10 0.15
44 4 0.06
45 26 0.40
ACGTcount: A:0.21, C:0.23, G:0.12, T:0.43
Consensus pattern (43 bp):
TTCTTTTTCTTCTTTAAGCCCACACAAGTTAGTGGCACATTTT
Found at i:742059 original size:81 final size:74
Alignment explanation
Indices: 741825--742121 Score: 258
Period size: 75 Copynumber: 3.8 Consensus size: 74
741815 TTTCTTTTTC
* * * * * * * *
741825 TCTTTTTAAAGCTCATACAAGTTAGTGGTACCTTTTTTCCTTCTTTAAGCCCACACAAATTAGTG
1 TCTTTTCAAAGCCCACACAAATTGGTGGCACCTTTTTTCCTTTTTTAAGCCCACACAAGTTAGTG
*
741890 GCACCTCTT
66 ACACCTCTT
* *
741899 TCTTTTCAAAGGCCACACAAATTGGTGGCACCTTTTTTCCTTTTTTAAGCCCCACACAAGTTAAT
1 TCTTTTCAAAGCCCACACAAATTGGTGGCACCTTTTTTCCTTTTTTAAG-CCCACACAAGTTAGT
741964 -AGCACCTCTT
65 GA-CACCTCTT
* *
741974 TCTTTTCAAAGCCCACACAAATTGGTGTCACCTTTTTACTTTTTCCTTTTTTAAAGCCCATACAA
1 TCTTTTCAAAGCCCACACAAATTGGTGGCACC----T--TTTTTCCTTTTTT-AAGCCCACACAA
*
742039 GTTGGTGACACCCCTTTCTTTTT
59 GTTAGTGACA--CC--TC---TT
** * *
742062 TCATTTTCAAAGCCCACACAGGTTGGTGGCACC-CTTTT-CTTTTTAAAGCCCACACAAGTT
1 TC-TTTTCAAAGCCCACACAAATTGGTGGCACCTTTTTTCCTTTTTTAAGCCCACACAAGTT
742122 GGTGGTACCC
Statistics
Matches: 183, Mismatches: 22, Indels: 30
0.78 0.09 0.13
Matches are distributed among these distances:
74 41 0.22
75 51 0.28
79 1 0.01
80 14 0.08
81 33 0.18
82 8 0.04
83 2 0.01
85 2 0.01
88 4 0.02
89 27 0.15
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.37
Consensus pattern (74 bp):
TCTTTTCAAAGCCCACACAAATTGGTGGCACCTTTTTTCCTTTTTTAAGCCCACACAAGTTAGTG
ACACCTCTT
Found at i:742075 original size:44 final size:43
Alignment explanation
Indices: 741972--742184 Score: 162
Period size: 44 Copynumber: 5.0 Consensus size: 43
741962 ATAGCACCTC
* * *
741972 TTTCTTTTCAAAGCCCACACAAATTGGTGTCACCTTTTTACTTT
1 TTTCTTTTCAAAGCCCACACAAGTTGGTGACACCCTTTT-CTTT
* * * *
742016 TTCCTTTTTTAAAGCCCATACAAGTTGGTGACACCCCTTTCTTT
1 TTTC-TTTTCAAAGCCCACACAAGTTGGTGACACCCTTTTCTTT
* *
742060 TTTCATTTTCAAAGCCCACACAGGTTGGTGGCACCCTTTTC---
1 TTTC-TTTTCAAAGCCCACACAAGTTGGTGACACCCTTTTCTTT
*
742101 --T-TTTT-AAAGCCCACACAAGTTGGTGGTAC-CCCGTTT-TTT
1 TTTCTTTTCAAAGCCCACACAAGTTGGT-G-ACACCCTTTTCTTT
* *
742140 TCT-TTTTCAAAGCCCACACAGGTTAATGGT-AC-CCCTTTTCTTT
1 TTTCTTTTCAAAGCCCACACAAG-T--TGGTGACACCCTTTTCTTT
742183 TT
1 TT
742185 AAAGCCCACA
Statistics
Matches: 136, Mismatches: 20, Indels: 27
0.74 0.11 0.15
Matches are distributed among these distances:
36 18 0.13
37 11 0.08
38 1 0.01
39 1 0.01
41 5 0.04
42 21 0.15
43 5 0.04
44 41 0.30
45 33 0.24
ACGTcount: A:0.21, C:0.26, G:0.13, T:0.40
Consensus pattern (43 bp):
TTTCTTTTCAAAGCCCACACAAGTTGGTGACACCCTTTTCTTT
Found at i:742103 original size:200 final size:197
Alignment explanation
Indices: 741788--742207 Score: 476
Period size: 194 Copynumber: 2.1 Consensus size: 197
741778 TTTCTTCTTT
* * *
741788 AAGCCCACACAAGTTGGTGGCACATTTTTTCTTTTTCTCTTTTTAAAGCTCATACAAGTTAGTGG
1 AAGCCCACACAAGTTGGTGGCACATTTTTACTTTTTCTCTTTTTAAAGCCCATACAAGTTAGTGA
* *
741853 TACCTTTTTTCCTTCTTTAAGCCCACACAAATTAGTGGCACCTCTTTCTTTTCAAAGGCCACACA
66 CACCTTTTTTCCTTCTTTAAGCCCACACAAATTAGTGGCACCTCTTTCTTTTCAAAGCCCACACA
* *
741918 AATTGGTGG-CACC-TTTTTTCCTTTTT-TAAGCCCCACACAAGTTAATAGCACCTC-TTTCTTT
131 AATTGGTGGACACCGTTTTTTCCTTTTTCAAAG-CCCACACAAGTTAATAGCACCCCTTTTCTTT
741979 TCA
195 TCA
* * * *
741982 AAGCCCACACAAATTGGTGTCACCTTTTTACTTTTTC-CTTTTTTAAAGCCCATACAAGTTGGTG
1 AAGCCCACACAAGTTGGTGGCACATTTTTACTTTTTCTC-TTTTTAAAGCCCATACAAGTTAGTG
* ** * *
742046 ACACCCCTTTCTTT-TTTCATTTTCAAAGCCCACACAGGTTGGTGGCACC-CTTTTCTTTTTAAA
65 ACA--CCTTT-TTTCCTTC--TTT--AAGCCCACACAAATTAGTGGCACCTC-TTTCTTTTCAAA
* * * * * *
742109 GCCCACACAAGTTGGTGGTACCCCGTTTTTTTCTTTTTCAAAGCCCACACAGGTTAATGGTACCC
122 GCCCACACAAATTGGTGG-ACACCGTTTTTTCCTTTTTCAAAGCCCACACAAGTTAATAGCACCC
*
742174 CTTTTCTTTTTA
186 CTTTTCTTTTCA
*
742186 AAGCCCACATAAGTTGGTGGCA
1 AAGCCCACACAAGTTGGTGGCA
742208 ACCCTTTTCA
Statistics
Matches: 186, Mismatches: 26, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
193 1 0.01
194 57 0.31
196 8 0.04
197 3 0.02
198 3 0.02
199 1 0.01
200 48 0.26
202 3 0.02
203 31 0.17
204 31 0.17
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (197 bp):
AAGCCCACACAAGTTGGTGGCACATTTTTACTTTTTCTCTTTTTAAAGCCCATACAAGTTAGTGA
CACCTTTTTTCCTTCTTTAAGCCCACACAAATTAGTGGCACCTCTTTCTTTTCAAAGCCCACACA
AATTGGTGGACACCGTTTTTTCCTTTTTCAAAGCCCACACAAGTTAATAGCACCCCTTTTCTTTT
CA
Found at i:742122 original size:80 final size:80
Alignment explanation
Indices: 742021--742215 Score: 277
Period size: 79 Copynumber: 2.5 Consensus size: 80
742011 ACTTTTTCCT
* *
742021 TTTTTAAAGCCCATACAAGTTGGTGACACCCCTTTCTTTTTTCATTTTCAAAGCCCACACAGGTT
1 TTTTTAAAGCCCACACAAGTTGGTGGCACCCCTTT-TTTTTTCATTTTCAAAGCCCACACAGGTT
**
742086 GGTGGCA-CCCTTTTC
65 AATGGCACCCCTTTTC
* * *
742101 TTTTTAAAGCCCACACAAGTTGGTGGTACCCC-GTTTTTTTCTTTTTCAAAGCCCACACAGGTTA
1 TTTTTAAAGCCCACACAAGTTGGTGGCACCCCTTTTTTTTTCATTTTCAAAGCCCACACAGGTTA
*
742165 ATGGTACCCCTTTTC
66 ATGGCACCCCTTTTC
* *
742180 TTTTTAAAGCCCACATAAGTTGGTGGCAACCCTTTT
1 TTTTTAAAGCCCACACAAGTTGGTGGCACCCCTTTT
742216 CAAAGCCCAC
Statistics
Matches: 101, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
78 32 0.32
79 38 0.38
80 31 0.31
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.36
Consensus pattern (80 bp):
TTTTTAAAGCCCACACAAGTTGGTGGCACCCCTTTTTTTTTCATTTTCAAAGCCCACACAGGTTA
ATGGCACCCCTTTTC
Found at i:742282 original size:33 final size:32
Alignment explanation
Indices: 742179--742282 Score: 100
Period size: 32 Copynumber: 3.2 Consensus size: 32
742169 TACCCCTTTT
* * *
742179 CTTTTTAAAGCCCACATAAGTTGGTGGCAACC
1 CTTTTCAAAGCCCACACAAGTAGGTGGCAACC
* * * *
742211 CTTTTCAAAGCCCACACAAGTCGATAGTAACCC
1 CTTTTCAAAGCCCACACAAGTAGGTGGCAA-CC
* *
742244 CTTTTCAAAAGCTCGCACAAGTAGGTGGCAACC
1 CTTTTC-AAAGCCCACACAAGTAGGTGGCAACC
*
742277 ATTTTC
1 CTTTTC
742283 TTTTTTTTCC
Statistics
Matches: 57, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
32 24 0.42
33 15 0.26
34 18 0.32
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (32 bp):
CTTTTCAAAGCCCACACAAGTAGGTGGCAACC
Found at i:742424 original size:36 final size:36
Alignment explanation
Indices: 742337--742443 Score: 133
Period size: 36 Copynumber: 3.0 Consensus size: 36
742327 TTCCTTCTTT
* * * * * *
742337 AAGCCTACACAAGTTAGTGGCATCCCTTCCTTTTCA
1 AAGCCCACACAAGTTGGTGGTACCCCTTTCTTTTTA
742373 AAGCCCACACAAGTTGGTGGTACCCCTTTCTTTTTA
1 AAGCCCACACAAGTTGGTGGTACCCCTTTCTTTTTA
* * *
742409 AAGCCCCCACAAGTTGGTGTTACCTCTTTCTTTTT
1 AAGCCCACACAAGTTGGTGGTACCCCTTTCTTTTT
742444 TTCATTATCA
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 62 1.00
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.35
Consensus pattern (36 bp):
AAGCCCACACAAGTTGGTGGTACCCCTTTCTTTTTA
Found at i:742602 original size:30 final size:30
Alignment explanation
Indices: 742566--742627 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
742556 CTTTTTTTTT
*
742566 CCTTTTTCAAGCCCACACAAGTTGGTGGCA
1 CCTTTTTCAAGCCCACACAAATTGGTGGCA
* *
742596 CCTTTTTTAAGCCCATACAAATTGGTGGCA
1 CCTTTTTCAAGCCCACACAAATTGGTGGCA
742626 CC
1 CC
742628 CCTTTTTTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (30 bp):
CCTTTTTCAAGCCCACACAAATTGGTGGCA
Found at i:742622 original size:71 final size:70
Alignment explanation
Indices: 742533--742665 Score: 187
Period size: 71 Copynumber: 1.9 Consensus size: 70
742523 CCCTTTTCAA
* ** * *
742533 AAGCCCACATAAATTGGTGGCACCTTTTTTTTTCCTTTTTCAAGCCCACA-CAAGTTGGTGGCAC
1 AAGCCCACACAAATTGGTGGCACCCCTTTTTTTCC-TATTAAAGCCCACACCAA-TTGGTGGCAC
742597 CTTTTTT
64 CTTTTTT
*
742604 AAGCCCATACAAATTGGTGGCACCCCTTTTTTTCCTATTAAAGCCCACACCAATTGGTGGCA
1 AAGCCCACACAAATTGGTGGCACCCCTTTTTTTCCTATTAAAGCCCACACCAATTGGTGGCA
742666 TCATCTTTAA
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
70 21 0.38
71 34 0.62
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33
Consensus pattern (70 bp):
AAGCCCACACAAATTGGTGGCACCCCTTTTTTTCCTATTAAAGCCCACACCAATTGGTGGCACCT
TTTTT
Found at i:743418 original size:20 final size:20
Alignment explanation
Indices: 743384--743434 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
743374 TAAAATTTGC
743384 ATCGATACAATAAGTGAATGT
1 ATCGATAC-ATAAGTGAATGT
*
743405 ATTGATACATAAGTGAATGT
1 ATCGATACATAAGTGAATGT
743425 ATCGATACAT
1 ATCGATACAT
743435 GTCTAAAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 21 0.75
21 7 0.25
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ATCGATACATAAGTGAATGT
Found at i:746043 original size:81 final size:79
Alignment explanation
Indices: 745860--746296 Score: 361
Period size: 81 Copynumber: 5.5 Consensus size: 79
745850 AACATTAAAA
* * * *
745860 GGGGATATTCTAACCCCTACCATTTTCGAGGGAATACTCCAA-CCC-TGTTTACTTCTAAAAATA
1 GGGGATACTCTAACCCC-ACTATTTTCAAGGG-ATACTCCAACCCCATTTTTACTTCTAAAAATA
*
745923 T-AATTTTTCATCTAT-
64 TCAAATTTTCATCT-TC
* * * * *
745938 GGGAATACTCTAACCCTACCATTTCCAATGGGATACTCTAACCCCATTTTTAC-TCTTAAAAATA
1 GGGGATACTCTAACCCCACTATTTTCAA-GGGATACTCCAACCCCATTTTTACTTC-TAAAAATA
*
746002 TCAAATTTTCTATCTTT
64 TCAAATTTTC-ATCTTC
* * * *
746019 GGGGATACTCCAACCCCACTA-TTTCGAGGGGAAACTCCAA-CCTAGTTTTTACTTCT-AAAATA
1 GGGGATACTCTAACCCCACTATTTTC-AAGGGATACTCCAACCCCA-TTTTTACTTCTAAAAATA
*
746081 TCAAAATTTTCATCTAC
64 TC-AAATTTTCATCTTC
* * * * ***
746098 AGGGATACTCTAACCCCACCATTTTCAAAGGAATACTCCAATCTTGTTTTTACTTCTAAAAATAT
1 GGGGATACTCTAACCCCACTATTTTC-AAGGGATACTCCAACCCCATTTTTACTTCTAAAAATAT
*
746163 TAAATTTTCCATCTTC
65 CAAATTTT-CATCTTC
** * * * ** * *
746179 AAGGAAACTTTAA-GCCTGTCATTTTCGAGGAGATACTCCAACCCCGTTTTTACTTCTAAAAATA
1 GGGGATACTCTAACCCCACT-ATTTTCAAGG-GATACTCCAACCCCATTTTTACTTCTAAAAATA
746243 TCAAATTTTCCATCTTC
64 TCAAATTTT-CATCTTC
* *
746260 GGGGATACTCTAACCCCACTATCTTCGAGGAGATACT
1 GGGGATACTCTAACCCCACTATTTTCAAGG-GATACT
746297 TTAACCTTGT
Statistics
Matches: 290, Mismatches: 51, Indels: 33
0.78 0.14 0.09
Matches are distributed among these distances:
77 17 0.06
78 22 0.08
79 48 0.17
80 75 0.26
81 125 0.43
82 3 0.01
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.34
Consensus pattern (79 bp):
GGGGATACTCTAACCCCACTATTTTCAAGGGATACTCCAACCCCATTTTTACTTCTAAAAATATC
AAATTTTCATCTTC
Found at i:746150 original size:160 final size:159
Alignment explanation
Indices: 745860--746278 Score: 399
Period size: 160 Copynumber: 2.6 Consensus size: 159
745850 AACATTAAAA
* *
745860 GGGGATATTCTAACCCCTACCATTTTCGA-GGGAATACTCCAACCCTG--TTTACTTCTAAAA-A
1 GGGGATACTCTAACCCC-ACTA-TTTCGAGGGGAA-ACTCCAA-CCTGTTTTTACTTCTAAAATA
* * * * * *
745921 T-ATAATTTTTCATCTA-TGGGAATACTCTAACCCTACCATTTCCAATGGGATACTCTAACCCCA
62 TCA-AAATTTTCATCTACAGGG-ATACTCTAACCCCACCATTTCCAAAGGAATACTCCAACCCCA
* *
745984 TTTTTAC-TCTTAAAAATATCAAATTTTCTATCTTT
125 TTTTTACTTC-TAAAAATATCAAATTTTCCATCTTC
*
746019 GGGGATACTCCAACCCCACTATTTCGAGGGGAAACTCCAACCTAGTTTTTACTTCTAAAATATCA
1 GGGGATACTCTAACCCCACTATTTCGAGGGGAAACTCCAACCT-GTTTTTACTTCTAAAATATCA
* * ***
746084 AAATTTTCATCTACAGGGATACTCTAACCCCACCATTTTCAAAGGAATACTCCAATCTTGTTTTT
65 AAATTTTCATCTACAGGGATACTCTAACCCCACCATTTCCAAAGGAATACTCCAACCCCATTTTT
*
746149 ACTTCTAAAAATATTAAATTTTCCATCTTC
130 ACTTCTAAAAATATCAAATTTTCCATCTTC
** * * * * * *
746179 AAGGAAACTTTAAGCCTGTCA-T-TTTCGAGGAGATACTCCAACCCCGTTTTTACTTCTAAAAAT
1 GGGGATACTCTAA-CC--CCACTATTTCGAGGGGAAACTCCAA-CCTGTTTTTACTTCT-AAAAT
* *
746242 ATC-AAATTTTCCATCTTCGGGGATACTCTAACCCCAC
61 ATCAAAATTTT-CATCTACAGGGATACTCTAACCCCAC
746279 TATCTTCGAG
Statistics
Matches: 218, Mismatches: 28, Indels: 25
0.80 0.10 0.09
Matches are distributed among these distances:
156 3 0.01
157 14 0.06
158 8 0.04
159 28 0.13
160 84 0.39
161 44 0.20
162 35 0.16
163 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.34
Consensus pattern (159 bp):
GGGGATACTCTAACCCCACTATTTCGAGGGGAAACTCCAACCTGTTTTTACTTCTAAAATATCAA
AATTTTCATCTACAGGGATACTCTAACCCCACCATTTCCAAAGGAATACTCCAACCCCATTTTTA
CTTCTAAAAATATCAAATTTTCCATCTTC
Found at i:748438 original size:92 final size:90
Alignment explanation
Indices: 748141--748437 Score: 335
Period size: 92 Copynumber: 3.2 Consensus size: 90
748131 GCAGCCTATA
* * *
748141 CATTCCCAATCATATCCCTTTCATCCAACCACTAGATGATATTGATGCATCACAAAGCCTGATTT
1 CATTCCCAATCATATCCCTTTCATCCAACCACTAAATGATATTGATGCATCACAAAACCT-AATT
*
748206 CCTTAGGGGAAAGATATCCTGACCACA
65 CC-TAGGGGAAAGATATCCTGACCACT
* **
748233 CATTCCTAATCATATCCCTTTCATCCAACCACTAAATGATATTGATGCATCATTAAACC-AGAGT
1 CATTCCCAATCATATCCCTTTCATCCAACCACTAAATGATATTGATGCATCACAAAACCTA-A-T
* * * **
748297 TCTTTGGAGAAAAGATATCCAAACCACT
64 TCCTAGG-GGAAAGATATCCTGACCACT
* * ** * *
748325 TATTCCCAATCATATCCCTTTTCTTTTAGCCACTAAATGGTATTGATGCATCACAAAACCTAATT
1 CATTCCCAATCATATCCC-TTTCATCCAACCACTAAATGATATTGATGCATCACAAAACCTAATT
* * *
748390 CCTCGGGGCAAGGATATCTTGACCACT
65 CCTAGGGG-AAAGATATCCTGACCACT
748417 CATTCCCAATCATATCCCTTT
1 CATTCCCAATCATATCCCTTT
748438 TTTAAGCCAC
Statistics
Matches: 170, Mismatches: 29, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
90 1 0.01
91 7 0.04
92 126 0.74
93 35 0.21
94 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.30
Consensus pattern (90 bp):
CATTCCCAATCATATCCCTTTCATCCAACCACTAAATGATATTGATGCATCACAAAACCTAATTC
CTAGGGGAAAGATATCCTGACCACT
Found at i:748776 original size:15 final size:15
Alignment explanation
Indices: 748756--748786 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
748746 TGAATCAAAT
748756 CATGGAAATCCATGC
1 CATGGAAATCCATGC
748771 CATGGAAATCCATGC
1 CATGGAAATCCATGC
748786 C
1 C
748787 CATTCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.19
Consensus pattern (15 bp):
CATGGAAATCCATGC
Found at i:749165 original size:43 final size:44
Alignment explanation
Indices: 749043--749449 Score: 263
Period size: 43 Copynumber: 9.3 Consensus size: 44
749033 AGACCTAGAT
* * *
749043 GTCAAACTCTTTTCACTATCATTTGACGTGATAGTTTTGCCCTG
1 GTCAAACTCTTTTCACTCTCATTTGACGTGATGGTTCTGCCCTG
* * * ** * *
749087 GTCAAACCCTTTTCATTTTTGTTTGACGTGATGGTTCTACCCTA
1 GTCAAACTCTTTTCACTCTCATTTGACGTGATGGTTCTGCCCTG
* *
749131 GTCAAACTCTTTTCA-TCTCATTTGACGTGATGGTTCTACCCTA
1 GTCAAACTCTTTTCACTCTCATTTGACGTGATGGTTCTGCCCTG
* * * * * * *
749174 GTCAAACTCTTTTTA-GCTCATCTAATGTGATGGTTTTGCCATG
1 GTCAAACTCTTTTCACTCTCATTTGACGTGATGGTTCTGCCCTG
* * * * *
749217 GTCAAACTCTTTTTACTTTCGTTTGACGTGATGGCTT-TGCCTTA
1 GTCAAACTCTTTTCACTCTCATTTGACGTGATGG-TTCTGCCCTG
* * * * * * * **
749261 GTCAAACTTTTTTCATTATCGTTCGATGTGATAGTTC-AACCTCG
1 GTCAAACTCTTTTCACTCTCATTTGACGTGATGGTTCTGCCCT-G
* * * * * * *
749305 GTTAAACT-TCTTTCA-TTTCATTTTATGTGATGTTTCCGTCCTG
1 GTCAAACTCT-TTTCACTCTCATTTGACGTGATGGTTCTGCCCTG
* * *
749348 GTCAAACTCCTTTCA-TCTCTTTTGACGTGATGGTTTTGCCCTG
1 GTCAAACTCTTTTCACTCTCATTTGACGTGATGGTTCTGCCCTG
* ** * * * *
749391 GTCAAATTCCGTTCACTTTCGTTTGATGCGATGGTT-TAGCCCTG
1 GTCAAACTCTTTTCACTCTCATTTGACGTGATGGTTCT-GCCCTG
*
749435 GTCAAACTTTTTTCA
1 GTCAAACTCTTTTCA
749450 TCCTCGTTAG
Statistics
Matches: 284, Mismatches: 70, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
43 141 0.50
44 141 0.50
45 2 0.01
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.43
Consensus pattern (44 bp):
GTCAAACTCTTTTCACTCTCATTTGACGTGATGGTTCTGCCCTG
Found at i:749356 original size:174 final size:173
Alignment explanation
Indices: 749043--749450 Score: 424
Period size: 174 Copynumber: 2.3 Consensus size: 173
749033 AGACCTAGAT
* * * ** * *
749043 GTCAAACTCTTTTCACTATCATTTGACGTGATAGTTTTGCCCTGGTCAAACCCTTTTCATTTTTG
1 GTCAAACTCTTTTCACTTTCGTTTGACGTGAT-GGTTTGCCCTGGTCAAACTTTTTTCATTATCG
* * * *
749108 TTTGACGTGATGGTTCTACCCTAGTCAAACTCTTTTCATCTCATTTGACGTGATGGTTCTACCCT
65 TTCGACGTGATAGTTCAACCCTAGTCAAACTCTTTTCATCTCATTTGACGTGATGGTTCCACCCT
* * *
749173 AGTCAAACTCTTTTTAGCTCATCTAATGTGATGGTTTTGCCATG
130 AGTCAAACTCCTTTCAGCTCATCTAACGTGATGGTTTTGCCATG
* * *
749217 GTCAAACTCTTTTTACTTTCGTTTGACGTGATGGCTTTGCCTTAGTCAAACTTTTTTCATTATCG
1 GTCAAACTCTTTTCACTTTCGTTTGACGTGATGG-TTTGCCCTGGTCAAACTTTTTTCATTATCG
* * * * * * * **
749282 TTCGATGTGATAGTTCAA-CCTCGGTTAAACT-TCTTTCATTTCATTTTATGTGATGTTTCCGTC
65 TTCGACGTGATAGTTCAACCCT-AGTCAAACTCT-TTTCATCTCATTTGACGTGATGGTTCCACC
* * * * * *
749345 CTGGTCAAACTCCTTTCATCTCTTTTGACGTGATGGTTTTGCCCTG
128 CTAGTCAAACTCCTTTCAGCTCATCTAACGTGATGGTTTTGCCATG
* ** * *
749391 GTCAAATTCCGTTCACTTTCGTTTGATGCGATGGTTTAGCCCTGGTCAAACTTTTTTCAT
1 GTCAAACTCTTTTCACTTTCGTTTGACGTGATGGTTT-GCCCTGGTCAAACTTTTTTCAT
749451 CCTCGTTAGA
Statistics
Matches: 190, Mismatches: 40, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
173 8 0.04
174 182 0.96
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.43
Consensus pattern (173 bp):
GTCAAACTCTTTTCACTTTCGTTTGACGTGATGGTTTGCCCTGGTCAAACTTTTTTCATTATCGT
TCGACGTGATAGTTCAACCCTAGTCAAACTCTTTTCATCTCATTTGACGTGATGGTTCCACCCTA
GTCAAACTCCTTTCAGCTCATCTAACGTGATGGTTTTGCCATG
Found at i:750901 original size:150 final size:154
Alignment explanation
Indices: 750582--750925 Score: 457
Period size: 150 Copynumber: 2.3 Consensus size: 154
750572 AGAATCAATC
* * *
750582 TTGAAAAATTTAATTTATTTTATGACTTTTAGAAA-TTTTCTTGTTATCAAAATACAGAGTTTTC
1 TTGAAAAATTTAATTTATTTTATGAGTTTTA-AAATTTTTCCTATTATCAAAATACAGAGTTTTC
* * *
750646 TTCTCCGTAAATTTTTTCGATAAGATTTTTCTAAGTTTATAATTTTAAAAATTCTTCAAATATTA
65 TTCTCCGTAAATTTTTACGATAAGATTTTTCTAAGTCTATAATTTTAAAAATTATTCAAATATTA
* * *
750711 TTGTTTAAATGATATTAAATCAGTT
130 TAGCTTAAATGATACTAAATCAGTT
* * * *
750736 TTGAAAAATTCAATTTATTTTATGAGTTGTAAAATTTTTCCTATTATCGAAATACGGAG-TTTCT
1 TTGAAAAATTTAATTTATTTTATGAGTTTTAAAATTTTTCCTATTATCAAAATACAGAGTTTTCT
* *
750800 TCTCCGTAAA-TTTTACGGA-AAGA-TTTTCTAAGTCTATAATTTT-CAAATTATTTAAATATTA
66 TCTCCGTAAATTTTTAC-GATAAGATTTTTCTAAGTCTATAATTTTAAAAATTATTCAAATATTA
*
750861 TAGCTTAATTGATACTAAATCAGTT
130 TAGCTTAAATGATACTAAATCAGTT
* *
750886 TTGAAAATTTTAATTTATTTTTTGAGTTTTAAAATATTTT
1 TTGAAAAATTTAATTTATTTTATGAGTTTTAAAAT-TTTT
750926 TTGTTTCCAA
Statistics
Matches: 167, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
150 67 0.40
151 23 0.14
152 9 0.05
153 20 0.12
154 48 0.29
ACGTcount: A:0.34, C:0.08, G:0.09, T:0.48
Consensus pattern (154 bp):
TTGAAAAATTTAATTTATTTTATGAGTTTTAAAATTTTTCCTATTATCAAAATACAGAGTTTTCT
TCTCCGTAAATTTTTACGATAAGATTTTTCTAAGTCTATAATTTTAAAAATTATTCAAATATTAT
AGCTTAAATGATACTAAATCAGTT
Found at i:751226 original size:20 final size:20
Alignment explanation
Indices: 751201--751238 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
751191 TAGTTTTAAC
751201 TTTTATTAATTTTAAATTTA
1 TTTTATTAATTTTAAATTTA
*
751221 TTTTATTTATTTTAAATT
1 TTTTATTAATTTTAAATT
751239 GTAGACACCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTATTAATTTTAAATTTA
Found at i:751228 original size:16 final size:16
Alignment explanation
Indices: 751182--751228 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
751172 TATTTTTGAG
751182 AATTTATTTTAGTTTTA
1 AATTTATTTTA-TTTTA
* *
751199 ACTTT-TATTAATTTTA
1 AATTTAT-TTTATTTTA
751215 AATTTATTTTATTT
1 AATTTATTTTATTT
751229 ATTTTAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
16 16 0.67
17 8 0.33
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (16 bp):
AATTTATTTTATTTTA
Found at i:751526 original size:20 final size:20
Alignment explanation
Indices: 751501--751575 Score: 98
Period size: 20 Copynumber: 3.8 Consensus size: 20
751491 TTTTCACAAT
751501 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
* *
751521 TTGTATTGATACA-TGTTGAA
1 TTGTATCGATACATTGTT-CA
* *
751541 TTGTATCGATACATCGCTCA
1 TTGTATCGATACATTGTTCA
751561 TTGTATCGATACATT
1 TTGTATCGATACATT
751576 TAGGCATTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
19 4 0.09
20 40 0.87
21 2 0.04
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.43
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:753939 original size:51 final size:51
Alignment explanation
Indices: 753864--754037 Score: 201
Period size: 51 Copynumber: 3.4 Consensus size: 51
753854 GAATTTCTAT
* * *
753864 ATTTTTCAT-CTCGGGGATACTCCAA-TCCCGGTTTCATTTCCAAAACATCA
1 ATTTTTCATAATCGGGGATACTCCAACT-CCGATTTTATTTCCAAAACATCA
* * *
753914 ATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTCTAAAACACCC
1 ATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACATCA
* ** *
753965 ATTTTCCATAATTAGGGATACTCCAACTCCGATTTTATTTCCAAAACACTGA
1 ATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACA-TCA
* *
754017 A-TTTTCACAATCGAGGATACT
1 ATTTTTCATAATCGGGGATACT
754038 TTAACCCTGT
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
50 9 0.09
51 92 0.89
52 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.34
Consensus pattern (51 bp):
ATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACATCA
Found at i:754214 original size:79 final size:79
Alignment explanation
Indices: 753979--754387 Score: 481
Period size: 79 Copynumber: 5.2 Consensus size: 79
753969 TCCATAATTA
* * * * * **
753979 GGGATACTCCAACTCCGATTTTATTTCCAAAACACTGAA-TTTTCACAATCGAGGATACTTTAAC
1 GGGATACTCCAACCCCGATTTTATTTCTAAAACA-TCAATTTTTCATAATCGGGGATACTCCAAC
*
754043 CCTGTTATTTCTGAG
65 CCCGTTATTTCTGAG
* *
754058 GGGACACTCCAACCCCGATTTTGTTTCTAAAACATCAATTTTTC---ATCGGGGATACTCCAACC
1 GGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACC
754120 CCGTTATTT-TCGAG
66 CCGTTATTTCT-GAG
* * * * *
754134 GGGATACCCCAACCCCAACTTTATTTCTAAAATATTAATTTCTT-ATAATCGGGGATACTCCAAC
1 GGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTT-TTCATAATCGGGGATACTCCAAC
*
754198 CTCGTTATTTCTGAG
65 CCCGTTATTTCTGAG
* * * *
754213 GGGATACTCCAACCCTGGTTTTATTTCTAAAACATCAATTTTTCATAGTCGGGGACACTCCAACC
1 GGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACC
*
754278 CCGTTATTTCTGAA
66 CCGTTATTTCTGAG
* * * * *
754292 GAGATACTCCAATCCCGATTTTATTTCTAAATCATCGATTTTTCACAATCGGGGATACTCCAACC
1 GGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACC
*
754357 CTGTTATTT-TCGAG
66 CCGTTATTTCT-GAG
*
754371 GAGATACTCCAACCCCG
1 GGGATACTCCAACCCCG
754388 TTATTATCTC
Statistics
Matches: 281, Mismatches: 40, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
75 1 0.00
76 60 0.21
77 2 0.01
78 6 0.02
79 211 0.75
80 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.33
Consensus pattern (79 bp):
GGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACC
CCGTTATTTCTGAG
Found at i:755336 original size:77 final size:77
Alignment explanation
Indices: 755209--755364 Score: 312
Period size: 77 Copynumber: 2.0 Consensus size: 77
755199 GACCACCCGA
755209 GACTTATAAGATAAGCAATTCGTCCGATAGTCTTTCACTCTCGCATATTGACTATCCCCTTTTAT
1 GACTTATAAGATAAGCAATTCGTCCGATAGTCTTTCACTCTCGCATATTGACTATCCCCTTTTAT
755274 TTTAAGTCGAGT
66 TTTAAGTCGAGT
755286 GACTTATAAGATAAGCAATTCGTCCGATAGTCTTTCACTCTCGCATATTGACTATCCCCTTTTAT
1 GACTTATAAGATAAGCAATTCGTCCGATAGTCTTTCACTCTCGCATATTGACTATCCCCTTTTAT
755351 TTTAAGTCGAGT
66 TTTAAGTCGAGT
755363 GA
1 GA
755365 GCTTTGGCTC
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 79 1.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (77 bp):
GACTTATAAGATAAGCAATTCGTCCGATAGTCTTTCACTCTCGCATATTGACTATCCCCTTTTAT
TTTAAGTCGAGT
Found at i:756935 original size:166 final size:164
Alignment explanation
Indices: 756693--757116 Score: 469
Period size: 165 Copynumber: 2.6 Consensus size: 164
756683 GAAGATTTCC
* * * *
756693 ATTATTCCTATGGCCTTCCTTAAGGGTATAGAAATTTTTAAAACATTTAGTATCCTT-TTGGTTT
1 ATTATTCCTATGGCCTTCCATAGGGGTATAGAAATTTTTAAAACATTTAATAT-CTTCTCGG-TT
* * * * * *
756757 TTCGACGAGTATGAAATGAAATTTTCAAAGGTGTAGGGACTAAATAGCAAATTTGGTTTTTA-AA
64 TTCCATGAGTATGAAATGAAATTTTCAAAAGT-TAGGGACGAAAGAGCAAATTTGGATTTTAGAA
*
756821 AGAAAAATAAGT-ATCTTAGTCATTTTATTTAAATTTAT
128 A-AAAAATAA-TCATCTTAGTAATTTTATTTAAATTTAT
* * * *
756859 ATTATTCTTATGGTCTTCCATAGGGGTATAGAAGTTTTTAAAACTTTTAATATCTTCTCGGTTTT
1 ATTATTCCTATGGCCTTCCATAGGGGTATAGAAATTTTTAAAACATTTAATATCTTCTCGGTTTT
* *
756924 CCATTGAGTATGAAATGAAATTTTCAAAAGTTTGGGACGAAAGATCAAATTTGGATTTTAGAAAA
66 CCA-TGAGTATGAAATGAAATTTTCAAAAGTTAGGGACGAAAGAGCAAATTTGGATTTTAGAAAA
* * * *
756989 AAAATCATCATCTTAGTAATTTTCTTTAGATTTCT
130 AAAATAATCATCTTAGTAATTTTATTTAAATTTAT
* * * * * * *
757024 ATTATTCCTATGGCCTTCCATAGGGATATAGAAACTTATAAAACCTTTCATATCCTCTCAGTTTT
1 ATTATTCCTATGGCCTTCCATAGGGGTATAGAAATTTTTAAAACATTTAATATCTTCTCGGTTTT
** * *
757089 CTGGTAAGCATGAAATGAAA-TTTCAAAA
66 C-CATGAGTATGAAATGAAATTTTCAAAA
757117 ACTTAAGGAC
Statistics
Matches: 218, Mismatches: 35, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
164 9 0.04
165 132 0.61
166 77 0.35
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39
Consensus pattern (164 bp):
ATTATTCCTATGGCCTTCCATAGGGGTATAGAAATTTTTAAAACATTTAATATCTTCTCGGTTTT
CCATGAGTATGAAATGAAATTTTCAAAAGTTAGGGACGAAAGAGCAAATTTGGATTTTAGAAAAA
AAATAATCATCTTAGTAATTTTATTTAAATTTAT
Found at i:757781 original size:149 final size:149
Alignment explanation
Indices: 757618--757968 Score: 443
Period size: 149 Copynumber: 2.3 Consensus size: 149
757608 CTGCTTTTAT
* * *
757618 GCCAAGGGTATGAATTAGGAGTAGGTTCGTTTTTACTTTTTCAAGTCCTCTAGGAACACTGAGCA
1 GCCAAAGGTATGAATTAGGAGTAGGTTCATTTTTACTTTTTCAAGTCCTCTAGGAACACCGAGCA
* * * * **
757683 CTTTTAAGTTAATCGTAGACCTTAGGGACCTTTTAGTA-TTTTTCCCAAAACTTAGTCCTACAAA
66 CTTCTAAGTTAATAGTAAACCTTAGGGACATTTTAACATTTTTTCCCAAAAC-TAGTCCTACAAA
* *
757747 ACTACTAGGTCCGCTTCAAC
130 ACTACGAAGTCCGCTTCAAC
* * * * *
757767 GCCAAAGGTATGAATTAGGAGCAGGTTCACTTTTACTTTTTTAAGTCCTCTAGGATCACCGGGCA
1 GCCAAAGGTATGAATTAGGAGTAGGTTCATTTTTACTTTTTCAAGTCCTCTAGGAACACCGAGCA
* * * *
757832 CTTCTAAGTTGATAGTAAACCTTAGGGACATTTTAACATTTTTTTCGAAAACTAGTCCTATAAAA
66 CTTCTAAGTTAATAGTAAACCTTAGGGACATTTTAACATTTTTTCCCAAAACTAGTCCTACAAAA
* *
757897 CTACGAAGTTCGCTTCTAC
131 CTACGAAGTCCGCTTCAAC
* * * *
757916 GCCAAAGGTATGAATTAGGAATAGGTTTATTTTTATCTTTTCCAAGTTCTCTA
1 GCCAAAGGTATGAATTAGGAGTAGGTTCATTTTTA-CTTTTTCAAGTCCTCTA
757969 AGATATCCGG
Statistics
Matches: 171, Mismatches: 29, Indels: 3
0.84 0.14 0.01
Matches are distributed among these distances:
149 146 0.85
150 25 0.15
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (149 bp):
GCCAAAGGTATGAATTAGGAGTAGGTTCATTTTTACTTTTTCAAGTCCTCTAGGAACACCGAGCA
CTTCTAAGTTAATAGTAAACCTTAGGGACATTTTAACATTTTTTCCCAAAACTAGTCCTACAAAA
CTACGAAGTCCGCTTCAAC
Found at i:760263 original size:25 final size:27
Alignment explanation
Indices: 760220--760269 Score: 77
Period size: 25 Copynumber: 1.9 Consensus size: 27
760210 TTTTAAAATT
*
760220 TTATAATATTTTTAAAATACAATAAAA
1 TTATAATATTTTTAAAATAAAATAAAA
760247 TTATAA-ATTTTT-AAATAAAATAA
1 TTATAATATTTTTAAAATAAAATAA
760270 TAAAAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 10 0.45
26 6 0.27
27 6 0.27
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (27 bp):
TTATAATATTTTTAAAATAAAATAAAA
Found at i:760278 original size:26 final size:26
Alignment explanation
Indices: 760222--760279 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
760212 TTAAAATTTT
* **
760222 ATAATATTTTTAAAATACAATAAAATT
1 ATAA-ATTTTTAAAATAAAATAAAAAA
760249 ATAAATTTTT-AAATAAAATAATAAAA
1 ATAAATTTTTAAAATAAAATAA-AAAA
760275 ATAAA
1 ATAAA
760280 AAAATTATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 10 0.37
26 13 0.48
27 4 0.15
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (26 bp):
ATAAATTTTTAAAATAAAATAAAAAA
Found at i:764011 original size:18 final size:18
Alignment explanation
Indices: 763969--764016 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
763959 TAAATAAATT
763969 CATACTTATG-TTTTCTA
1 CATACTTATGATTTTCTA
*
763986 -ATAATTATGATTTT-TAA
1 CATACTTATGATTTTCT-A
764003 CATACTTAT-ATTTT
1 CATACTTATGATTTT
764017 GGGCAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
16 9 0.35
17 10 0.38
18 7 0.27
ACGTcount: A:0.31, C:0.10, G:0.04, T:0.54
Consensus pattern (18 bp):
CATACTTATGATTTTCTA
Found at i:771257 original size:6 final size:7
Alignment explanation
Indices: 771241--771265 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
771231 ATCTTTCTGC
771241 TTTTCCT
1 TTTTCCT
771248 TTTTCCT
1 TTTTCCT
771255 TTTTCCT
1 TTTTCCT
771262 TTTT
1 TTTT
771266 TTTTAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTCCT
Found at i:773409 original size:16 final size:16
Alignment explanation
Indices: 773384--773416 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
773374 TTTGATCAAC
*
773384 TCTAGTGAATTATAAT
1 TCTAGCGAATTATAAT
773400 TCTAGCGAATTATAAT
1 TCTAGCGAATTATAAT
773416 T
1 T
773417 ATTACATTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.42
Consensus pattern (16 bp):
TCTAGCGAATTATAAT
Found at i:775428 original size:4 final size:4
Alignment explanation
Indices: 775404--775446 Score: 50
Period size: 4 Copynumber: 10.5 Consensus size: 4
775394 ATGAATAATA
* * *
775404 AAAT AATAT ATAT AAAC AAAT AAAT AAAT AAAT AAAC AAAT AA
1 AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
775447 GCCAAATAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
4 29 0.91
5 3 0.09
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:775738 original size:12 final size:13
Alignment explanation
Indices: 775721--775754 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
775711 AAATTATATG
775721 GTTATTTTT-TTT
1 GTTATTTTTGTTT
775733 GTTATTTTTGTTT
1 GTTATTTTTGTTT
*
775746 TTTATTTTT
1 GTTATTTTT
775755 ATGAGTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.82
Consensus pattern (13 bp):
GTTATTTTTGTTT
Found at i:775817 original size:29 final size:29
Alignment explanation
Indices: 775768--775823 Score: 96
Period size: 29 Copynumber: 1.9 Consensus size: 29
775758 AGTTTAAAGT
775768 ATAAAAAATTTATTTATTTTTTTATATAG
1 ATAAAAAATTTATTTATTTTTTTATATAG
775797 ATAAAAAA-TTATTTATATTTTTTATAT
1 ATAAAAAATTTATTTAT-TTTTTTATAT
775824 TATATATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 8 0.31
29 18 0.69
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (29 bp):
ATAAAAAATTTATTTATTTTTTTATATAG
Found at i:775953 original size:26 final size:26
Alignment explanation
Indices: 775916--776060 Score: 81
Period size: 26 Copynumber: 5.6 Consensus size: 26
775906 TATGTTCGAC
*
775916 ATAAATAAAATAATAAAT-AAAATAA-
1 ATAAATATAAT-ATAAATAAAAATAAT
* *
775941 ATAAAATATAATATACATAAAAATTAT
1 AT-AAATATAATATAAATAAAAATAAT
** *
775968 ATAAATATAATATAAATTTATATAAT
1 ATAAATATAATATAAATAAAAATAAT
*
775994 A-AAAT-T-AT-TAAGTATCAAAA-AAT
1 ATAAATATAATATAA--ATAAAAATAAT
**
776017 ATATAATATAATA-AATATAATTTATAAT
1 ATA-AATATAATATAA-ATAA-AAATAAT
*
776045 ATAAAAATAATATAAA
1 ATAAATATAATATAAA
776061 CATAATATAA
Statistics
Matches: 92, Mismatches: 15, Indels: 24
0.70 0.11 0.18
Matches are distributed among these distances:
22 3 0.03
23 6 0.07
24 6 0.07
25 14 0.15
26 39 0.42
27 16 0.17
28 8 0.09
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (26 bp):
ATAAATATAATATAAATAAAAATAAT
Found at i:775976 original size:21 final size:21
Alignment explanation
Indices: 775946--776071 Score: 64
Period size: 21 Copynumber: 5.9 Consensus size: 21
775936 AATAAATAAA
775946 ATAT-AATATACATA-AAAATT
1 ATATAAATATA-ATATAAAATT
*
775966 ATATAAATATAATATAAATTT
1 ATATAAATATAATATAAAATT
* * *
775987 ATAT-AATAAAATTATTAAGTATC
1 ATATAAATATAA-TA-TAA-AATT
* *
776010 AAAAAATATATAATATAATAA--
1 ATATAA-ATATAATATAA-AATT
* *
776031 ATATAATTTATAATATAAAAATA
1 ATATAA-ATATAATATAA-AATT
*
776054 ATATAAACATAATATAAA
1 ATATAAATATAATATAAA
776072 TATATGAATA
Statistics
Matches: 81, Mismatches: 16, Indels: 17
0.71 0.14 0.15
Matches are distributed among these distances:
20 13 0.16
21 35 0.43
22 12 0.15
23 13 0.16
24 3 0.04
25 5 0.06
ACGTcount: A:0.61, C:0.02, G:0.01, T:0.36
Consensus pattern (21 bp):
ATATAAATATAATATAAAATT
Found at i:776031 original size:99 final size:104
Alignment explanation
Indices: 775920--776109 Score: 232
Period size: 99 Copynumber: 1.9 Consensus size: 104
775910 TTCGACATAA
* *
775920 ATAAAATAATAAATAAAATAAATAAAATATAATATACATA-AAA-ATTATAT-AA-ATAT-AATA
1 ATAAAATAATAAATAAAATAAATAAAATA-AAAATA-ATATAAACATAATATAAATATATGAATA
775980 -TAAATTTAT-ATAATAAAATTATTAAGTATCAAAAAATAT
64 TTAAATTTATAATAATAAAATTATTAAGTATCAAAAAATAT
* * ** *
776019 ATAATATAATAAATATAATTTATAATATAAAAATAATATAAACATAATATAAATATATGAATATT
1 ATAAAATAATAAATAAAATAAATAAAATAAAAATAATATAAACATAATATAAATATATGAATATT
*
776084 AAATTTATACATAATAAATTTATTAA
66 AAATTTATA-ATAATAAAATTATTAA
776110 AATAATTTTA
Statistics
Matches: 75, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
97 3 0.04
98 8 0.11
99 30 0.40
100 2 0.03
101 4 0.05
102 4 0.05
103 9 0.12
105 15 0.20
ACGTcount: A:0.61, C:0.02, G:0.01, T:0.36
Consensus pattern (104 bp):
ATAAAATAATAAATAAAATAAATAAAATAAAAATAATATAAACATAATATAAATATATGAATATT
AAATTTATAATAATAAAATTATTAAGTATCAAAAAATAT
Found at i:776035 original size:9 final size:9
Alignment explanation
Indices: 775919--776067 Score: 64
Period size: 9 Copynumber: 16.4 Consensus size: 9
775909 GTTCGACATA
775919 AATAAA-AT
1 AATAAATAT
*
775927 AATAAATAA
1 AATAAATAT
*
775936 AATAAATAA
1 AATAAATAT
775945 AATATAATAT
1 AATA-AATAT
*
775955 ACATAAAAATT
1 A-ATAAATA-T
775966 ATATAAATAT
1 A-ATAAATAT
775976 AAT--ATA-
1 AATAAATAT
**
775982 AATTTATAT
1 AATAAATAT
775991 AATAAA-ATT
1 AATAAATA-T
* *
776000 ATTAAGTAT
1 AATAAATAT
*
776009 CAAAAAATAT
1 -AATAAATAT
776019 -AT-AATAT
1 AATAAATAT
776026 AATAAATAT
1 AATAAATAT
776035 AATTTATAATAT
1 AA--TA-AATAT
776047 AA-AAATA-
1 AATAAATAT
*
776054 ATATAAACAT
1 A-ATAAATAT
776064 AATA
1 AATA
776068 TAAATATATG
Statistics
Matches: 109, Mismatches: 14, Indels: 35
0.69 0.09 0.22
Matches are distributed among these distances:
6 3 0.03
7 9 0.08
8 18 0.17
9 41 0.38
10 18 0.17
11 13 0.12
12 7 0.06
ACGTcount: A:0.64, C:0.02, G:0.01, T:0.34
Consensus pattern (9 bp):
AATAAATAT
Found at i:778148 original size:19 final size:20
Alignment explanation
Indices: 778102--778153 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
778092 CTATCAATTT
*
778102 TATGTATCGATA-TAATTCAA
1 TATGTATCGATATTAA-TAAA
*
778122 TATATATCGATATTAA-AAA
1 TATGTATCGATATTAATAAA
778141 TATGTATCGATAT
1 TATGTATCGATAT
778154 AATGTATCGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 14 0.50
20 11 0.39
21 3 0.11
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (20 bp):
TATGTATCGATATTAATAAA
Found at i:779611 original size:10 final size:10
Alignment explanation
Indices: 779584--779636 Score: 54
Period size: 10 Copynumber: 5.2 Consensus size: 10
779574 AAAACGAATG
779584 TAAATTAAATA
1 TAAA-TAAATA
**
779595 TTTATAAATA
1 TAAATAAATA
*
779605 TAAATAAATT
1 TAAATAAATA
779615 TAAATAAAATA
1 TAAAT-AAATA
779626 TAAA-AAATA
1 TAAATAAATA
779635 TA
1 TA
779637 TTTCAATAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
9 7 0.20
10 18 0.51
11 10 0.29
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
TAAATAAATA
Found at i:779639 original size:24 final size:24
Alignment explanation
Indices: 779604--779659 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
779594 ATTTATAAAT
*
779604 ATAAATAAATTTAAATAAAATATAA
1 ATAAATATATTTAAATAAAAT-TAA
*
779629 A-AAATATATTTCAATAAAATTAA
1 ATAAATATATTTAAATAAAATTAA
779652 ATAAATAT
1 ATAAATAT
779660 TAACAATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 4 0.14
24 23 0.82
25 1 0.04
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (24 bp):
ATAAATATATTTAAATAAAATTAA
Found at i:783250 original size:23 final size:25
Alignment explanation
Indices: 783217--783282 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 25
783207 ATTTTAAAAT
*
783217 ATAATTTAAATT-ATTAAT-ATAAA
1 ATAATTAAAATTAATTAATAATAAA
783240 ATAATTAAAATTTAATTAATAGATAAA
1 ATAATTAAAA-TTAATTAATA-ATAAA
783267 ATTAATTAAAA-TAATT
1 A-TAATTAAAATTAATT
783283 TTATATTGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
23 9 0.24
24 2 0.05
25 6 0.16
26 5 0.14
27 6 0.16
28 9 0.24
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.41
Consensus pattern (25 bp):
ATAATTAAAATTAATTAATAATAAA
Found at i:783256 original size:28 final size:29
Alignment explanation
Indices: 783219--783278 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
783209 TTTAAAATAT
*
783219 AATTTAAATTATTA-ATATAAAATAATTAA
1 AATTTAAATTAATAGATA-AAAATAATTAA
*
783248 AATTT-AATTAATAGATAAAATTAATTAA
1 AATTTAAATTAATAGATAAAAATAATTAA
783276 AAT
1 AAT
783279 AATTTTATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 20 0.71
29 8 0.29
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (29 bp):
AATTTAAATTAATAGATAAAAATAATTAA
Found at i:783845 original size:20 final size:21
Alignment explanation
Indices: 783806--783857 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
783796 TTTTCCCTTC
*
783806 AAAAAATTATCTAATTTTTTT
1 AAAAAATTATCTAATATTTTT
* *
783827 TAAAAATTAT-TTATATTTTT
1 AAAAAATTATCTAATATTTTT
783847 AAAAAATTATC
1 AAAAAATTATC
783858 CGCATTACTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (21 bp):
AAAAAATTATCTAATATTTTT
Done.