genome.fa.s624.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold624
Parameters: 2 7 7 80 10 50 1000
Length:  104631

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
229--309	40	2.0	40	81	9	94	39	4	2	53	1.36
553--614	30	2.1	29	82	5	72	38	1	8	51	1.41
1971--2011	12	3.6	12	80	9	50	68	0	0	31	0.90
8354--8398	22	2.0	22	100	0	90	51	13	4	31	1.61
8714--8741	8	3.5	8	100	0	56	78	0	0	21	0.75
8774--8877	35	2.9	35	71	13	88	48	0	0	50	1.07
9531--9617	40	2.2	39	85	6	111	49	3	0	47	1.18
9643--9671	13	2.2	13	100	0	58	44	24	13	17	1.85
10599--10641	19	2.2	19	87	8	59	72	0	0	27	0.85
10597--10639	6	6.8	6	79	10	50	74	0	0	25	0.82
10599--10647	21	2.3	21	82	6	55	69	0	0	30	0.89
10650--10710	30	2.0	31	87	9	90	52	0	0	47	1.00
15889--15935	2	23.5	2	100	0	94	48	0	0	51	1.00
19979--20037	29	2.1	28	84	9	75	45	3	3	47	1.36
20212--20254	21	2.0	21	82	8	52	46	4	2	46	1.36
20229--20267	13	2.9	13	85	7	51	51	2	2	43	1.29
20564--20654	38	2.3	39	80	12	107	53	0	1	45	1.07
21390--21441	14	3.6	14	84	2	59	36	0	0	63	0.95
21392--21436	20	2.2	21	84	7	58	35	0	0	64	0.94
21889--21988	16	6.3	16	79	4	96	52	5	0	43	1.23
22466--22511	24	1.9	24	86	8	67	69	8	0	21	1.15
22469--22504	16	2.2	16	90	9	56	72	5	0	22	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22827--22898	37	1.9	37	97	0	135	23	20	13	41	1.88
31217--31358	73	2.0	73	88	6	218	21	18	4	55	1.59
31359--31398	15	2.7	15	84	11	55	12	22	0	65	1.26
32366--32615	34	7.4	33	85	3	279	42	24	6	26	1.79
32365--32613	102	2.5	100	84	3	320	42	24	6	26	1.79
33011--33099	36	2.5	35	80	7	99	51	8	5	33	1.57
39183--39277	42	2.3	41	85	8	122	36	2	0	61	1.08
39893--39966	2	37.0	2	100	0	148	50	0	0	50	1.00
41090--41165	20	3.8	20	80	0	80	35	13	11	39	1.81
49470--49541	20	3.6	19	75	7	72	40	9	13	36	1.78
49467--49544	40	2.0	39	89	2	120	39	11	12	35	1.80
50117--50666	32	17.2	32	93	0	868	18	18	33	30	1.94
50649--51882	27	45.0	27	90	3	1885	27	14	34	23	1.93
50649--51882	82	15.0	81	91	2	1885	27	14	34	23	1.93
50649--51882	137	9.0	135	91	2	1885	27	14	34	23	1.93
60307--60381	20	3.8	20	80	3	80	40	12	13	34	1.81
60304--60381	40	2.0	39	87	2	111	39	12	12	34	1.82
63915--65783	28	66.8	28	83	4	1718	27	29	16	25	1.97
63900--66023	56	37.7	56	84	5	1875	27	30	16	25	1.97
63900--66023	84	25.2	84	83	4	1875	27	30	16	25	1.97
65744--65822	40	2.0	39	92	2	131	27	31	15	25	1.95
65782--66023	28	8.6	28	91	1	385	29	33	16	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65781--66023	85	2.9	84	92	1	405	29	33	16	21	1.95
66096--66218	48	2.7	46	76	13	126	19	27	20	32	1.97
66590--66665	20	3.8	19	80	3	80	34	11	13	40	1.81
66590--66668	40	2.0	39	85	7	106	34	11	13	40	1.81
70595--70642	23	2.0	24	88	4	71	52	0	2	45	1.12
71029--71084	28	2.0	28	86	3	78	53	0	0	46	1.00
71040--71090	22	2.3	21	83	12	59	54	0	0	45	0.99
71882--71938	26	2.1	27	84	9	73	54	0	0	45	0.99
74384--74429	18	2.3	21	75	10	53	45	0	6	47	1.28
74483--74629	11	13.4	11	66	22	69	30	0	2	66	1.08
74484--74597	17	6.5	17	71	8	68	32	0	0	65	1.04
74481--74629	22	6.8	22	68	21	98	30	0	2	66	1.08
74709--74758	24	2.1	23	89	10	75	24	0	4	72	1.02
75266--75307	21	2.0	20	86	4	57	50	2	0	47	1.14
75323--75380	24	2.3	26	85	5	75	29	3	1	65	1.19
75823--75883	32	2.0	30	84	9	79	55	0	3	40	1.16
75926--75963	17	2.2	18	85	4	51	73	2	0	23	0.95
75923--75986	9	8.2	8	80	16	57	67	1	0	31	1.00
75916--75988	28	2.6	29	80	4	87	67	1	1	30	1.08
76010--76102	27	3.4	27	72	19	77	26	4	3	65	1.26
76037--76077	18	2.3	19	87	8	59	26	4	4	63	1.35
78627--78658	15	2.3	15	89	10	50	50	3	12	34	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79417--79470	16	3.4	15	77	10	54	62	1	3	31	1.23
81492--81523	6	5.7	6	96	3	50	0	9	0	90	0.45
84242--84288	25	1.9	24	86	4	67	48	2	2	46	1.25
86310--86360	6	8.5	6	91	0	57	54	7	13	23	1.65
87519--87565	19	2.4	19	82	10	51	51	8	0	40	1.33
89388--89412	2	12.5	2	100	0	50	52	0	0	48	1.00
96207--96391	79	2.3	79	85	1	237	29	15	29	25	1.96
96343--96419	28	2.8	28	85	0	91	22	19	35	23	1.96
96264--96631	107	3.5	107	72	8	347	29	14	28	27	1.95
96403--96745	51	6.6	52	69	11	180	32	12	25	29	1.92
96292--96738	211	2.1	210	92	1	743	31	13	27	28	1.94
98908--98948	21	2.0	21	100	0	82	26	19	9	43	1.82
98965--99016	13	3.5	13	73	26	50	36	17	13	32	1.89
98973--99035	19	3.7	18	76	24	73	36	17	12	33	1.88
98965--99037	32	2.3	32	97	0	137	35	17	12	34	1.88
99004--99064	19	3.1	19	73	13	61	27	16	13	42	1.85
99835--100407	55	10.0	55	82	11	670	24	19	28	27	1.99
99835--100438	120	5.2	119	82	9	732	24	19	28	27	1.99
100262--100407	29	5.2	29	61	15	83	23	19	29	28	1.98
100354--100536	100	1.8	100	92	0	312	26	19	30	24	1.98
101505--101576	10	6.8	10	77	16	74	1	4	9	84	0.81
101505--101575	12	5.5	12	75	11	61	1	4	9	84	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101506--101570	33	1.9	34	84	9	89	1	4	10	83	0.87
103762--103791	16	1.9	16	93	6	53	56	13	16	13	1.67

Tables:   1

The End!