Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold625
Parameters: 2 7 7 80 10 50 1000
Length:  78406

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
450--502
18
2.9
19
73
18
58
43
0
5
50
1.25
2665--2694
15
2.0
15
100
0
60
33
20
13
33
1.91
6363--6415
7
7.0
8
81
16
60
47
0
0
52
1.00
6363--6405
7
6.0
7
91
8
61
46
0
0
53
1.00
7097--7156
31
1.9
31
89
3
93
46
1
3
48
1.28
7100--7171
31
2.3
31
82
2
81
48
5
2
43
1.40
7289--7322
16
2.2
15
89
5
50
41
0
0
58
0.98
7692--7721
9
3.2
9
95
4
51
10
13
0
76
1.01
9077--9214
68
2.0
70
88
4
208
31
7
12
49
1.67
10439--10488
20
2.5
20
83
0
64
70
6
2
22
1.20
10494--10546
27
2.0
27
85
7
72
47
11
5
35
1.63
13318--13384
35
1.9
35
87
6
100
31
17
7
43
1.77
15778--15858
28
3.0
27
82
8
85
27
12
34
25
1.92
15854--16061
79
2.6
77
75
8
195
36
11
22
29
1.89
18249--18348
1
100.0
1
77
0
83
0
8
5
87
0.68
18249--18348
37
2.7
38
92
3
168
0
8
5
87
0.68
23694--23844
79
1.9
81
84
2
207
38
11
23
26
1.89
23779--23885
52
2.1
52
87
5
155
42
8
20
28
1.81
28904--30289
28
48.6
28
84
6
1051
24
17
31
26
1.97
28920--29767
58
14.5
57
83
7
435
22
18
31
27
1.97
28899--30085
291
4.1
289
81
7
1070
23
17
31
27
1.97
29518--30352
27
30.1
27
87
3
898
26
14
32
25
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29102--30351
55
22.1
55
84
6
949
24
16
32
26
1.96
31635--31678
16
2.8
16
79
10
54
4
15
11
68
1.36
38717--38791
20
3.8
19
78
7
87
40
12
13
34
1.81
38714--38791
40
2.0
39
87
7
113
39
12
12
34
1.82
40150--40204
21
2.6
21
88
0
83
36
14
16
32
1.89
44971--45009
20
1.9
21
84
5
53
41
5
12
41
1.65
49368--49398
16
1.9
16
100
0
62
32
12
19
35
1.90
49413--49489
20
3.8
20
84
6
102
40
11
15
32
1.84
50358--51548
28
41.8
28
85
4
1463
23
17
29
29
1.97
50349--51546
142
8.4
142
86
4
1481
23
17
29
29
1.97
52761--52810
7
7.0
7
77
18
50
2
4
12
82
0.90
68297--68353
22
2.6
21
80
17
71
64
8
8
17
1.46
68298--68347
24
2.2
23
92
7
84
72
8
6
14
1.27
68297--68353
24
2.6
21
80
17
71
64
8
8
17
1.46
69264--69338
20
3.8
20
80
3
80
40
12
13
34
1.81
69261--69338
40
2.0
39
87
2
111
39
12
12
34
1.82
70264--70388
20
5.7
20
68
18
88
43
10
16
30
1.81
74332--74738
217
1.9
216
91
4
669
35
11
9
43
1.74

Tables:   1

The End!