genome.fa.s628.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold628
Parameters: 2 7 7 80 10 50 1000
Length:  76645

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9814--9895	28	2.9	28	80	7	96	26	17	31	24	1.97
9878--10044	51	3.3	51	80	4	203	32	11	26	29	1.92
10027--10102	27	2.8	28	88	6	102	21	21	34	23	1.97
12569--12594	13	2.0	13	100	0	52	38	15	15	30	1.88
12548--12614	33	2.0	33	88	0	98	43	16	14	25	1.86
12634--12688	19	2.9	19	97	0	101	40	14	10	34	1.81
12724--12801	21	3.8	21	83	8	106	32	11	16	39	1.85
12724--12805	41	2.0	40	86	6	112	32	10	17	39	1.84
15871--15925	20	2.8	19	88	5	74	43	14	10	30	1.80
18180--18224	21	2.1	21	84	8	56	53	4	20	22	1.63
20028--20058	15	2.1	15	93	0	53	48	16	22	12	1.80
22117--22165	12	3.9	13	84	10	75	28	16	14	40	1.87
22286--22331	21	2.2	20	81	11	58	32	19	4	43	1.71
24623--24675	20	2.6	21	87	3	72	39	11	18	30	1.86
24714--24739	13	2.0	13	100	0	52	38	15	15	30	1.88
26268--26312	20	2.1	22	88	8	67	35	8	6	48	1.61
27576--27773	29	6.8	29	84	2	243	15	9	13	61	1.56
27576--27777	59	3.4	58	82	4	244	15	9	13	61	1.57
32838--32892	21	2.7	20	77	5	56	30	14	20	34	1.92
34246--34313	28	2.4	28	85	2	91	45	1	0	52	1.09
34187--34402	70	3.1	68	76	15	199	42	2	1	53	1.22
34237--34408	75	2.3	75	80	14	194	41	2	1	54	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34524--34654	65	2.0	65	85	2	174	33	17	3	45	1.64
37127--37157	2	15.5	2	100	0	62	48	0	0	51	1.00
37891--37938	16	2.9	16	90	3	69	62	2	0	35	1.07
37895--37943	16	3.0	16	85	5	62	61	6	0	32	1.21
37887--37943	16	3.5	16	83	4	60	59	7	0	33	1.24
40924--41004	20	3.2	24	73	26	71	46	9	16	27	1.78
40927--41021	30	3.5	28	72	27	98	44	10	16	28	1.81
40908--41021	50	2.3	50	93	0	192	43	9	16	29	1.80
43168--43763	28	21.1	28	87	2	779	25	18	29	27	1.98
45085--45123	19	2.1	18	90	4	60	0	2	12	84	0.72
45089--45132	18	2.4	19	84	3	54	4	2	9	84	0.85
45088--45132	19	2.4	19	85	7	56	4	2	8	84	0.84
51533--51571	20	2.0	19	95	5	69	25	15	12	46	1.81
51594--51646	19	2.7	20	85	2	81	35	13	18	32	1.90
54050--54077	10	2.8	10	100	0	56	42	0	17	39	1.50
59582--59681	28	3.6	28	93	0	155	23	20	35	22	1.96
59670--60006	52	6.4	52	68	17	194	31	12	25	29	1.93
59826--59894	27	2.5	27	88	6	95	23	21	30	24	1.99
59614--60008	212	1.9	212	90	3	634	31	13	26	28	1.94
59885--60003	51	2.3	53	85	7	154	33	11	22	31	1.90
62374--62399	13	2.0	13	100	0	52	38	15	15	30	1.88
62353--62419	33	2.0	33	88	0	98	43	16	14	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62439--62538	19	5.9	18	73	26	103	38	15	12	35	1.84
62461--62517	13	3.9	13	76	24	60	35	15	14	35	1.88
62442--62536	32	3.0	32	98	0	181	36	15	12	34	1.86
62595--62651	21	2.7	21	97	0	105	36	19	10	33	1.86
62662--62694	13	2.6	13	90	4	50	21	0	0	78	0.75
62655--62696	14	3.0	14	78	0	57	23	0	0	76	0.79
63383--64654	55	22.5	56	83	8	1392	24	20	28	26	1.99
63455--63543	29	3.2	29	65	26	82	21	19	31	28	1.97
63383--64618	225	5.5	225	92	3	1881	24	21	28	26	1.99
64446--64535	26	3.3	26	65	14	74	23	17	30	28	1.97
65614--65647	18	1.9	18	94	5	61	0	5	2	91	0.51

Tables:   1

The End!