Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold629
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 578285
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 1 of 5
Found at i:1278 original size:79 final size:79
Alignment explanation
Indices: 1032--1339 Score: 365
Period size: 79 Copynumber: 3.9 Consensus size: 79
1022 TGGAGATGAC
* *
1032 AACGGGGCTGGAGTATCCCTGATTATGGGAAAATC-ATATTTTGAAAATAAAATCGGGGTTGGAG
1 AACGGGGTTGGAGTATCCCTGATTAT-GGAAAATCGATGTTTTGAAAATAAAATCGGGGTTGGAG
*
1096 TATCCCCTCGGAAAT
65 TATCCCCTCGAAAAT
* * *
1111 AACAGGGGTTGGAGTAT-CCTGATTATAGAAAATTGGTGTTTTGAAAATAAAATCGGGG-TGGAG
1 AAC-GGGGTTGGAGTATCCCTGATTATGGAAAATCGATGTTTTGAAAATAAAATCGGGGTTGGAG
1174 TATCCCCTCGAAAAT
65 TATCCCCTCGAAAAT
* * ***
1189 AACGGGGTTGGAGTATCCCTGATTGTGGAAAATCGATGCTTT-AGAAATAAGGCCGGGGTTGGAG
1 AACGGGGTTGGAGTATCCCTGATTATGGAAAATCGATGTTTTGA-AAATAAAATCGGGGTTGGAG
* *
1253 TATCCCCACAAAAAT
65 TATCCCCTCGAAAAT
* * * * * *
1268 AACGGAGTTGGAGTATCCC-GATTGTGAGAAATTGGGTGTTTTGAAAATAAAAATCGGAGTTGGA
1 AACGGGGTTGGAGTATCCCTGATTATG-GAAAATCGATGTTTTGAAAAT-AAAATCGGGGTTGGA
1332 GTATCCCC
64 GTATCCCC
1340 GCTTGTGAAA
Statistics
Matches: 196, Mismatches: 25, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
77 14 0.07
78 66 0.34
79 84 0.43
80 32 0.16
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (79 bp):
AACGGGGTTGGAGTATCCCTGATTATGGAAAATCGATGTTTTGAAAATAAAATCGGGGTTGGAGT
ATCCCCTCGAAAAT
Found at i:1318 original size:157 final size:159
Alignment explanation
Indices: 1032--1339 Score: 412
Period size: 157 Copynumber: 1.9 Consensus size: 159
1022 TGGAGATGAC
* *
1032 AACGGGGCTGGAGTATCCCTGATTATGGGAAAATCATATTTTGAAAATAAAATCGGGGTTGGAGT
1 AACGGGGCTGGAGTATCCCTGATTATGGGAAAATCATATTTAGAAAATAAAACCGGGGTTGGAGT
* ** * *
1097 ATCCCCTCGGAAATAACAGGGGTTGGAGTATCCTGATTATAGAAAATTGGTGTTTTGAAAAT-AA
66 ATCCCCACAAAAATAACAGGAGTTGGAGTATCCCGATTATAGAAAATTGGTGTTTTGAAAATAAA
1161 AATCGG-GGTGGAGTATCCCCTCGAAAAT
131 AATCGGAGGTGGAGTATCCCCTCGAAAAT
* * * **
1189 AACGGGGTTGGAGTATCCCTGATTGT-GGAAAATCGATGCTTTAG-AAATAAGGCCGGGGTTGGA
1 AACGGGGCTGGAGTATCCCTGATTATGGGAAAATC-AT-ATTTAGAAAATAAAACCGGGGTTGGA
*
1252 GTATCCCCACAAAAATAAC-GGAGTTGGAGTATCCCGATTGT-GAGAAATTGGGTGTTTTGAAAA
64 GTATCCCCACAAAAATAACAGGAGTTGGAGTATCCCGATTATAGA-AAATT-GGTGTTTTGAAAA
*
1315 TAAAAATCGGAGTTGGAGTATCCCC
127 TAAAAATCGGAGGTGGAGTATCCCC
1340 GCTTGTGAAA
Statistics
Matches: 131, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
155 2 0.02
156 32 0.24
157 72 0.55
158 12 0.09
159 13 0.10
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (159 bp):
AACGGGGCTGGAGTATCCCTGATTATGGGAAAATCATATTTAGAAAATAAAACCGGGGTTGGAGT
ATCCCCACAAAAATAACAGGAGTTGGAGTATCCCGATTATAGAAAATTGGTGTTTTGAAAATAAA
AATCGGAGGTGGAGTATCCCCTCGAAAAT
Found at i:1337 original size:52 final size:52
Alignment explanation
Indices: 1270--1371 Score: 145
Period size: 52 Copynumber: 2.0 Consensus size: 52
1260 ACAAAAATAA
* *
1270 CGGAGTTGGAGTAT-CCCGATTGTGAGAAATTGGGTGTTTT-GAAAATAAAAAT
1 CGGAGTTGGAGTATCCCCGATTGTGAAAAATT-GGTATTTTAG-AAATAAAAAT
*
1322 CGGAGTTGGAGTATCCCCGCTTGTGAAAAATTGGTATTTTAGAAATAAAA
1 CGGAGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAA
1372 TCGAGGTTAG
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
52 29 0.64
53 16 0.36
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.30
Consensus pattern (52 bp):
CGGAGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAAAT
Found at i:1391 original size:52 final size:53
Alignment explanation
Indices: 1270--1384 Score: 132
Period size: 52 Copynumber: 2.2 Consensus size: 53
1260 ACAAAAATAA
* * *
1270 CGGAGTTGGAGTAT-CCCGATTGTGAGAAATTGGGTGTTTTGAAAATAAAAAT
1 CGGAGTTAGAGTATCCCCGATTGTGAAAAATTGGGTATTTTGAAAATAAAAAT
* *
1322 CGGAGTTGGAGTATCCCCGCTTGTGAAAAATT-GGTATTTT-AGAAAT-AAAAT
1 CGGAGTTAGAGTATCCCCGATTGTGAAAAATTGGGTATTTTGA-AAATAAAAAT
1373 C-GAGGTTAGAGT
1 CGGA-GTTAGAGT
1385 TTTCCCCTCA
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
50 2 0.04
51 14 0.25
52 25 0.45
53 15 0.27
ACGTcount: A:0.32, C:0.10, G:0.28, T:0.30
Consensus pattern (53 bp):
CGGAGTTAGAGTATCCCCGATTGTGAAAAATTGGGTATTTTGAAAATAAAAAT
Found at i:1418 original size:28 final size:28
Alignment explanation
Indices: 1387--1442 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
1377 GTTAGAGTTT
1387 TCCCCTCA-GAAATAACGGGATTGGAGTA
1 TCCCC-CATGAAATAACGGGATTGGAGTA
*
1415 TCCCCGATGAAATAACGGGATTGGAGTA
1 TCCCCCATGAAATAACGGGATTGGAGTA
1443 CTCTCGATTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 1 0.04
28 25 0.96
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (28 bp):
TCCCCCATGAAATAACGGGATTGGAGTA
Found at i:3561 original size:13 final size:13
Alignment explanation
Indices: 3543--3572 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
3533 GTAAACCCAG
3543 AATGTATCGATAC
1 AATGTATCGATAC
3556 AATGTATCGATAC
1 AATGTATCGATAC
3569 AATG
1 AATG
3573 AATAATGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:4438 original size:13 final size:13
Alignment explanation
Indices: 4420--4457 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
4410 CATAAAATAT
4420 TGTATCGATACAA
1 TGTATCGATACAA
4433 TGTATCGATACAA
1 TGTATCGATACAA
4446 TGTATCGATACA
1 TGTATCGATACA
4458 TAAGTTTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4516 original size:13 final size:13
Alignment explanation
Indices: 4498--4522 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4488 TGCCAAAAAA
4498 TGTATCGATACAT
1 TGTATCGATACAT
4511 TGTATCGATACA
1 TGTATCGATACA
4523 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4593 original size:52 final size:52
Alignment explanation
Indices: 4531--4659 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
4521 CACTGATCTT
* *
4531 TGTATTGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCAAGATGTATCGATACACTATAAAA
*
4583 TGTATCGATACATGCAGGCAAATTTGCCAAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCAAGATGTATCGATACACTATAAAA
4635 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
4660 TCATATTTCG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCAAGATGTATCGATACACTATAAAA
Found at i:8689 original size:13 final size:13
Alignment explanation
Indices: 8671--8696 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8661 CAATTTTTTG
8671 TGTATCGATACAT
1 TGTATCGATACAT
8684 TGTATCGATACAT
1 TGTATCGATACAT
8697 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:10818 original size:13 final size:13
Alignment explanation
Indices: 10800--10825 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10790 CAATTTTTTG
10800 TGTATCGATACAT
1 TGTATCGATACAT
10813 TGTATCGATACAT
1 TGTATCGATACAT
10826 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:10911 original size:20 final size:20
Alignment explanation
Indices: 10886--10958 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
10876 ATCTTTTTTT
10886 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
10906 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
10927 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
10947 ATGTATCGATAC
1 ATGTATCGATAC
10959 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:10937 original size:41 final size:42
Alignment explanation
Indices: 10864--10958 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 42
10854 CTGCCATGAA
*
10864 ATGTATCGATACATCTTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
10906 ATGTATCGATACATC-TTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
10947 ATGTATCGATAC
1 ATGTATCGATAC
10959 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 37 0.71
42 15 0.29
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (42 bp):
ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
Found at i:13421 original size:13 final size:13
Alignment explanation
Indices: 13403--13441 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
13393 ATAAACACCC
*
13403 TGTATCGATACAG
1 TGTATCGATACAA
13416 TGTATCGATACAA
1 TGTATCGATACAA
13429 TGTATCGATACAA
1 TGTATCGATACAA
13442 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:13452 original size:20 final size:20
Alignment explanation
Indices: 13427--13505 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
13417 GTATCGATAC
13427 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
13447 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
13472 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
13492 CATGTATCGATACA
1 AATGTATCGATACA
13506 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:15538 original size:15 final size:15
Alignment explanation
Indices: 15518--15548 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15508 ATTTCGTTTG
*
15518 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
15533 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
15548 G
1 G
15549 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:17381 original size:21 final size:21
Alignment explanation
Indices: 17352--17396 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
17342 AAGTTTTCAT
*
17352 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
17372 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
17394 TTT
1 TTT
17397 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:19608 original size:13 final size:13
Alignment explanation
Indices: 19590--19615 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
19580 CAATTTTTTG
19590 TGTATCGATACAT
1 TGTATCGATACAT
19603 TGTATCGATACAT
1 TGTATCGATACAT
19616 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:19702 original size:20 final size:20
Alignment explanation
Indices: 19677--19747 Score: 88
Period size: 20 Copynumber: 3.5 Consensus size: 20
19667 TCTTTTTTTT
19677 TGTATCGATACATTGCAACA
1 TGTATCGATACATTGCAACA
* ****
19697 TGTATCGATGCATCTTTTTCA
1 TGTATCGATACAT-TGCAACA
19718 TGTATCGATACATTGCAACA
1 TGTATCGATACATTGCAACA
19738 TGTATCGATA
1 TGTATCGATA
19748 ATTTGAATTG
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
20 25 0.62
21 15 0.38
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (20 bp):
TGTATCGATACATTGCAACA
Found at i:19727 original size:41 final size:42
Alignment explanation
Indices: 19654--19747 Score: 154
Period size: 41 Copynumber: 2.3 Consensus size: 42
19644 CTGCCAAGAA
**
19654 ATGTATCGATACATCTTTTTTTTTGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
*
19696 ATGTATCGATGCATC-TTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
19737 ATGTATCGATA
1 ATGTATCGATA
19748 ATTTGAATTG
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
41 34 0.71
42 14 0.29
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (42 bp):
ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
Found at i:21249 original size:13 final size:13
Alignment explanation
Indices: 21231--21281 Score: 102
Period size: 13 Copynumber: 3.9 Consensus size: 13
21221 ATAATCACCC
21231 TGTATCGATACAA
1 TGTATCGATACAA
21244 TGTATCGATACAA
1 TGTATCGATACAA
21257 TGTATCGATACAA
1 TGTATCGATACAA
21270 TGTATCGATACA
1 TGTATCGATACA
21282 TTGAATTTCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:23361 original size:15 final size:15
Alignment explanation
Indices: 23341--23371 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
23331 ATTTCGTTTG
*
23341 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
23356 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
23371 G
1 G
23372 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:25204 original size:21 final size:21
Alignment explanation
Indices: 25175--25219 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
25165 AAGTTTTCAT
*
25175 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
25195 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
25217 TTT
1 TTT
25220 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:38042 original size:17 final size:15
Alignment explanation
Indices: 38024--38130 Score: 90
Period size: 15 Copynumber: 6.9 Consensus size: 15
38014 CGTCCTCCAT
38024 AAAAAAAACAAATAAA
1 AAAAAAAACAAA-AAA
* **
38040 TAAAAAAAGGAAAAA
1 AAAAAAAACAAAAAA
* * *
38055 AAGAGAAGCAATAAACA
1 AAAAAAAACAA-AAA-A
*
38072 AAAAAAACCAAAAAA
1 AAAAAAAACAAAAAA
38087 CAAAAAAAAC-AAAAA
1 -AAAAAAAACAAAAAA
* *
38102 CAAAAAAACAAACAA
1 AAAAAAAACAAAAAA
38117 AAAAAAAACAAAAA
1 AAAAAAAACAAAAA
38131 GGGTCCGGAT
Statistics
Matches: 70, Mismatches: 17, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
14 8 0.11
15 30 0.43
16 23 0.33
17 9 0.13
ACGTcount: A:0.82, C:0.10, G:0.05, T:0.03
Consensus pattern (15 bp):
AAAAAAAACAAAAAA
Found at i:38086 original size:8 final size:8
Alignment explanation
Indices: 38067--38130 Score: 78
Period size: 8 Copynumber: 8.1 Consensus size: 8
38057 GAGAAGCAAT
38067 AAACAAAAA
1 AAAC-AAAA
*
38076 AAACCAAA
1 AAACAAAA
38084 AAACAAAA
1 AAACAAAA
*
38092 AAA-ACAA
1 AAACAAAA
38099 AAACAAAA
1 AAACAAAA
*
38107 AAACAAAC
1 AAACAAAA
38115 AAA-AAAA
1 AAACAAAA
38122 AAACAAAA
1 AAACAAAA
38130 A
1 A
38131 GGGTCCGGAT
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
7 12 0.26
8 31 0.66
9 4 0.09
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (8 bp):
AAACAAAA
Found at i:38100 original size:23 final size:23
Alignment explanation
Indices: 38071--38130 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
38061 AGCAATAAAC
38071 AAAAAAAACCAAAAAACAAA-AA
1 AAAAAAAACCAAAAAACAAACAA
*
38093 AAACAAAAACAAAAAAACAAACAA
1 AAA-AAAAACCAAAAAACAAACAA
38117 AAAAAAAA-CAAAAA
1 AAAAAAAACCAAAAA
38131 GGGTCCGGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
22 8 0.24
23 21 0.62
24 5 0.15
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (23 bp):
AAAAAAAACCAAAAAACAAACAA
Found at i:39660 original size:30 final size:30
Alignment explanation
Indices: 39568--40109 Score: 746
Period size: 30 Copynumber: 18.3 Consensus size: 30
39558 TCACCCTTCA
*
39568 AAAGCCCACAAGTCAGTGGCA-TCTTTTCC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
* * *
39597 AAAGCCCACAAGTCAGTGGTA-TCTTTTCA
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
39626 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
*
39656 AAAGCCCACAAGCCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
*
39686 AAAGCCCACAAGCCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
* * *
39716 AAAGCCCACAAGTCAGTGGTA-TCTTTTCA
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
39745 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
*
39775 AAAGCCCACAAGCCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
39805 AAAGCCCACAAG-CTAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTC-AGTGGCACCCTTTTCC
* *
39835 AAAGCCCACAAGTCAGTGGTA-TCTTTTCC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
*
39864 AAAGCCCACAAGCCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
*
39894 AAAGCCCACAAG-CTAGTGGCACCTTTTTCC
1 AAAGCCCACAAGTC-AGTGGCACCCTTTTCC
** * *
39924 AAAGCCCACAAGTCAGTGATA-TCTTTTCA
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
*
39953 AAAGCCCACAAGCCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
*
39983 AAAGCCCACAAGGCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
*
40013 AAAGCCCACAAGCCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
* *
40043 AAAGCCCACAAGTCAGTGGTA-TCTTTT-C
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
* * *
40071 ACAAGCCCACAAGTTAGTGGCAACC--TTCA
1 A-AAGCCCACAAGTCAGTGGCACCCTTTTCC
40100 AAAGCCCACA
1 AAAGCCCACA
40110 TAAGTTGGTG
Statistics
Matches: 463, Mismatches: 39, Indels: 23
0.88 0.07 0.04
Matches are distributed among these distances:
28 13 0.03
29 148 0.32
30 300 0.65
31 2 0.00
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.21
Consensus pattern (30 bp):
AAAGCCCACAAGTCAGTGGCACCCTTTTCC
Found at i:39703 original size:89 final size:89
Alignment explanation
Indices: 39568--40109 Score: 758
Period size: 89 Copynumber: 6.1 Consensus size: 89
39558 TCACCCTTCA
* * * * *
39568 AAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGTA-TCTTTTCAAAAGCC
1 AAAGCCCACAAGTCAGTGGCACCTTTTCCAAAGCCCACAAGCCAGTGGCACCCTTTTCCAAAGCC
39632 CACAAGTCAGTGGCACCCTTTTCC
66 CACAAGTCAGTGGCACCCTTTTCC
*
39656 AAAGCCCACAAGCCAGTGGCACCCTTTTCCAAAGCCCACAAGCCAGTGGCACCCTTTTCCAAAGC
1 AAAGCCCACAAGTCAGTGGCA-CCTTTTCCAAAGCCCACAAGCCAGTGGCACCCTTTTCCAAAGC
* * *
39721 CCACAAGTCAGTGGTA-TCTTTTCA
65 CCACAAGTCAGTGGCACCCTTTTCC
39745 AAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGCCAGTGGCACCCTTTTCCAAAGC
1 AAAGCCCACAAGTCAGTGGCA-CCTTTTCCAAAGCCCACAAGCCAGTGGCACCCTTTTCCAAAGC
39810 CCACAAG-CTAGTGGCACCCTTTTCC
65 CCACAAGTC-AGTGGCACCCTTTTCC
* *
39835 AAAGCCCACAAGTCAGTGGTATCTTTTCCAAAGCCCACAAGCCAGTGGCACCCTTTTCCAAAGCC
1 AAAGCCCACAAGTCAGTGGCACCTTTTCCAAAGCCCACAAGCCAGTGGCACCCTTTTCCAAAGCC
*
39900 CACAAG-CTAGTGGCACCTTTTTCC
66 CACAAGTC-AGTGGCACCCTTTTCC
** * *
39924 AAAGCCCACAAGTCAGTGATATCTTTTCAAAAGCCCACAAGCCAGTGGCACCCTTTTCCAAAGCC
1 AAAGCCCACAAGTCAGTGGCACCTTTTCCAAAGCCCACAAGCCAGTGGCACCCTTTTCCAAAGCC
*
39989 CACAAGGCAGTGGCACCCTTTTCC
66 CACAAGTCAGTGGCACCCTTTTCC
* * * *
40013 AAAGCCCACAAGCCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGTA-TCTTTT-CACAAG
1 AAAGCCCACAAGTCAGTGGCA-CCTTTTCCAAAGCCCACAAGCCAGTGGCACCCTTTTCCA-AAG
* * *
40076 CCCACAAGTTAGTGGCAACC--TTCA
64 CCCACAAGTCAGTGGCACCCTTTTCC
40100 AAAGCCCACA
1 AAAGCCCACA
40110 TAAGTTGGTG
Statistics
Matches: 416, Mismatches: 31, Indels: 15
0.90 0.07 0.03
Matches are distributed among these distances:
87 13 0.03
88 23 0.06
89 302 0.73
90 78 0.19
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.21
Consensus pattern (89 bp):
AAAGCCCACAAGTCAGTGGCACCTTTTCCAAAGCCCACAAGCCAGTGGCACCCTTTTCCAAAGCC
CACAAGTCAGTGGCACCCTTTTCC
Found at i:40122 original size:119 final size:118
Alignment explanation
Indices: 39568--40109 Score: 838
Period size: 119 Copynumber: 4.6 Consensus size: 118
39558 TCACCCTTCA
39568 AAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGTATCTTTTCAAAAGCCC
1 AAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGTATCTTTTCAAAAGCCC
39633 ACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGCCAGTGGCACCCTTTTCC
66 ACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGCCAGTGGCACCCTTTTCC
* *
39686 AAAGCCCACAAGCCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGTATCTTTTCAAAAGCC
1 AAAGCCCACAAGTCAGTGGCA-TCTTTTCCAAAGCCCACAAGTCAGTGGTATCTTTTCAAAAGCC
39751 CACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGCCAGTGGCACCCTTTTCC
65 CACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGCCAGTGGCACCCTTTTCC
* *
39805 AAAGCCCACAAG-CTAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGTATCTTTTCCAAAGC
1 AAAGCCCACAAGTC-AGTGGCA-TCTTTTCCAAAGCCCACAAGTCAGTGGTATCTTTTCAAAAGC
* * *
39869 CCACAAGCCAGTGGCACCCTTTTCCAAAGCCCACAAGCTAGTGGCACCTTTTTCC
64 CCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGCCAGTGGCACCCTTTTCC
** * * * * *
39924 AAAGCCCACAAGTCAGTGATATCTTTTCAAAAGCCCACAAGCCAGTGGCACCCTTTTCCAAAGCC
1 AAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGTA-TCTTTTCAAAAGCC
*
39989 CACAAGGCAGTGGCACCCTTTTCCAAAGCCCACAAGCCAGTGGCACCCTTTTCC
65 CACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGCCAGTGGCACCCTTTTCC
* * * * *
40043 AAAGCCCACAAGTCAGTGGTATCTTTT-CACAAGCCCACAAGTTAGTGGCAAC-CTTCAAAAGCC
1 AAAGCCCACAAGTCAGTGGCATCTTTTCCA-AAGCCCACAAGTCAGTGGTATCTTTTCAAAAGCC
40106 CACA
65 CACA
40110 TAAGTTGGTG
Statistics
Matches: 396, Mismatches: 23, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
117 13 0.03
118 48 0.12
119 334 0.84
120 1 0.00
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.21
Consensus pattern (118 bp):
AAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGTATCTTTTCAAAAGCCC
ACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGCCAGTGGCACCCTTTTCC
Found at i:40183 original size:43 final size:43
Alignment explanation
Indices: 40132--40596 Score: 336
Period size: 43 Copynumber: 10.0 Consensus size: 43
40122 ATCTTCCTTT
* * *
40132 AAGTCCAATGTAGCTGGCCATGAATCAGCACATTGGCACCTCC
1 AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTCC
*
40175 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTC
1 AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-TC--C
* * * *
40221 TTTAAGTCCAATGTAGCTGGCCTTGAATCAACACATTGGCACCTCT
1 ---AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTCC
* *
40267 AAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACCATCATC
1 AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-TC--C
* * * *
40313 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTCGCAACTCC
1 ---AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTCC
*
40359 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTCATC
1 AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CCTC--C
* * * * * **
40405 TTTTGAGCCCAATGTCGCTGGCCTTGAATCAACACATTGGCATCTTT
1 ----AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTCC
* *
40452 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
1 AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC----TC--C
* * * *
40501 TTTAAGTCCAATATCGCTCGCCTTGAATCAGCATATTGGCGTCTTTGTCATCTTT
1 ---AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGC-AC-----C-TC--C
*
40556 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCT
40597 TCATCTTTAA
Statistics
Matches: 338, Mismatches: 50, Indels: 66
0.74 0.11 0.15
Matches are distributed among these distances:
43 140 0.41
44 7 0.02
45 1 0.00
46 4 0.01
47 1 0.00
48 4 0.01
49 72 0.21
50 33 0.10
51 1 0.00
52 70 0.21
53 1 0.00
55 3 0.01
58 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (43 bp):
AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTCC
Found at i:40285 original size:92 final size:92
Alignment explanation
Indices: 40128--40606 Score: 625
Period size: 92 Copynumber: 5.1 Consensus size: 92
40118 TGGCATCTTC
* *
40128 CTTTAAGTCCAATGTAGCTGGCCATGAATCAGCACATTGGCACCTCCAAGTCCAATATCGCTGGC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGTCCAATATCGCTGGC
*
40193 CTTGAATCAGCATATTGGCACCTTCTT
66 CTTGAATCAGCATATTGGCACCTTCAT
*
40220 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAACACATTGGCACCTCTAAGTCCAATATCGCTGGC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGTCCAATATCGCTGGC
* *
40285 CTTGAATCAACATATTGGCACCATCAT
66 CTTGAATCAGCATATTGGCACCTTCAT
* * *
40312 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTCGCAACTCCAAGTCCAATATCGCTGGC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGTCCAATATCGCTGGC
*
40377 CTTGAATCAGCATATTGGCACCCTCAT
66 CTTGAATCAGCATATTGGCACCTTCAT
* * * * * *
40404 CTTTTGAGCCCAATGTCGCTGGCCTTGAATCAACACATTGGCATCTTTAAGTCCAATATCGCTGG
1 C-TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGTCCAATATCGCTGG
*
40469 CCTTGAATCAGCATATTGGCGCCTTTGTCAT
65 CCTTGAATCAGCATATTGGCACC--T-TCAT
* * * * *
40500 CTTTAAGTCCAATATCGCTCGCCTTGAATCAGCATATTGGCGTCTTTGTCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC-AC-----C-TC--TAAGTCCAAT
* *
40565 GTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
57 ATCGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
40601 CTTTAA
1 CTTTAA
40607 CATTCCTAAG
Statistics
Matches: 340, Mismatches: 34, Indels: 17
0.87 0.09 0.04
Matches are distributed among these distances:
92 173 0.51
93 77 0.23
95 34 0.10
96 5 0.01
101 11 0.03
102 2 0.01
104 38 0.11
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (92 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGTCCAATATCGCTGGC
CTTGAATCAGCATATTGGCACCTTCAT
Found at i:40524 original size:52 final size:52
Alignment explanation
Indices: 40445--40597 Score: 261
Period size: 52 Copynumber: 2.9 Consensus size: 52
40435 AACACATTGG
40445 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGT
1 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGT
* *
40497 CATCTTTAAGTCCAATATCGCTCGCCTTGAATCAGCATATTGGCGTCTTTGT
1 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGT
* * *
40549 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT
1 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTT
40598 CATCTTTAAC
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 94 1.00
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (52 bp):
CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGT
Found at i:41437 original size:19 final size:19
Alignment explanation
Indices: 41413--41462 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
41403 ATTGATACAA
41413 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
*
41432 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAGTGT
*
41451 TGTATCCATACA
1 TGTATCGATACA
41463 ATGTAAGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:41442 original size:32 final size:33
Alignment explanation
Indices: 41380--41443 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
41370 TTCAACGATT
*
41380 TGTATCGATACATAAAATATTGTATTGATACAA
1 TGTATCGATACATAAAATATTGTATCGATACAA
* *
41413 TGTATCGATACAT-AAGTGTTGTATCGATACA
1 TGTATCGATACATAAAATATTGTATCGATACA
41444 TAAGTTTTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.54
33 13 0.46
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (33 bp):
TGTATCGATACATAAAATATTGTATCGATACAA
Found at i:41502 original size:13 final size:13
Alignment explanation
Indices: 41484--41508 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
41474 TGCTAAAAAA
41484 TGTATCGATACAT
1 TGTATCGATACAT
41497 TGTATCGATACA
1 TGTATCGATACA
41509 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:41575 original size:52 final size:52
Alignment explanation
Indices: 41517--41645 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
41507 CACTGATCTT
41517 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
41569 TGTATCGATACATGCAGGCAAATTTGCCTAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
41621 TGTATCGATACATGTAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
41646 TCATATTTCG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:44794 original size:41 final size:41
Alignment explanation
Indices: 44695--44796 Score: 118
Period size: 41 Copynumber: 2.5 Consensus size: 41
44685 GTCCCACTTT
* * *
44695 TTGAGGACAAAGG-AAAAGAGAATGAAATAGGTCTTGCTCC
1 TTGAGGACAAAGGAAAAAGAAAAGGAAATAGGTCCTGCTCC
* * *
44735 TTTAGGACAAAGGAAAAAAGAAAAGGAAA-ATGTCCTGCTTC
1 TTGAGGACAAAGG-AAAAAGAAAAGGAAATAGGTCCTGCTCC
44776 TTGAGGACAAAGTGAAAAAGA
1 TTGAGGACAAAG-GAAAAAGA
44797 GTACGTCCTA
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
40 12 0.23
41 27 0.52
42 13 0.25
ACGTcount: A:0.45, C:0.11, G:0.25, T:0.19
Consensus pattern (41 bp):
TTGAGGACAAAGGAAAAAGAAAAGGAAATAGGTCCTGCTCC
Found at i:44936 original size:45 final size:45
Alignment explanation
Indices: 44822--44960 Score: 155
Period size: 42 Copynumber: 3.2 Consensus size: 45
44812 CGAGGATAAA
* *
44822 GGAAAAAAGGAAAATGAAA-TGCAACCTGCTCTTTGAGGACAAAA-
1 GGAAAAGAGGAAAAT-AAAGTGCATCCTGCTCTTTGAGGACAAAAG
44866 -G-AAAGAGGAAAATAAAGTGCATCCTGCTCTTTGAGGACAAAAG
1 GGAAAAGAGGAAAATAAAGTGCATCCTGCTCTTTGAGGACAAAAG
* * **
44909 GGAAAAGAAGG-GAATGAAGTGTGTCCTGCTCTTTGAGGAC-AAAG
1 GGAAAAG-AGGAAAATAAAGTGCATCCTGCTCTTTGAGGACAAAAG
44953 GAGAAAAG
1 G-GAAAAG
44961 GAAAAGGCAT
Statistics
Matches: 83, Mismatches: 6, Indels: 11
0.83 0.06 0.11
Matches are distributed among these distances:
41 3 0.04
42 35 0.42
43 1 0.01
44 6 0.07
45 35 0.42
46 3 0.04
ACGTcount: A:0.42, C:0.12, G:0.28, T:0.17
Consensus pattern (45 bp):
GGAAAAGAGGAAAATAAAGTGCATCCTGCTCTTTGAGGACAAAAG
Found at i:45267 original size:60 final size:61
Alignment explanation
Indices: 44957--45632 Score: 731
Period size: 60 Copynumber: 11.1 Consensus size: 61
44947 ACAAAGGAGA
* * ** * * *
44957 AAAGGAAAAGGCATCCTGCTCTTTAAGGACTAAAAAGTGCCACCAACTCGTGTAGGCTTTG
1 AAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTG
* * * ** * **
45018 AAAAGAAAAAGACGTCGTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGAACTTTG
1 -AAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTG
* * *
45080 AGAAGAAAAAGGTGTCCTGCCCTTTGAGGACT--AAGATGTGCCACCAACTTGTGTGGGCTTTG
1 A-AAGGAAAAGGCGTCCTGCTCTTTGAGGACTGGAAG--GTGCCACCAACTTGTGTGGGCTTTG
* * * ** *
45142 AAAAGAAAAAGGTGTCCTACTCTTTGAGGACTAAAAAAGTGCCACCAACTTGTGTGGGCTTTG
1 -AAAGGAAAAGGCGTCCTGCTCTTTGAGGACT-GGAAGGTGCCACCAACTTGTGTGGGCTTTG
* * *
45205 AAAGGCAAAGGCATCTTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTG
1 AAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTG
** * *
45265 AAAGGTGAAGGCGTCCTGCTCCTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTA
1 AAAGGAAAAGGCGTCCTGCTCTTTGAGGACT-GGAAGGTGCCACCAACTTGTGTGGGCTTTG
* * * * *
45326 AAAGGAGAAGGCATCCTGCTCTTTGAGGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTTT
1 AAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTG
** * * *
45386 AAAGGCGAATGTGTCCTGCTCTTTGGGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTG
1 AAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTG
** *
45446 AAAGGTGAAGGCATCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTG
1 AAAGGAAAAGGCGTCCTGCTCTTTGAGGACT-GGAAGGTGCCACCAACTTGTGTGGGCTTTG
** * *
45507 AAAGGTGAAGGCGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTCGTGTGGGCTTTA
1 AAAGGAAAAGGCGTCCTGCTCTTTGAGGACT-GGAAGGTGCCACCAACTTGTGTGGGCTTTG
* * * * *
45568 AAAGGAGAAGGCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAGCTTGGGTGGGCTTTG
1 AAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTG
45628 AAAGG
1 AAAGG
45633 CATCCTGCTT
Statistics
Matches: 540, Mismatches: 61, Indels: 28
0.86 0.10 0.04
Matches are distributed among these distances:
59 5 0.01
60 183 0.34
61 165 0.31
62 159 0.29
63 26 0.05
65 2 0.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (61 bp):
AAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTG
Found at i:45330 original size:121 final size:119
Alignment explanation
Indices: 44956--45632 Score: 766
Period size: 121 Copynumber: 5.5 Consensus size: 119
44946 GACAAAGGAG
* * * * *
44956 AAAAGGAAAAGGCATCCTGCTCTTTAAGGACTAAAAAGTGCCACCAACTCGTGTAGGCTTTGAAA
1 AAAAGG-AAAGGCATCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTG-AA
* * * * * * **
45021 AGAAAAAGACGTCGTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGAACTTT
63 AGGAGAAGGCGTCCTGCTCTTTGAGGACTAGAA-GTGCCACCAACTTGTGTGGGCTTT
* * ** *
45079 GAGAAGAAAAAGGTGTCCTGCCCTTTGAGGACT-AAGATGTGCCACCAACTTGTGTGGGCTTTGA
1 -AAAAG-GAAAGGCATCCTGCTCTTTGAGGACTGAAG--GTGCCACCAACTTGTGTGGGCTTTG-
* * * * *
45143 AAAGAAAAAGGTGTCCTACTCTTTGAGGACTAAAAAAGTGCCACCAACTTGTGTGGGCTTT
61 AAAGGAGAAGGCGTCCTGCTCTTTGAGGACT--AGAAGTGCCACCAACTTGTGTGGGCTTT
* *
45204 GAAAGGCAAAGGCATCTTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
1 AAAAGG-AAAGGCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
* * *
45269 GTGAAGGCGTCCTGCTCCTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT
65 GAGAAGGCGTCCTGCTCTTTGAGGACT-AGAAGTGCCACCAACTTGTGTGGGCTTT
* * *
45325 AAAAGGAGAAGGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAGCTTGTGTGGGCTTTTAAAG
1 AAAAGGA-AAGGCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
* * * *
45390 GCGAATGTGTCCTGCTCTTTGGGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTT
65 GAGAAGGCGTCCTGCTCTTTGAGGACTAGAA-GTGCCACCAACTTGTGTGGGCTTT
* *
45445 GAAAGGTGAAGGCATCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTGAA
1 AAAAGG-AAAGGCATCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTGAA
* * *
45509 AGGTGAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTCGTGTGGGCTTT
63 AGGAGAAGGCGTCCTGCTCTTTGAGGACT-AGAAGTGCCACCAACTTGTGTGGGCTTT
* * *
45567 AAAAGGAGAAGGCATCCTGCTCTTTGAGGACTGAAAGTGCCACCAGCTTGGGTGGGCTTTGAAAG
1 AAAAGGA-AAGGCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
45632 G
65 G
45633 CATCCTGCTT
Statistics
Matches: 481, Mismatches: 56, Indels: 35
0.84 0.10 0.06
Matches are distributed among these distances:
119 3 0.01
120 57 0.12
121 184 0.38
122 81 0.17
123 28 0.06
124 100 0.21
125 24 0.05
126 4 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (119 bp):
AAAAGGAAAGGCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
AGAAGGCGTCCTGCTCTTTGAGGACTAGAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:56064 original size:52 final size:52
Alignment explanation
Indices: 55979--56103 Score: 207
Period size: 52 Copynumber: 2.4 Consensus size: 52
55969 ATATGAAAAG
*
55979 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCTTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
56031 TTGCCTGCATGTATCGATACATTATAA-AATGTATCGATACATCTGGGCAAAT
1 TTGCTTGCATGTATCGATACATT-TAATAATGTATCGATACATCTGGGCAAAT
*
56083 TTGCTTGCATGTATAGATACA
1 TTGCTTGCATGTATCGATACA
56104 AAGATCAGTG
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
52 65 0.96
53 3 0.04
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.35
Consensus pattern (52 bp):
TTGCTTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:56116 original size:52 final size:50
Alignment explanation
Indices: 55979--56123 Score: 184
Period size: 52 Copynumber: 2.8 Consensus size: 50
55969 ATATGAAAAG
*
55979 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCTTGCATGTATCGATACA--AAATAGTGTATCGATACATCTGGGCAAAT
* *
56031 TTGCCTGCATGTATCGATACATTATAA-AATGTATCGATACATCTGGGCAAAT
1 TTGCTTGCATGTATCGATACA--A-AATAGTGTATCGATACATCTGGGCAAAT
*
56083 TTGCTTGCATGTATAGATACAAAGATCAGTGTATCGATACA
1 TTGCTTGCATGTATCGATACAAA-AT-AGTGTATCGATACA
56124 ATGTATCGAT
Statistics
Matches: 83, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
49 1 0.01
50 2 0.02
52 78 0.94
53 2 0.02
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.34
Consensus pattern (50 bp):
TTGCTTGCATGTATCGATACAAAATAGTGTATCGATACATCTGGGCAAAT
Found at i:56130 original size:13 final size:13
Alignment explanation
Indices: 56112--56136 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
56102 CAAAGATCAG
56112 TGTATCGATACAA
1 TGTATCGATACAA
56125 TGTATCGATACA
1 TGTATCGATACA
56137 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:56214 original size:33 final size:33
Alignment explanation
Indices: 56177--56243 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
56167 AGTAGCTTAA
56177 ATTGTATAGATACAAAAAAATATGTATCGATAC
1 ATTGTATAGATACAAAAAAATATGTATCGATAC
* * ***
56210 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATAGATACAAAAAAATATGTATCGATAC
56243 A
1 A
56244 AATCGTTGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.42, C:0.13, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATAGATACAAAAAAATATGTATCGATAC
Found at i:56217 original size:13 final size:13
Alignment explanation
Indices: 56199--56223 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
56189 CAAAAAAATA
56199 TGTATCGATACAT
1 TGTATCGATACAT
56212 TGTATCGATACA
1 TGTATCGATACA
56224 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:60673 original size:4 final size:4
Alignment explanation
Indices: 60666--60692 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
60656 ACAAACAAAC
60666 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
60693 CACCTCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:62932 original size:51 final size:51
Alignment explanation
Indices: 62838--62953 Score: 137
Period size: 51 Copynumber: 2.3 Consensus size: 51
62828 AAAATAACAG
* * *
62838 GGTTGGAGTATCCCTGATTATAGAAAATTAGTGTTTTGAAAATAAAATCGA
1 GGTTGGAGTATCCCTGATTATAGAAAATGAGTGTTTAGAAAATAAAACCGA
* * **
62889 GGTTGGAGTATCCCTGATTGTGGAAAATCGA-TGCTTTAG-AAATAAGGCCGA
1 GGTTGGAGTATCCCTGATTATAGAAAAT-GAGTG-TTTAGAAAATAAAACCGA
62940 GGTTGGAGTATCCC
1 GGTTGGAGTATCCC
62954 CGCAAAAATA
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
51 51 0.91
52 5 0.09
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCTGATTATAGAAAATGAGTGTTTAGAAAATAAAACCGA
Found at i:62944 original size:130 final size:129
Alignment explanation
Indices: 62782--63114 Score: 372
Period size: 130 Copynumber: 2.6 Consensus size: 129
62772 CTGATTATGG
* * *
62782 AAAATCAGTATTTT-GAAAATAAAATCGTGGTTGAAGTATCCCCTCGAAAATAACAGGGTTGGAG
1 AAAATC-GTATTTTAG-AAATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAAC-GGGTTGGAG
* *
62846 TATCCCTGATTAT-AGAAAATTAGTGTTTTGAAAATAAAATC-GAGGTTGGAGTATCCCTGA-TT
63 TATCCCCGATTATGAG-AAATTAGTGTTTTGAAAATAAAATCGGA-GTTGGAGTATCCC-CACTT
*
62908 GTG-G
125 GTGAA
** * * *
62912 AAAATCG-ATGCTTTAGAAATAAGGCCGAGGTTGGAGTATCCCCGCAAAAATAACGGGGTTAGAG
1 AAAATCGTAT--TTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAAC-GGGTTGGAG
* * *
62976 TATCCCCGATTGTGAGAAATTGGTGTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCACTTGTG
63 TATCCCCGATTATGAGAAATTAGTGTTTTGAAAATAAAATCGGAGTTGGAGTATCCCCACTTGTG
63041 AA
128 AA
* * * *
63043 AAAATGGTATTTTAGAAATAAAATCGACGTTGGAGTATCCCCTCGGAAATAACGGGATTGGAGTA
1 AAAATCGTATTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAACGGG-TTGGAGTA
63108 TCCCCGA
65 TCCCCGA
63115 ATGTCTCGGG
Statistics
Matches: 170, Mismatches: 24, Indels: 18
0.80 0.11 0.08
Matches are distributed among these distances:
128 2 0.01
129 5 0.03
130 150 0.88
131 11 0.06
132 2 0.01
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (129 bp):
AAAATCGTATTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAACGGGTTGGAGTAT
CCCCGATTATGAGAAATTAGTGTTTTGAAAATAAAATCGGAGTTGGAGTATCCCCACTTGTGAA
Found at i:63032 original size:51 final size:51
Alignment explanation
Indices: 62973--63084 Score: 156
Period size: 51 Copynumber: 2.2 Consensus size: 51
62963 AACGGGGTTA
* * * *
62973 GAGTATCCCCGA-TTGTGAGAAATTGGTGTTTTGGAAATAAAATCGGA-GTTG
1 GAGTATCCCC-ACTTGTGAAAAAATGGTATTTTAGAAATAAAATC-GACGTTG
63024 GAGTATCCCCACTTGTGAAAAAATGGTATTTTAGAAATAAAATCGACGTTG
1 GAGTATCCCCACTTGTGAAAAAATGGTATTTTAGAAATAAAATCGACGTTG
63075 GAGTATCCCC
1 GAGTATCCCC
63085 TCGGAAATAA
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
50 3 0.05
51 52 0.95
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.29
Consensus pattern (51 bp):
GAGTATCCCCACTTGTGAAAAAATGGTATTTTAGAAATAAAATCGACGTTG
Found at i:65367 original size:20 final size:20
Alignment explanation
Indices: 65342--65456 Score: 196
Period size: 20 Copynumber: 5.8 Consensus size: 20
65332 GTAAATCCAG
*
65342 AATGTATCGATACAATGAGC
1 AATGTATCGATACAATGAAC
65362 AATGTATCGATACAATGCAA-
1 AATGTATCGATACAATG-AAC
65382 AATGTATCGATACAATGAAC
1 AATGTATCGATACAATGAAC
*
65402 AGTGTATCGATACAATGAAC
1 AATGTATCGATACAATGAAC
65422 AATGTATCGATACAATGAAC
1 AATGTATCGATACAATGAAC
65442 AATGTATCGATACAA
1 AATGTATCGATACAA
65457 ATTGTGCAAA
Statistics
Matches: 90, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
19 2 0.02
20 87 0.97
21 1 0.01
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAATGAAC
Found at i:69800 original size:9 final size:10
Alignment explanation
Indices: 69772--69800 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
69762 CTATACAATG
69772 AAATAATCAT
1 AAATAATCAT
69782 AAATAATCAT
1 AAATAATCAT
69792 AAA-AATCAT
1 AAATAATCAT
69801 CAAGATTAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.32
10 13 0.68
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (10 bp):
AAATAATCAT
Found at i:75147 original size:14 final size:14
Alignment explanation
Indices: 75130--75162 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
75120 TAAAAAATGA
*
75130 AAAAATAAAAAAAC
1 AAAAACAAAAAAAC
75144 AAAAACAAAAAAAC
1 AAAAACAAAAAAAC
75158 AAAAA
1 AAAAA
75163 GGAAGGTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.88, C:0.09, G:0.00, T:0.03
Consensus pattern (14 bp):
AAAAACAAAAAAAC
Found at i:76187 original size:14 final size:14
Alignment explanation
Indices: 76163--76205 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
76153 TAGACTTCAC
*
76163 ATCAAGCATTCCAT
1 ATCATGCATTCCAT
* *
76177 ATTATGCATTCCAC
1 ATCATGCATTCCAT
76191 ATCATGCATT-CAT
1 ATCATGCATTCCAT
76204 AT
1 AT
76206 GACCATCACA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
13 4 0.17
14 20 0.83
ACGTcount: A:0.33, C:0.26, G:0.07, T:0.35
Consensus pattern (14 bp):
ATCATGCATTCCAT
Found at i:76804 original size:32 final size:33
Alignment explanation
Indices: 76708--76817 Score: 111
Period size: 32 Copynumber: 3.4 Consensus size: 33
76698 ATCAATCTTC
* *
76708 CAACCTTTTCTAAAGGCC-ACATAAGTCGGTGG
1 CAACCCTTTCTAAAAGCCTACATAAGTCGGTGG
* * * * **
76740 CACCCCTTT-TAAAA-TCTCACACAAATTAGTGG
1 CAACCCTTTCTAAAAGCCT-ACATAAGTCGGTGG
76772 CAACCCTTT-TAAAAGCCTACATAAGTCGGTGG
1 CAACCCTTTCTAAAAGCCTACATAAGTCGGTGG
76804 CAACCCTTTCTAAA
1 CAACCCTTTCTAAA
76818 GCTGACACAA
Statistics
Matches: 60, Mismatches: 14, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
30 1 0.02
31 4 0.07
32 49 0.82
33 6 0.10
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (33 bp):
CAACCCTTTCTAAAAGCCTACATAAGTCGGTGG
Found at i:76819 original size:32 final size:32
Alignment explanation
Indices: 76708--76837 Score: 104
Period size: 32 Copynumber: 4.1 Consensus size: 32
76698 ATCAATCTTC
* * *
76708 CAACCTTTTCTAAAGGC-CACATAAGTCGGTGG
1 CAACCCTTT-TAAAGCCTCACACAAGTCGGTGG
* ** * **
76740 CACCCCTTTTAAAATCTCACACAAATTAGTGG
1 CAACCCTTTTAAAGCCTCACACAAGTCGGTGG
*
76772 CAACCCTTTTAAAAGCCT-ACATAAGTCGGTGG
1 CAACCCTTTT-AAAGCCTCACACAAGTCGGTGG
* *
76804 CAACCCTTTCTAAAG-CTGACACAAGTCGATGG
1 CAACCCTTT-TAAAGCCTCACACAAGTCGGTGG
76836 CA
1 CA
76838 TCTTCTTCTA
Statistics
Matches: 77, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
31 7 0.09
32 64 0.83
33 6 0.08
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.25
Consensus pattern (32 bp):
CAACCCTTTTAAAGCCTCACACAAGTCGGTGG
Found at i:76826 original size:64 final size:64
Alignment explanation
Indices: 76708--76827 Score: 163
Period size: 64 Copynumber: 1.9 Consensus size: 64
76698 ATCAATCTTC
* * * *
76708 CAACCTTTTCTAAAGGCCACATAAGTCGGTGGCACCCCTTTTAAAATCTCACACAAATTAGTGG
1 CAACCCTTTCTAAAAGCCACATAAGTCGGTGGCAACCCTTTTAAAAGCTCACACAAATTAGTGG
*
76772 CAACCCTTT-TAAAAGCCTACATAAGTCGGTGGCAACCCTTTCT-AAAGCTGACACAA
1 CAACCCTTTCTAAAAGCC-ACATAAGTCGGTGGCAACCCTTT-TAAAAGCTCACACAA
76828 GTCGATGGCA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
63 7 0.14
64 41 0.84
65 1 0.02
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.25
Consensus pattern (64 bp):
CAACCCTTTCTAAAAGCCACATAAGTCGGTGGCAACCCTTTTAAAAGCTCACACAAATTAGTGG
Found at i:77005 original size:52 final size:52
Alignment explanation
Indices: 76936--77156 Score: 203
Period size: 52 Copynumber: 4.2 Consensus size: 52
76926 AGCACTCTTT
* * * * * **
76936 CACCTTTGTCATCTTTAAGTCCGATATCGCTAGCCTTGAATTAGCATGTTGG
1 CACCTTTATCATTTTTAAGCCCAATATCGCTAGCCTTGAATCAGCACATTGG
* * * * * *
76988 TACCTTTATCATTTTTAAACCCAATGTCACTAGCCTTGAATCAACACATTTG
1 CACCTTTATCATTTTTAAGCCCAATATCGCTAGCCTTGAATCAGCACATTGG
* * * *
77040 TA-TTCTTATCATTTTTAAGCCCAATGTCGCTAGCCTTGAATGAGCACATTGG
1 CACCT-TTATCATTTTTAAGCCCAATATCGCTAGCCTTGAATCAGCACATTGG
* * * * * *
77092 CA-TTCTTATCATTTTTAAGTCTAATATTGCTGGCGTTGAATCAGCACATTGG
1 CACCT-TTATCATTTTTAAGCCCAATATCGCTAGCCTTGAATCAGCACATTGG
77144 CACCTTTATCATT
1 CACCTTTATCATT
77157 CTTCGCATAT
Statistics
Matches: 139, Mismatches: 28, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
51 1 0.01
52 137 0.99
53 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.38
Consensus pattern (52 bp):
CACCTTTATCATTTTTAAGCCCAATATCGCTAGCCTTGAATCAGCACATTGG
Found at i:83543 original size:51 final size:52
Alignment explanation
Indices: 83457--83554 Score: 139
Period size: 51 Copynumber: 1.9 Consensus size: 52
83447 CATCTCCCGA
* *
83457 CGAGAAATTTAATATTTTGGAGATAATAACGGGGTTGGAGTATCCCCGATTG
1 CGAGAAATTCAATATTTTGGAGATAATAACAGGGTTGGAGTATCCCCGATTG
83509 CGAGAAA-TCAATATTTTAGGA-ATAA-AATCAGGGTTGGAGTATCCCC
1 CGAGAAATTCAATATTTT-GGAGATAATAA-CAGGGTTGGAGTATCCCC
83555 TTGAAAATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
50 2 0.05
51 30 0.71
52 10 0.24
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (52 bp):
CGAGAAATTCAATATTTTGGAGATAATAACAGGGTTGGAGTATCCCCGATTG
Found at i:83612 original size:79 final size:79
Alignment explanation
Indices: 83481--83664 Score: 278
Period size: 79 Copynumber: 2.3 Consensus size: 79
83471 TTTTGGAGAT
*
83481 AATAACGGGGTTGGAGTATCCCCGATTGCGAGAAATCAATATTTTAGGAATAAAATCAGGGTTGG
1 AATAACGGGGTTGGAGTATCCCCGATTGCGAGAAATCAATATTTTAGGAATAAAACCAGGGTTGG
*
83546 AGTATCCCCTTGAA
66 AGTATCCCCTCGAA
* * * *
83560 AATAACGGGGTTGGAGTATCCCCGATTGTGAGAACTCAATATTTTAGGAATAAAGCCGGGGTTGG
1 AATAACGGGGTTGGAGTATCCCCGATTGCGAGAAATCAATATTTTAGGAATAAAACCAGGGTTGG
*
83625 AGTATCCCCTCGGA
66 AGTATCCCCTCGAA
* * *
83639 AGTGATGGGGTTGGAGTATCCCCGAT
1 AATAACGGGGTTGGAGTATCCCCGAT
83665 GATTAACGAG
Statistics
Matches: 95, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
79 95 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (79 bp):
AATAACGGGGTTGGAGTATCCCCGATTGCGAGAAATCAATATTTTAGGAATAAAACCAGGGTTGG
AGTATCCCCTCGAA
Found at i:83726 original size:106 final size:106
Alignment explanation
Indices: 83539--83738 Score: 267
Period size: 106 Copynumber: 1.9 Consensus size: 106
83529 AATAAAATCA
* * *
83539 GGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAGAACTCAATATTT
1 GGGTTGGAGTATCCCC-TGAAAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTT
* *
83604 TAGGAATAAAGCCGGGGTTGGAGTATCCCCTCGGAAGTGATG
65 TAGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAAGTGATG
* * *** *
83646 GGGTTGGAGTATCCCC-GATGATTAACGAGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTT
1 GGGTTGGAGTATCCCCTGA-AAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTT
*
83710 TAGAAATAAAATCGGGGTTGGAGTATCCC
65 TAGAAATAAAACCGGGGTTGGAGTATCCC
83739 TGAGATGAAA
Statistics
Matches: 80, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
105 2 0.03
106 62 0.77
107 16 0.20
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (106 bp):
GGGTTGGAGTATCCCCTGAAAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATCAATATTTT
AGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAAGTGATG
Found at i:86064 original size:13 final size:13
Alignment explanation
Indices: 86046--86071 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86036 ACAAAGATCG
86046 ATGTATCGATACA
1 ATGTATCGATACA
86059 ATGTATCGATACA
1 ATGTATCGATACA
86072 TTCTACAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:86977 original size:46 final size:43
Alignment explanation
Indices: 86927--87070 Score: 136
Period size: 42 Copynumber: 3.3 Consensus size: 43
86917 AAATGTGTCA
*
86927 TGCTCTTTGAGGACTAGAAGGGAAAAGAAGAAAATAAAGAGCGTCC
1 TGCTCTTTGAGGAC-A-AAGGGAAAAG-AGAAAATAAAGTGCGTCC
* *
86973 TGCTCTTTAAGGACAAAGGAGAAAAG-GAAAACGAAA-TGCGTCC
1 TGCTCTTTGAGGACAAAGG-GAAAAGAGAAAA-TAAAGTGCGTCC
* * * *
87016 TGCT-TTTGAGGGCAAA-AG-AAAGAGGAAAATAAAGTGCATCA
1 TGCTCTTTGAGGACAAAGGGAAAAGA-GAAAATAAAGTGCGTCC
87057 TGCTCTTTGAGGAC
1 TGCTCTTTGAGGAC
87071 TACAAAGTGC
Statistics
Matches: 82, Mismatches: 10, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
39 4 0.05
40 4 0.05
41 14 0.17
42 18 0.22
43 15 0.18
44 7 0.09
45 7 0.09
46 13 0.16
ACGTcount: A:0.40, C:0.14, G:0.27, T:0.19
Consensus pattern (43 bp):
TGCTCTTTGAGGACAAAGGGAAAAGAGAAAATAAAGTGCGTCC
Found at i:87143 original size:62 final size:60
Alignment explanation
Indices: 87057--87247 Score: 190
Period size: 55 Copynumber: 3.3 Consensus size: 60
87047 AAGTGCATCA
* *
87057 TGCTCTTTGAGGACT-ACAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGGTGTCC
1 TGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTG-AAA-AAAAAGGCGTCC
* * * * * *
87119 TGCTCTTTGAGGGCTGGAGGGTGCCACCAACTCGTGTGCG-TTT----TAAAAGGCGTCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAAAGGCGTCC
*
87174 TGCTCTTTGAGGACTGAAAGGTACCACCAACTTGTGTGGGCTTTG-----AAAGGCGTCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAAAGGCGTCC
87229 TGCTCTTTGAGGACT-AAAG
1 TGCTCTTTGAGGACTGAAAG
87248 TGTGAAAAGA
Statistics
Matches: 112, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
54 4 0.04
55 69 0.62
56 3 0.03
61 3 0.03
62 33 0.29
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (60 bp):
TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAAAGGCGTCC
Found at i:87201 original size:55 final size:55
Alignment explanation
Indices: 87108--87247 Score: 192
Period size: 55 Copynumber: 2.6 Consensus size: 55
87098 TTTGAAAAGA
* * * * * *
87108 AAAAGGTGTCCTGCTCTTTGAGGGCTGGAGGGTGCCACCAACTCGTGTGCGTTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTACCACCAACTCGTGTGCGCTTT
* *
87163 AAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTACCACCAACTTGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTACCACCAACTCGTGTGCGCTTT
*
87218 GAAAGGCGTCCTGCTCTTTGAGGACT-AAAG
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAAG
87248 TGTGAAAAGA
Statistics
Matches: 76, Mismatches: 9, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
54 4 0.05
55 72 0.95
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.27
Consensus pattern (55 bp):
AAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTACCACCAACTCGTGTGCGCTTT
Found at i:87424 original size:210 final size:211
Alignment explanation
Indices: 87051--87457 Score: 613
Period size: 210 Copynumber: 1.9 Consensus size: 211
87041 AAAATAAAGT
**
87051 GCATCATGCTCTTTGAGGACTACAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGGTG
1 GCATCATGCTCTTTGAGGACTACAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGGCA
* * * *
87116 TCCTGCTCTTTGAGGGCTGGAGGGTGCCACCAACTCGTGTGCGTTTTAAAAGGCGTCCTGCTCTT
66 TCCAGCTCTTTGAGGACTGGAGAGTGCCACCAACTCGTGTGCGCTTTAAAAGGCGTCCTGCTCTT
* ** *
87181 TGAGGACTGAAAGGTACCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAA
131 TGAGGACTGAAAGATACCACCAACTCATGTGGGCTTTGAAAGACGTCCTGCTCTTTGAGGACTAA
87246 AGTGTGAAAAGAGAGA
196 AGTGTGAAAAGAGAGA
* * * *
87262 GCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCA
1 GCATCATGCTCTTTGAGGACTACAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGGCA
* * *
87326 TCCAGCTCTTTGAGGA-TTGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCT
66 TCCAGCTCTTTGAGGACTGGAG-AGTGCCACCAACTCGTGTGCGCTTTAAAAGGCGTCCTGCTCT
*
87390 TTGAGGACTGGAAA-ATGCCACCAACTCATGTGGGCTTTGAAAGACGTCCTGCTCTTTGAGGACT
130 TTGAGGACT-GAAAGATACCACCAACTCATGTGGGCTTTGAAAGACGTCCTGCTCTTTGAGGACT
87454 AAAG
194 AAAG
87458 GTGCCACCAA
Statistics
Matches: 176, Mismatches: 18, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
209 4 0.02
210 121 0.69
211 51 0.29
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (211 bp):
GCATCATGCTCTTTGAGGACTACAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGGCA
TCCAGCTCTTTGAGGACTGGAGAGTGCCACCAACTCGTGTGCGCTTTAAAAGGCGTCCTGCTCTT
TGAGGACTGAAAGATACCACCAACTCATGTGGGCTTTGAAAGACGTCCTGCTCTTTGAGGACTAA
AGTGTGAAAAGAGAGA
Found at i:87493 original size:54 final size:54
Alignment explanation
Indices: 87265--87512 Score: 268
Period size: 55 Copynumber: 4.4 Consensus size: 54
87255 AGAGAGAGCA
* *
87265 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
1 TCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTCGTGTGGGCTTT-----G-AAAGGCG
* *
87326 TCCAGCTCTTTGAGGATTGAGAA-GTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACT-A-AAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
* * *
87381 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTCATGTGGGCTTTGAAAGACG
1 TCCTGCTCTTTGAGGACT--AAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
* * *
87436 TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT-ATAGGGTG
1 TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGA-AAGGCG
*
87490 TCCTGCTCTTTAAGGACTAAAGG
1 TCCTGCTCTTTGAGGACTAAAGG
87513 GTGAAAGGAG
Statistics
Matches: 167, Mismatches: 16, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
53 4 0.02
54 46 0.28
55 71 0.43
56 3 0.02
61 39 0.23
62 4 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (54 bp):
TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
Found at i:87536 original size:264 final size:265
Alignment explanation
Indices: 87059--87661 Score: 786
Period size: 264 Copynumber: 2.3 Consensus size: 265
87049 GTGCATCATG
* * *
87059 CTCTTTGAGGACTACAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGGTGTCCTGCT
1 CTCTTTGAGGACTA-AAAGGTGCCACCAACTCGTCTGGGCTTT-------AAAAGGCGTCCTGCT
* *** * * *
87123 CTTTGAGGGCTGGAGGGTGCCACCAACTCGTGTGCGTTTTAAAAGGCGTCCTGCTCTTTGAGGAC
58 CTTTGAGGACTGGAAAATGCCACCAACTCATGTGCGCTTTAAAAGACGTCCTGCTCTTTGAGGAC
* *
87188 TGAAAGGTACCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGTGTGA
123 TGAAAGGTACCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTAAGGACTAAAGGGTGA
87253 AAAGAGAGAGCATCCTGCTCTTTGAGGACTA-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG
188 AAAGAGAGAGCATCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAG
87317 GAAAAGGCATCC-A
252 GAAAAGGCATCCTA
* * * *
87330 GCTCTTTGAGGATTGAGAA-GTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
1 -CTCTTTGAGGACT-AAAAGGTGCCACCAACTCGTCTGGGCTTTAAAAGGCGTCCTGCTCTTTGA
* *
87394 GGACTGGAAAATGCCACCAACTCATGTGGGCTTTGAAAGACGTCCTGCTCTTTGAGGACT-AAAG
64 GGACTGGAAAATGCCACCAACTCATGTGCGCTTTAAAAGACGTCCTGCTCTTTGAGGACTGAAAG
* * * *
87458 GTGCCACCAACTTGTGTGGGCTTT-ATAGGGTGTCCTGCTCTTTAAGGACTAAAGGGTGAAAGGA
129 GTACCACCAACTTGTGTGGGCTTTGA-AAGGCGTCCTGCTCTTTAAGGACTAAAGGGTGAAAAGA
* * * *
87522 GAGGGCGTCCTGCTCTTTGAGGGCTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAG
193 GAGAGCATCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
**
87587 GTGTCCTA
258 GCATCCTA
* *
87595 CTTTTTGAGGACTAAAAGGTGCCACCAACTTGTCTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGG
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTCTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGG
87660 AC
66 AC
87662 AAAAAGGCGA
Statistics
Matches: 294, Mismatches: 32, Indels: 18
0.85 0.09 0.05
Matches are distributed among these distances:
263 4 0.01
264 178 0.61
265 74 0.25
272 37 0.13
273 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.26
Consensus pattern (265 bp):
CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTCTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGG
ACTGGAAAATGCCACCAACTCATGTGCGCTTTAAAAGACGTCCTGCTCTTTGAGGACTGAAAGGT
ACCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTAAGGACTAAAGGGTGAAAAGAGAG
AGCATCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
TCCTA
Found at i:87617 original size:61 final size:61
Alignment explanation
Indices: 87516--87642 Score: 175
Period size: 61 Copynumber: 2.1 Consensus size: 61
87506 CTAAAGGGTG
* * * * *
87516 AAAGGAGAGGGCGTCCTGCTCTTTGAGGGCTAGGAAGTGCCACCAACTTGTGTGGGCTTTA
1 AAAGGAGAAGGCGTCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTTGTCTGGGCTTTA
* *
87577 AAAGGAGAAGGTGTCCTACTTTTTGAGGACTA-AAAGGTGCCACCAACTTGTCTGGGCTTTA
1 AAAGGAGAAGGCGTCCTACTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTCTGGGCTTTA
87638 AAAGG
1 AAAGG
87643 CGTCCTGCTC
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
60 2 0.03
61 56 0.97
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (61 bp):
AAAGGAGAAGGCGTCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTTGTCTGGGCTTTA
Found at i:87769 original size:303 final size:302
Alignment explanation
Indices: 87381--88096 Score: 1083
Period size: 303 Copynumber: 2.3 Consensus size: 302
87371 TTGAAAGGCG
* ** * * *
87381 TCCTGCTCTTTGAGGACT-GGAAAATGCCACCAACTCATGTGGGCTTTGAAAGACGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTAGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCT
* * *
87445 TTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTATAGGGTGTCCTGCTCTTTAAGGACTAA
65 TTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTAAGGACTAA
* * * *
87510 AGGGTGAAAGGAGAGGGCGTCCTGCTCTTTGAGGGCTAGGAAGTGCCACCAACTTGTGTGGGCTT
130 AGGGTGAAAGGAGAAGGCATCCTGCTCTTTGAGAGCTAGGAAGTGCCACCAACTTGTGTAGGCTT
*
87575 TAAAAGGAGAAGGTGTCCTACTTTTTGAGGACTAAAAGGTGCCACCAACTTGTCTGGGCTTTAAA
195 TAAAAGGAGAAGGCGTCCTACTTTTTGAGGACT-AAAGGTGCCACCAACTTGTCTGGGCTTTAAA
*
87640 AGGCGTCCTGCTCTTTGAGGACAAAAAGGCGAAAGGAGAGAGCA
259 AGGCGTCCTGCTCTTTGAGGACAAAAAGGCAAAAGGAGAGAGCA
87684 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTT
* *
87749 TGAGGACTAAAGGTGCCACCAACTTGTGTGGGTTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAA
66 TGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTAAGGACTAAA
* *
87814 GGGTGAAAGGAGAAGGCATCTTGCTCTTTGAGAGCTAGGAAGTGTCACCAACTTGTGTAGGCTTT
131 GGGTGAAAGGAGAAGGCATCCTGCTCTTTGAGAGCTAGGAAGTGCCACCAACTTGTGTAGGCTTT
* * * * *
87879 AAAAGGAGAAGGCGTCTTGCTTTTTGAGGACTGAAGGTGCCACCATCTTGTGTGGGCTTTAAAAG
196 AAAAGGAGAAGGCGTCCTACTTTTTGAGGACTAAAGGTGCCACCAACTTGTCTGGGCTTTAAAAG
**
87944 GCGTCCTGCTCTTTGAGGACAAAAAGGCAAAAGGAGAGAGTG
261 GCGTCCTGCTCTTTGAGGACAAAAAGGCAAAAGGAGAGAGCA
*
87986 TCCTGCTCTTTGAGGACTAGGAAGCGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTT------AAAAGGCATCCT
* * *
88051 ACTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTAGGCTTTAAAA
60 GCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
88097 AGAAAAAAAG
Statistics
Matches: 375, Mismatches: 31, Indels: 9
0.90 0.07 0.02
Matches are distributed among these distances:
302 115 0.31
303 204 0.54
304 2 0.01
308 54 0.14
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (302 bp):
TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTT
TGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTAAGGACTAAA
GGGTGAAAGGAGAAGGCATCCTGCTCTTTGAGAGCTAGGAAGTGCCACCAACTTGTGTAGGCTTT
AAAAGGAGAAGGCGTCCTACTTTTTGAGGACTAAAGGTGCCACCAACTTGTCTGGGCTTTAAAAG
GCGTCCTGCTCTTTGAGGACAAAAAGGCAAAAGGAGAGAGCA
Found at i:87786 original size:54 final size:54
Alignment explanation
Indices: 87681--87815 Score: 227
Period size: 54 Copynumber: 2.5 Consensus size: 54
87671 AAAGGAGAGA
87681 GCATCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAG
1 GCATCCTGCTCTTTGAGGACTA--AAGGTGCCACCAACTTGTGTGGGCTTTAAAAG
*
87736 GCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGTTTTAAAAG
1 GCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG
*
87790 GCGTCCTGCTCTTTGAGGACTAAAGG
1 GCATCCTGCTCTTTGAGGACTAAAGG
87816 GTGAAAGGAG
Statistics
Matches: 77, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
53 2 0.03
54 53 0.69
55 22 0.29
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (54 bp):
GCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG
Found at i:87958 original size:154 final size:155
Alignment explanation
Indices: 87381--88096 Score: 928
Period size: 154 Copynumber: 4.7 Consensus size: 155
87371 TTGAAAGGCG
* ** *
87381 TCCTGCTCTTTGAGGACT-GGAAAATGCCACCAACTCATGTGGGCTTT-----GA-AAGACGTCC
1 TCCTGCTCTTTGAGGACTAGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCC
* * * *
87439 TGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTATAGGGTGTCCTGCTCTTTAAG
65 TGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAG
* * * * *
87504 GACTAAAGGGTGAAAGGAG-AGGGCG
130 GACAAAAAGGCGAAAGGAGAAGAGCA
* *
87529 TCCTGCTCTTTGAGGGCTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTGTCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
* * *
87594 ACTTTTTGAGGACTAAAAGGTGCCACCAACTTGTCTGGGCTTTAAAAGGCGTCCTGCTCTTTGAG
66 GCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAG
87659 GACAAAAAGGCGAAAGGAG-AGAGCA
130 GACAAAAAGGCGAAAGGAGAAGAGCA
*
87684 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTT---A--A-AAGGCATCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
*
87743 GCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGTTTTAAAAGGCGTCCTGCTCTTTGAGG
66 GCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGG
* * *
87808 ACTAAAGGGTGAAAGGAGAAG-GCA
131 ACAAAAAGGCGAAAGGAGAAGAGCA
* * * *
87832 TCTTGCTCTTTGA-GAGCTAGGAAGTGTCACCAACTTGTGTAGGCTTTAAAAGGAGAAGGCGTCT
1 TCCTGCTCTTTGAGGA-CTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCC
* * *
87896 TGCTTTTTGAGGACTGAAGGTGCCACCATCTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAG
65 TGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAG
* **
87961 GACAAAAAGGCAAAAGGAG-AGAGTG
130 GACAAAAAGGCGAAAGGAGAAGAGCA
* * *
87986 TCCTGCTCTTTGAGGACTAGGAAGCGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
* * *
88051 ACTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTAGGCTTTAAAA
66 GCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
88097 AGAAAAAAAG
Statistics
Matches: 496, Mismatches: 54, Indels: 30
0.86 0.09 0.05
Matches are distributed among these distances:
147 2 0.00
148 148 0.30
149 24 0.05
150 1 0.00
151 1 0.00
152 1 0.00
153 5 0.01
154 201 0.41
155 113 0.23
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (155 bp):
TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
GCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGG
ACAAAAAGGCGAAAGGAGAAGAGCA
Found at i:88098 original size:61 final size:61
Alignment explanation
Indices: 87985--88621 Score: 786
Period size: 60 Copynumber: 10.4 Consensus size: 61
87975 AGGAGAGAGT
* *
87985 GTCCTGCTCTTTGAGGACTAGGAA-GCGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGC
1 GTCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGC
* * * * *
88046 ATCCTACTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTAGGCTTTAAAAAGAAAAAAAGT
1 GTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG-AAAAAGGC
* * *
88108 GTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG-AAAAAGGC
* * *
88170 GTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGT-GGCTTTGAAAAAG-AAAAGTC
1 GTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAAGAAAAAGGC
* *
88230 GTCCTGCTCTTTGAGGACTAGGAA-GCGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGC
1 GTCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGC
* * ** *
88291 ATCCTGTTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGCAAAGGT
1 GTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGC
* * * * * *
88351 GTCCTGCTTTTTTAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAGAGGT
1 GTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGC
* **
88411 GTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCATGTGGGCTTTAAAAAGAAAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGC
* * * *
88472 ATCCTGCTCTTTGAGGACTGGAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAAGT
1 GTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG-AAAAAGGC
* * *
88534 GTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAA-AGAAAAAGGC
*
88597 GTCCTGCTCTTTAAGGACTGGAAGG
1 GTCCTGCTCTTTGAGGACT-GAAGG
88622 GCTAAAAGAG
Statistics
Matches: 506, Mismatches: 56, Indels: 25
0.86 0.10 0.04
Matches are distributed among these distances:
59 6 0.01
60 182 0.36
61 124 0.25
62 161 0.32
63 28 0.06
64 5 0.01
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (61 bp):
GTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGC
Found at i:94857 original size:79 final size:78
Alignment explanation
Indices: 94744--94979 Score: 341
Period size: 79 Copynumber: 3.0 Consensus size: 78
94734 CATCTCCCGA
*
94744 CGAGAAATTTAATATTTT-GGAGATAATAACGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTT
1 CGAGAAA-TCAATATTTTAGGA-ATAA-AACGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTT
94808 GGAGTATCCCCGATTG
63 GGAGTATCCCCGATTG
94824 CGAGAAATCAATATTTTAGGAATAAAACTGGGGTTGGAGTATCCCCTC-AGAAATAACGGGGTTG
1 CGAGAAATCAATATTTTAGGAATAAAAC-GGGGTTGGAGTATCCCCTCGA-AAATAACGGGGTTG
94888 GAGTATCCCCGATTG
64 GAGTATCCCCGATTG
* * * * * *
94903 TGAGAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTATCCCCTCGGAAGTGACGGGGTTGG
1 CGAGAAATCAATATTTTAGGAATAAA-ACGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGG
94968 AGTATCCCCGAT
65 AGTATCCCCGAT
94980 GATTAACGGG
Statistics
Matches: 144, Mismatches: 7, Indels: 11
0.89 0.04 0.07
Matches are distributed among these distances:
78 4 0.03
79 129 0.90
80 11 0.08
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (78 bp):
CGAGAAATCAATATTTTAGGAATAAAACGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGA
GTATCCCCGATTG
Found at i:94996 original size:27 final size:28
Alignment explanation
Indices: 94931--95006 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 28
94921 GAAATAAAGC
*** *
94931 CGGGGTTGGAGTATCCCCTCGGAAGTGA
1 CGGGGTTGGAGTATCCCCGATGAAGTAA
*
94959 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAGTAA
*
94986 CGGGGTTGGAGTATCCTCGAT
1 CGGGGTTGGAGTATCCCCGAT
95007 TGTGAAAAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.18, C:0.20, G:0.37, T:0.25
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAGTAA
Found at i:95041 original size:106 final size:107
Alignment explanation
Indices: 94853--95054 Score: 291
Period size: 106 Copynumber: 1.9 Consensus size: 107
94843 GAATAAAACT
*
94853 GGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATT
1 GGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATT
*
94918 TTAGAAATAAAGCCGGGGTTGGAGTATCCCCTCGGAAGTGAC
66 TTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAAGTGAC
* * * *** *
94960 GGGGTTGGAGTATCCCC-GATG-ATTAACGGGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGT
1 GGGGTTGGAGTATCCCCTCA-GAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATAT
*
95023 TTTAGAAATAAAATCGGGGTTGGAGTATCCCC
65 TTTAGAAATAAAACCGGGGTTGGAGTATCCCC
95055 GAGTTGAAAA
Statistics
Matches: 84, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
106 66 0.79
107 18 0.21
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.27
Consensus pattern (107 bp):
GGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATT
TTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAAGTGAC
Found at i:97185 original size:13 final size:13
Alignment explanation
Indices: 97167--97192 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97157 ACAAAGATCG
97167 ATGTATCGATACA
1 ATGTATCGATACA
97180 ATGTATCGATACA
1 ATGTATCGATACA
97193 TTCTACAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:97817 original size:22 final size:23
Alignment explanation
Indices: 97779--97823 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
97769 TTTTGAAAAA
97779 GAGAAGAAATTTTATTAA-AGGG
1 GAGAAGAAATTTTATTAAGAGGG
*
97801 GAGAA-AATTTTTAATTAAGAGGG
1 GAGAAGAAATTTT-ATTAAGAGGG
97824 AGTTATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 6 0.30
22 10 0.50
23 4 0.20
ACGTcount: A:0.44, C:0.00, G:0.27, T:0.29
Consensus pattern (23 bp):
GAGAAGAAATTTTATTAAGAGGG
Found at i:100609 original size:88 final size:88
Alignment explanation
Indices: 100409--100609 Score: 217
Period size: 88 Copynumber: 2.3 Consensus size: 88
100399 GGAATAACAG
100409 GGATGGAGTTTCCCCAAAGATAAAATTCCACAAAAGAAAATTTGATTTTTTTTGAAGAGCAAGGA
1 GGATGGAGTTTCCCCAAAGATAAAATTCCACAAAAGAAAATTTGATTTTTTTTGAAGAGCAAGGA
*** * * **
100474 TGGAATGTCTTTTTGGACTAGTGG
66 TGG-ATGTCCCCTTGGACGAATAA
* * ** * **
100498 GGATAGAGTTCCCCCAAAGATAAAATTCCATGAAGGAAAATTTG-TTTTTTTTGAAGAGCGGGGT
1 GGATGGAGTTTCCCCAAAGATAAAATTCCACAAAAGAAAATTTGATTTTTTTTGAAGAGCAAGG-
*
100562 TATGG-TGTCCCCTTGGAGGAATAA
65 -ATGGATGTCCCCTTGGACGAATAA
*
100586 GGATGGAGTTTCCCCAAAAATAAA
1 GGATGGAGTTTCCCCAAAGATAAA
100610 TTTTTTTTAA
Statistics
Matches: 92, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
88 49 0.53
89 39 0.42
90 4 0.04
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.29
Consensus pattern (88 bp):
GGATGGAGTTTCCCCAAAGATAAAATTCCACAAAAGAAAATTTGATTTTTTTTGAAGAGCAAGGA
TGGATGTCCCCTTGGACGAATAA
Found at i:103206 original size:149 final size:149
Alignment explanation
Indices: 102925--103212 Score: 409
Period size: 149 Copynumber: 1.9 Consensus size: 149
102915 GATAAAAACT
* ** * *
102925 AACCTACTCCTAATTCAACCTATCGGTGTAGAAGCGGACCCAGTAGTTTTATAGGACTAGGTTTT
1 AACCTACTCCTAATTCAAACTATCGGCATAGAAACGGACCCAGTAGTTTTATAGGACTAGGTTTC
* *
102990 GAGGAAAACAAAGCTAAAATATCCCTAAGGTTTACCATCAACTTAGAAGTGCCCGGTGATCCTAA
66 AAGG---A-AAAGCTAAAATATCCCTAAGGTTTACCATCAACTTAGAAGTGCCCGATGATCCTAA
103055 GGGACTTGAAAAGGGTAAAAGAG
127 GGGACTTGAAAAGGGTAAAAGAG
* *
103078 AACCTACTCCTAATTCATAACT-TCGGCATAGAAACGGATCCGGTAGTTTTATAGGACTAGGTTT
1 AACCTACTCCTAATTCA-AACTATCGGCATAGAAACGGACCCAGTAGTTTTATAGGACTAGGTTT
* *
103142 CAACGG-AATGCTAAAATATCCCTAAGGTTTACCATCGACTTAGAAGTGCCCGATGATCCTAAGG
65 CAA-GGAAAAGCTAAAATATCCCTAAGGTTTACCATCAACTTAGAAGTGCCCGATGATCCTAAGG
103206 GACTTGA
129 GACTTGA
103213 TAAAATTTTT
Statistics
Matches: 122, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
149 62 0.51
153 55 0.45
154 5 0.04
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (149 bp):
AACCTACTCCTAATTCAAACTATCGGCATAGAAACGGACCCAGTAGTTTTATAGGACTAGGTTTC
AAGGAAAAGCTAAAATATCCCTAAGGTTTACCATCAACTTAGAAGTGCCCGATGATCCTAAGGGA
CTTGAAAAGGGTAAAAGAG
Found at i:103772 original size:20 final size:20
Alignment explanation
Indices: 103749--103822 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
103739 ACAATTCAAA
103749 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
103769 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
*
103790 GTATCGATACATGTTGCAAA
1 GTATCGATACATGTTGCAAT
103810 GTATCGATACATG
1 GTATCGATACATG
103823 AAAAAGATGT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:103793 original size:21 final size:21
Alignment explanation
Indices: 103767--103842 Score: 102
Period size: 21 Copynumber: 3.7 Consensus size: 21
103757 ACATGTTGCA
103767 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
***
103788 ATGTATCGATACATGTTGCAA-
1 ATGTATCGATACATG-AAAAAG
103809 A-GTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
103829 ATGTATCGATACAT
1 ATGTATCGATACAT
103843 TTCTTGGCAG
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.04
20 14 0.30
21 28 0.61
22 2 0.04
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.28
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:103800 original size:41 final size:41
Alignment explanation
Indices: 103749--103842 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
103739 ACAATTCAAA
*
103749 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAAAGTATCGATACATGAAAAAGAT
103790 GTATCGATACATGTTGCAAAGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAAAGTATCGATACATGAAAAAGAT
103831 GTATCGATACAT
1 GTATCGATACAT
103843 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (41 bp):
GTATCGATACATGTTGCAAAGTATCGATACATGAAAAAGAT
Found at i:103899 original size:13 final size:13
Alignment explanation
Indices: 103881--103906 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
103871 TACAGCAAGT
103881 ATGTATCGATACA
1 ATGTATCGATACA
103894 ATGTATCGATACA
1 ATGTATCGATACA
103907 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:104427 original size:34 final size:35
Alignment explanation
Indices: 104364--104430 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
104354 CTAAGTGATT
104364 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
104400 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
104431 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:107662 original size:13 final size:13
Alignment explanation
Indices: 107644--107668 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
107634 TTTTCCAGAT
107644 TGTATCGATACAA
1 TGTATCGATACAA
107657 TGTATCGATACA
1 TGTATCGATACA
107669 TTACTTCAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:109510 original size:20 final size:20
Alignment explanation
Indices: 109487--109560 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
109477 ACAATTCAAA
109487 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
109507 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
*
109528 GTATCGATACATGTTGCAAA
1 GTATCGATACATGTTGCAAT
109548 GTATCGATACATG
1 GTATCGATACATG
109561 AAAAAGATGT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:109531 original size:21 final size:21
Alignment explanation
Indices: 109505--109580 Score: 102
Period size: 21 Copynumber: 3.7 Consensus size: 21
109495 ACATGTTGCA
109505 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
***
109526 ATGTATCGATACATGTTGCAA-
1 ATGTATCGATACATG-AAAAAG
109547 A-GTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
109567 ATGTATCGATACAT
1 ATGTATCGATACAT
109581 TTCTTGGCAG
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.04
20 14 0.30
21 28 0.61
22 2 0.04
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.28
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:109538 original size:41 final size:41
Alignment explanation
Indices: 109487--109580 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
109477 ACAATTCAAA
*
109487 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAAAGTATCGATACATGAAAAAGAT
109528 GTATCGATACATGTTGCAAAGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAAAGTATCGATACATGAAAAAGAT
109569 GTATCGATACAT
1 GTATCGATACAT
109581 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (41 bp):
GTATCGATACATGTTGCAAAGTATCGATACATGAAAAAGAT
Found at i:109637 original size:13 final size:13
Alignment explanation
Indices: 109619--109644 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
109609 TACAGCAAGT
109619 ATGTATCGATACA
1 ATGTATCGATACA
109632 ATGTATCGATACA
1 ATGTATCGATACA
109645 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:110165 original size:34 final size:35
Alignment explanation
Indices: 110102--110168 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
110092 CTAAGTGATT
110102 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
110138 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
110169 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:111842 original size:18 final size:18
Alignment explanation
Indices: 111821--111856 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
111811 TTTTCTTTTT
*
111821 TTTTTTAATTTTTCCATG
1 TTTTTCAATTTTTCCATG
*
111839 TTTTTCCATTTTTCCATG
1 TTTTTCAATTTTTCCATG
111857 CTATTTTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.17, G:0.06, T:0.64
Consensus pattern (18 bp):
TTTTTCAATTTTTCCATG
Found at i:112599 original size:165 final size:163
Alignment explanation
Indices: 112265--112731 Score: 571
Period size: 165 Copynumber: 2.8 Consensus size: 163
112255 ATGTTAAATA
* * * *
112265 AATTTTAAAAATTTTAAATCGAGAAAAATCTCCCTAAAAATATTTATGGAATAAAAAAATCAATT
1 AATTTTAAAAATTATAAATCAAGAAAAATCTCCCCAAAAACATTTATGGAATAAAAAAATCAATT
* * *
112330 TTTCGAAAATAGGAGAATTTTAAAGAAAAAATGAAAAACTTAGGAAAATAAAAGAATTTTTCAAA
66 TTTCGAAAATAGGAGAATTTCAAAG--AAAATGAAAAACTTATGAAAA-AAAAGAAATTTTCAAA
* * * * *
112395 ATTGACTTAGTATGAATTAAATTATGATATTTAATG
128 ACTGAATTACTATGAATTAAATGATGACATTTAATG
* * * * *
112431 AATTTTAAAAATTATAAATCAAGAAAAATCCCCCCGAGAACATTTATGGAATAGAAAACTCAATT
1 AATTTTAAAAATTATAAATCAAGAAAAATCTCCCCAAAAACATTTATGGAATAAAAAAATCAA-T
* * * *
112496 TTTTTGGAAACATGAGAATTTCAAAGAAAATGAAAAACTTATGAAAAAAAATGAAATTTTCAAAA
65 TTTTCGAAAATAGGAGAATTTCAAAGAAAATGAAAAACTTATGAAAAAAAA-GAAATTTTCAAAA
*
112561 CTGAATTACTATGAATTAAATGATGACATTTGATG
129 CTGAATTACTATGAATTAAATGATGACATTTAATG
* * * * *
112596 AATTTTAAAAATTATAAACCAAGAAAAATCTCCCCAAAAACATTTATAGAGTAAAAAATTTC-GT
1 AATTTTAAAAATTATAAATCAAGAAAAATCTCCCCAAAAACATTTATGGAATAAAAAA-ATCAAT
* * *
112660 ATTTCGAAAATAGGAGAATTTCAAAAAAAATGAAAAA-TTCATGAAATAAAAGGAAATTTTCAAA
65 TTTTCGAAAATAGGAGAATTTCAAAGAAAATGAAAAACTT-ATGAAA-AAAAAGAAATTTTCAAA
112724 ACT-AATTA
128 ACTGAATTA
112732 AATGGTGACT
Statistics
Matches: 258, Mismatches: 38, Indels: 13
0.83 0.12 0.04
Matches are distributed among these distances:
163 7 0.03
164 57 0.22
165 116 0.45
166 56 0.22
167 22 0.09
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.30
Consensus pattern (163 bp):
AATTTTAAAAATTATAAATCAAGAAAAATCTCCCCAAAAACATTTATGGAATAAAAAAATCAATT
TTTCGAAAATAGGAGAATTTCAAAGAAAATGAAAAACTTATGAAAAAAAAGAAATTTTCAAAACT
GAATTACTATGAATTAAATGATGACATTTAATG
Found at i:116482 original size:13 final size:13
Alignment explanation
Indices: 116464--116489 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
116454 CAATTTTTTG
116464 TGTATCGATACAT
1 TGTATCGATACAT
116477 TGTATCGATACAT
1 TGTATCGATACAT
116490 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:116554 original size:21 final size:21
Alignment explanation
Indices: 116528--116603 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
116518 CTGCCAAGAA
*
116528 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
116549 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
116569 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
116590 ATGTATCGATACAT
1 ATGTATCGATACAT
116604 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:116574 original size:20 final size:20
Alignment explanation
Indices: 116549--116621 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
116539 CATCTTTTTT
116549 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
116569 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
116590 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
116610 ATGTATCGATAC
1 ATGTATCGATAC
116622 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:116585 original size:41 final size:41
Alignment explanation
Indices: 116528--116621 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
116518 CTGCCAAGAA
*
116528 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
116569 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
116610 ATGTATCGATAC
1 ATGTATCGATAC
116622 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:117314 original size:53 final size:53
Alignment explanation
Indices: 117229--117335 Score: 205
Period size: 53 Copynumber: 2.0 Consensus size: 53
117219 CTCCTTTATC
*
117229 TCCCTCGTTTATTTAAAAAATCTCCCCCTTAATCAAGTGATTCATATCAAAAT
1 TCCCCCGTTTATTTAAAAAATCTCCCCCTTAATCAAGTGATTCATATCAAAAT
117282 TCCCCCGTTTATTTAAAAAATCTCCCCCTTAATCAAGTGATTCATATCAAAAT
1 TCCCCCGTTTATTTAAAAAATCTCCCCCTTAATCAAGTGATTCATATCAAAAT
117335 T
1 T
117336 TATTTGCACT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.34, C:0.25, G:0.06, T:0.36
Consensus pattern (53 bp):
TCCCCCGTTTATTTAAAAAATCTCCCCCTTAATCAAGTGATTCATATCAAAAT
Found at i:119138 original size:13 final size:13
Alignment explanation
Indices: 119120--119158 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
119110 ATAATCACCC
*
119120 TGTATCGATACAG
1 TGTATCGATACAA
119133 TGTATCGATACAA
1 TGTATCGATACAA
119146 TGTATCGATACAA
1 TGTATCGATACAA
119159 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:119169 original size:20 final size:20
Alignment explanation
Indices: 119144--119222 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
119134 GTATCGATAC
119144 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
119164 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
*
119189 GATGTATCGATACACAA-AAA
1 AATGTATCGATACA-AAGAAA
*
119209 CATGTATCGATACA
1 AATGTATCGATACA
119223 TTTTGGACAT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
20 32 0.65
25 16 0.33
26 1 0.02
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:121257 original size:15 final size:15
Alignment explanation
Indices: 121237--121267 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
121227 ATTTCGTTTG
*
121237 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
121252 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
121267 G
1 G
121268 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:125347 original size:13 final size:13
Alignment explanation
Indices: 125329--125354 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
125319 CAATTTTTTG
125329 TGTATCGATACAT
1 TGTATCGATACAT
125342 TGTATCGATACAT
1 TGTATCGATACAT
125355 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:125419 original size:21 final size:21
Alignment explanation
Indices: 125393--125468 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
125383 CTGCCAAGAA
*
125393 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
125414 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
125434 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
125455 ATGTATCGATACAT
1 ATGTATCGATACAT
125469 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:125439 original size:20 final size:20
Alignment explanation
Indices: 125414--125486 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
125404 CATCTTTTTT
125414 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
125434 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
125455 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
125475 ATGTATCGATAC
1 ATGTATCGATAC
125487 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:125450 original size:41 final size:41
Alignment explanation
Indices: 125393--125486 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
125383 CTGCCAAGAA
*
125393 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
125434 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
125475 ATGTATCGATAC
1 ATGTATCGATAC
125487 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:128366 original size:33 final size:33
Alignment explanation
Indices: 128322--128400 Score: 149
Period size: 33 Copynumber: 2.4 Consensus size: 33
128312 AAAATTCAGA
128322 ATGTATCGATACATTATATCGATACAATGTACC
1 ATGTATCGATACATTATATCGATACAATGTACC
*
128355 ATGTATTGATACATTATATCGATACAATGTACC
1 ATGTATCGATACATTATATCGATACAATGTACC
128388 ATGTATCGATACA
1 ATGTATCGATACA
128401 AACAGTGGTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (33 bp):
ATGTATCGATACATTATATCGATACAATGTACC
Found at i:128367 original size:20 final size:20
Alignment explanation
Indices: 128338--128401 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
128328 CGATACATTA
128338 TATCGATACAATGTACCATG
1 TATCGATACAATGTACCATG
*
128358 TATTGATAC-AT-T---A--
1 TATCGATACAATGTACCATG
128371 TATCGATACAATGTACCATG
1 TATCGATACAATGTACCATG
128391 TATCGATACAA
1 TATCGATACAA
128402 ACAGTGGTAG
Statistics
Matches: 35, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
13 8 0.23
14 2 0.06
15 2 0.06
18 2 0.06
19 2 0.06
20 19 0.54
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (20 bp):
TATCGATACAATGTACCATG
Found at i:128477 original size:19 final size:20
Alignment explanation
Indices: 128430--128481 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
128420 CTGCCAGTTT
**
128430 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
128450 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
*
128469 CATGCATCGATAC
1 CATGTATCGATAC
128482 TTTGTATCGA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:130883 original size:21 final size:20
Alignment explanation
Indices: 130844--130883 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
130834 TTTGTTGGTG
* *
130844 ATTTTGATGAAAGATGAAGT
1 ATTTTGAAGAAAAATGAAGT
130864 ATTTTGAAGTAAAAATGAAG
1 ATTTTGAAG-AAAAATGAAG
130884 AAATTTGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.45, C:0.00, G:0.23, T:0.33
Consensus pattern (20 bp):
ATTTTGAAGAAAAATGAAGT
Found at i:136274 original size:52 final size:51
Alignment explanation
Indices: 136189--136312 Score: 196
Period size: 52 Copynumber: 2.4 Consensus size: 51
136179 ATATGAAAAG
* *
136189 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAA
136240 TTTGCCTGCATGTATCGATACATTTTAA-AATGTATCGATACATCTGGGCAAA
1 -TTGCCTGCATGTATCGATACA-TTTAATAATGTATCGATACATCTGGGCAAA
*
136292 TTGTCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
136313 AAGATCAGTG
Statistics
Matches: 68, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
51 20 0.29
52 43 0.63
53 5 0.07
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAA
Found at i:136325 original size:51 final size:50
Alignment explanation
Indices: 136189--136332 Score: 168
Period size: 52 Copynumber: 2.8 Consensus size: 50
136179 ATATGAAAAG
* *
136189 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA--AAATAGTGTATCGATACATCTGGGCAAAT
136241 TTGCCTGCATGTATCGATACATTTTAAA-A-TGTATCGATACATCTGGGCAAA-
1 TTGCCTGCATGTATCGATACA----AAATAGTGTATCGATACATCTGGGCAAAT
*
136292 TTGTCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACAAA-AT-AGTGTATCGATACA
136333 ATGTATCGAT
Statistics
Matches: 83, Mismatches: 3, Indels: 13
0.84 0.03 0.13
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
50 1 0.01
51 32 0.39
52 42 0.51
53 1 0.01
54 4 0.05
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (50 bp):
TTGCCTGCATGTATCGATACAAAATAGTGTATCGATACATCTGGGCAAAT
Found at i:136339 original size:13 final size:13
Alignment explanation
Indices: 136321--136345 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
136311 CAAAGATCAG
136321 TGTATCGATACAA
1 TGTATCGATACAA
136334 TGTATCGATACA
1 TGTATCGATACA
136346 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:136423 original size:33 final size:33
Alignment explanation
Indices: 136386--136452 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
136376 AGTAGCTTAA
136386 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
136419 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
136452 A
1 A
136453 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:136426 original size:13 final size:13
Alignment explanation
Indices: 136408--136432 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
136398 CAAAAAAATA
136408 TGTATCGATACAT
1 TGTATCGATACAT
136421 TGTATCGATACA
1 TGTATCGATACA
136433 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:137348 original size:175 final size:170
Alignment explanation
Indices: 136975--137355 Score: 439
Period size: 169 Copynumber: 2.2 Consensus size: 170
136965 CCACTGTGCA
* * * *
136975 GATTCAAGGCCTGCCACACTGGACTTAAAGATGATGAGGATGAAGAGCGATGAAAGGACCAATAT
1 GATTCAAGGCCAGCCACATTGGACTTAAAGATGAAGAGGATGAAAAGCGATGAAAGGACCAATAT
*
137040 GTTGATTCACGGCCAACGATATTGGGTTTAAAGACGAGAAAAAGGATAAAAGAGCCAATATGCGG
66 GTTGATTCACGGCCAACGATATTGGGCTTAAAGACGAGAAAAAGGATAAAAGAGCCAATATGCGG
* * * *
137105 CTAGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCT
131 CCAGCGACATTGAACTTAAAGATAAAGGTGCCAATATGCT
* * *
137145 GATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGA-GAAAAGTGAT-AAA-GATGCCAAT
1 GATTCAAGGCCAGCCACATTGGACTTAAAGATGAAGAGGATGAAAAGCGATGAAAGGA--CCAAT
* * * * **
137207 ATGTTGATTCACGGCCAATGATATTGGGCTTAAAGATGATGAAAAAGGATGACAATGTGCTGAT-
64 ATGTTGATTCACGGCCAACGATATTGGGCTTAAAGACGA-GAAAAAGGAT-A-AAAGAGCCAATA
* *
137271 T-CAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCGATATGCT
126 TGC--GGCCAGCGACATTGAACTTAAAGAT---AAAGGTGCCAATATGCT
* *
137320 GATTCAAGGCCAGCTATATTGGACTTAAAGATGAAG
1 GATTCAAGGCCAGCCACATTGGACTTAAAGATGAAG
137356 GTGCCAATGT
Statistics
Matches: 179, Mismatches: 22, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
167 2 0.01
168 3 0.02
169 49 0.27
170 46 0.26
171 2 0.01
172 28 0.16
175 49 0.27
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (170 bp):
GATTCAAGGCCAGCCACATTGGACTTAAAGATGAAGAGGATGAAAAGCGATGAAAGGACCAATAT
GTTGATTCACGGCCAACGATATTGGGCTTAAAGACGAGAAAAAGGATAAAAGAGCCAATATGCGG
CCAGCGACATTGAACTTAAAGATAAAGGTGCCAATATGCT
Found at i:137376 original size:49 final size:49
Alignment explanation
Indices: 137259--137781 Score: 629
Period size: 49 Copynumber: 10.7 Consensus size: 49
137249 AAAAGGATGA
*
137259 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
137311 CGATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
137360 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAAGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * * *
137409 CAATATGCTGATTCAAGGCTAGCTATATTGGGCTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
137458 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
137510 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
137553 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
137602 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
137654 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
137697 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
137746 CAATATGTTGATTCAAGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
137782 GAAGGGTTGC
Statistics
Matches: 405, Mismatches: 48, Indels: 39
0.82 0.10 0.08
Matches are distributed among these distances:
43 76 0.19
47 2 0.00
48 2 0.00
49 209 0.52
50 2 0.00
51 1 0.00
52 113 0.28
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:137396 original size:101 final size:100
Alignment explanation
Indices: 137259--137781 Score: 659
Period size: 101 Copynumber: 5.4 Consensus size: 100
137249 AAAAGGATGA
* * *
137259 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCGATATGCTGATT
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-GAAAAGGTGCCAATATGCTGATT
137324 CAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
65 CAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
137360 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-AAAA-GTGCCAATATGCTGATTC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAAAGGTGCCAATATGCTGATTC
* * * *
137423 AAGGCTAGCTATATTGGGCTTAATGGTGAAGGTGC
66 AAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
137458 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATT
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-GAAAAGGTGCCAATATGCTGATT
*
137523 CAAGGCCAGCGATATTGGACTT----A--AAGGTGC
65 CAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* *
137553 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG--AAGGTGCCAATGTGCTGAGTC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAAAGGTGCCAATATGCTGATTC
*
137616 AAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGC
66 AAGGCCAGCTATATTGGACTTAAAGAT-G--AAGGTGC
* * * * * *
137654 CAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----T--AAAGGTGCCAATGTGCTGAGTC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAAAGGTGCCAATATGCTGATTC
* *
137711 AAGGCCAGCTACATTGGACTTAAAGATGAAGATGC
66 AAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * * * *
137746 CAATATGTTGATTCAAGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTA
137782 GAAGGGTTGC
Statistics
Matches: 384, Mismatches: 23, Indels: 37
0.86 0.05 0.08
Matches are distributed among these distances:
92 74 0.19
93 1 0.00
94 2 0.01
95 97 0.25
96 1 0.00
98 89 0.23
99 4 0.01
100 5 0.01
101 111 0.29
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (100 bp):
CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAAAGGTGCCAATATGCTGATTC
AAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
Found at i:137563 original size:43 final size:44
Alignment explanation
Indices: 137501--137786 Score: 270
Period size: 43 Copynumber: 6.1 Consensus size: 44
137491 TTAAAGATGG
* * *
137501 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTT
*
137545 -AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTT
1 AAAAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTT
*
137588 AAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT
1 --A-A--AAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGAC-T-----T
* * *
137643 GGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 --AAAAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTT
*
137689 -AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTT
1 AAAAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTT
* * * *
137732 AAAGATGAAGATGCCAATATGTTGATTCAAGGCCAGCTATATTGGGCTT
1 AAA-A-G--G-TGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTT
*
137781 AGAAGG
1 AAAAGG
137787 GTTGCCACCG
Statistics
Matches: 204, Mismatches: 20, Indels: 35
0.79 0.08 0.14
Matches are distributed among these distances:
43 78 0.38
44 2 0.01
45 2 0.01
46 2 0.01
47 2 0.01
48 2 0.01
49 75 0.37
50 1 0.00
51 1 0.00
52 36 0.18
54 1 0.00
55 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.24
Consensus pattern (44 bp):
AAAAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTT
Found at i:137599 original size:144 final size:144
Alignment explanation
Indices: 137250--137781 Score: 737
Period size: 144 Copynumber: 3.6 Consensus size: 144
137240 AGATGATGAA
* * * *
137250 AAAGGATGACAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCGAT
1 AAAGG-TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAAT
* * * *
137315 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGGTGCCAATGTGCTGAGTCAAG
62 ATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAG
* *
137377 GCCAGCTACATTGGACTT
127 GCCAGCGATATTGGACTT
* * * * * * *
137395 AAAGATAAAAGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGGCTTAATGGTGAAGGTGCCA
1 AAAG------GTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCA
*
137460 ATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCA
60 ATATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCA
137525 AGGCCAGCGATATTGGACTT
125 AGGCCAGCGATATTGGACTT
*
137545 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGC
1 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
137610 TGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCA
66 TGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCA
137675 GCGATATTGGACTT
131 GCGATATTGGACTT
* *
137689 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGT
1 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
* * *
137754 TGATTCAAGGCCAGCTATATTGGGCTTA
66 TGAGTCAAGGCCAGCTACATTGGACTTA
137782 GAAGGGTTGC
Statistics
Matches: 349, Mismatches: 29, Indels: 19
0.88 0.07 0.05
Matches are distributed among these distances:
144 220 0.63
145 4 0.01
147 44 0.13
148 1 0.00
149 1 0.00
150 78 0.22
151 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (144 bp):
AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
TGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCA
GCGATATTGGACTT
Found at i:137731 original size:95 final size:94
Alignment explanation
Indices: 137545--137786 Score: 344
Period size: 95 Copynumber: 2.5 Consensus size: 94
137535 TATTGGACTT
* * *
137545 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A-GAAGGTGCCAATGTGC
137610 TGAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
61 TGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G
*
137645 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA-AAGGTGCCAATGTGCTGAG
1 -AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAGAAGGTGCCAATGTGCTGAG
137709 TCAAGGCCAGCTACATTGGACTTAAAGATG
65 TCAAGGCCAGCTACATTGGACTTAAAGATG
* * *
137739 -AAGATGCCAATATGTTGATTCAAGGCCAGCTATATTGGGCTTAGAAGG
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAGAAGG
137787 GTTGCCACCG
Statistics
Matches: 132, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
92 39 0.30
93 4 0.03
94 1 0.01
95 48 0.36
97 1 0.01
101 39 0.30
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (94 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAGAAGGTGCCAATGTGCTGAGT
CAAGGCCAGCTACATTGGACTTAAAGATG
Found at i:137749 original size:193 final size:192
Alignment explanation
Indices: 137249--137781 Score: 596
Period size: 193 Copynumber: 2.7 Consensus size: 192
137239 AAGATGATGA
* * * * * *
137249 AAAAGGATGACAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCGA
1 AAAAGG-TGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTT----AT-G-AAAGGTGCCAA
137314 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGC
59 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAA-GTGCCAATGTGCTGAGTCAAGGC
* * * *
137379 CAGCTACATTGGACTTAAAGATAAAAGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGGCTT
123 CAGCTACATTGGACTTAAAGATAAAAGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTT
137444 AATGG
188 AATGG
** * *
137449 TGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAAT
1 AAAAGGTGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTT----AT-G-AAAGGTGCCAAT
*
137514 ATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G--GTGCCAATGTGCTGAGTCAAGGCCA
60 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGTGCCAATGTGCTGAGTCAAGGCCA
* * *
137574 GCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAA
125 GCTACATTGGACTTAAAGATAAAAGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTT--
137639 AGATGG
188 A-ATGG
* * *
137645 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-T-AAAGGTGCCAATGTGCTG
1 AAAAGGTGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTATGAAAGGTGCCAATATGCTG
* * * * * *
137707 AGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGTTGATTCAAGGCCAGCTAT
66 ATTCAAGGCCAGCTATATTGGACTTAAAGATGAAG-TGCCAATGTGCTGAGTCAAGGCCAGCTAC
*
137772 ATTGGGCTTA
130 ATTGGACTTA
137782 GAAGGGTTGC
Statistics
Matches: 295, Mismatches: 29, Indels: 25
0.85 0.08 0.07
Matches are distributed among these distances:
187 39 0.13
188 2 0.01
189 1 0.00
190 2 0.01
192 1 0.00
193 115 0.39
195 2 0.01
196 41 0.14
197 1 0.00
198 2 0.01
199 85 0.29
200 4 0.01
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (192 bp):
AAAAGGTGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTATGAAAGGTGCCAATATGCTG
ATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGTGCCAATGTGCTGAGTCAAGGCCAGCTACA
TTGGACTTAAAGATAAAAGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTAATGG
Done.