Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold629
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 578285
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 2 of 5
Found at i:137825 original size:33 final size:35
Alignment explanation
Indices: 137781--137851 Score: 128
Period size: 33 Copynumber: 2.1 Consensus size: 35
137771 TATTGGGCTT
137781 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-GGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
137815 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTAGGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
137849 AGA
1 AGA
137852 GAGAAAGATG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 26 0.72
34 10 0.28
ACGTcount: A:0.21, C:0.17, G:0.37, T:0.25
Consensus pattern (35 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
Found at i:137910 original size:71 final size:67
Alignment explanation
Indices: 137835--138729 Score: 664
Period size: 71 Copynumber: 13.6 Consensus size: 67
137825 CACCGACTTG
* *
137835 TGTGGGCTTTAGGAAGAGAGAAAGATGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCA
1 TGTGGGCTTTA--AAGAGAAAAAGATGCCACGGAGTTGTGGGCTTAAAA--GAAAAAGAGTGCCA
137900 CGGAGT
62 CGGAGT
* * * *
137906 TGTGGGCTTTAAAGGAAAAAAAAAGTGCCACGGAGTTGTGGACTTACAGATGAAAAA-AGTGCCA
1 TGTGGGCTTTAAA-GAGAAAAAGA-TGCCACGGAGTTGTGGGCTTA-A-AAGAAAAAGAGTGCCA
137970 CGGAGT
62 CGGAGT
* * * * *
137976 TATGGGC-TTAAA-AG-----GGTGCCACGGAGTTGTGGGCTTAGAAGGAAGAAGAGTGCCACAG
1 TGTGGGCTTTAAAGAGAAAAAGATGCCACGGAGTTGTGGGCTTA-AAAGAAAAAGAGTGCCACGG
138034 AGT
65 AGT
* * *
138037 TGTGGGC-TT-AGGAGGAAAAAGAGTGCCATGGAGTTGTGGGCTT----TAAAAAGAGTGCCACG
1 TGTGGGCTTTAAAGA-GAAAAAGA-TGCCACGGAGTTGTGGGCTTAAAAGAAAAAGAGTGCCACG
138096 GAGT
64 GAGT
* * * ** * *
138100 CGTGGGCTTTGAAA-AGAAGAAGGTGCCATAGAGTTGTGGGCTTTGAAAAGAAGAAG-GTGCCAT
1 TGTGGGCTTT-AAAGAGAAAAAGATGCCACGGAGTTGTGGGC-TT-AAAAGAAAAAGAGTGCCAC
*
138163 GGAGC
63 GGAGT
* * * * *
138168 TGTGGGCTTTAAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTT------TAAAGAGTGCCATGGA
1 TGTGGGCTTTAAAGAGAAAAAGATGCCACGGAGTTGTGGGCTTAAAAGAAAAAGAGTGCCACGGA
138227 GT
66 GT
* * *
138229 CGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCA
1 TGTGGGCTTTAAAGAGAAAAAGATGCCACGGAGTTGTGGGC-TT-AAAA--GAAAAAGAGTGCCA
*
138294 CAGAGT
62 CGGAGT
* * *
138300 TGTGGGCTTTGAAA-AGAAGAAGGTGCCACGGAGTTGTGGGCTT------TAAAGAGTGCCACGG
1 TGTGGGCTTT-AAAGAGAAAAAGATGCCACGGAGTTGTGGGCTTAAAAGAAAAAGAGTGCCACGG
138358 AGT
65 AGT
*
138361 CGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAG-GTGCC
1 TGTGGGCTTT--AAAGAGAAAAAGA-TGCCACGGAGTTGTGGGC-TTAAA-AGAAAAAGAGTGCC
138425 ACGGAGT
61 ACGGAGT
* *
138432 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAG-GTGCCA
1 TGTGGGCTTT--AAAGAGAAAAAGA-TGCCACGGAGTTGTGGGC-TTAAAAGAAAAAGAGTGCCA
138496 CGGAGT
62 CGGAGT
* * * * *
138502 TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTTGACTTAAAGATGAAAAA-AGTGCCACA
1 TGTGGGCTTTAAAGAGAAAAAGATGCCACGGAGTTGTGGGCTTAAA-A-GAAAAAGAGTGCCACG
*
138566 GAAT
64 GAGT
* * *
138570 TGTGGGCTTTAAA-AG-----GGTGCCACGGAGTTGTGGACTTAAAGATGGAAGAA-AGTGCCAC
1 TGTGGGCTTTAAAGAGAAAAAGATGCCACGGAGTTGTGGGCTTAAA-A--GAAAAAGAGTGCCAC
*
138628 GGAAT
63 GGAGT
* * *
138633 TGTGGGCTTTAAA-AG-----GGTGCCACGGAGTTGTGGACTTAAAAGGAACAAG-GTGCCACGG
1 TGTGGGCTTTAAAGAGAAAAAGATGCCACGGAGTTGTGGGCTTAAAA-GAAAAAGAGTGCCACGG
138691 AGT
65 AGT
* * *
138694 TGTGGCCTTT-AA-AGAAAAA-ATGCCACTGAGTCGTGG
1 TGTGGGCTTTAAAGAGAAAAAGATGCCACGGAGTTGTGG
138730 ACTTTGAGAC
Statistics
Matches: 697, Mismatches: 71, Indels: 119
0.79 0.08 0.13
Matches are distributed among these distances:
60 14 0.02
61 142 0.20
62 33 0.05
63 104 0.15
64 42 0.06
65 3 0.00
66 6 0.01
67 25 0.04
68 102 0.15
69 12 0.02
70 58 0.08
71 147 0.21
72 8 0.01
73 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.21
Consensus pattern (67 bp):
TGTGGGCTTTAAAGAGAAAAAGATGCCACGGAGTTGTGGGCTTAAAAGAAAAAGAGTGCCACGGA
GT
Found at i:137923 original size:34 final size:34
Alignment explanation
Indices: 137835--138734 Score: 665
Period size: 34 Copynumber: 27.3 Consensus size: 34
137825 CACCGACTTG
*
137835 TGTGGGCTTTAGGAAGAGAGAAAGA-TGCCACGGAGT
1 TGTGGGCTTTA--AAG-GAAAAAGAGTGCCACGGAGT
* *
137871 TGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAA-GGAAAAAGAGTGCCACGGAGT
*
137906 TGTGGGCTTTAAAGGAAAAAAAAAGTGCCACGGAGT
1 TGTGGGCTTTAAAGG--AAAAAGAGTGCCACGGAGT
* *
137942 TGTGGAC-TTACAGATGAAAAA-AGTGCCACGGAGT
1 TGTGGGCTTTA-A-AGGAAAAAGAGTGCCACGGAGT
* *
137976 TATGGGC-TT------AAAAGGGTGCCACGGAGT
1 TGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGT
* *
138003 TGTGGGC-TTAGAAGGAAGAAGAGTGCCACAGAGT
1 TGTGGGCTTTA-AAGGAAAAAGAGTGCCACGGAGT
* *
138037 TGTGGGC-TTAGGAGGAAAAAGAGTGCCATGGAGT
1 TGTGGGCTTTA-AAGGAAAAAGAGTGCCACGGAGT
138071 TGTGGGCTTT-----AAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGT
* * * **
138100 CGTGGGCTTTGAAAAGAAGAAG-GTGCCATAGAGT
1 TGTGGGCTTT-AAAGGAAAAAGAGTGCCACGGAGT
* * * *
138134 TGTGGGCTTTGAAAAGAAGAAG-GTGCCATGGAGC
1 TGTGGGCTTT-AAAGGAAAAAGAGTGCCACGGAGT
* *
138168 TGTGGGCTTTAAAAAGAAGAAG-GTGCCACGGAGT
1 TGTGGGCTTT-AAAGGAAAAAGAGTGCCACGGAGT
*
138202 TGTGGGCTTT-------AAAGAGTGCCATGGAGT
1 TGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGT
* *
138229 CGTGGGCTTTAAACAGAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAA-GGAAAAAGAGTGCCACGGAGT
*
138263 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGT
1 TGTGGGCTTT--AAA-GGAAAAAGAGTGCCACGGAGT
* *
138300 TGTGGGCTTTGAAAAGAAGAAG-GTGCCACGGAGT
1 TGTGGGCTTT-AAAGGAAAAAGAGTGCCACGGAGT
138334 TGTGGGCTTT-------AAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGT
*
138361 CGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT--AAAG-GAAAAAGAGTGCCACGGAGT
*
138398 TGTGGGCTTTAAACAGAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAA-GGAAAAAGAGTGCCACGGAGT
*
138432 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGT
1 TGTGGGCTTT--AAA-GGAAAAAGAGTGCCACGGAGT
*
138469 TGTGGGCTTTAAAAGAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGT
*
138502 TGTGGGCTTTAAAAAGAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTT-AAAGGAAAAAGAGTGCCACGGAGT
* * * *
138536 TGTTGAC-TTAAAGATGAAAAA-AGTGCCACAGAAT
1 TGTGGGCTTTAAAG--GAAAAAGAGTGCCACGGAGT
*
138570 TGTGGGCTTT------AAAAGGGTGCCACGGAGT
1 TGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGT
* * * *
138598 TGTGGACTTAAAGATGGAAGAA-AGTGCCACGGAAT
1 TGTGGGCTTTAA-A-GGAAAAAGAGTGCCACGGAGT
*
138633 TGTGGGCTTT------AAAAGGGTGCCACGGAGT
1 TGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGT
* * *
138661 TGTGGACTTAAAAGGAACAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGT
* *
138694 TGTGGCCTTTAAA-GAAAAA-A-TGCCACTGAGT
1 TGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGT
* *
138725 CGTGGACTTT
1 TGTGGGCTTT
138735 GAGACAAAAT
Statistics
Matches: 714, Mismatches: 80, Indels: 145
0.76 0.09 0.15
Matches are distributed among these distances:
26 10 0.01
27 68 0.10
28 37 0.05
29 27 0.04
31 18 0.03
32 8 0.01
33 46 0.06
34 288 0.40
35 82 0.11
36 60 0.08
37 70 0.10
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.21
Consensus pattern (34 bp):
TGTGGGCTTTAAAGGAAAAAGAGTGCCACGGAGT
Found at i:137996 original size:27 final size:27
Alignment explanation
Indices: 137964--138017 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
137954 GATGAAAAAA
137964 GTGCCACGGAGTTATGGGCTTAAAAGG
1 GTGCCACGGAGTTATGGGCTTAAAAGG
* *
137991 GTGCCACGGAGTTGTGGGCTTAGAAGG
1 GTGCCACGGAGTTATGGGCTTAAAAGG
138018 AAGAAGAGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.15, G:0.41, T:0.22
Consensus pattern (27 bp):
GTGCCACGGAGTTATGGGCTTAAAAGG
Found at i:138018 original size:97 final size:96
Alignment explanation
Indices: 137887--138637 Score: 361
Period size: 98 Copynumber: 7.6 Consensus size: 96
137877 CTTAAAAGGG
*
137887 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAAAAAGTGCCACGGAGTTGTGGACTTA
1 AAAAAGAGTGCCACGGAGTTGTGGGC-TTAAAGG--AAAAAAAGTGCCACAGAGTTGTGGACTTA
*
137952 CAGATGAAAAA-AGTGCCACGGAGTTATGGGC-TT
63 -AGAGGAAAAAGAGTGCCACGGAGTTATGGGCTTT
* * * * *
137985 -AAAAGGGTGCCACGGAGTTGTGGGCTTAGAAGGAAGAAGAGTGCCACAGAGTTGTGGGCTTAGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTA-AAGGAAAAAAAGTGCCACAGAGTTGTGGACTTAAG
* *
138049 AGGAAAAAGAGTGCCATGGAGTTGTGGGCTTT
65 AGGAAAAAGAGTGCCACGGAGTTATGGGCTTT
* * * * * *
138081 AAAAAGAGTGCCACGGAGTCGTGGGCTTTGAAAAG-AAGAAGGTGCCATAGAGTTGTGGGCTTTG
1 AAAAAGAGTGCCACGGAGTTGTGGGC-TT-AAAGGAAAAAAAGTGCCACAGAGTTGTGGAC-TT-
* * * * *
138145 AA-AAGAAGAAG-GTGCCATGGAGCTGTGGGCTTT
62 AAGAGGAAAAAGAGTGCCACGGAGTTATGGGCTTT
** * *
138178 AAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAA-G------AGTGCCATGGAGTCGTGGGC
1 --AAA-AAG-A-GTGCCACGGAGTTGTGGGC-TTAAAGGAAAAAAAGTGCCACAGAGTTGTGGAC
* *
138236 TTTAA-ACAGAAAAAG-GTGCCACGGAGTTGTGGGCTTT
60 -TTAAGA-GGAAAAAGAGTGCCACGGAGTTATGGGCTTT
* * * * *
138273 GAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAAAAG-AAGAAGGTGCCACGGAGTTGT
1 --------AAAAAGAGTGCCACGGAGTTGTGGGC-TT-AAAGGAAAAAAAGTGCCACAGAGTTGT
* * **
138337 GGGCTT-------TAAAGAGTGCCACGGAGTCGTGGGCTTT
56 GGACTTAAGAGGAAAAAGAGTGCCACGGAGTTATGGGCTTT
* * *
138371 GAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-CAGAAAAAGGTGCCACGGAGTTGT
1 --------AAAAAGAGTGCCACGGAGTTGTGGGC-TTAAAGGA-AAAAAAGTGCCACAGAGTTGT
* * * *
138435 GGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTT
56 GGAC-TT-AAGA-GGAAAAAGAGTGCCACGGAGTTATGGGCTTT
* * *
138479 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAA--AAGAAAAAGGTGCCACGGAGTTGTTGA
1 --AA-AAAGA-GTGCCACGGAGTTGTGGGC-TTAAAGGAA-AAAAA-GTGCCACAGAGTTGTGGA
* * * *
138542 CTTAAAGATGAAAAA-AGTGCCACAGAATTGTGGGCTTT
59 CTT-AAGAGGAAAAAGAGTGCCACGGAGTTATGGGCTTT
* * * * * *
138580 -AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGGAAGAAAGTGCCACGGAATTGTGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTAAAG--GAAAAAAAGTGCCACAGAGTTGTGG
138638 GCTTTAAAAG
Statistics
Matches: 546, Mismatches: 59, Indels: 97
0.78 0.08 0.14
Matches are distributed among these distances:
94 11 0.02
95 95 0.17
96 23 0.04
97 117 0.21
98 120 0.22
99 12 0.02
100 8 0.01
101 29 0.05
102 31 0.06
103 14 0.03
104 44 0.08
105 17 0.03
108 25 0.05
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.21
Consensus pattern (96 bp):
AAAAAGAGTGCCACGGAGTTGTGGGCTTAAAGGAAAAAAAGTGCCACAGAGTTGTGGACTTAAGA
GGAAAAAGAGTGCCACGGAGTTATGGGCTTT
Found at i:138028 original size:61 final size:62
Alignment explanation
Indices: 137930--138706 Score: 490
Period size: 61 Copynumber: 11.9 Consensus size: 62
137920 GAAAAAAAAA
* * * *
137930 GTGCCACGGAGTTGTGGACTTACAGATGAAAAAAGTGCCACGGAGTTATGGGC-TT-AAAAG-G
1 GTGCCACGGAGTTGTGGGCTTA-A-AGGAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAG
*
137991 GTGCCACGGAGTTGTGGGCTTAGAAGGAAGAAGAGTGCCACAGAGTTGTGGGC-TTAGGAGGAAA
1 GTGCCACGGAGTTGTGGGCTTA-AAGGAA-AAGAGTGCCACGGAGTTGTGGGCTTTA--A--AAA
*
138055 AAG
60 GAG
* * *
138058 AGTGCCATGGAGTTGTGGGCTT-TA--AAAAGAGTGCCACGGAGTCGTGGGCTTTGAAAAGAAGA
1 -GTGCCACGGAGTTGTGGGCTTAAAGGAAAAGAGTGCCACGGAGTTGTGGGCTTT--AAA-AAG-
138120 AG
61 AG
** * * *
138122 GTGCCATAGAGTTGTGGGCTTTGAAAAGAAGAAG-GTGCCATGGAGCTGTGGGCTTTAAAAAGAA
1 GTGCCACGGAGTTGTGGGC-TT-AAAGGAA-AAGAGTGCCACGGAGTTGTGGGCTTT--AAA-AA
138186 GAAG
60 G-AG
* * * *
138190 GTGCCACGGAGTTGTGGGCTT-----TAAAGAGTGCCATGGAGTCGTGGGCTTTAAACAGAAAAA
1 GTGCCACGGAGTTGTGGGCTTAAAGGAAAAGAGTGCCACGGAGTTGTGGGCTTT--A-A-AAAGA
138250 G
62 G
*
138251 GTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAAAAG
1 GTGCCACGGAGTTGTGGGC-TT--AAA-GG-AAAAGAGTGCCACGGAGTTGTGGGCTTT--AAA-
138316 AAGAAG
58 AAG-AG
* *
138322 GTGCCACGGAGTTGTGGGCTT-----TAAAGAGTGCCACGGAGTCGTGGGCTTTGAAAAGAGAAA
1 GTGCCACGGAGTTGTGGGCTTAAAGGAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA-AG---
138382 AAG
61 -AG
*
138385 AGTGCCACGGAGTTGTGGGCTTTAAACAGAAAA-AGGTGCCACGGAGTTGTGGGCTTTGAAAAGG
1 -GTGCCACGGAGTTGTGGGC-TTAAA-GGAAAAGA-GTGCCACGGAGTTGTGGGCTTT---AA--
*
138449 GAAAAAG
57 -AAAGAG
* *
138456 AGTGCCACAGAGTTGTGGGCTTTAAAAGAAAA-AGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 -GTGCCACGGAGTTGTGGGC-TTAAAGGAAAAGA-GTGCCACGGAGTTGTGGGCTTTAAAAAG--
138520 AAAG
61 --AG
* * * * *
138524 GTGCCACGGAGTTGTTGACTTAAAGATGAAAAAAGTGCCACAGAATTGTGGGCTTT-AAAAG-G
1 GTGCCACGGAGTTGTGGGCTTAAAG--GAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAG
* *
138586 GTGCCACGGAGTTGTGGACTTAAAGATGGAAGAA-AGTGCCACGGAATTGTGGGCTTT-AAAAG-
1 GTGCCACGGAGTTGTGGGCTT-AA-A-GGAA-AAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGA
138648 G
62 G
* *
138649 GTGCCACGGAGTTGTGGACTTAAAAGGAACAAG-GTGCCACGGAGTTGTGGCCTTTAAA
1 GTGCCACGGAGTTGTGGGCTT-AAAGGAA-AAGAGTGCCACGGAGTTGTGGGCTTTAAA
138707 GAAAAAATGC
Statistics
Matches: 600, Mismatches: 51, Indels: 129
0.77 0.07 0.17
Matches are distributed among these distances:
59 1 0.00
60 12 0.02
61 140 0.23
62 30 0.05
63 102 0.17
64 35 0.06
65 3 0.00
66 11 0.02
67 26 0.04
68 96 0.16
69 5 0.01
70 36 0.06
71 98 0.16
73 2 0.00
75 1 0.00
76 2 0.00
ACGTcount: A:0.31, C:0.13, G:0.35, T:0.21
Consensus pattern (62 bp):
GTGCCACGGAGTTGTGGGCTTAAAGGAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAG
Found at i:138228 original size:27 final size:27
Alignment explanation
Indices: 138190--138241 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
138180 AAAGAAGAAG
*
138190 GTGCCACGGAGTTGTGGGCTTTAAAGA
1 GTGCCACGGAGTCGTGGGCTTTAAAGA
*
138217 GTGCCATGGAGTCGTGGGCTTTAAA
1 GTGCCACGGAGTCGTGGGCTTTAAA
138242 CAGAAAAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.21, C:0.15, G:0.37, T:0.27
Consensus pattern (27 bp):
GTGCCACGGAGTCGTGGGCTTTAAAGA
Found at i:138351 original size:132 final size:129
Alignment explanation
Indices: 137836--138768 Score: 783
Period size: 132 Copynumber: 7.1 Consensus size: 129
137826 ACCGACTTGT
* * *
137836 GTGGGCTTTAGGAAGAGAGAAAGATGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCAC
1 GTGGGCTTTA--AA-AGAAAAAGGTGCCACGGAGTTGTGGGCTTAAAA-GGAAAAAGAGTGCCAC
* * * * * *
137901 GGAGTTGTGGGCTTTAAAGGAAAAAAAAAGTGCCACGGAGTTGTGGACTTACAGATGAAAAAAGT
62 AGAGTTGTGGGCTTTGAA--AAGAAAAAGGTGCCACGGAGTTGTGGGCTT-----T-AAAAGAGT
*
137966 GCCACGGAGTT
119 GCCACGGAGTC
* * *
137977 ATGGGC-TTAAAAG-----GGTGCCACGGAGTTGTGGGCTTAGAAGGAAGAAGAGTGCCACAGAG
1 GTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGAGTGCCACAGAG
* * * *
138036 TTGTGGGCTTAG-GAGGAAAAAGAGTGCCATGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGT
66 TTGTGGGCTTTGAAAAGAAAAAG-GTGCCACGGAGTTGTGGGCTTT-AAAAGAGTGCCACGGAGT
138100 C
129 C
* ** * **
138101 GTGGGCTTTGAAAAGAAGAAGGTGCCATAGAGTTGTGGGCTTTGAAAA-GAAGAAG-GTGCCATG
1 GTGGGCTTT-AAAAGAAAAAGGTGCCACGGAGTTGTGGGC-TT-AAAAGGAAAAAGAGTGCCACA
* * * *
138164 GAGCTGTGGGCTTTAAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTT-AAAGAGTGCCATGGAG
63 GAGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGAGTGCCACGGAG
138228 TC
128 TC
138230 GTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCAC
1 GTGGGCTTTAAA-AGAAAAAGGTGCCACGGAGTTGTGGGC-TT-AAAA-GGAAAAAGAGTGCCAC
*
138295 AGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTT-AAAGAGTGCCACGGA
62 AGAGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGAGTGCCACGGA
138359 GTC
127 GTC
138362 GTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACA-GAAAAAG-GTGCC
1 GTGGGCTTT--AAA-AGAAAAAG-GTGCCACGGAGTTGTGGGC-TTAAA-AGGAAAAAGAGTGCC
* *
138425 ACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAG
60 ACAGAGTTGTGGGCTTTGAAAA--GAAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAG----A-
*
138490 GTGCCACGGAGTT
117 GTGCCACGGAGTC
* * *
138503 GTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTTGACTTAAAGATGAAAAA-AGTGCCACAG
1 GTGGGCTTT-AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTAAA-AGGAAAAAGAGTGCCACAG
* * *
138567 AATTGTGGGCTTT-AAAAG-----GGTGCCACGGAGTTGTGGACTTAAAGATGGAAGAAAGTGCC
64 AGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTT-TA-A---AAG--AGTGCC
* *
138626 ACGGAATT
122 ACGGAGTC
* * *
138634 GTGGGCTTTAAAAG-----GGTGCCACGGAGTTGTGGACTTAAAAGGAACAAG-GTGCCACGGAG
1 GTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGAGTGCCACAGAG
* * * * * * *
138693 TTGTGGCCTTT--AAAGAAAAA-ATGCCACTGAGTCGTGGACTTTGAGACAA-AATGCCACTGAG
66 TTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTT-A-A-AAGAGTGCCACGGAG
138754 TC
128 TC
*
138756 GTGGACTTTAAAA
1 GTGGGCTTTAAAA
138769 AGGTATTTGA
Statistics
Matches: 680, Mismatches: 70, Indels: 103
0.80 0.08 0.12
Matches are distributed among these distances:
122 22 0.03
123 4 0.01
124 48 0.07
125 28 0.04
126 5 0.01
127 21 0.03
128 9 0.01
129 96 0.14
130 7 0.01
131 113 0.17
132 146 0.21
133 10 0.01
134 23 0.03
135 45 0.07
136 4 0.01
137 12 0.02
138 45 0.07
139 8 0.01
140 8 0.01
141 26 0.04
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.21
Consensus pattern (129 bp):
GTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGAGTGCCACAGAG
TTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGAGTGCCACGGAGTC
Found at i:138353 original size:98 final size:95
Alignment explanation
Indices: 137855--138706 Score: 580
Period size: 97 Copynumber: 8.7 Consensus size: 95
137845 AGGAAGAGAG
*
137855 AAAGA-TGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAA--GAAAAAG-GTGCCACGGAGTTGTGGGCTTTAA
* * * *
137918 AGGAAAAAAAAAGTGCCACGGAGTTGTGGACTTACAGATGA
63 A--CAGAAAAAGGTGCCACGGAGTTGTGGGCTT-----T-A
* *
137959 AAAAAGTGCCACGGAGTTATGGGC-TTAAAAG-----GGTGCCACGGAGTTGTGGGC-TTAGAA-
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTA-AAC
* * * *
138016 GGAAGAAGAGTGCCACAGAGTTGTGGGCTTAGGAGGAA
65 AGAAAAAG-GTGCCACGGAGTTGTGGGCTT------TA
* * *
138054 AAAGAGTGCCATGGAGTTGTGGGCTTT--AA-AAAGA-GTGCCACGGAGTCGTGGGCTTTGAAA-
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAC
* **
138114 AGAAGAAGGTGCCATAGAGTTGTGGGCTTTGAAA
65 AGAAAAAGGTGCCACGGAGTTGTGGGCTTT---A
* * *
138148 AGAAGAAGGTGCCATGGAGCTGTGGGCTTTAAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTT-
1 A-AAG-A-GTGCCACGGAGTTGTGGGCTTT-AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTA
* *
138212 AA-AG----A-GTGCCATGGAGTCGTGGGCTTTA
62 AACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTA
*
138240 AACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGG
1 AA-AG----A-GTGCCACGGAGTTGTGGGCTTT-AAAA--GAAAAAG-GTGCCACGGAGTTGTGG
*
138305 GCTTTGAAA-AGAAGAAGGTGCCACGGAGTTGTGGGCTTT-
56 GCTTT-AAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTA
*
138344 AAAGAGTGCCACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT--AAA-AGAAAAAG-GTGCCACGGAGTTGTGGGCTTTA
138409 AACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
62 AACAGAAAAAGGTGCCACGGAGTTGTGGGCTTT---------A
* *
138452 AAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAACA
* *
138517 GAAAAAGGTGCCACGGAGTTGTTGACTTAAAGATGA
66 GAAAAAGGTGCCACGGAGTTGTGGGCTT-----T-A
* * * * *
138553 AAAAAGTGCCACAGAATTGTGGGCTTTAAAAG-----GGTGCCACGGAGTTGTGGAC-TTAAAGA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAACA
*
138612 TGGAAGAAA-GTGCCACGGAATTGTGGGCTTTA
66 --GAA-AAAGGTGCCACGGAGTTGTGGGCTTTA
* * * *
138644 AAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGAACAAGGTGCCACGGAGTTGTGGCCTTTAAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GAAAAAGGTGCCACGGAGTTGTGGGCTTTAAA
138707 GAAAAAATGC
Statistics
Matches: 627, Mismatches: 56, Indels: 137
0.76 0.07 0.17
Matches are distributed among these distances:
90 6 0.01
91 22 0.04
92 5 0.01
94 8 0.01
95 97 0.15
96 47 0.07
97 115 0.18
98 115 0.18
99 5 0.01
100 11 0.02
101 34 0.05
102 21 0.03
103 3 0.00
104 59 0.09
105 50 0.08
106 3 0.00
108 25 0.04
109 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.21
Consensus pattern (95 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAACA
GAAAAAGGTGCCACGGAGTTGTGGGCTTTA
Found at i:138646 original size:63 final size:63
Alignment explanation
Indices: 138518--138706 Score: 285
Period size: 63 Copynumber: 3.0 Consensus size: 63
138508 CTTTAAAAAG
* * *
138518 AAAAAGGTGCCACGGAGTTGTTGACTTAAAGAT-GAAAAAAGTGCCACAGAATTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGGAAAAAAGTGCCACGGAATTGTGGGCTTT
*
138580 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGGAAGAAAGTGCCACGGAATTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGGAAAAAAGTGCCACGGAATTGTGGGCTTT
* * * *
138643 AAAAGGGTGCCACGGAGTTGTGGACTTAAA-A-GGAACAAGGTGCCACGGAGTTGTGGCCTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGGAAAAAAGTGCCACGGAATTGTGGGCTTT
138704 AAA
1 AAA
138707 GAAAAAATGC
Statistics
Matches: 118, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
61 29 0.25
62 32 0.27
63 57 0.48
ACGTcount: A:0.32, C:0.14, G:0.32, T:0.22
Consensus pattern (63 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGGAAAAAAGTGCCACGGAATTGTGGGCTTT
Found at i:138745 original size:30 final size:31
Alignment explanation
Indices: 138650--138767 Score: 121
Period size: 30 Copynumber: 3.8 Consensus size: 31
138640 TTTAAAAGGG
* * * **
138650 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGG
1 TGCCACTGAGTCGTGGACTTTAAA-GAA-AAAA
* * *
138683 TGCCACGGAGTTGTGGCCTTTAAAGAAAAAA
1 TGCCACTGAGTCGTGGACTTTAAAGAAAAAA
* *
138714 TGCCACTGAGTCGTGGACTTT-GAGACAAAA
1 TGCCACTGAGTCGTGGACTTTAAAGAAAAAA
138744 TGCCACTGAGTCGTGGACTTTAAA
1 TGCCACTGAGTCGTGGACTTTAAA
138768 AAGGTATTTG
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
30 28 0.38
31 21 0.28
32 3 0.04
33 22 0.30
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.23
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTAAAGAAAAAA
Found at i:140062 original size:19 final size:19
Alignment explanation
Indices: 140040--140083 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
140030 TGATTTTGCC
*
140040 TTTGCACCCT-TTTTTTTTT
1 TTTG-ACCCTCTTTTTTGTT
*
140059 TTTGACTCTCTTTTTTGTT
1 TTTGACCCTCTTTTTTGTT
140078 TTTGAC
1 TTTGAC
140084 TTTTGTTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.07, C:0.18, G:0.09, T:0.66
Consensus pattern (19 bp):
TTTGACCCTCTTTTTTGTT
Found at i:147099 original size:52 final size:51
Alignment explanation
Indices: 147014--147137 Score: 196
Period size: 52 Copynumber: 2.4 Consensus size: 51
147004 ATATGAAAAG
* *
147014 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAA
147065 TTTGCCTGCATGTATCGATACATTTTAA-AATGTATCGATACATCTGGGCAAA
1 -TTGCCTGCATGTATCGATACA-TTTAATAATGTATCGATACATCTGGGCAAA
*
147117 TTGTCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
147138 AAGATCAGTG
Statistics
Matches: 68, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
51 20 0.29
52 43 0.63
53 5 0.07
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAA
Found at i:147150 original size:51 final size:50
Alignment explanation
Indices: 147014--147157 Score: 168
Period size: 52 Copynumber: 2.8 Consensus size: 50
147004 ATATGAAAAG
* *
147014 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA--AAATAGTGTATCGATACATCTGGGCAAAT
147066 TTGCCTGCATGTATCGATACATTTTAAA-A-TGTATCGATACATCTGGGCAAA-
1 TTGCCTGCATGTATCGATACA----AAATAGTGTATCGATACATCTGGGCAAAT
*
147117 TTGTCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACAAA-AT-AGTGTATCGATACA
147158 ATGTATCGAT
Statistics
Matches: 83, Mismatches: 3, Indels: 13
0.84 0.03 0.13
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
50 1 0.01
51 32 0.39
52 42 0.51
53 1 0.01
54 4 0.05
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (50 bp):
TTGCCTGCATGTATCGATACAAAATAGTGTATCGATACATCTGGGCAAAT
Found at i:147164 original size:13 final size:13
Alignment explanation
Indices: 147146--147170 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
147136 CAAAGATCAG
147146 TGTATCGATACAA
1 TGTATCGATACAA
147159 TGTATCGATACA
1 TGTATCGATACA
147171 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:147248 original size:33 final size:33
Alignment explanation
Indices: 147211--147277 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
147201 AGTAGCTTAA
147211 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
147244 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
147277 A
1 A
147278 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:147251 original size:13 final size:13
Alignment explanation
Indices: 147233--147257 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
147223 CAAAAAAATA
147233 TGTATCGATACAT
1 TGTATCGATACAT
147246 TGTATCGATACA
1 TGTATCGATACA
147258 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:151490 original size:13 final size:13
Alignment explanation
Indices: 151446--151497 Score: 61
Period size: 13 Copynumber: 3.8 Consensus size: 13
151436 TTTTCACAAT
151446 TTGTATCGATACA
1 TTGTATCGATACA
*
151459 TTGTTCATTG-TATCA
1 TTG-T-ATCGATA-CA
151474 TTGTATCGATACA
1 TTGTATCGATACA
151487 TTGTATCGATA
1 TTGTATCGATA
151498 TATTCTGGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
13 19 0.58
14 6 0.18
15 8 0.24
ACGTcount: A:0.27, C:0.13, G:0.15, T:0.44
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:151543 original size:20 final size:19
Alignment explanation
Indices: 151518--151590 Score: 101
Period size: 20 Copynumber: 3.7 Consensus size: 19
151508 TTACTTAGAA
151518 GTATCGATACATTTTGCATT
1 GTATCGATACATTTT-CATT
*
151538 GTATCGATACATTGCTCATT
1 GTATCGATACATT-TTCATT
*
151558 GTATCGATACATTTTACAAT
1 GTATCGATACATTTT-CATT
151578 GTATCGATACATT
1 GTATCGATACATT
151591 CAGGCATTTC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
19 1 0.02
20 46 0.96
21 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (19 bp):
GTATCGATACATTTTCATT
Found at i:153986 original size:52 final size:50
Alignment explanation
Indices: 153871--154037 Score: 226
Period size: 51 Copynumber: 3.3 Consensus size: 50
153861 TTTTCATCTT
* * * *
153871 GGGGATACTCCAATCCCGGTTTCATTTCCAAAACATCAATTTTTCTTAATC
1 GGGGATACTCCAAT-CCGATTTTATTTCCAAAACACCAATTTTTCATAATC
* *
153922 GGGGATACTCCAAGTCCGATTTTATTTCTAAAACACCCATTTTTCCATAATC
1 GGGGATACTCCAA-TCCGATTTTATTTCCAAAACACCAATTTTT-CATAATC
* *
153974 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAACTTTTCACAATC
1 GGGGATACTCCAA-TCCGATTTTATTTCCAAAACACCAATTTTTCATAATC
154025 GGGGATACTCCAA
1 GGGGATACTCCAA
154038 CCCCGTTATT
Statistics
Matches: 103, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
51 56 0.54
52 47 0.46
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (50 bp):
GGGGATACTCCAATCCGATTTTATTTCCAAAACACCAATTTTTCATAATC
Found at i:154139 original size:76 final size:76
Alignment explanation
Indices: 153974--154324 Score: 490
Period size: 76 Copynumber: 4.5 Consensus size: 76
153964 TTCCATAATC
* * *
153974 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAACTTTTCACAATCGGGGATACTCCAAC
1 GGGGATACTCCAAC-CCGATTTTATTTCTAAAACATCAA-TTTT-TCAATCGGGGATACTCCAAC
*
154039 CCCGTTATTTCTGA
63 CCCGTTATTTTTGA
*
154053 GGGGACACTCCAACCCTGATTTTATTTCTAAAACATCAATTTTTC-ATCGGGGATACTCCAACCC
1 GGGGATACTCCAACCC-GATTTTATTTCTAAAACATCAATTTTTCAATCGGGGATACTCCAACCC
154117 CGTTATTTTTGA
65 CGTTATTTTTGA
* *
154129 GGGGATACTCCAACCCCAATTTTATTTCTAAAACTTCAATTTTTC-ATCGGGGATACTCCAACCC
1 GGGGATACTCCAA-CCCGATTTTATTTCTAAAACATCAATTTTTCAATCGGGGATACTCCAACCC
154193 CGTTATTTTTGA
65 CGTTATTTTTGA
*
154205 GGGGATACTCCAATCCCGATTTTATTTCTAAAACATCAATTTTTCATAATCGGGAATACTCCAAC
1 GGGGATACTCCAA-CCCGATTTTATTTCTAAAACATCAATTTTTC--AATCGGGGATACTCCAAC
* *
154270 CCTGTTATTTTCGA
63 CCCGTTATTTTTGA
* * *
154284 GGGGATACACCAACCCCGGTTTTATTTCTAAAACACCAATT
1 GGGGATACTCCAA-CCCGATTTTATTTCTAAAACATCAATT
154325 CTCCACAATC
Statistics
Matches: 249, Mismatches: 18, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
76 141 0.57
77 4 0.02
78 6 0.02
79 98 0.39
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (76 bp):
GGGGATACTCCAACCCGATTTTATTTCTAAAACATCAATTTTTCAATCGGGGATACTCCAACCCC
GTTATTTTTGA
Found at i:154360 original size:51 final size:51
Alignment explanation
Indices: 154284--154399 Score: 133
Period size: 51 Copynumber: 2.3 Consensus size: 51
154274 TTATTTTCGA
* * * *
154284 GGGGATACACCAACCCCGGTTTTATTTCTAAAACACCAATTCTCCACAATC
1 GGGGACACTCCAACCCCGATTTTATTTCCAAAACACCAATTCTCCACAATC
* * * * * *
154335 GGGGACATTCCAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAATT
1 GGGGACACTCCAACCCCGATTTTATTTCCAAAACACCAATTCTCCACAATC
*
154386 GGGGATACTCCAAC
1 GGGGACACTCCAAC
154400 ATCGTTATTT
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (51 bp):
GGGGACACTCCAACCCCGATTTTATTTCCAAAACACCAATTCTCCACAATC
Found at i:154544 original size:158 final size:157
Alignment explanation
Indices: 154251--154556 Score: 357
Period size: 158 Copynumber: 1.9 Consensus size: 157
154241 CAATTTTTCA
* * * *
154251 TAATCGGGAATACTCCAACCCTGTTATTTTCGAGGGGATACACCAACCCCGGTTTTATTTCTAAA
1 TAATCGGGAATACTCCAACCCTGTTATTTCCAAGGGGATACACCAACCCCGGCTTTATTTCCAAA
* * ** *
154316 ACACCAATTCTCCACAATCGGGGACATTCCAACTCCGATTTTATTTCCAAAACACTAATTTTTCA
66 ACACCAATTCTCCACAATCAGGGACATTCCAACCCCGACCTTATTTCCAAAACACTAATTTCTCA
154381 CAATTGGGGATACTCCAACATCGTTATT
131 CAATTGGGGATAC-CCAACATCGTTATT
* * *
154409 TAATCGGGGATACTCTAA-CCTAGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATTTCCAA
1 TAATCGGGAATACTCCAACCCT-GTTATTTCCAAGGGGATACACCAACCCCGGCTTTATTTCCAA
* ** * * * * * *
154473 AATATTAATT-TCTCACAATCAGGGATACTT-CAACCCCGGCCTTATTTCTAAAAGATTGATTTC
65 AACACCAATTCTC-CACAATCAGGGACA-TTCCAACCCCGACCTTATTTCCAAAACACTAATTTC
*
154536 TCATAATTGGGGATACCCAAC
128 TCACAATTGGGGATACCCAAC
154557 CCCATTATTT
Statistics
Matches: 123, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
157 10 0.08
158 111 0.90
159 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (157 bp):
TAATCGGGAATACTCCAACCCTGTTATTTCCAAGGGGATACACCAACCCCGGCTTTATTTCCAAA
ACACCAATTCTCCACAATCAGGGACATTCCAACCCCGACCTTATTTCCAAAACACTAATTTCTCA
CAATTGGGGATACCCAACATCGTTATT
Found at i:154549 original size:51 final size:51
Alignment explanation
Indices: 154442--154559 Score: 157
Period size: 51 Copynumber: 2.3 Consensus size: 51
154432 TTATTTCCAA
* *
154442 GGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTAATTTCTCACAATC
1 GGGGATACTCCAACCCCGGCCTTATTTCCAAAAGATTAATTTCTCACAATC
* * * * * *
154493 AGGGATACTTCAACCCCGGCCTTATTTCTAAAAGATTGATTTCTCATAATT
1 GGGGATACTCCAACCCCGGCCTTATTTCCAAAAGATTAATTTCTCACAATC
154544 GGGGATAC-CCAACCCC
1 GGGGATACTCCAACCCC
154560 ATTATTTTCA
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 7 0.12
51 50 0.88
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGGCCTTATTTCCAAAAGATTAATTTCTCACAATC
Found at i:154744 original size:129 final size:127
Alignment explanation
Indices: 154410--154746 Score: 336
Period size: 129 Copynumber: 2.6 Consensus size: 127
154400 ATCGTTATTT
* * * *
154410 AATCGGGGATACTCTAACCTAGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATTTCCAAAA
1 AATCGGGGATACTCCAACC-CGTTATTTTC-AGGGGATACTCCAACCCC-GTTTTATTTCCAAAA
* * ** *
154475 TATTAATTTCTCACAATCAGGGATACTTCAACCCCGGCCTTATTTCTAAAAGATTGATTTCTCAT
63 TATTAATTTCTCACAATCAGGGACACTTCAACCCCGGCCTTATTTCTAAAACATCAATTTCTCAC
* * ** ***
154540 AATTGGGGATAC-CCAACCCCATTATTTTCACGGGGATACTCCAATCCCATTTTTATTTTTGAAA
1 AATCGGGGATACTCCAA-CCCGTTATTTTCA-GGGGATACTCCAA-CCCCGTTTTATTTCCAAAA
* * * * ** * *
154604 CATCTATTTTCT-ATAATCGGGGACACTTCAACCCTTGCCTTATTTCTAAATCATCAATTTTTCA
63 TAT-TAATTTCTCACAATCAGGGACACTTCAACCCCGGCCTTATTTCTAAAACATCAATTTCTCA
154668 C
127 C
* *
154669 AATCGGGGATACTCCAACCCGTTATTTTCGAGGGGATACTCAAACCCCGTTATTATCTCCAAAAT
1 AATCGGGGATACTCCAACCCGTTATTTTC-AGGGGATACTCCAACCCCGTT-TTATTTCCAAAAT
154734 ATTAAATTTCTCA
64 ATT-AATTTCTCA
154747 TAGGGAGATG
Statistics
Matches: 163, Mismatches: 35, Indels: 18
0.75 0.16 0.08
Matches are distributed among these distances:
128 7 0.04
129 127 0.78
130 29 0.18
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.34
Consensus pattern (127 bp):
AATCGGGGATACTCCAACCCGTTATTTTCAGGGGATACTCCAACCCCGTTTTATTTCCAAAATAT
TAATTTCTCACAATCAGGGACACTTCAACCCCGGCCTTATTTCTAAAACATCAATTTCTCAC
Found at i:160871 original size:43 final size:41
Alignment explanation
Indices: 160823--161110 Score: 168
Period size: 45 Copynumber: 6.6 Consensus size: 41
160813 GCACCTCCTA
*
160823 GTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCCTCCCTCTT
1 GTCCTCAAAGAGCAGGATGCA-TTTATTTTCCTCTTCCCT-TT
*
160866 GTCCTCAAAGAGCAGGACGCATTTCA-TTTCCTTCTTTTCCCTTTT
1 GTCCTCAAAGAGCAGGATGCATTT-ATTTTCC-TC--TTCCC-TTT
* * *
160911 GTCTTCAAAGAGTAGGATGCATTTTATTTTCCTTTTCTCCTTT
1 GTCCTCAAAGAGCAGGATGCA-TTTATTTTCCTCTTC-CCTTT
** * * *
160954 GTCCTCAAAGAGCAGGACACGTTCCA-TTTCCTTCTTTTGTCCTTTT
1 GTCCTCAAAGAGCAGGATGCATT-TATTTTCC-TC---T-TCCCTTT
** * *
161000 GTCCTCAAAGAGTTGGACGCACTTCA-TTTCCTTCTTTTCCCTTTT
1 GTCCTCAAAGAGCAGGATGCA-TTTATTTTCC-TC--TTCCC-TTT
* * * * * *
161045 GTCCTCAAAGAGCAAGACGCACCTTATTTTCCTTTTTCTTTT
1 GTCCTCAAAGAGCAGGATGCA-TTTATTTTCCTCTTCCCTTT
* *
161087 ATCCTCAAAGAGCAGGACGCATTT
1 GTCCTCAAAGAGCAGGATGCATTT
161111 CGTTGTCCTT
Statistics
Matches: 198, Mismatches: 30, Indels: 36
0.75 0.11 0.14
Matches are distributed among these distances:
41 2 0.01
42 37 0.19
43 50 0.25
44 5 0.03
45 54 0.27
46 46 0.23
47 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.39
Consensus pattern (41 bp):
GTCCTCAAAGAGCAGGATGCATTTATTTTCCTCTTCCCTTT
Found at i:160921 original size:45 final size:45
Alignment explanation
Indices: 160823--161148 Score: 288
Period size: 43 Copynumber: 7.4 Consensus size: 45
160813 GCACCTCCTA
* * *
160823 GTCCTCAAAGAGCAGGATGCACTTT-ATTTTCC-TC--CTCCCTCTT
1 GTCCTCAAAGAGCAGGACGCA-TTTCA-TTTCCTTCTTTTCCCTTTT
160866 GTCCTCAAAGAGCAGGACGCATTTCATTTCCTTCTTTTCCCTTTT
1 GTCCTCAAAGAGCAGGACGCATTTCATTTCCTTCTTTTCCCTTTT
* * * * *
160911 GTCTTCAAAGAGTAGGATGCATTTTATTT--TCCTTTTCTCC-TTT
1 GTCCTCAAAGAGCAGGACGCATTTCATTTCCTTCTTTTC-CCTTTT
* * * *
160954 GTCCTCAAAGAGCAGGACACGTTCCATTTCCTTCTTTTGTCCTTTT
1 GTCCTCAAAGAGCAGGACGCATTTCATTTCCTTCTTTT-CCCTTTT
** *
161000 GTCCTCAAAGAGTTGGACGCACTTCATTTCCTTCTTTTCCCTTTT
1 GTCCTCAAAGAGCAGGACGCATTTCATTTCCTTCTTTTCCCTTTT
* *
161045 GTCCTCAAAGAGCAAGACGCACCTT-ATTTTCC-T-TTTT--CTTTT
1 GTCCTCAAAGAGCAGGACGCA-TTTCA-TTTCCTTCTTTTCCCTTTT
* *
161087 ATCCTCAAAGAGCAGGACGCATTTCGTTGTCCTT-TTTT-CC-TTT
1 GTCCTCAAAGAGCAGGACGCATTTCATT-TCCTTCTTTTCCCTTTT
*
161130 GTCCTCGAAA-AGCAAGACG
1 GTCCTC-AAAGAGCAGGACG
161149 TACTCTTTTT
Statistics
Matches: 234, Mismatches: 33, Indels: 32
0.78 0.11 0.11
Matches are distributed among these distances:
41 4 0.02
42 35 0.15
43 76 0.32
44 10 0.04
45 66 0.28
46 43 0.18
ACGTcount: A:0.19, C:0.27, G:0.15, T:0.39
Consensus pattern (45 bp):
GTCCTCAAAGAGCAGGACGCATTTCATTTCCTTCTTTTCCCTTTT
Found at i:160982 original size:88 final size:89
Alignment explanation
Indices: 160823--161058 Score: 298
Period size: 88 Copynumber: 2.6 Consensus size: 89
160813 GCACCTCCTA
* ** *
160823 GTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCCTC-CCTCTTGTCCTCAAAGAGCAGGACGCA
1 GTCCTCAAAGAGTAGGATGCACTTTATTTTCCTTTTCTCCT-TTGTCCTCAAAGAGCAGGACACA
*
160887 TTTCATTTCCTTCTTTT-CCCTTTT
65 TTCCATTTCCTTCTTTTGCCCTTTT
* * *
160911 GTCTTCAAAGAGTAGGATGCATTTTATTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACACGT
1 GTCCTCAAAGAGTAGGATGCACTTTATTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACACAT
*
160976 TCCATTTCCTTCTTTTGTCCTTTT
66 TCCATTTCCTTCTTTTGCCCTTTT
* * * *
161000 GTCCTCAAAGAGTTGGACGCACTTCA-TTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCA
1 GTCCTCAAAGAGTAGGATGCACTTTATTTTCCTT-TTCT-CC-TTTGTCCTCAAAGAGCA
161059 AGACGCACCT
Statistics
Matches: 128, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
88 76 0.59
89 33 0.26
90 2 0.02
91 17 0.13
ACGTcount: A:0.19, C:0.28, G:0.14, T:0.39
Consensus pattern (89 bp):
GTCCTCAAAGAGTAGGATGCACTTTATTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACACAT
TCCATTTCCTTCTTTTGCCCTTTT
Found at i:161011 original size:134 final size:133
Alignment explanation
Indices: 160864--161104 Score: 374
Period size: 134 Copynumber: 1.8 Consensus size: 133
160854 CTCCTCCCTC
* * * * *
160864 TTGTCCTCAAAGAGCAGGACGCATTTCATTTCCTTCTTTTCCCTTTTGTCTTCAAAGAGTAGGAT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAAGAC
** *
160929 GCATTTTATTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACACGTTCCATTTCCTTCTTTTGT
66 GCACCTTATTTTCCTTTT-TCCTTTATCCTCAAAGAGCAGGACACGTTCCATTTCCTTCTTTTGT
160994 CCTT
130 CCTT
**
160998 TTGTCCTCAAAGAGTTGGACGCACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAAGAC
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAAGAC
*
161063 GCACCTTATTTTCCTTTTTCTTTTATCCTCAAAGAGCAGGAC
66 GCACCTTATTTTCCTTTTTCCTTTATCCTCAAAGAGCAGGAC
161105 GCATTTCGTT
Statistics
Matches: 96, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
133 22 0.23
134 74 0.77
ACGTcount: A:0.20, C:0.26, G:0.14, T:0.40
Consensus pattern (133 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAAGAC
GCACCTTATTTTCCTTTTTCCTTTATCCTCAAAGAGCAGGACACGTTCCATTTCCTTCTTTTGTC
CTT
Found at i:161120 original size:134 final size:130
Alignment explanation
Indices: 160864--161148 Score: 358
Period size: 134 Copynumber: 2.2 Consensus size: 130
160854 CTCCTCCCTC
* * * * *
160864 TTGTCCTCAAAGAGCAGGACGCATTTCATTTCCTTCTTTTCCCTTTTGTCTTCAAAGAGTAGGAT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAAGAC
** * *
160929 GCATTTTATTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACACGTTCCATTTCCTTCTTTTGT
66 GCACCTTATTTTCCTTTTCTCCTTTATCCTCAAAGAGCAGGACACATTCCATTTCC-T-TTTT-T
160994 CCTT
128 CC-T
**
160998 TTGTCCTCAAAGAGTTGGACGCACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAAGAC
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAAGAC
* * * *
161063 GCACCTTATTTTCCTTTT-TCTTTTATCCTCAAAGAGCAGGACGCATTTCGTTGTCCTTTTTTCC
66 GCACCTTATTTTCCTTTTCTCCTTTATCCTCAAAGAGCAGGACACATTCCATT-TCCTTTTTTCC
161127 T
130 T
*
161128 TTGTCCTCGAAA-AGCAAGACG
1 TTGTCCTC-AAAGAGCAGGACG
161149 TACTCTTTTT
Statistics
Matches: 131, Mismatches: 18, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
130 15 0.11
131 6 0.05
132 4 0.03
133 29 0.22
134 77 0.59
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.40
Consensus pattern (130 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAAGAC
GCACCTTATTTTCCTTTTCTCCTTTATCCTCAAAGAGCAGGACACATTCCATTTCCTTTTTTCCT
Found at i:161327 original size:64 final size:63
Alignment explanation
Indices: 161239--161803 Score: 718
Period size: 64 Copynumber: 9.0 Consensus size: 63
161229 TTCTCCTTCC
* * *
161239 AAGCCCACACGAGTTGGTGGCACCTTCTAGTCCTCAAAGAGGAGGACGCCTTTTTTTCCTTTTA
1 AAGCCCACACAAGTTGGTGGCACCTT-TAGTCCTCAAAGAGCAGGATGCCTTTTTTTCCTTTTA
* *
161303 AAGCCCCCACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCC---TTTTCCTTTCA
1 AAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTTTCCTTTTA
* * ** * * *
161363 AAGCCCACACGAGTTGGTGGTACCCTCCAGTGCTCAAAGAGCAGGACGCC-TTTTTTCTTTTTA
1 AAGCCCACACAAGTTGGTGGCA-CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTTTCCTTTTA
*
161426 AAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTTTTTTCTTTTT
1 AAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCC---TTTTTTTCCTTTT
161491 A
63 A
** * *
161492 AAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCATTACGCC---TTTTCCTTTCA
1 AAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTTTCCTTTTA
* * * *
161552 AAGCCCACACGAGTTGGTGGCACCCTCTAGTTCTCAAAGAGCAGGATGCCTTTTTTTTCTTTTTA
1 AAGCCCACACAAGTTGGTGGCA-CCTTTAGTCCTCAAAGAGCAGGATGCC-TTTTTTTCCTTTTA
* * * *
161617 AAGTCCACACAAGTTGGTGGCACCTTTAGTCCTCAAACAGCAAGATGCCTTTTTTTTCTTTTTA
1 AAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCC-TTTTTTTCCTTTTA
*
161681 AAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCC---TTTTCCTTTCA
1 AAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTTTCCTTTTA
* * *
161741 AAGCCCACACGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCCTTTTTTTTCTTTT
1 AAGCCCACACAAGTTGGTGGCA-CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTTTCCTTTT
161804 TAGTCCTCAA
Statistics
Matches: 437, Mismatches: 48, Indels: 32
0.85 0.09 0.06
Matches are distributed among these distances:
60 89 0.20
61 71 0.16
62 23 0.05
63 50 0.11
64 116 0.27
65 29 0.07
66 59 0.14
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (63 bp):
AAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTTTCCTTTTA
Found at i:161557 original size:189 final size:188
Alignment explanation
Indices: 161239--161805 Score: 931
Period size: 189 Copynumber: 3.0 Consensus size: 188
161229 TTCTCCTTCC
* * * *
161239 AAGCCCACACGAGTTGGTGGCACCTTCTAGTCCTCAAAGAGGAGGACGCC-TTTTTTTCCTTTTA
1 AAGCCCACACAAGTTGGTGGCACCTT-TAGTCCTCAAAGAGCAGGATGCCTTTTTTTTCTTTTTA
*
161303 AAGCCCCCACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCC
65 AAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCC
* * * *
161368 CACACGAGTTGGTGGTACCCTCCAGTGCTCAAAGAGCAGGACGCC-TTTTTTCTTTTTA
130 CACACGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCCTTTTTTTCTTTTTA
161426 AAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTTTTTTCTTTTT
1 AAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCC--TTTTTTTTCTTTTT
** *
161491 AAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCATTACGCCTTTTCCTTTCAAAGC
64 AAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGC
*
161556 CCACACGAGTTGGTGGCACCCTCTAGTTCTCAAAGAGCAGGATGCCTTTTTTTTCTTTTTA
129 CCACACGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCC-TTTTTTTCTTTTTA
* * *
161617 AAGTCCACACAAGTTGGTGGCACCTTTAGTCCTCAAACAGCAAGATGCCTTTTTTTTCTTTTTAA
1 AAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTTTTCTTTTTAA
161682 AGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCC
66 AGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCC
161747 ACACGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCCTTTTTTTTCTTTTTA
131 ACACGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCC-TTTTTTTCTTTTTA
161806 GTCCTCAAAG
Statistics
Matches: 356, Mismatches: 19, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
186 21 0.06
187 25 0.07
189 251 0.71
191 59 0.17
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.31
Consensus pattern (188 bp):
AAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTTTTCTTTTTAA
AGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCC
ACACGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCCTTTTTTTCTTTTTA
Found at i:161893 original size:97 final size:96
Alignment explanation
Indices: 161705--161900 Score: 340
Period size: 96 Copynumber: 2.0 Consensus size: 96
161695 TGGTGGCACC
* *
161705 TTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCTA
1 TTTAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCA
161770 GTCCTCAAAGAGCAGGATGCCTTTTTTTTCTT
66 GTCCTCAAAGAGCAGGATGCC-TTTTTTTCTT
* *
161802 TTTAGTCCTCAAAGAGTAGGATGCCTTCTCC-TTCCAAGCCCACACGAGTTGGTGGCACCCTCCA
1 TTTAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCA
161866 GTCCTCAAAGAGCAGGATGCCTTTTTTTCTT
66 GTCCTCAAAGAGCAGGATGCCTTTTTTTCTT
161897 TTTA
1 TTTA
161901 AAGCCCACAC
Statistics
Matches: 95, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
95 14 0.15
96 52 0.55
97 29 0.31
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.32
Consensus pattern (96 bp):
TTTAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCA
GTCCTCAAAGAGCAGGATGCCTTTTTTTCTT
Found at i:161951 original size:409 final size:408
Alignment explanation
Indices: 161426--162620 Score: 1841
Period size: 409 Copynumber: 2.9 Consensus size: 408
161416 TTTCTTTTTA
* *
161426 AAGCCCACACAAGTTGGTGGCA-CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTTTTTTCTTTT
1 AAGCCCACACGAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCC---TTTTTTTCTTTT
**
161490 TAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCATTACGCCTTTTCCTTTCAAAG
63 TAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAG
* *
161555 CCCACACGAGTTGGTGGCACCCTCTAGTTCTCAAAGAGCAGGATGCCTTTTTTTTCTTTTTAAAG
128 CCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGATGCC-TTTTTTTCTTTTTAAAG
* * *
161620 TCCACACAAGTTGGTGGCACCTTTAGTCCTCAAACAGCAAGATGCCTTTTTTTTCTTTTTAAAGC
192 CCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTTTTCTTTTTAAAGC
*
161685 CCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACA
257 CCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACA
*
161750 CGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCC-TTTTTTTTCTTTTTAGTCCTCAA
322 CGAGTTGGTGGCACCCT-TAGTCCTTAAAGAGCAGGATGCCTTTTTTTTTCTTTTTAGTCCTCAA
161814 AGAGTAGGATGCCTTCTCCTTCC
386 AGAGTAGGATGCCTTCTCCTTCC
*
161837 AAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGATGCCTTTTTTTCTTTTTAA
1 AAGCCCACACGAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTTTTTCTTTTTAA
*
161902 AGCCCACACAAGTTGGTAGCACCTTTAGTCCTCAAAGAGCAGGACGCC-TTTCCTTTTCAAAGCC
66 AGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCC-TTTCAAAGCC
* * *
161966 CACACGAGTTGATGGCACCCTCCAGTCCTTAAAGAGCAGGACGCC-TTTTTTCTTTTTAAAGCCC
130 CACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGATGCCTTTTTTTCTTTTTAAAGCCC
* * *
162030 ATACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTCTTTTTGAAGCCCA
195 ACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTTTTCTTTTTAAAGCCCA
** *
162095 CACAAGTTGGTGGCACCTTTAGTAATCAAAGGGCAGGACGCCTTTTCCTTTCAAAGCCCACACGA
260 CACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACGA
* ** *
162160 GTTGGTGGCGCCCTTCAGTCCTTAAAGAGCAGGACACCTTTTTTTTTTTTTTTTAGTCCTCAAAG
325 GTTGGTGGCACCCTT-AGTCCTTAAAGAGCAGGATGCC-TTTTTTTTTCTTTTTAGTCCTCAAAG
162225 AGTAGGATGCCTTCTCCTTCC
388 AGTAGGATGCCTTCTCCTTCC
*
162246 AAGCCCACACGAGTTGGTGGCACCGTTCAGTCCTCAAAGAGCAGGATGCCTTTTTTTCTTTTTAA
1 AAGCCCACACGAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTTTTTCTTTTTAA
* *
162311 AGCCCATACAAGTTGGTGGCACCTTTAGTCCTCAAAG-GCAGGATGCCTTTTCCTTTCAAAGCCC
66 AGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCC
** *
162375 ACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGTTGGATGCCTTTTTTTCTTTTTAAAGGCCA
131 ACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGATGCCTTTTTTTCTTTTTAAAGCCCA
* * *
162440 CACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCGGGATGCC----TTTTCCTTTCAAAGCCCAC
196 CACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTTTTCTTTTTAAAGCCCAC
* * * *
162501 ACGAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACACCATTTTTCTTTTTAAAGCCCACAC
261 ACAAGTTGGTGGCACCTT-TAGTCCTCAAAGAGCAGGACGCC--TTTTCCTTTCAAAGCCCACAC
* * * *
162566 AAGTTGGTGGCACCTTTAGTCCTTAAAAAGCAAGATGCCTTTTTTTTTCTTTTTA
323 GAGTTGGTGGCACCCTTAGTCCTTAAAGAGCAGGATGCCTTTTTTTTTCTTTTTA
162621 AAGCCCACAC
Statistics
Matches: 716, Mismatches: 58, Indels: 25
0.90 0.07 0.03
Matches are distributed among these distances:
405 33 0.05
406 35 0.05
407 189 0.26
408 97 0.14
409 316 0.44
411 21 0.03
412 25 0.03
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.31
Consensus pattern (408 bp):
AAGCCCACACGAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTTTTTCTTTTTAA
AGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCC
ACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGATGCCTTTTTTTCTTTTTAAAGCCCA
CACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTTTTCTTTTTAAAGCCCAC
ACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACGAG
TTGGTGGCACCCTTAGTCCTTAAAGAGCAGGATGCCTTTTTTTTTCTTTTTAGTCCTCAAAGAGT
AGGATGCCTTCTCCTTCC
Found at i:161971 original size:220 final size:218
Alignment explanation
Indices: 161621--162023 Score: 657
Period size: 220 Copynumber: 1.8 Consensus size: 218
161611 TTTTTAAAGT
**
161621 CCACACAAGTTGGTGGCACCTTTAGTCCTCAAACAGCAAGATGCCTTTTTTTTCTTTTTAAAGCC
1 CCACACAAGTTGGTGGCACCTCCAGTCCTCAAACAGCAAGATGCCTTTTTTTTCTTTTTAAAGCC
* *
161686 CACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACAC
66 CACACAAGTTGGTAGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACAC
* * *
161751 GAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCCTTTTTTTTCTTTTTAGTCCTCAAAG
131 GAGTTGATGGCACCCTCCAGTCCTCAAAGAGCAGGACGCC--TTTTTTCTTTTTAGTCCTCAAAG
161816 AGTAGGATGCCTTCTCCTTCCAAGC
194 AGTAGGATGCCTTCTCCTTCCAAGC
* * *
161841 CCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGATGCC-TTTTTTTCTTTTTAAAGC
1 CCACACAAGTTGGTGGCA-CCTCCAGTCCTCAAACAGCAAGATGCCTTTTTTTTCTTTTTAAAGC
161905 CCACACAAGTTGGTAGCACCTTTAGTCCTCAAAGAGCAGGACGCC-TTTCCTTTTCAAAGCCCAC
65 CCACACAAGTTGGTAGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCC-TTTCAAAGCCCAC
*
161969 ACGAGTTGATGGCACCCTCCAGTCCTTAAAGAGCAGGACGCCTTTTTTCTTTTTA
129 ACGAGTTGATGGCACCCTCCAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTTA
162024 AAGCCCATAC
Statistics
Matches: 170, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
218 13 0.08
219 5 0.03
220 129 0.76
221 23 0.14
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (218 bp):
CCACACAAGTTGGTGGCACCTCCAGTCCTCAAACAGCAAGATGCCTTTTTTTTCTTTTTAAAGCC
CACACAAGTTGGTAGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACAC
GAGTTGATGGCACCCTCCAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTTAGTCCTCAAAGAG
TAGGATGCCTTCTCCTTCCAAGC
Found at i:162040 original size:123 final size:123
Alignment explanation
Indices: 161802--162200 Score: 484
Period size: 123 Copynumber: 3.2 Consensus size: 123
161792 TTTTTTTCTT
* * *
161802 TTTAGTCCTCAAAGAGTAGGATGCCTTCTCC--TTCCAAGCCCACACGAGTTGGTGGCACCCTCC
1 TTTAGTCCTCAAAGAGCAGGACGCCTT-TCCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTCC
* *
161865 AGTCCTCAAAGAGCAGGATGCCTTTTTTTCTTTTTAAAGCCCACACAAGTTGGTAGCACC
65 AGTCCTCAAAGAGCAGGACGCC-TTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACC
*
161925 TTTAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTCAAAGCCCACACGAGTTGATGGCACCCTCCA
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCA
* *
161990 GTCCTTAAAGAGCAGGACGCCTTTTTTCTTTTTAAAGCCCATACAAGTTGGTGGCACC
66 GTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACC
* ** *
162048 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTCTTTTTGAAGCCCACACAAGTTGGTGGCA-CC
1 TTTAGTCCTCAAAGAGCAGGACGCC----TTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
** ** * * * * *
162112 TTTAGTAATCAAAGGGCAGGACGCC--TTTTCCTTTCAAAGCCCACACGAGTTGGTGGCGCCC
62 TCCAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGC-ACC
* * *
162173 TTCAGTCCTTAAAGAGCAGGACACCTTT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTT
162201 TTTTTTTTTT
Statistics
Matches: 242, Mismatches: 27, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
121 3 0.01
122 3 0.01
123 85 0.35
124 78 0.32
125 24 0.10
126 21 0.09
127 28 0.12
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (123 bp):
TTTAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCA
GTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACC
Found at i:162056 original size:532 final size:519
Alignment explanation
Indices: 161295--163243 Score: 1629
Period size: 532 Copynumber: 3.7 Consensus size: 519
161285 CGCCTTTTTT
* * * **
161295 TCCTTTTAAAGCCCCCACAAGTTGGTGGCA-CCTTTAGTCCTCAAAGAGCAGGATGCC---TTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGATGCCTTTTTTT
* * * * ** * *
161356 CCTTTCAAAGCCCACACGAGTTGGTGGTACCCTCCAGTGCTCAAAGAGCAGGACGCCTTTTTTCT
66 CTTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTTAGTCCTCAAAGAGCAGGACGCC-TTTTCCT
* * * *
161421 TTTTAAAGCCCACACAAGTTGGTGGCA-CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTTTTTT
129 TTTCAAAGCCCACACGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGACGCC----TTTTTT
** *
161485 CTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCATTACGCC-TTTTCCTT
190 CTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCTTT
* * * * * *
161549 TCAAAGCCCACACGAGTTGGTGGCACCCTCTAGTTCTCAAAGAGCAGGATGCCTTTTTTTTCTTT
255 TTAAAGCCCACACAAGTTGGTGGCA-CCTTTAGTACTCAAAGGGCAGGATGCC----TTTTCCTT
* * * * * * *
161614 TTAAAGTCCACACAAGTTGGTGGCACCTTTAGTCCTCAAACAGCAAGATGCCTTTTTTTTCTTTT
315 TCAAAGCCCACACGAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTTTTTTTCTTTT
*
161679 TAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAG
380 TAAAG----C-C---TT--T------TTTAGTCCTCAAAGAGCAGGATGCCTTCTCC-TTCAAAG
161744 CCCACACGAGTTGGTGGCACCC-TCTAGTCCTCAAAGAGCAGGATGCC-TT-TTTTT-T-C-T-T
428 CCCACACGAGTTGGTGGCACCCTTC-AGTCCTCAAAGAGCAGGATGCCTTTCTTTTTATACATGT
*
161802 -TTTAGTCCTCAAAGAGTAGGATGCCTTC
492 CTTTAGTCCTCAAAG-GCAGGATGCCTTC
*
161830 TCC-TTCCAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGATGCCTTTTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGATGCCTTTTTTT
*
161894 CTTTTTAAAGCCCACACAAGTTGGTAGCACCTTTAGTCCTCAAAGAGCAGGACGCC-TTTCCTTT
66 CTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTT
* * *
161958 TCAAAGCCCACACGAGTTGATGGCACCCTCCAGTCCTTAAAGAGCAGGACGCCTTTTTTCTTTTT
131 TCAAAGCCCACACGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTT
* * *
162023 AAAGCCCATACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTCTTTTTG
196 AAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAAGACGCC---TTTTTCTTTTTA
* *
162088 AAGCCCACACAAGTTGGTGGCACCTTTAGTAATCAAAGGGCAGGACGCCTTTTCCTTTCAAAGCC
258 AAGCCCACACAAGTTGGTGGCACCTTTAGTACTCAAAGGGCAGGATGCCTTTTCCTTTCAAAGCC
* * *
162153 CACACGAGTTGGTGGCGCCCTTCAGTCCTTAAAGAGCAGGACACC---TTTTT-TTTTT------
323 CACACGAGTTGGTGGC-ACCTTCAGTCCTCAAAGAGCAGGACGCCTTTTTTTTCTTTTTAAAGCC
* * *
162208 TTTTTTAGTCCTCAAAGAGTAGGATGCCTTCTCCTTCCAAGCCCACACGAGTTGGTGGCACCGTT
387 TTTTTTAGTCCTCAAAGAGCAGGATGCCTTCTCCTTCAAAGCCCACACGAGTTGGTGGCACCCTT
162273 CAGTCCTCAAAGAGCAGGATGCCTTTTTTTCTTTTTAAAGCCCATACAAGTTGGTGGCACCTTTA
452 CAGTCCTCAAAGAGCAGGATGCC----TTTCTTTTT-------ATAC-A--T-GT-----CTTTA
*
162338 GTCCTCAAAGGCAGGATGCCTTT
497 GTCCTCAAAGGCAGGATGCCTTC
**
162361 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGTTGGATGCCTTTTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGATGCCTTTTTTT
* * *
162426 CTTTTTAAAGGCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCGGGATGCCTTTTCC-TT
66 CTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTT
* * *
162490 TCAAAGCCCACACGAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACACCATTTTTCTTTTT
131 TCAAAGCCCACACGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTT
* * *
162555 AAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTTAAAAAGCAAGATGCCTTTTTTTTTCTTTTT
196 AAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAAGACGCC----TTTTTCTTTTT
* * *
162620 AAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAGGGGCAGTATGCCTTTTCCTTTCAAAGC
257 AAAGCCCACACAAGTTGGTGGCACCTTTAGTACTCAAAGGGCAGGATGCCTTTTCCTTTCAAAGC
*
162685 CCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGCCTTTTTTTTCTTTTTAAAGC
322 CCACACGAGTTGGTGGCA-CCTTCAGTCCTCAAAGAGCAGGACGCCTTTTTTTTCTTTTTAAAGC
* * * * *
162750 C-----TA-----CAAAGAGCAGGACGCCTTTTCTTTTTAAACCCCACACGAGTTGGTGGCACCC
386 CTTTTTTAGTCCTCAAAGAGCAGGATGCCTTCTC-CTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * **
162805 -TCTAGTCCTCAAAGAGCAGGA---C-GTCTTTTT-T-C-T-T-TTTAAAGCCCACACAA-GTTG
450 TTC-AGTCCTCAAAGAGCAGGATGCCTTTCTTTTTATACATGTCTTT--AGTCCTCA-AAGGCAG
* **
162859 G-TGGCACC
511 GATGCCTTC
** * * ** * *
162867 TCCTAGTCCTCAAAGAGCAGGACGAACTTTAT-TC-CCCGT--TGTCCTCAAAGAGCAGGACACA
1 TCCT--T--TCAAAGCCCA-CACG-AGTTGGTGGCACCC-TCCAGTCCTCAAAGAGCAGG-----
* * * * **
162928 CTTCAATTCCTTCTTTTCCCTTTTAAAGCTCACACAAGTTGGTGGCATTTTTCTAGTCCTCAAAG
54 -----ATGCCTT-TTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA-CCTT-TAGTCCTCAAAG
** ***
162993 AGCAGGACGCCTTTTCC-TTTCAAAGCCCACATAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGC
111 AGCAGGACGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGC
* * * ** * *
163057 AGGACG--TCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGTAG
176 AGGACGCCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-AGTCCTCAAAGAGCAA
* * ** * * *
163120 GATG-CTTTCTCTTTGCAGAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGAT
240 GACGCCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTT-TAGTACTCAAAGGGCAGGAT
* * * * * *
163184 GCC-TTTCCTTTTCAAAGCCCATAAGAGTTGGTGACACTTTTTAGTCCTCAAAGAGTAGGA
304 GCCTTTTCC-TTTCAAAGCCCACACGAGTTGGTGGCAC-CTTCAGTCCTCAAAGAGCAGGA
163244 AGCAGTTTAT
Statistics
Matches: 1189, Mismatches: 144, Indels: 180
0.79 0.10 0.12
Matches are distributed among these distances:
505 52 0.04
506 38 0.03
507 9 0.01
508 3 0.00
509 14 0.01
510 13 0.01
511 11 0.01
512 5 0.00
513 1 0.00
514 2 0.00
516 40 0.03
517 63 0.05
518 1 0.00
519 7 0.01
520 66 0.06
521 18 0.02
522 75 0.06
524 1 0.00
526 8 0.01
528 5 0.00
529 5 0.00
531 43 0.04
532 310 0.26
533 139 0.12
534 65 0.05
535 79 0.07
536 57 0.05
537 29 0.02
538 30 0.03
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (519 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGATGCCTTTTTTT
CTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTT
TCAAAGCCCACACGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTT
AAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCTTTTTAAAG
CCCACACAAGTTGGTGGCACCTTTAGTACTCAAAGGGCAGGATGCCTTTTCCTTTCAAAGCCCAC
ACGAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTTTTTTTCTTTTTAAAGCCTTTT
TTAGTCCTCAAAGAGCAGGATGCCTTCTCCTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGT
CCTCAAAGAGCAGGATGCCTTTCTTTTTATACATGTCTTTAGTCCTCAAAGGCAGGATGCCTTC
Found at i:162103 original size:64 final size:62
Alignment explanation
Indices: 161837--162209 Score: 439
Period size: 64 Copynumber: 6.0 Consensus size: 62
161827 TTCTCCTTCC
* * *
161837 AAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGATGCCTTTTTTTCTTTTTA
1 AAGCCCACACAAGTTGGTGGCA-CCTTCAGTCCTCAAAGAGCAGGACGCC-TTTTTTCTTTTTA
* * * *
161901 AAGCCCACACAAGTTGGTAGCACCTTTAGTCCTCAAAGAGCAGGACGCC--TTTCCTTTTCA
1 AAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTTA
* * * *
161961 AAGCCCACACGAGTTGATGGCACCCTCCAGTCCTTAAAGAGCAGGACGCCTTTTTTCTTTTTA
1 AAGCCCACACAAGTTGGTGGCA-CCTTCAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTTA
* * *
162024 AAGCCCATACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTCTTTTTG
1 AAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCC--TTTTTTCTTTTTA
* ** * * *
162088 AAGCCCACACAAGTTGGTGGCACCTTTAGTAATCAAAGGGCAGGACGCC--TTTTCCTTTCA
1 AAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTTA
* * * * *
162148 AAGCCCACACGAGTTGGTGGCGCCCTTCAGTCCTTAAAGAGCAGGACACCTTTTTTTTTTTT
1 AAGCCCACACAAGTTGGTGGC-ACCTTCAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTT
162210 TTTTAGTCCT
Statistics
Matches: 261, Mismatches: 40, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
60 56 0.21
61 45 0.17
62 24 0.09
63 59 0.23
64 77 0.30
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (62 bp):
AAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTTA
Found at i:162152 original size:187 final size:187
Alignment explanation
Indices: 161837--162209 Score: 579
Period size: 187 Copynumber: 2.0 Consensus size: 187
161827 TTCTCCTTCC
* *
161837 AAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGATGCCTTTTTTTCTTTTTAA
1 AAGCCCACACAAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGCCTTTTTTTCTTTTTAA
**
161902 AGCCCACACAAGTTGGTAGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTCAAAGCCC
66 AGCCCACACAAGTTGGTAGCACCTTTAGTAATCAAAGAGCAGGACGCCTTTCCTTTTCAAAGCCC
*
161967 ACACGAGTTGATGGCACCCTCCAGTCCTTAAAGAGCAGGACGCCTTTTTTCTTTTTA
131 ACACGAGTTGATGGCACCCTCCAGTCCTTAAAGAGCAGGACACCTTTTTTCTTTTTA
* ** *
162024 AAGCCCATACAAGTTGGTGGCA-CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTCTTTTTG
1 AAGCCCACACAAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGCC-TTTTTTTCTTTTTA
* *
162088 AAGCCCACACAAGTTGGTGGCACCTTTAGTAATCAAAGGGCAGGACGCCTTTTCC-TTTCAAAGC
65 AAGCCCACACAAGTTGGTAGCACCTTTAGTAATCAAAGAGCAGGACGCC-TTTCCTTTTCAAAGC
* * * *
162152 CCACACGAGTTGGTGGCGCCCTTCAGTCCTTAAAGAGCAGGACACCTTTTTTTTTTTT
129 CCACACGAGTTGATGGCACCCTCCAGTCCTTAAAGAGCAGGACACCTTTTTTCTTTTT
162210 TTTTAGTCCT
Statistics
Matches: 169, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
186 24 0.14
187 140 0.83
188 5 0.03
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (187 bp):
AAGCCCACACAAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGCCTTTTTTTCTTTTTAA
AGCCCACACAAGTTGGTAGCACCTTTAGTAATCAAAGAGCAGGACGCCTTTCCTTTTCAAAGCCC
ACACGAGTTGATGGCACCCTCCAGTCCTTAAAGAGCAGGACACCTTTTTTCTTTTTA
Found at i:162202 original size:124 final size:125
Alignment explanation
Indices: 161837--162210 Score: 470
Period size: 124 Copynumber: 3.0 Consensus size: 125
161827 TTCTCCTTCC
*
161837 AAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGATGCCTTTTTTTCTTTTTAA
1 AAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGCC--TTTTTCTTTTTAA
* * *
161902 AGCCCACACAAGTTGGTAGCACCTTTAGTCCTCAAAGAGCAGGACGCC---TTTCCTTTTCA
64 AGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTCTTTTTA
* *
161961 AAGCCCACACGAGTTGATGGCACCCTCCAGTCCTTAAAGAGCAGGACGCCTTTTTTCTTTTTAAA
1 AAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGCC-TTTTTCTTTTTAAA
* *
162026 GCCCATACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTCTTTTTG
65 GCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCC-TTTTTTTCTTTTTA
* ** ** * * *
162088 AAGCCCACACAAGTTGGTGGCA-CCTTTAGTAATCAAAGGGCAGGACGCC-TTTTCCTTTCAAAG
1 AAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTTAAAG
* * * * * *
162151 CCCACACGAGTTGGTGGCGCCCTTCAGTCCTTAAAGAGCAGGACACCTTTTTTTTTTTTT
66 CCCACACAAGTTGGTGGC-ACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTCTTTTT
162211 TTTAGTCCTC
Statistics
Matches: 220, Mismatches: 25, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
123 60 0.27
124 87 0.40
125 24 0.11
126 21 0.10
127 28 0.13
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (125 bp):
AAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTTAAAG
CCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTCTTTTTA
Found at i:162282 original size:60 final size:60
Alignment explanation
Indices: 162214--162734 Score: 512
Period size: 60 Copynumber: 8.4 Consensus size: 60
162204 TTTTTTTTTT
* * * *
162214 AGTCCTCAAAGAGTAGGATGCCTTCTC-CTTCCAAGCCCACACGAGTTGGTGGCACCGTTC
1 AGTCCTCAAAGAGCAGGATGCCTTTTCTCTTCAAAGCCCACACAAGTTGGTGGCACC-TTC
* * * *
162274 AGTCCTCAAAGAGCAGGATGCCTTTTTTTCTTTTTAAAGCCCATACAAGTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGATGCC---TTTTCTCTTCAAAGCCCACACAAGTTGGTGGCACCTTC
* *
162337 AGTCCTCAAAG-GCAGGATGCCTTTTC-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTCC
1 AGTCCTCAAAGAGCAGGATGCCTTTTCTC-TTCAAAGCCCACACAAGTTGGTGGCA-CCTTC
** * * * *
162397 AGTCCTCAAAGAGTTGGATGCCTTTTTTTCTTTTTAAAGGCCACACAAGTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGATGCC---TTTTCTCTTCAAAGCCCACACAAGTTGGTGGCACCTTC
* *
162460 AGTCCTCAAAGAGCGGGATGCCTTTTC-CTTTCAAAGCCCACACGAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGATGCCTTTTCTC-TTCAAAGCCCACACAAGTTGGTGGCACCTTC
** * * *
162520 TAGTCCTCAAAGAGCAGGACACCATTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
1 -AGTCCTCAAAGAGCAGGATGCC--TTTTCTCTTCAAAGCCCACACAAGTTGGTGGCACCTTC
* * * * * *
162583 AGTCCTTAAAAAGCAAGATGCCTTTTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGATGCC-----TTTTCTCTTCAAAGCCCACACAAGTTGGTGGCACCTTC
* * * * *
162648 AGTCCTCAAGGGGCAGTATGCCTTTTC-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTCC
1 AGTCCTCAAAGAGCAGGATGCCTTTTCTC-TTCAAAGCCCACACAAGTTGGTGGCA-CCTTC
*
162709 AGTCCTCAAAGAGCAGGACGCCTTTT
1 AGTCCTCAAAGAGCAGGATGCCTTTT
162735 TTTTCTTTTT
Statistics
Matches: 383, Mismatches: 57, Indels: 41
0.80 0.12 0.09
Matches are distributed among these distances:
59 28 0.07
60 96 0.25
61 52 0.14
62 27 0.07
63 73 0.19
64 52 0.14
65 55 0.14
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (60 bp):
AGTCCTCAAAGAGCAGGATGCCTTTTCTCTTCAAAGCCCACACAAGTTGGTGGCACCTTC
Found at i:162285 original size:98 final size:99
Alignment explanation
Indices: 162120--162308 Score: 272
Period size: 98 Copynumber: 1.9 Consensus size: 99
162110 CCTTTAGTAA
* * * *
162120 TCAAAGGGCAGGACGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCGCCCTTCAGTCCTTAA
1 TCAAAGAGCAGGACGCCTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCCTCAA
*
162185 AGAGCAGGACACCTTTTTTTTTTTTTTTTAGTCC
66 AGAGCAGGACACCTTTTTTTCTTTTTTTTAGTCC
* * * *
162219 TCAAAGAGTAGGATGCCTTCTCC-TTCCAAGCCCACACGAGTTGGTGGCACCGTTCAGTCCTCAA
1 TCAAAGAGCAGGACGCCTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCCTCAA
**
162283 AGAGCAGGATGCCTTTTTTTCTTTTT
66 AGAGCAGGACACCTTTTTTTCTTTTT
162309 AAAGCCCATA
Statistics
Matches: 79, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
98 60 0.76
99 19 0.24
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (99 bp):
TCAAAGAGCAGGACGCCTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCCTCAA
AGAGCAGGACACCTTTTTTTCTTTTTTTTAGTCC
Found at i:162430 original size:123 final size:123
Alignment explanation
Indices: 162211--162734 Score: 653
Period size: 123 Copynumber: 4.2 Consensus size: 123
162201 TTTTTTTTTT
* * * * *
162211 TTTAGTCCTCAAAGAGTAGGATGCCTTCTCC-TTCCAAGCCCACACGAGTTGGTGGCACCGTTCA
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCA
*
162275 GTCCTCAAAGAGCAGGATGCCTTTTTTTCTTTTTAAAGCCCATACAAGTTGGTGGCACC
66 GTCCTCAAAGAGCAGGATGCC-TTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACC
162334 TTTAGTCCTCAAAG-GCAGGATGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCA
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCA
** *
162398 GTCCTCAAAGAGTTGGATGCCTTTTTTTCTTTTTAAAGGCCACACAAGTTGGTGGCACC
66 GTCCTCAAAGAGCAGGATGCC-TTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACC
* * *
162457 TTTAGTCCTCAAAGAGCGGGATGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTCTA
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCA
** *
162522 GTCCTCAAAGAGCAGGACACCATTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACC
66 GTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACC
* * * * * *
162580 TTTAGTCCTTAAAAAGCAAGATGCCTTTTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA-C
1 TTTAGTCCTCAAAGAGCAGGATGCC-----TTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
** * * * * * *
162644 CTTTAGTCCTCAAGGGGCAGTATGCC--TTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC
61 CTCCAGTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA-CC
** *
162706 TCCAGTCCTCAAAGAGCAGGACGCCTTTT
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTT
162735 TTTTCTTTTT
Statistics
Matches: 352, Mismatches: 41, Indels: 18
0.86 0.10 0.04
Matches are distributed among these distances:
121 4 0.01
122 14 0.04
123 169 0.48
124 64 0.18
125 30 0.09
126 21 0.06
127 20 0.06
128 30 0.09
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (123 bp):
TTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCA
GTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACC
Found at i:162645 original size:188 final size:186
Alignment explanation
Indices: 162246--162750 Score: 667
Period size: 188 Copynumber: 2.7 Consensus size: 186
162236 TTCTCCTTCC
* * * *
162246 AAGCCCACACGAGTTGGTGGCACCGTTCAGTCCTCAAAGAGCAGGATGCCTTTTTTTCTTTTTAA
1 AAGCCCACACAAGTTGGTGGCACC-TTTAGTCCTCAAAGAGCAGGATGCC---TTTTCCTTTCAA
* * * * *
162311 AGCCCATACAAGTTGGTGGCACCTT-TAGTCCTCAAAG-GCAGGATGCC-TTTTCCTTTCAAAGC
62 AGCCCACACGAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTTAAAGC
* * ***
162373 CCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGTTGGATGCCTTTTTTTCTTTTTA
127 CCACACAAGTTGGTGGCACCCTCCAGTCCTCAAAAAGCAAGATGCCTTTTTTTCTTTTTA
* *
162433 AAGGCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCGGGATGCCTTTTCCTTTCAAAGCC
1 AAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCC
*
162498 CACACGAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACACCATTTTTCTTTTTAAAGCCCA
66 CACACGAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCC-TTTTTCTTTTTAAAGCCCA
** *
162563 CACAAGTTGGTGGCA-CCTTTAGTCCTTAAAAAGCAAGATGCCTTTTTTTTTCTTTTTA
130 CACAAGTTGGTGGCACCCTCCAGTCCTCAAAAAGCAAGATGCC--TTTTTTTCTTTTTA
* * *
162621 AAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAGGGGCAGTATGCCTTTTCCTTTCAAAGCC
1 AAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCC
* *
162686 CACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGCCTTTTTTTTCTTTTTAAAGCC
66 CACACGAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCC---TTTTTCTTTTTAAAGCC
162751 TACAAAGAGC
Statistics
Matches: 281, Mismatches: 29, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
183 33 0.12
184 12 0.04
185 8 0.03
186 43 0.15
187 52 0.19
188 116 0.41
190 17 0.06
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (186 bp):
AAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCC
CACACGAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTTAAAGCCCAC
ACAAGTTGGTGGCACCCTCCAGTCCTCAAAAAGCAAGATGCCTTTTTTTCTTTTTA
Found at i:162851 original size:63 final size:61
Alignment explanation
Indices: 162753--162890 Score: 215
Period size: 63 Copynumber: 2.2 Consensus size: 61
162743 TTAAAGCCTA
*
162753 CAAAGAGCAGGACGCCTTTTCTTTTTAAACCCCACACGAGTTGGTGGCACC-CTCTAGTCCT
1 CAAAGAGCAGGACGCCTTTTCTTTTTAAACCCCACACAAGTTGGTGGCACCTC-CTAGTCCT
* *
162814 CAAAGAGCAGGACGTCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTCCTAGTCCT
1 CAAAGAGCAGGACG-C-CTTTTCTTTTTAAACCCCACACAAGTTGGTGGCACCTCCTAGTCCT
162877 CAAAGAGCAGGACG
1 CAAAGAGCAGGACG
162891 AACTTTATTC
Statistics
Matches: 71, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
61 14 0.20
62 1 0.01
63 55 0.77
64 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (61 bp):
CAAAGAGCAGGACGCCTTTTCTTTTTAAACCCCACACAAGTTGGTGGCACCTCCTAGTCCT
Found at i:163062 original size:61 final size:61
Alignment explanation
Indices: 162940--163243 Score: 377
Period size: 61 Copynumber: 5.0 Consensus size: 61
162930 TCAATTCCTT
* *
162940 CTTTTCCCTTTTAAAGCTCACACAAGTTGGTGGCATTTTTCTAGTCCTCAAAGAGCAGGACGC
1 CTTTT-CCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCTAGTCCTCAAAGAGCAGGACGC
* *
163003 CTTTTCCTTTCAAAGCCCACATAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGACGT
1 CTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGACGC
* *
163064 CTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-TCAGTCCTCAAAGAGTAGGATG-
1 CTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCT-AGTCCTCAAAGAGCAGGACGC
* ** *
163124 C-TTTCTCTTTGCAGAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGATGC
1 CTTTTC-CTTT-CAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGACGC
* * *
163186 C-TTTCCTTTTCAAAGCCCATA-AGAGTTGGTGACACTTTT-TAGTCCTCAAAGAGTAGGA
1 CTTTTCC-TTTCAAAGCCCACACA-AGTTGGTGGCA-TTTTCTAGTCCTCAAAGAGCAGGA
163244 AGCAGTTTAT
Statistics
Matches: 216, Mismatches: 17, Indels: 18
0.86 0.07 0.07
Matches are distributed among these distances:
59 4 0.02
60 7 0.03
61 163 0.75
62 37 0.17
63 5 0.02
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (61 bp):
CTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGACGC
Found at i:163319 original size:45 final size:43
Alignment explanation
Indices: 163259--163374 Score: 144
Period size: 45 Copynumber: 2.7 Consensus size: 43
163249 TTTATTTTCT
*
163259 TCTTTCCTTTGTCCTCAAAGAGCAGGACACACTTCATTCCCTT-C
1 TCTTTCTTTTGTCCTCAAAGAGCAGGACACACTTCATT--CTTGC
* * * * *
163303 TTTTCTCTTTTGTCCTCAAAGAGCATGACGCACTTTATTTTTGC
1 TCTT-TCTTTTGTCCTCAAAGAGCAGGACACACTTCATTCTTGC
163347 TCTTTCTTTTGTCCTCAAAGAGCAGGAC
1 TCTTTCTTTTGTCCTCAAAGAGCAGGAC
163375 CATTTCGTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
43 25 0.40
44 7 0.11
45 30 0.48
ACGTcount: A:0.20, C:0.28, G:0.14, T:0.39
Consensus pattern (43 bp):
TCTTTCTTTTGTCCTCAAAGAGCAGGACACACTTCATTCTTGC
Found at i:163516 original size:40 final size:41
Alignment explanation
Indices: 163418--163520 Score: 120
Period size: 40 Copynumber: 2.5 Consensus size: 41
163408 GCAGGACGTG
* *
163418 CTCTTTTCCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTT
1 CTCTTTT-C-CTTTGTCCTCAAGAAGCAAGACACTTTCCTATT
* * *
163461 CTTTTTTCCTTTGTCCTCAAGGAGCAAGAC-CTATTTC-ATT
1 CTCTTTTCCTTTGTCCTCAAGAAGCAAGACACT-TTCCTATT
163501 CTCTTTTCCTTTGTCCTCAA
1 CTCTTTTCCTTTGTCCTCAA
163521 AAAGTGGGAC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
40 23 0.43
41 23 0.43
42 1 0.02
43 6 0.11
ACGTcount: A:0.17, C:0.29, G:0.11, T:0.43
Consensus pattern (41 bp):
CTCTTTTCCTTTGTCCTCAAGAAGCAAGACACTTTCCTATT
Found at i:164136 original size:20 final size:20
Alignment explanation
Indices: 164111--164165 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
164101 TTTAACTAGA
*
164111 TGTATCGATACATT-TTGCAT
1 TGTATCGATACATTGCT-CAT
164131 TGTATCGATACATTGCTCAT
1 TGTATCGATACATTGCTCAT
*
164151 TTTATCGATACATTG
1 TGTATCGATACATTG
164166 TATCGATACA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.25, C:0.16, G:0.15, T:0.44
Consensus pattern (20 bp):
TGTATCGATACATTGCTCAT
Found at i:164164 original size:13 final size:13
Alignment explanation
Indices: 164148--164178 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
164138 ATACATTGCT
*
164148 CATTTTATCGATA
1 CATTGTATCGATA
164161 CATTGTATCGATA
1 CATTGTATCGATA
164174 CATTG
1 CATTG
164179 CTAATTGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:164170 original size:33 final size:33
Alignment explanation
Indices: 164128--164193 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
164118 ATACATTTTG
* *
164128 CATTGTATCGATACATTGCTCATTTTATCGATA
1 CATTGTATCGATACATTGCTAATTGTATCGATA
164161 CATTGTATCGATACATTGCTAATTGTATCGATA
1 CATTGTATCGATACATTGCTAATTGTATCGATA
164194 TATTTTACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (33 bp):
CATTGTATCGATACATTGCTAATTGTATCGATA
Found at i:164187 original size:20 final size:18
Alignment explanation
Indices: 164111--164193 Score: 68
Period size: 20 Copynumber: 4.6 Consensus size: 18
164101 TTTAACTAGA
164111 TGTATCGATACATTTTGCAT
1 TGTATCGATACA--TTGCAT
164131 TGTATCGATACATTGCTCAT
1 TGTATCGATACATTG--CAT
*
164151 TTTATCGAT--A---CAT
1 TGTATCGATACATTGCAT
164164 TGTATCGATACATTGCTAAT
1 TGTATCGATACATTGC--AT
164184 TGTATCGATA
1 TGTATCGATA
164194 TATTTTACAA
Statistics
Matches: 52, Mismatches: 2, Indels: 18
0.72 0.03 0.25
Matches are distributed among these distances:
13 11 0.21
15 1 0.02
18 5 0.10
20 35 0.67
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (18 bp):
TGTATCGATACATTGCAT
Found at i:166558 original size:51 final size:51
Alignment explanation
Indices: 166486--166661 Score: 189
Period size: 51 Copynumber: 3.5 Consensus size: 51
166476 AAATTTCTAG
* * * * *
166486 ATTTTTCAT-CTCGGGGGTACTCCAA-TCCCGGTTTCATTTTCAAACCATCA
1 ATTTTTCATAATCGGGGATACTCCAACT-CCGATTTTATTTTCAAAACATCA
* * *
166536 ATTTTTCTTAATCGGGGATACTCCAACTCCGATTTTA-TTTCTAAAACACCC
1 ATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTTC-AAAACATCA
* *
166587 ATTTTTCCATAATCGGAGATACTCCAACTCCGATTTTATTTCCAAAACATCGA
1 ATTTTT-CATAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACATC-A
*
166640 A-TTTTCACAATCGGGGATACTC
1 ATTTTTCATAATCGGGGATACTC
166662 TAACCCCGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
50 12 0.11
51 48 0.46
52 41 0.39
53 4 0.04
ACGTcount: A:0.27, C:0.26, G:0.12, T:0.35
Consensus pattern (51 bp):
ATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACATCA
Found at i:166703 original size:79 final size:78
Alignment explanation
Indices: 166604--166898 Score: 319
Period size: 79 Copynumber: 3.8 Consensus size: 78
166594 CATAATCGGA
* * *
166604 GATACTCCAACTCCGATTTTATTTCCAAAACATCGAATTTTCACAATCGGGGATACTCTAACCCC
1 GATACTCCAACCCCGATTTTATTTCTAAAACATC-AATTTTCACAATCGGGGATACTCCAACCCC
166669 GTTATTTTCGAGGG
65 GTTATTTTCGAGGG
* * * *
166683 GACACTCCAACCCCGGTTTTATTTCTAAAACATCAATCTTT--C-ATTGGGGATACACCAA-CCC
1 GATACTCCAACCCCGATTTTATTTCTAAAACATCAAT-TTTCACAATCGGGGATACTCCAACCCC
*
166744 GTTATTTTTGAGGG
65 GTTATTTTCGAGGG
* * * * * * *
166758 GATACTCTAATCCCAATTTTATTTCTAAAATATCAATTTTTCATAATCGGGGATATTCCAACCCT
1 GATACTCCAACCCCGATTTTATTTCTAAAACATCAA-TTTTCACAATCGGGGATACTCCAACCCC
166823 GTTATTTTCGAGGG
65 GTTATTTTCGAGGG
** * * * * * *
166837 GATACTTTAACCCTGGTTTTATTTCTAAAATACCAATTCTCCACAATCGGGGATATTCCAAC
1 GATACTCCAACCCCGATTTTATTTCTAAAACATCAATT-TTCACAATCGGGGATACTCCAAC
166899 TCTGATTTTA
Statistics
Matches: 181, Mismatches: 28, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
75 49 0.27
76 14 0.08
77 1 0.01
78 18 0.10
79 99 0.55
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.34
Consensus pattern (78 bp):
GATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTCACAATCGGGGATACTCCAACCCCG
TTATTTTCGAGGG
Found at i:166911 original size:51 final size:51
Alignment explanation
Indices: 166834--166949 Score: 142
Period size: 51 Copynumber: 2.3 Consensus size: 51
166824 TTATTTTCGA
** * * * *
166834 GGGGATACTTTAACCCTGGTTTTATTTCTAAAATACCAATTCTCCACAATC
1 GGGGATACTCCAACTCTGATTTTATTTCCAAAACACCAATTCTCCACAATC
* * * *
166885 GGGGATATTCCAACTCTGATTTTATTTCCAAAACACTAATTTTTCACAATC
1 GGGGATACTCCAACTCTGATTTTATTTCCAAAACACCAATTCTCCACAATC
166936 GGGGATACTCCAAC
1 GGGGATACTCCAAC
166950 CCCATTATTT
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (51 bp):
GGGGATACTCCAACTCTGATTTTATTTCCAAAACACCAATTCTCCACAATC
Found at i:166969 original size:28 final size:30
Alignment explanation
Indices: 166933--167008 Score: 97
Period size: 28 Copynumber: 2.7 Consensus size: 30
166923 ATTTTTCACA
166933 ATCGGGGATACTCCAACCCCA-TTATTT-C
1 ATCGGGGATACTCCAACCCCAGTTATTTCC
*
166961 ATCGGGGATACTCCAA-CCTAGTTATTTCC
1 ATCGGGGATACTCCAACCCCAGTTATTTCC
* *
166990 A-AGAGGATACTCCAACCCC
1 ATCGGGGATACTCCAACCCC
167009 GGCTTTATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
27 3 0.07
28 34 0.83
29 4 0.10
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.25
Consensus pattern (30 bp):
ATCGGGGATACTCCAACCCCAGTTATTTCC
Found at i:167060 original size:51 final size:51
Alignment explanation
Indices: 166994--167110 Score: 171
Period size: 51 Copynumber: 2.3 Consensus size: 51
166984 ATTTCCAAGA
* *
166994 GGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCACAATCAG
1 GGATACTCCAACCCCGACCTTATTTCCAAAATATTGATTTCTCACAATCAG
* * * **
167045 GGATACTTCAACCCCGACCTTATTTCTAAAATATTGATTTCTCATAATTGG
1 GGATACTCCAACCCCGACCTTATTTCCAAAATATTGATTTCTCACAATCAG
167096 GGATACTCCAACCCC
1 GGATACTCCAACCCC
167111 ATTATTTTCA
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (51 bp):
GGATACTCCAACCCCGACCTTATTTCCAAAATATTGATTTCTCACAATCAG
Found at i:167143 original size:158 final size:158
Alignment explanation
Indices: 166803--167144 Score: 393
Period size: 158 Copynumber: 2.2 Consensus size: 158
166793 ATTTTTCATA
* * * * * ** * * *
166803 ATCGGGGATATTCCAACCCTGTTATTTTCGAGGGGATACTTTAACCCTGGTTTTATTTCTAAAAT
1 ATCGGGGATACTCCAACCCAGTTATTTCCAAGAGGATACTCCAACCCCGGCTTTATTTCCAAAAT
* * * ** *
166868 ACCAATTCTCCACAATCGGGGATATTCCAACTCTGATTTTATTTCCAAAACACTAATTTTTCACA
66 ACCAATTCTCCACAATCAGGGATATTCCAACCCCGACCTTATTTCCAAAACACTAATTTCTCACA
166933 ATCGGGGATACTCCAACCCCATTATTTC
131 ATCGGGGATACTCCAACCCCATTATTTC
*
166961 ATCGGGGATACTCCAACCTAGTTATTTCCAAGAGGATACTCCAACCCCGGCTTTATTTCCAAAAT
1 ATCGGGGATACTCCAACCCAGTTATTTCCAAGAGGATACTCCAACCCCGGCTTTATTTCCAAAAT
*** * * * *
167026 ATTGATT-TCTCACAATCAGGGATACTT-CAACCCCGACCTTATTTCTAAAATATTGATTTCTCA
66 ACCAATTCTC-CACAATCAGGGATA-TTCCAACCCCGACCTTATTTCCAAAACACTAATTTCTCA
* *
167089 TAATTGGGGATACTCCAACCCCATTATTTTC
129 CAATCGGGGATACTCCAACCCCATTA-TTTC
*
167120 A-CGGGGATACTCCAACCCCGTTATT
1 ATCGGGGATACTCCAACCCAGTTATT
167145 ATCTCCAAAA
Statistics
Matches: 153, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
157 2 0.01
158 144 0.94
159 7 0.05
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (158 bp):
ATCGGGGATACTCCAACCCAGTTATTTCCAAGAGGATACTCCAACCCCGGCTTTATTTCCAAAAT
ACCAATTCTCCACAATCAGGGATATTCCAACCCCGACCTTATTTCCAAAACACTAATTTCTCACA
ATCGGGGATACTCCAACCCCATTATTTC
Found at i:168429 original size:13 final size:13
Alignment explanation
Indices: 168411--168436 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
168401 CAATTTTTTG
168411 TGTATCGATACAT
1 TGTATCGATACAT
168424 TGTATCGATACAT
1 TGTATCGATACAT
168437 ACTTTGAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:168453 original size:32 final size:33
Alignment explanation
Indices: 168391--168454 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
168381 TACAAGCCAA
** *
168391 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGAGTATCGATACAT
168424 TGTATCGATAC-ATACTTTGAGTATCGATACA
1 TGTATCGATACAATACTTTGAGTATCGATACA
168455 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGAGTATCGATACAT
Found at i:169105 original size:13 final size:13
Alignment explanation
Indices: 169087--169123 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
169077 ACTATTCATG
169087 TATCGATACATTA
1 TATCGATACATTA
* *
169100 TATCGATACAGTG
1 TATCGATACATTA
169113 TATCGATACAT
1 TATCGATACAT
169124 CATAAATAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (13 bp):
TATCGATACATTA
Found at i:170173 original size:13 final size:13
Alignment explanation
Indices: 170155--170179 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
170145 ATTACTCAAA
170155 TGTATCGATACAT
1 TGTATCGATACAT
170168 TGTATCGATACA
1 TGTATCGATACA
170180 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:170230 original size:52 final size:52
Alignment explanation
Indices: 170188--170313 Score: 207
Period size: 52 Copynumber: 2.4 Consensus size: 52
170178 CACTGATCTT
*
170188 TGTATCGATACTTGCAGGCAAATCTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATCTGCCCAGATGTATCGATACACTATGAAA
* * * *
170240 TGTATCGATACATACAAGCAAATTTGCCCAGATATATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATCTGCCCAGATGTATCGATACACTATGAAA
170292 TGTATCGATACATGCAGGCAAA
1 TGTATCGATACATGCAGGCAAA
170314 ATTTCATATT
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATCTGCCCAGATGTATCGATACACTATGAAA
Found at i:177515 original size:12 final size:11
Alignment explanation
Indices: 177493--177568 Score: 61
Period size: 12 Copynumber: 6.9 Consensus size: 11
177483 AGAGAAAGAA
*
177493 GAGAGAGGAGG
1 GAGATAGGAGG
177504 GATGATAGGAGG
1 GA-GATAGGAGG
177516 AGAGATAGGA--
1 -GAGATAGGAGG
*
177526 GAGATAGTA--
1 GAGATAGGAGG
177535 GAGATAGGAGG
1 GAGATAGGAGG
177546 GATGATAGGAGG
1 GA-GATAGGAGG
*
177558 AGAGACAGGAG
1 -GAGATAGGAG
177569 AGATAATAGA
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
9 16 0.29
11 4 0.07
12 31 0.56
13 4 0.07
ACGTcount: A:0.39, C:0.01, G:0.49, T:0.11
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:177529 original size:33 final size:30
Alignment explanation
Indices: 177483--177573 Score: 76
Period size: 33 Copynumber: 2.8 Consensus size: 30
177473 TAGCCCTCAA
* *
177483 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGG
1 AGAGATAGGAGAGAGAGGA--GA-GATAGGAGG
* *
177516 AGAGATAGGAGAGATAGTAGAGATAGGAGG
1 AGAGATAGGAGAGAGAGGAGAGATAGGAGG
177546 -GATGATAGGAGGAGAGACAGGAGAGATA
1 AGA-GATAGGA-GAGAG--AGGAGAGATA
177574 ATAGATAGAG
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
29 2 0.04
30 16 0.33
31 6 0.12
33 24 0.50
ACGTcount: A:0.44, C:0.01, G:0.45, T:0.10
Consensus pattern (30 bp):
AGAGATAGGAGAGAGAGGAGAGATAGGAGG
Found at i:177538 original size:11 final size:9
Alignment explanation
Indices: 177513--177573 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
177503 GGATGATAGG
177513 AGGAGAGAT
1 AGGAGAGAT
177522 AGGAGAGAT
1 AGGAGAGAT
*
177531 AGTAGAGAT
1 AGGAGAGAT
*
177540 AGGAGGGAT
1 AGGAGAGAT
* *
177549 --GATAG-G
1 AGGAGAGAT
*
177555 AGGAGAGAC
1 AGGAGAGAT
177564 AGGAGAGAT
1 AGGAGAGAT
177573 A
1 A
177574 ATAGATAGAG
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 33 0.82
ACGTcount: A:0.43, C:0.02, G:0.44, T:0.11
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:177544 original size:42 final size:42
Alignment explanation
Indices: 177483--177601 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
177473 TAGCCCTCAA
* * *
177483 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
177525 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
177567 AGAGATAATAGATAGAGGAGGGATGATAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
177602 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.43, C:0.01, G:0.45, T:0.11
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:185019 original size:21 final size:22
Alignment explanation
Indices: 184993--185035 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
184983 AGAGAGCATT
*
184993 AAAAA-TTTTATTAAGGGGGAG
1 AAAAATTTTTATTAAAGGGGAG
185014 AAAAATTTTTATTAAAGGGGAG
1 AAAAATTTTTATTAAAGGGGAG
185036 TTATATATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.44, C:0.00, G:0.26, T:0.30
Consensus pattern (22 bp):
AAAAATTTTTATTAAAGGGGAG
Found at i:185631 original size:19 final size:19
Alignment explanation
Indices: 185607--185652 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
185597 GTATTCATAC
185607 ATAAAGGTTAACTTAGGCT
1 ATAAAGGTTAACTTAGGCT
*
185626 ATAAAGGTTGACTTAGGCT
1 ATAAAGGTTAACTTAGGCT
*
185645 ACAAAGGT
1 ATAAAGGT
185653 CAGAACCCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (19 bp):
ATAAAGGTTAACTTAGGCT
Found at i:185748 original size:32 final size:33
Alignment explanation
Indices: 185686--185749 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
185676 CACACCCAGA
*
185686 TGTATCGATACATATTCCTTTGTATAGATACAT
1 TGTATCGATACATATTCCTTTGTAGAGATACAT
* *
185719 TGTATCGATACATGTT-CTTTGTAGCGATACA
1 TGTATCGATACATATTCCTTTGTAGAGATACA
185750 AACTAATATG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.41
Consensus pattern (33 bp):
TGTATCGATACATATTCCTTTGTAGAGATACAT
Found at i:192012 original size:13 final size:13
Alignment explanation
Indices: 191994--192018 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
191984 CATAAAATGT
191994 TGTATCGATACAA
1 TGTATCGATACAA
192007 TGTATCGATACA
1 TGTATCGATACA
192019 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:192015 original size:33 final size:33
Alignment explanation
Indices: 191978--192040 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
191968 ACGATCCGTG
191978 TCGATACATAAAATGTTGTATCGATACAATGTA
1 TCGATACATAAAATGTTGTATCGATACAATGTA
*** *
192011 TCGATACATATTTTTTTGTATCGATACAAT
1 TCGATACATAAAATGTTGTATCGATACAAT
192041 TTAAGCTACT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (33 bp):
TCGATACATAAAATGTTGTATCGATACAATGTA
Found at i:192102 original size:13 final size:13
Alignment explanation
Indices: 192084--192108 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
192074 ATTACTCACA
192084 TGTATCGATACAT
1 TGTATCGATACAT
192097 TGTATCGATACA
1 TGTATCGATACA
192109 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:192245 original size:52 final size:52
Alignment explanation
Indices: 192117--192237 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
192107 CACTGATCTT
*
192117 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
192169 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
192221 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
192238 ATAAATTTTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:197287 original size:20 final size:20
Alignment explanation
Indices: 197242--197315 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
197232 TTCTACAATT
* *
197242 TGTATCGATACAAATAGTAAA
1 TGTATCGATACATA-AGTGAA
* *
197263 TGTATCGAGACATAAGTGCA
1 TGTATCGATACATAAGTGAA
*
197283 TGTATCGATATATAAGTGAA
1 TGTATCGATACATAAGTGAA
197303 TGTATCGATACAT
1 TGTATCGATACAT
197316 GCCTAAAATG
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
20 33 0.73
21 12 0.27
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATAAGTGAA
Found at i:199024 original size:34 final size:35
Alignment explanation
Indices: 198986--199052 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
198976 CCTTACAACA
198986 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
199020 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
199053 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:199539 original size:13 final size:13
Alignment explanation
Indices: 199521--199547 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
199511 TACTATTTAT
199521 AGTGTATCGATAC
1 AGTGTATCGATAC
199534 AGTGTATCGATAC
1 AGTGTATCGATAC
199547 A
1 A
199548 TGAATAGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (13 bp):
AGTGTATCGATAC
Found at i:203550 original size:52 final size:51
Alignment explanation
Indices: 203472--203620 Score: 235
Period size: 52 Copynumber: 2.9 Consensus size: 51
203462 CGAAATATGA
203472 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTG-ATAGTGTATCGATACATCTGGGC
* *
203524 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTGATAGTGTATCGATACATCTGGGC
**
203576 AAATTTGCCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGAT-AGTGTATCGATACA
203621 ATGTATCGAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
51 2 0.02
52 85 0.96
53 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTGATAGTGTATCGATACATCTGGGC
Found at i:203627 original size:13 final size:13
Alignment explanation
Indices: 203609--203633 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
203599 CAAAGATCAG
203609 TGTATCGATACAA
1 TGTATCGATACAA
203622 TGTATCGATACA
1 TGTATCGATACA
203634 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:203714 original size:13 final size:13
Alignment explanation
Indices: 203696--203720 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
203686 CAAAAAAAAA
203696 TGTATCGATACAT
1 TGTATCGATACAT
203709 TGTATCGATACA
1 TGTATCGATACA
203721 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:204179 original size:46 final size:46
Alignment explanation
Indices: 204127--204229 Score: 188
Period size: 46 Copynumber: 2.2 Consensus size: 46
204117 TTTATACAAA
*
204127 CTCTCCCCCTTAATACGTTGTCACCCTTAAACCAATAAACAATAAT
1 CTCTCCCCCTTAATACGATGTCACCCTTAAACCAATAAACAATAAT
204173 CTCTCCCCCTTAATACGATGTCACCCTTAAACCAATAAACAATAAT
1 CTCTCCCCCTTAATACGATGTCACCCTTAAACCAATAAACAATAAT
*
204219 CTCTTCCCCTT
1 CTCTCCCCCTT
204230 TTTGTTATAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 55 1.00
ACGTcount: A:0.32, C:0.35, G:0.04, T:0.29
Consensus pattern (46 bp):
CTCTCCCCCTTAATACGATGTCACCCTTAAACCAATAAACAATAAT
Found at i:205102 original size:13 final size:13
Alignment explanation
Indices: 205084--205108 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
205074 ACTGAAGCAA
205084 TGTATCGATACAT
1 TGTATCGATACAT
205097 TGTATCGATACA
1 TGTATCGATACA
205109 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:205708 original size:23 final size:24
Alignment explanation
Indices: 205663--205709 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
205653 CAAAGAATTG
*
205663 AACACAAATTCAATTAAGCACAAA
1 AACACAAATTCAATTAAGAACAAA
205687 AACACAAA-TCAATTGAA-AACAAA
1 AACACAAATTCAATT-AAGAACAAA
205710 TTTTCAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.62, C:0.19, G:0.04, T:0.15
Consensus pattern (24 bp):
AACACAAATTCAATTAAGAACAAA
Found at i:207099 original size:21 final size:21
Alignment explanation
Indices: 207075--207116 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
207065 ATCCATTTCT
* *
207075 TCATTTTCATCAACCTCTTGA
1 TCATCTTCATCAACATCTTGA
*
207096 TCATCTTCATCATCATCTTGA
1 TCATCTTCATCAACATCTTGA
207117 ACGGTTGATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.29, G:0.05, T:0.43
Consensus pattern (21 bp):
TCATCTTCATCAACATCTTGA
Found at i:213489 original size:20 final size:20
Alignment explanation
Indices: 213451--213490 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
213441 TGGGGATTGT
* *
213451 GTTGGTCGATCTTGGTTCAC
1 GTTGGTCGATCCTGATTCAC
213471 GTTGGTCGATCCTGATTCAC
1 GTTGGTCGATCCTGATTCAC
213491 AATGGTTAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.12, C:0.23, G:0.28, T:0.38
Consensus pattern (20 bp):
GTTGGTCGATCCTGATTCAC
Found at i:213496 original size:20 final size:20
Alignment explanation
Indices: 213453--213496 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
213443 GGGATTGTGT
* * **
213453 TGGTCGATCTTGGTTCACGT
1 TGGTCGATCCTGATTCACAA
213473 TGGTCGATCCTGATTCACAA
1 TGGTCGATCCTGATTCACAA
213493 TGGT
1 TGGT
213497 TAACCATTGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.16, C:0.20, G:0.27, T:0.36
Consensus pattern (20 bp):
TGGTCGATCCTGATTCACAA
Found at i:213542 original size:15 final size:15
Alignment explanation
Indices: 213522--213559 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
213512 AAAATTCTCT
213522 TTAATTAAACAATTA
1 TTAATTAAACAATTA
**
213537 TTAATTAATTAATTA
1 TTAATTAAACAATTA
213552 TT-ATTAAA
1 TTAATTAAA
213560 GTGTGTGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (15 bp):
TTAATTAAACAATTA
Found at i:218335 original size:50 final size:50
Alignment explanation
Indices: 218275--218383 Score: 164
Period size: 50 Copynumber: 2.2 Consensus size: 50
218265 GAACAGTACT
* **
218275 TGTATCGATACATTCTATTTTTTACCTAAATGTATTGATACATTTTTCAA
1 TGTATTGATACATTCTATTTTTTACCTAAATGTACCGATACATTTTTCAA
* * *
218325 TGTATTGATACATTCTGTTTTTTCCCTAGATGTACCGATACATTTTTCAA
1 TGTATTGATACATTCTATTTTTTACCTAAATGTACCGATACATTTTTCAA
218375 TGTATTGAT
1 TGTATTGAT
218384 GCATCTAGTT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.27, C:0.15, G:0.11, T:0.48
Consensus pattern (50 bp):
TGTATTGATACATTCTATTTTTTACCTAAATGTACCGATACATTTTTCAA
Found at i:219293 original size:21 final size:23
Alignment explanation
Indices: 219264--219306 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
219254 ATCATCTAAA
219264 CAGCTCATGT-CAATGCATTTTG
1 CAGCTCATGTACAATGCATTTTG
*
219286 CAGC-CATGTACCATGCATTTT
1 CAGCTCATGTACAATGCATTTT
219307 AACATGTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (23 bp):
CAGCTCATGTACAATGCATTTTG
Found at i:219549 original size:204 final size:204
Alignment explanation
Indices: 219195--219601 Score: 744
Period size: 204 Copynumber: 2.0 Consensus size: 204
219185 ATATGGTAGG
219195 TTTAGGTGTTTTGATGTTTTCAAGCTTTTGGTGTGTTTGAAATGTCATGTTTCATCTCCATCATC
1 TTTAGGTGTTTTGATGTTTTCAAGCTTTTGGTGTGTTTGAAATGTCATGTTTCATCTCCATCATC
*
219260 TAAACAGCTCATGTCAATGCATTTTGCAGCCATGTACCATGCATTTTAACATGTCAAACATCTAG
66 TAAACAGCCCATGTCAATGCATTTTGCAGCCATGTACCATGCATTTTAACATGTCAAACATCTAG
*
219325 CTAATCTGTTCATGCATCTTGCTTGTCATGTCCTTATGTGTTTGCTACATTTTCATGTCAAGATG
131 CTAATCTGTTCATACATCTTGCTTGTCATGTCCTTATGTGTTTGCTACATTTTCATGTCAAGATG
219390 CATGCTTGT
196 CATGCTTGT
* *
219399 TTTAGGTGTTTTAGGTGTTTTCATGCTTTTGGTGTGTTTGAAATGTCATGTTTCATCTCCATCAT
1 TTTAGGTGTTTT-GATGTTTTCAAGCTTTTGGTGTGTTTGAAATGTCATGTTTCATCTCCATCAT
*
219464 CTAAACAGCCCATGTCAATGCATTTTG-AGCCATGTACCATGCATTTTAACATGTCCAACATCTA
65 CTAAACAGCCCATGTCAATGCATTTTGCAGCCATGTACCATGCATTTTAACATGTCAAACATCTA
*
219528 GCTAATCTGTTCATACATCTTGCTTGTCATGTCCTTATGTGTTTGCTGCATTTTCATGTCAAGAT
130 GCTAATCTGTTCATACATCTTGCTTGTCATGTCCTTATGTGTTTGCTACATTTTCATGTCAAGAT
219593 GCATGCTTG
195 GCATGCTTG
219602 CTTGTATTTG
Statistics
Matches: 196, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
204 120 0.61
205 76 0.39
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.42
Consensus pattern (204 bp):
TTTAGGTGTTTTGATGTTTTCAAGCTTTTGGTGTGTTTGAAATGTCATGTTTCATCTCCATCATC
TAAACAGCCCATGTCAATGCATTTTGCAGCCATGTACCATGCATTTTAACATGTCAAACATCTAG
CTAATCTGTTCATACATCTTGCTTGTCATGTCCTTATGTGTTTGCTACATTTTCATGTCAAGATG
CATGCTTGT
Found at i:225535 original size:22 final size:22
Alignment explanation
Indices: 225480--225547 Score: 61
Period size: 22 Copynumber: 3.1 Consensus size: 22
225470 CAAAATGACG
* *
225480 AAAAAGT-CCAAAGCAAAAGCACA
1 AAAAAGTGCAAAAG-AAAAACA-A
225503 AAAAA-TG-AAAAGAAAAACAA
1 AAAAAGTGCAAAAGAAAAACAA
* *
225523 AAAAAGTGCAAAAGCAAAATAA
1 AAAAAGTGCAAAAGAAAAACAA
225545 AAA
1 AAA
225548 TGGGAACAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
20 6 0.16
21 8 0.21
22 19 0.50
23 5 0.13
ACGTcount: A:0.71, C:0.12, G:0.12, T:0.06
Consensus pattern (22 bp):
AAAAAGTGCAAAAGAAAAACAA
Found at i:226973 original size:27 final size:27
Alignment explanation
Indices: 226907--227507 Score: 713
Period size: 27 Copynumber: 21.9 Consensus size: 27
226897 TTTCCTTTCA
*
226907 AAGTCCACAACTCCGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCATCCTTTT
* ** *
226934 AAAGTCCATAACTTTGTGACATCCTTTT
1 -AAGTCCACAACTCCGTGGCATCCTTTT
** *
226962 AAGTCCACAACTTTGTGGCATCTTTTT
1 AAGTCCACAACTCCGTGGCATCCTTTT
*
226989 AAGTCCACAACTCCTTGGCATCCTTTT
1 AAGTCCACAACTCCGTGGCATCCTTTT
* *
227016 AAGTCCACAACTTCATGGCA-CCTTTTT
1 AAGTCCACAACTCCGTGGCATCC-TTTT
***
227043 AAAGTCCACAACTTTATGGCATCCTTTT
1 -AAGTCCACAACTCCGTGGCATCCTTTT
*
227071 AAGTCCATAACTCCGTGGCATCCTTTT
1 AAGTCCACAACTCCGTGGCATCCTTTT
*
227098 AAGTCCACAACTACGTGGCA-CTCTTTT
1 AAGTCCACAACTCCGTGGCATC-CTTTT
* *
227125 AAAGTCCATAACTCCATGGCATCCTTTT
1 -AAGTCCACAACTCCGTGGCATCCTTTT
* * *
227153 ATGTCCATAACTCTGTGGCATCCTTTT
1 AAGTCCACAACTCCGTGGCATCCTTTT
* * *
227180 GAGTCCACAACTCCATGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCATCCTTTT
* *
227207 GAGTCCACAACTCCGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCATCCTTTT
* * *
227234 AAAGTCCACAAGTTCATGGCATCCTTTT
1 -AAGTCCACAACTCCGTGGCATCCTTTT
*
227262 GAGTCCACAACTCCGTGGCATCCTTTT
1 AAGTCCACAACTCCGTGGCATCCTTTT
227289 GAAGTCCACAACTCCGTGGCATCCTTTT
1 -AAGTCCACAACTCCGTGGCATCCTTTT
* *
227317 GAAGTCAACAACTTCGTGGCATCCTTTT
1 -AAGTCCACAACTCCGTGGCATCCTTTT
*
227345 GAAGTCCACAACTCTGTGGCATCCTTTT
1 -AAGTCCACAACTCCGTGGCATCCTTTT
227373 GAAGTCCACAACTCCGTGGCATCCTTTT
1 -AAGTCCACAACTCCGTGGCATCCTTTT
227401 AAAGTCCACAACTCCGTGGCATCCTTTT
1 -AAGTCCACAACTCCGTGGCATCCTTTT
* * *
227429 GAGTCCACAACTCCGTGGCATTCTTTC
1 AAGTCCACAACTCCGTGGCATCCTTTT
227456 AAGTCCACAACTCCGTGGCAT-CTTATT
1 AAGTCCACAACTCCGTGGCATCCTT-TT
* * * *
227483 AAGCCCACAAGTCAGTGGCACCCTT
1 AAGTCCACAACTCCGTGGCATCCTT
227508 CCAAAGCCCA
Statistics
Matches: 503, Mismatches: 60, Indels: 20
0.86 0.10 0.03
Matches are distributed among these distances:
26 6 0.01
27 271 0.54
28 223 0.44
29 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (27 bp):
AAGTCCACAACTCCGTGGCATCCTTTT
Found at i:227017 original size:82 final size:82
Alignment explanation
Indices: 226907--227507 Score: 681
Period size: 82 Copynumber: 7.3 Consensus size: 82
226897 TTTCCTTTCA
* * ** *
226907 AAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCATAACTTTGTGACATCCTTTT-AAGTCCACA
1 AAGTCCACAACTCCGTGGCATCCTTTT-AAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACA
**
226971 ACTTTGTGGCATCTTTTT
65 ACTCCGTGGCATCTTTTT
* * *
226989 AAGTCCACAACTCCTTGGCATCCTTTTAAGTCCACAACTTCATGGCA-CCTTTTTAAAGTCCACA
1 AAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCATCC-TTTTAAAGTCCACA
*** *
227053 ACTTTATGGCATCCTTTT
65 ACTCCGTGGCATCTTTTT
* * *
227071 AAGTCCATAACTCCGTGGCATCCTTTTAAGTCCACAACTACGTGGCA-CTCTTTTAAAGTCCATA
1 AAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCATC-CTTTTAAAGTCCACA
* *
227135 ACTCCATGGCATCCTTTT
65 ACTCCGTGGCATCTTTTT
* * * * * * *
227153 ATGTCCATAACTCTGTGGCATCCTTTTGAGTCCACAACTCCATGGCACCCTTTT-GAGTCCACAA
1 AAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAA
* *
227217 CTCCGTGGCACCCTTTTA
66 CTCCGTGGCA-TCTTTTT
* * * * *
227235 AAGTCCACAAGTTCATGGCATCCTTTTGAGTCCACAACTCCGTGGCATCCTTTTGAAGTCCACAA
1 AAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAA
*
227300 CTCCGTGGCATCCTTTTG
66 CTCCGTGGCAT-CTTTTT
* * * *
227318 AAGTCAACAACTTCGTGGCATCCTTTTGAAGTCCACAACTCTGTGGCATCCTTTTGAAGTCCACA
1 AAGTCCACAACTCCGTGGCATCCTTTT-AAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACA
*
227383 ACTCCGTGGCATCCTTTTA
65 ACTCCGTGGCAT-CTTTTT
* * *
227402 AAGTCCACAACTCCGTGGCATCCTTTTGAGTCCACAACTCCGTGGCATTC-TTTCAAGTCCACAA
1 AAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAA
*
227466 CTCCGTGGCATCTTATT
66 CTCCGTGGCATCTTTTT
* * * *
227483 AAGCCCACAAGTCAGTGGCACCCTT
1 AAGTCCACAACTCCGTGGCATCCTT
227508 CCAAAGCCCA
Statistics
Matches: 456, Mismatches: 55, Indels: 17
0.86 0.10 0.03
Matches are distributed among these distances:
80 2 0.00
81 62 0.14
82 244 0.54
83 70 0.15
84 78 0.17
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (82 bp):
AAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAA
CTCCGTGGCATCTTTTT
Found at i:227523 original size:28 final size:28
Alignment explanation
Indices: 227211--227911 Score: 342
Period size: 28 Copynumber: 25.1 Consensus size: 28
227201 CCTTTTGAGT
* * * *
227211 CCACAACTCCGTGGCACCCTTTTAAAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* ** *
227239 CCACAAGTTCA-TGGCATCCTTT-TGAGT
1 CCACAAG-TCAGTGGCACCCTTTCAAAGC
* * * ** *
227266 CCACAACTCCGTGGCATCCTTTTGAAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * * ** *
227294 CCACAACTCCGTGGCATCCTTTTGAAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * * ** *
227322 CAACAACTTC-GTGGCATCCTTTTGAAGT
1 CCACAA-GTCAGTGGCACCCTTTCAAAGC
* * * ** *
227350 CCACAACTCTGTGGCATCCTTTTGAAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * * * *
227378 CCACAACTCCGTGGCATCCTTTTAAAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * * ** *
227406 CCACAACTCCGTGGCATCCTTT-TGAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * ** *
227433 CCACAACTCCGTGGCATTCTTTC-AAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * * *
227460 CCACAACTCCGTGGCA-TCTTAT-TAAGC
1 CCACAAGTCAGTGGCACCCTT-TCAAAGC
*
227487 CCACAAGTCAGTGGCACCCTTCCAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
*
227515 CCATAAGTCAGTGGCACCCTTTCAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * *
227543 CTACAAGTTAGTGGCATCCTTTCAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* ** * *
227571 CCATAAGTCAGCAGCATCCTTTCAAAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
** *
227599 CTGCAAATCTA-TGGCA-CCTTTCCAAAAGC
1 CCACAAGTC-AGTGGCACCCTTT-C-AAAGC
* * * *
227628 CTACAAGTTAGTGGCATCTTTTCAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* **
227656 CCACAAATCTA-TGGCACTTTTTCAAAGC
1 CCACAAGTC-AGTGGCACCCTTTCAAAGC
** *
227684 CCACAAGTCAGTGGCATCTTTTTAAAAGC
1 CCACAAGTCAGTGGCA-CCCTTTCAAAGC
* * *
227713 CCATAAATCAGTGGCACCTTTTCAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * * *
227741 TCACAAGTCAGTCGTATCCTTTCAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
*
227769 CCACAAGTCAATGGCACCCTTTCAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * * * * *
227797 TCATAAGTGAGTGGAATCCTTTCAAAGT
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * *
227825 CCACAAGTCAGTGGTACCTTTTGAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
* * * *
227853 CCATAAGTGAATGGCACCTTTTCAAAGC
1 CCACAAGTCAGTGGCACCCTTTCAAAGC
** * * *
227881 TAACAAGTTAGTGTCACCCTAGTCAAAGC
1 CCACAAGTCAGTGGCACCCT-TTCAAAGC
227910 CC
1 CC
227912 GTAAGAGTTG
Statistics
Matches: 553, Mismatches: 101, Indels: 37
0.80 0.15 0.05
Matches are distributed among these distances:
26 6 0.01
27 89 0.16
28 400 0.72
29 54 0.10
30 4 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.27
Consensus pattern (28 bp):
CCACAAGTCAGTGGCACCCTTTCAAAGC
Found at i:227549 original size:56 final size:56
Alignment explanation
Indices: 227360--227916 Score: 383
Period size: 56 Copynumber: 9.9 Consensus size: 56
227350 CCACAACTCT
** * * * * * * * * *
227360 GTGGCATCCTTTTGAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAACTCC
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTCA
** * * * ** * * * *
227416 GTGGCATCCTTT-TGAGTCCACAACTCCGTGGCATTCTTTC-AAGTCCACAACTCC
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTCA
* *
227470 GTGGCAT-CTTAT-TAAGCCCACAAGTCAGTGGCACCCTTCCAAAGCCCATAAGTCA
1 GTGGCATCCTT-TCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTCA
* * * *
227525 GTGGCACCCTTTCAAAGCCTACAAGTTAGTGGCATCCTTTCAAAGCCCATAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTCA
** * ** * * * *
227581 GCAGCATCCTTTCAAAGTCTGCAAATCTA-TGGCA-CCTTTCCAAAAGCCTACAAGTTA
1 GTGGCATCCTTTCAAAGCCCACAAGTC-AGTGGCACCCTTT-C-AAAGCCCATAAGTCA
* * ** *
227638 GTGGCATCTTTTCAAAGCCCACAAATCTA-TGGCACTTTTTCAAAGCCCACAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTC-AGTGGCACCCTTTCAAAGCCCATAAGTCA
* * * * * * *
227694 GTGGCATCTTTTTAAAAGCCCATAAATCAGTGGCACCTTTTCAAAGCTCACAAGTCA
1 GTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTCA
* * * * *
227751 GTCGTATCCTTTCAAAGCCCACAAGTCAATGGCACCCTTTCAAAGCTCATAAGTGA
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTCA
* * * * * *
227807 GTGGAATCCTTTCAAAGTCCACAAGTCAGTGGTACCTTTTGAAAGCCCATAAGTGA
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTCA
* ** * * * *
227863 ATGGCA-CCTTTTCAAAGCTAACAAGTTAGTGTCACCCTAGTCAAAGCCCGTAAG
1 GTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCACCCT-TTCAAAGCCCATAAG
227917 AGTTGGCGAC
Statistics
Matches: 414, Mismatches: 75, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
53 3 0.01
54 43 0.10
55 48 0.12
56 215 0.52
57 102 0.25
58 3 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (56 bp):
GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTCA
Found at i:227654 original size:141 final size:139
Alignment explanation
Indices: 227483--227888 Score: 394
Period size: 141 Copynumber: 2.9 Consensus size: 139
227473 GCATCTTATT
*
227483 AAGCCCACAAGTCAGTGGCACCCTTCCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGCCTACA
1 AAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGCC-ACA
* *
227548 AGTTAGTGGCATCCTTTCAAAGCCCATAAGTCAGCAGCATCC-TTTCAAAGTCTGCA-AA-TCTA
65 AGTCAGTGGCATCCTTTAAAAGCCCATAAGTCAGCAGCA-CCTTTTCAAAG-CT-CACAAGTC-A
*
227610 -TGGCA-CCTTTCCAA
126 GTCGCATCCTTT-C-A
* * * * * * **
227624 AAGCCTACAAGTTAGTGGCATCTTTTCAAAGCCCACAAATCTA-TGGCACTTTTTCAAAGCCCAC
1 AAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTC-AGTGGCACCCTTTCAAAG-CCAC
* * **
227688 AAGTCAGTGGCATCTTTTTAAAAGCCCATAAATCAGTGGCACCTTTTCAAAGCTCACAAGTCAGT
64 AAGTCAGTGGCATC-CTTTAAAAGCCCATAAGTCAGCAGCACCTTTTCAAAGCTCACAAGTCAGT
*
227753 CGTATCCTTTCA
128 CGCATCCTTTCA
* * * * *
227765 AAGCCCACAAGTCAATGGCACCCTTTCAAAGCTCATAAGTGAGTGGAATCCTTTCAAAGTCCACA
1 AAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAG-CCACA
* * * *** *
227830 AGTCAGTGGTA-CCTTTTGAAAGCCCATAAGTGAATGGCACCTTTTCAAAGCTAACAAGT
65 AGTCAGTGGCATCC-TTTAAAAGCCCATAAGTCAGCAGCACCTTTTCAAAGCTCACAAGT
227889 TAGTGTCACC
Statistics
Matches: 217, Mismatches: 38, Indels: 21
0.79 0.14 0.08
Matches are distributed among these distances:
140 44 0.20
141 130 0.60
142 38 0.18
143 5 0.02
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (139 bp):
AAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGCCACAA
GTCAGTGGCATCCTTTAAAAGCCCATAAGTCAGCAGCACCTTTTCAAAGCTCACAAGTCAGTCGC
ATCCTTTCA
Found at i:228801 original size:20 final size:20
Alignment explanation
Indices: 228776--228848 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 20
228766 TACTTAGATA
*
228776 TATCGATACATTTTTTAATG
1 TATCGATACATTTTTCAATG
* * *
228796 TATCGATACATGTATGAATG
1 TATCGATACATTTTTCAATG
*
228816 AATCGATAC-TGTTTTCAATG
1 TATCGATACAT-TTTTCAATG
228836 TATCGATACATTT
1 TATCGATACATTT
228849 ATTCTGTTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
19 1 0.02
20 41 0.95
21 1 0.02
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (20 bp):
TATCGATACATTTTTCAATG
Found at i:233605 original size:27 final size:27
Alignment explanation
Indices: 233575--233633 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
233565 CAGGGTTGGG
*
233575 GTATCCCCTTAGAGGAATGGGGTTGAA
1 GTATCCCCTCAGAGGAATGGGGTTGAA
* *
233602 GTATCCCCTCGGAGGAATGGGGTTGGA
1 GTATCCCCTCAGAGGAATGGGGTTGAA
233629 GTATC
1 GTATC
233634 TCTAATGATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.22, C:0.17, G:0.36, T:0.25
Consensus pattern (27 bp):
GTATCCCCTCAGAGGAATGGGGTTGAA
Found at i:235959 original size:20 final size:20
Alignment explanation
Indices: 235932--235988 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
235922 GTAAAAAGAC
235932 AAAATGTATCGATACATT-A
1 AAAATGTATCGATACATTCA
*
235951 AAGAATGTATCAATACATTCA
1 AA-AATGTATCGATACATTCA
* *
235972 TACATGTATCGATACAT
1 AAAATGTATCGATACAT
235989 CTAGGTAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
19 2 0.06
20 28 0.88
21 2 0.06
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.32
Consensus pattern (20 bp):
AAAATGTATCGATACATTCA
Found at i:236000 original size:71 final size:71
Alignment explanation
Indices: 235907--236070 Score: 231
Period size: 71 Copynumber: 2.3 Consensus size: 71
235897 TTATTTAATT
*
235907 TATCGATACATCTGGGTAAAAAGACAAAATGTATCGATACATT-AAAGAATGTATCAATACATTC
1 TATCGATACATCTAGGTAAAAAGACAAAATGTATCGATACATTCAAA-AATGTATCAATACATTC
* *
235971 ATACATG
65 AAAAATG
* * * ** *
235978 TATCGATACATCTAGGTAAAAAGACAAAATGTATCGATGCATTCATACATGTATTGATACATTGA
1 TATCGATACATCTAGGTAAAAAGACAAAATGTATCGATACATTCAAAAATGTATCAATACATTCA
236043 AAAATG
66 AAAATG
236049 TATCGATACATCTAGGTAAAAA
1 TATCGATACATCTAGGTAAAAA
236071 TAAGAGGAGT
Statistics
Matches: 83, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
71 81 0.98
72 2 0.02
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.29
Consensus pattern (71 bp):
TATCGATACATCTAGGTAAAAAGACAAAATGTATCGATACATTCAAAAATGTATCAATACATTCA
AAAATG
Found at i:236031 original size:20 final size:20
Alignment explanation
Indices: 236003--236059 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
235993 GTAAAAAGAC
*
236003 AAAATGTATCGATGCATTCA
1 AAAATGTATCGATACATTCA
* * * *
236023 TACATGTATTGATACATTGA
1 AAAATGTATCGATACATTCA
236043 AAAATGTATCGATACAT
1 AAAATGTATCGATACAT
236060 CTAGGTAAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.33
Consensus pattern (20 bp):
AAAATGTATCGATACATTCA
Found at i:236526 original size:28 final size:28
Alignment explanation
Indices: 236449--237063 Score: 725
Period size: 28 Copynumber: 21.6 Consensus size: 28
236439 AGTGTCATTA
* *
236449 ACTTGTGTAGGCTTTGAAAAGAGTTGCCACCG
1 ACTTGTG--GGCTTTG-AAAG-GGTGCCACTG
*
236481 ACTTGTGTTGGCTTTGAAAGGGTGCCACCG
1 ACTTGTG--GGCTTTGAAAGGGTGCCACTG
*
236511 ACTTGTTGGCTTTGAAAGGGTATGCCACTG
1 ACTTGTGGGCTTTGAAAGGG--TGCCACTG
*
236541 ACTTCTGGGCTTTGAAAGGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* * *
236569 ACTTGTGGGCTTTGAAACGGTGCCATTA
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
*
236597 ACTTGTGGGCTTTGAAAGGGTACCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* *
236625 ACTTATGGGCTTTGAAAGTGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* *
236653 ACTTGTAGGCTTTGAAAGGGTGCCATTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
*
236681 ACTTATGGGCTTTGGAAA-GGTGCCACTAG
1 ACTTGTGGGCTTT-GAAAGGGTGCCACT-G
** *
236710 TTTGTGTGGGCTTTGAAAGGGTATGCCACTA
1 ACT-TGTGGGCTTTGAAAGGG--TGCCACTG
236741 ACTTGTGGGCTTTGAAAGGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
*
236769 ACTTGTGGGCTTTGAAAAGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* * * *
236797 AC-T-TGGTCTTTTG-AAGAGATGGCACTA
1 ACTTGTGGGC-TTTGAAAG-GGTGCCACTG
* *
236824 ACTTGTGGGCTTTGAAAGGATACCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* * *
236852 ATTTGTGGGCTTCGAAAGGATGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* *
236880 ACTTGTGGGCTTTGAAAGGATGCCACTA
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* *
236908 ACTTATGGGCTTTGAAAGGATGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* *
236936 ACTTGTGGGCTTTGAAAGGATGCCACTA
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
236964 ACTTGTGGGCTTTGAAAGGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
* * * *
236992 ACTTGTGGGCTTTGAAAAGATGCTATTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
*
237020 ACTTGTGGGCTTTGAAAGGATGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTG
237048 ACTTGTGGGCTTTGAA
1 ACTTGTGGGCTTTGAA
237064 GAGATGAATG
Statistics
Matches: 510, Mismatches: 60, Indels: 30
0.85 0.10 0.05
Matches are distributed among these distances:
26 6 0.01
27 14 0.03
28 378 0.74
29 17 0.03
30 68 0.13
31 5 0.01
32 22 0.04
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (28 bp):
ACTTGTGGGCTTTGAAAGGGTGCCACTG
Found at i:252305 original size:20 final size:20
Alignment explanation
Indices: 252280--252317 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
252270 GTAAAAAGAC
*
252280 AGAATGTATCGATACATTAA
1 AGAATGTATCAATACATTAA
252300 AGAATGTATCAATACATT
1 AGAATGTATCAATACATT
252318 CATACATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.32
Consensus pattern (20 bp):
AGAATGTATCAATACATTAA
Found at i:252348 original size:71 final size:71
Alignment explanation
Indices: 252255--252418 Score: 213
Period size: 71 Copynumber: 2.3 Consensus size: 71
252245 TTATTTAATA
* *
252255 TATCAATACATCTGGGTAAAAAGACAGAATGTATCGATACATT-AAAGAATGTATCAATACATTC
1 TATCGATACATCTGGGTAAAAAGACAAAATGTATCGATACATTCAAA-AATGTATCAATACATTC
* * *
252319 ATACATT
65 AAAAATG
* * * * *
252326 TATCGATACATCTGGGTAAAAAGACAAAATGTATCGATGCATTCATACATGTATCGATACATTGA
1 TATCGATACATCTGGGTAAAAAGACAAAATGTATCGATACATTCAAAAATGTATCAATACATTCA
252391 AAAATG
66 AAAATG
*
252397 TATCGATACATCTAGGTAAAAA
1 TATCGATACATCTGGGTAAAAA
252419 TGTGACTTTT
Statistics
Matches: 81, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
71 79 0.98
72 2 0.02
ACGTcount: A:0.43, C:0.14, G:0.15, T:0.29
Consensus pattern (71 bp):
TATCGATACATCTGGGTAAAAAGACAAAATGTATCGATACATTCAAAAATGTATCAATACATTCA
AAAATG
Found at i:252379 original size:20 final size:20
Alignment explanation
Indices: 252351--252407 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
252341 GTAAAAAGAC
*
252351 AAAATGTATCGATGCATTCA
1 AAAATGTATCGATACATTCA
* * *
252371 TACATGTATCGATACATTGA
1 AAAATGTATCGATACATTCA
252391 AAAATGTATCGATACAT
1 AAAATGTATCGATACAT
252408 CTAGGTAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (20 bp):
AAAATGTATCGATACATTCA
Found at i:255386 original size:13 final size:13
Alignment explanation
Indices: 255368--255392 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
255358 TACTAAGAAC
255368 ATGTATCGATACA
1 ATGTATCGATACA
255381 ATGTATCGATAC
1 ATGTATCGATAC
255393 TAAGCAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:255391 original size:32 final size:33
Alignment explanation
Indices: 255350--255413 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
255340 CAATTAAGTG
*
255350 TGTATCGATACTAAG-AACATGTATCGATACAA
1 TGTATCGATACTAAGCAACATGTATCAATACAA
*
255382 TGTATCGATACTAAGCAATATGTATCAATACA
1 TGTATCGATACTAAGCAACATGTATCAATACA
255414 TTTGGGTGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.30
Consensus pattern (33 bp):
TGTATCGATACTAAGCAACATGTATCAATACAA
Found at i:258068 original size:12 final size:13
Alignment explanation
Indices: 258047--258081 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
258037 TAGTGCCCAT
258047 GTATCGATACAA-
1 GTATCGATACAAC
*
258059 GTATCAATACAAC
1 GTATCGATACAAC
258072 GTATCGATAC
1 GTATCGATAC
258082 TAAGAACACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.26
Consensus pattern (13 bp):
GTATCGATACAAC
Found at i:267271 original size:28 final size:28
Alignment explanation
Indices: 267238--267694 Score: 374
Period size: 28 Copynumber: 16.3 Consensus size: 28
267228 CTTTGAGTAG
*
267238 GGTGCCACCAACTTGTGGGCTTTTAAAA
1 GGTGCCACTAACTTGTGGGCTTTTAAAA
* *
267266 GGTGCCACTCACTTGTGGGCTTTCAAAA
1 GGTGCCACTAACTTGTGGGCTTTTAAAA
* *
267294 GGTGCCACTAACTTGTGGAC-TTTGAAA
1 GGTGCCACTAACTTGTGGGCTTTTAAAA
* * ** * *
267321 GGATACCACTGACTTGTAAGCTTTGAAAG
1 GG-TGCCACTAACTTGTGGGCTTTTAAAA
* *
267350 GGTGCCACTGACTTATGGGC-TTTAAAA
1 GGTGCCACTAACTTGTGGGCTTTTAAAA
* * **
267377 GGATACCACTGACTTGTGGGCTTGGAAAA
1 GG-TGCCACTAACTTGTGGGCTTTTAAAA
* * *
267406 GGTGCCACTAATTTATGGGCTTGTAAAA
1 GGTGCCACTAACTTGTGGGCTTTTAAAA
* **
267434 GGATGCCACTGACTTGTGGGCTTCGAAAA
1 GG-TGCCACTAACTTGTGGGCTTTTAAAA
* * *
267463 GGTGCCACAAATTTGTGGGCTTTGAAAA
1 GGTGCCACTAACTTGTGGGCTTTTAAAA
* * *
267491 GATGCCACTAATTTATGGGCTTTTGAAAA
1 GGTGCCACTAACTTGTGGGCTTTT-AAAA
* *
267520 GGTGCCACTGA-TT-TGCGGATTTTAAAA
1 GGTGCCACTAACTTGTG-GGCTTTTAAAA
* * *
267547 GGATGCCACTAACTTGTGGACTTTGAAAG
1 GG-TGCCACTAACTTGTGGGCTTTTAAAA
* *
267576 GGTGCCA-TGGACTTGTGGGC-TTTGAAA
1 GGTGCCACT-AACTTGTGGGCTTTTAAAA
* *
267603 GGATGCCACTGACTTGTGGGCTTTGAAAA
1 GG-TGCCACTAACTTGTGGGCTTTTAAAA
* * **
267632 GGTGCCACTAACTTATGGGATTTGGAAA
1 GGTGCCACTAACTTGTGGGCTTTTAAAA
*
267660 GGTGCCAC-AGACTTGTGCGC--TTAAAA
1 GGTGCCACTA-ACTTGTGGGCTTTTAAAA
267686 GGATGCCAC
1 GG-TGCCAC
267695 GGAGTTATGG
Statistics
Matches: 346, Mismatches: 67, Indels: 33
0.78 0.15 0.07
Matches are distributed among these distances:
26 6 0.02
27 36 0.10
28 234 0.68
29 68 0.20
30 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (28 bp):
GGTGCCACTAACTTGTGGGCTTTTAAAA
Found at i:267299 original size:56 final size:57
Alignment explanation
Indices: 267238--267694 Score: 477
Period size: 56 Copynumber: 8.1 Consensus size: 57
267228 CTTTGAGTAG
* * *
267238 GGTGCCACCAACTTGTGGGCTTTTAAAAGG-TGCCACTCACTTGTGGGCTTTCAAAA
1 GGTGCCACTAACTTGTGGGCTTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAA
* * * ** *
267294 GGTGCCACTAACTTGTGGAC-TTTGAAAGGATACCACTGACTTGTAAGCTTTGAAAG
1 GGTGCCACTAACTTGTGGGCTTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAA
* * * *
267350 GGTGCCACTGACTTATGGGC-TTTAAAAGGATACCACTGACTTGTGGGCTTGGAAAA
1 GGTGCCACTAACTTGTGGGCTTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAA
* * * *
267406 GGTGCCACTAATTTATGGGCTTGTAAAAGGATGCCACTGACTTGTGGGCTTCGAAAA
1 GGTGCCACTAACTTGTGGGCTTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAA
* * * * * *
267463 GGTGCCACAAATTTGTGGGCTTTGAAAA-GATGCCACTAATTTATGGGCTTTTGAAAA
1 GGTGCCACTAACTTGTGGGCTTTTAAAAGGATGCCACTGACTTGTGGGC-TTTGAAAA
* * * * *
267520 GGTGCCACTGA-TT-TGCGGATTTTAAAAGGATGCCACTAACTTGTGGACTTTGAAAG
1 GGTGCCACTAACTTGTG-GGCTTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAA
* *
267576 GGTGCCA-TGGACTTGTGGGC-TTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAA
1 GGTGCCACT-AACTTGTGGGCTTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAA
* * ** * *
267632 GGTGCCACTAACTTATGGGATTTGGAAAGG-TGCCACAGACTTGTGCGC-TT-AAAA
1 GGTGCCACTAACTTGTGGGCTTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAA
267686 GGATGCCAC
1 GG-TGCCAC
267695 GGAGTTATGG
Statistics
Matches: 341, Mismatches: 49, Indels: 23
0.83 0.12 0.06
Matches are distributed among these distances:
54 6 0.02
55 19 0.06
56 211 0.62
57 103 0.30
58 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (57 bp):
GGTGCCACTAACTTGTGGGCTTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAA
Found at i:267484 original size:113 final size:112
Alignment explanation
Indices: 267238--267694 Score: 489
Period size: 113 Copynumber: 4.1 Consensus size: 112
267228 CTTTGAGTAG
* * *
267238 GGTGCCACCAACTTGTGGGCTTTTAAAAGG-TGCCACTCACTTGTGGGCTTTCAAAAGGTGCCAC
1 GGTGCCACAAACTTGTGGGC-TTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGTGCCAC
* * * ** *
267302 TAACTTGT-GGACTTTGAAAGGATACCACTGACTTGTAAGCTTTGAAAG
65 TAACTTATGGGA-TTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAA
** * * *
267350 GGTGCCACTGACTTATGGGCTTTAAAAGGATACCACTGACTTGTGGGCTTGGAAAAGGTGCCACT
1 GGTGCCACAAACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACT
* * *
267415 AATTTATGGGCTTGTAAAAGGATGCCACTGACTTGTGGGCTTCGAAAA
66 AACTTATGGGATT-TAAAAGGATGCCACTGACTTGTGGGCTTTGAAAA
* * * *
267463 GGTGCCACAAATTTGTGGGCTTTGAAAA-GATGCCACTAATTTATGGGCTTTTGAAAAGGTGCCA
1 GGTGCCACAAACTTGTGGGCTTT-AAAAGGATGCCACTGACTTGTGGGC-TTTGAAAAGGTGCCA
* * * *
267527 CTGA-TT-TGCGGATTTTAAAAGGATGCCACTAACTTGTGGACTTTGAAAG
64 CTAACTTATG-GGA-TTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAA
*** *
267576 GGTGCCATGGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACT
1 GGTGCCACAAACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACT
* * *
267641 AACTTATGGGATTTGGAAAGG-TGCCACAGACTTGTGCGC-TT-AAAA
66 AACTTATGGGATTT-AAAAGGATGCCACTGACTTGTGGGCTTTGAAAA
267686 GGATGCCAC
1 GG-TGCCAC
267695 GGAGTTATGG
Statistics
Matches: 286, Mismatches: 47, Indels: 25
0.80 0.13 0.07
Matches are distributed among these distances:
110 5 0.02
111 16 0.06
112 95 0.33
113 145 0.51
114 25 0.09
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (112 bp):
GGTGCCACAAACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACT
AACTTATGGGATTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAA
Found at i:267713 original size:27 final size:27
Alignment explanation
Indices: 267660--268499 Score: 840
Period size: 27 Copynumber: 30.8 Consensus size: 27
267650 GATTTGGAAA
* *
267660 GGTGCCACAGACTTGTGCG-CTTAAAAG
1 GGTGCCACGGAGTTGTG-GACTTAAAAG
* * *
267687 GATGCCACGGAGTTATGGACTTGAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
* ** * * *
267714 GATGCCATAGAGTTATGGGCTTGAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
* ** ** *
267741 GATGCCACAAAGTCATGGACTTGAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
* *
267768 GATGCCACGAAGTTGTGGACTTAAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
* *
267795 GATGCCACGGAGTTGTAGACTTTAAAAG
1 GGTGCCACGGAGTTGTGGAC-TTAAAAG
* ** *
267823 GATGTAACGGAGTTGTAGACTTTAAAAG
1 GGTGCCACGGAGTTGTGGAC-TTAAAAG
** * **
267851 AATGCGACGGAGTTGTGGACTCGAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
* *
267878 GATGCCACAGAGTTGTGGACTTAAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
*
267905 GATGCCACGGAGTTGTGGACTTTAAAAG
1 GGTGCCACGGAGTTGTGGAC-TTAAAAG
*
267933 GGTGCCACGGAGTTGTGGATTTAAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
*
267960 GATGCCACGGAGTTGTGGACTTAAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
* * * *
267987 GATGCCACAGAGTTGTGCACTTTAAAGG
1 GGTGCCACGGAGTTGTGGAC-TTAAAAG
***
268015 GGTGCCATAAAGTTGTGGACTTAAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
** *
268042 GGTGCCATAGAGTAGTGGACTTTAAAAG
1 GGTGCCACGGAGTTGTGGAC-TTAAAAG
* *
268070 GGTGCCACCGAGTTGTAGACTTAAAAGG
1 GGTGCCACGGAGTTGTGGACTTAAAA-G
* **
268098 GAAAGTGCCATGGAGTTGTGGACTTTGAAG
1 G---GTGCCACGGAGTTGTGGACTTAAAAG
* *
268128 GG-GCCATGGAGTTGTGGACTTAAATG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
*
268154 GGTGCCACGGAGTTATGGACTTAAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
* * *
268181 GGTGCCATGGAGTTATGGACTTAAATG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
* ** * *
268208 GGTACTGCGGAGTTGTAGACTTAAATG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
*
268235 GGTGCCACAGAGTTGTGGACTTAAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
* *
268262 GGTGCCACGGAATTGTGGACTTAAATG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
*
268289 GGTGCCAC-GATGTTGTGGACTTAAATG
1 GGTGCCACGGA-GTTGTGGACTTAAAAG
* *
268316 GGTGCCACGGAGTTGTGAACTTAAATG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
* * *
268343 GGTGCCACAGAGTTATGGACTTAAATG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
* *
268370 GGTGCCACGAAGTTGTGGACTTAAAAA
1 GGTGCCACGGAGTTGTGGACTTAAAAG
* * * *
268397 GGTGCCATGAAGTTGTAGACTTAAATG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
*
268424 GGTGCCACGGAGTTGTGGACTTAAATG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
*
268451 GGTGCCACGGAGTTGTGGACTTAAATG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
**
268478 GGTGCCACAAAGTTGTGGACTT
1 GGTGCCACGGAGTTGTGGACTT
268500 TGAAAAGAAA
Statistics
Matches: 704, Mismatches: 97, Indels: 24
0.85 0.12 0.03
Matches are distributed among these distances:
26 26 0.04
27 533 0.76
28 123 0.17
30 2 0.00
31 20 0.03
ACGTcount: A:0.29, C:0.14, G:0.32, T:0.25
Consensus pattern (27 bp):
GGTGCCACGGAGTTGTGGACTTAAAAG
Found at i:267730 original size:82 final size:82
Alignment explanation
Indices: 267250--268494 Score: 646
Period size: 81 Copynumber: 15.1 Consensus size: 82
267240 TGCCACCAAC
* ** * * *
267250 TTGTGGGCTTTTAAAAGG-TGCCACTCACTTGTGGGCTTTCAAAAGG-TGCCACTA-ACTTGTGG
1 TTGTGCGC-TTTAAAAGGATGCCACGGAGTTGTGGAC-TT-AAAAGGATGCCAC-AGAGTTGTGG
* * * *
267312 ACTTTGAAAGGATACCACTGAC
62 AC-TTAAAAGGATGCCACAGAG
** * * * * * * * * * *
267334 TTGTAAGCTTTGAAAGGGTGCCACTGACTTATGGGCTTTAAAAGGATACCACTGACTTGTGGGCT
1 TTGTGCGCTTTAAAAGGATGCCACGGAGTTGTGGAC-TTAAAAGGATGCCACAGAGTTGTGGACT
*
267399 TGGAAAAGG-TGCCACTA-AT
65 T--AAAAGGATGCCAC-AGAG
* * * * * * * *
267418 TTATGGGCTTGTAAAAGGATGCCACTGACTTGTGGGCTTCGAAAAGG-TGCCACAAATTTGTGGG
1 TTGTGCGCTT-TAAAAGGATGCCACGGAGTTGTGGACTT--AAAAGGATGCCACAGAGTTGTGGA
*
267482 CTTTGAAAA-GATGCCACTA-AT
63 C-TT-AAAAGGATGCCAC-AGAG
* * * * * * *
267503 TTATGGGCTTTTGAAAAGG-TGCCACTGATTTGCGGATTTTAAAAGGATGCCACTA-ACTTGTGG
1 TTGTGCGC-TTT-AAAAGGATGCCACGGAGTTGTGGA-CTTAAAAGGATGCCAC-AGAGTTGTGG
* * ** *
267566 ACTTTGAAAGGGTGCCATGGAC
62 AC-TTAAAAGGATGCCACAGAG
* * * * * * *
267588 TTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGG-TGCCACTA-ACTTATGGG
1 TTGTGCGCTTTAAAAGGATGCCACGGAGTTGTGGAC-TT-AAAAGGATGCCAC-AGAGTTGT-GG
* * *
267651 ATTTGGAAAGG-TGCCACAGAC
62 ACTT-AAAAGGATGCCACAGAG
* * * * *
267672 TTGTGCGC-TTAAAAGGATGCCACGGAGTTATGGACTTGAAAGGATGCCATAGAGTTATGGGCTT
1 TTGTGCGCTTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGATGCCACAGAGTTGTGGACTT
* *
267736 GAAAGGATGCCACAAAG
66 AAAAGGATGCCACAGAG
** * * * *
267753 TCATG-GAC-TTGAAAGGATGCCACGAAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTAGACT
1 TTGTGCG-CTTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGATGCCACAGAGTTGTGGAC-
** *
267816 TTAAAAGGATGTAACGGAG
64 TTAAAAGGATGCCACAGAG
* * * **
267835 TTGTAG-ACTTTAAAAGAATGCGACGGAGTTGTGGACTCGAAAGGATGCCACAGAGTTGTGGACT
1 TTGT-GCGCTTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGATGCCACAGAGTTGTGGACT
*
267899 TAAAAGGATGCCACGGAG
65 TAAAAGGATGCCACAGAG
* * *
267917 TTGTG-GACTTTAAAAGGGTGCCACGGAGTTGTGGATTTAAAAGGATGCCACGGAGTTGTGGACT
1 TTGTGCG-CTTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGATGCCACAGAGTTGTGGACT
267981 TAAAAGGATGCCACAGAG
65 TAAAAGGATGCCACAGAG
* * * *** * * *
267999 TTGTGCACTTTAAAGGGGTGCCATAAAGTTGTGGACTTAAAAGGGTGCCATAGAGTAGTGGACTT
1 TTGTGCGCTTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGATGCCACAGAGTTGTGGAC-T
* *
268064 TAAAAGGGTGCCACCGAG
65 TAAAAGGATGCCACAGAG
* * ** * **
268082 TTGTAG-AC-TTAAAAGGGAAAGTGCCATGGAGTTGTGGACTTTGAAGG-GGCCATGGAGTTGTG
1 TTGT-GCGCTTTAAAA-GG--A-TGCCACGGAGTTGTGGACTTAAAAGGATGCCACAGAGTTGTG
* * *
268144 GACTTAAATGGGTGCCACGGAG
61 GACTTAAAAGGATGCCACAGAG
* * * * * * * ** * *
268166 TTATG-GAC-TTAAAAGGGTGCCATGGAGTTATGGACTTAAATGGGTACTGCGGAGTTGTAGACT
1 TTGTGCG-CTTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGATGCCACAGAGTTGTGGACT
* *
268229 TAAATGGGTGCCACAGAG
65 TAAAAGGATGCCACAGAG
* * * *
268247 TTGTG-GAC-TTAAAAGGGTGCCACGGAATTGTGGACTTAAATGGGTGCCAC-GATGTTGTGGAC
1 TTGTGCG-CTTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGATGCCACAGA-GTTGTGGAC
* * *
268309 TTAAATGGGTGCCACGGAG
64 TTAAAAGGATGCCACAGAG
** * * * * * *
268328 TTGTGAAC-TTAAATGGGTGCCACAGAGTTATGGACTTAAATGGGTGCCAC-GAAGTTGTGGACT
1 TTGTGCGCTTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGATGCCACAG-AGTTGTGGACT
*
268391 TAAAAAGG-TGCCA-TGAAG
65 T-AAAAGGATGCCACAG-AG
* * * * * *
268409 TTGTAG-AC-TTAAATGGGTGCCACGGAGTTGTGGACTTAAATGGGTGCCACGGAGTTGTGGACT
1 TTGT-GCGCTTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGATGCCACAGAGTTGTGGACT
* * *
268472 TAAATGGGTGCCACAAAG
65 TAAAAGGATGCCACAGAG
268490 TTGTG
1 TTGTG
268495 GACTTTGAAA
Statistics
Matches: 960, Mismatches: 152, Indels: 102
0.79 0.13 0.08
Matches are distributed among these distances:
80 38 0.04
81 299 0.31
82 182 0.19
83 118 0.12
84 141 0.15
85 141 0.15
86 41 0.04
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (82 bp):
TTGTGCGCTTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGATGCCACAGAGTTGTGGACTT
AAAAGGATGCCACAGAG
Found at i:274016 original size:166 final size:165
Alignment explanation
Indices: 273829--274149 Score: 430
Period size: 166 Copynumber: 1.9 Consensus size: 165
273819 TTTTTTGGGA
* *
273829 GGATTTTCCTTGGTTCAAAATTATAATATTCATCAAATATCATCATTTAATT-ACT-GTTAAATT
1 GGATTTTCCTGGGTTCAAAATTATAATATTCATAAAATATCATCATTTAATTCA-TAG-TAAATT
* * **
273892 AATTTTGAAAAAATCATTTATTTTCTTGAGTTTTTCATTTTTTTCCATAAAAATCCTTAATTTTC
64 AATTTTGAAAAAATCATTTACTTTCATGAGTTTTTCA-TTTTTTCCATAAAAATCCTTAATTCCC
*
273957 GAAAAAAAGAGTTTTCCACTCCGTAAATGTTTCGGGGG
128 GAAAAAAAGAGTTTTCCACTCCATAAATGTTTCGGGGG
* * * *
273995 GGATTTTTCTGGGTTCAAAATTTTTATATTCATAAAATATCATCATTTAATTCATAGTAAATTAG
1 GGATTTTCCTGGGTTCAAAATTATAATATTCATAAAATATCATCATTTAATTCATAGTAAATTAA
** * * * *
274060 TTTTGAAAATTTCATTTACTTTCATGAGTTTTTCATTTTTTCCTTAAAATTTCTTTATTCCCGAA
66 TTTTGAAAAAATCATTTACTTTCATGAGTTTTTCATTTTTTCCATAAAAATCCTTAATTCCCGAA
* *
274125 AAATAGAGTTTTCTACTCCATAAAT
131 AAAAAGAGTTTTCCACTCCATAAAT
274150 AATTTCAAGG
Statistics
Matches: 134, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
165 46 0.34
166 86 0.64
167 2 0.01
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.45
Consensus pattern (165 bp):
GGATTTTCCTGGGTTCAAAATTATAATATTCATAAAATATCATCATTTAATTCATAGTAAATTAA
TTTTGAAAAAATCATTTACTTTCATGAGTTTTTCATTTTTTCCATAAAAATCCTTAATTCCCGAA
AAAAAGAGTTTTCCACTCCATAAATGTTTCGGGGG
Found at i:274265 original size:165 final size:165
Alignment explanation
Indices: 273841--274265 Score: 414
Period size: 166 Copynumber: 2.6 Consensus size: 165
273831 ATTTTCCTTG
* * * * * * *
273841 GTTCAAAA-TTATAATATTCATCAAATATCATCATTTAATT-ACTGTTAAATTAATTTTGAAAAA
1 GTTCAAAATTTTTAA-ATTCATAAAATATCATCATTAAATTCACAG-TAAATCAGTTTTGAAAAT
* * * * * * * **
273904 ATCATTTATTTTCTTGAGTTTTTCATTTTTTTCCATAAAAATCCTTAATTTTCGAAAAAAAGAGT
64 TTCATTTACTTTCATGAGTTTTTCA-TTTTTTCCTTAAAATTTCTTTATTCCCGAAAAAAAGAGT
* * ** **
273969 TTTCCACTCCGTAAATGTTTCGGGGGGGATTTTTCTGG
128 TTTCCACTCCATAAATATTTCGAAGGGGATTTTTCTCA
* * * *
274007 GTTCAAAATTTTTATATTCATAAAATATCATCATTTAATTCATAGTAAATTAGTTTTGAAAATTT
1 GTTCAAAATTTTTAAATTCATAAAATATCATCATTAAATTCACAGTAAATCAGTTTTGAAAATTT
*
274072 CATTTACTTTCATGAGTTTTTCATTTTTTCCTTAAAATTTCTTTATTCCCGAAAAATAGAGTTTT
66 CATTTACTTTCATGAGTTTTTCATTTTTTCCTTAAAATTTCTTTATTCCCGAAAAAAAGAGTTTT
*
274137 CTACTCCATAAATAATTTC-AAGGGGATTTTTCTCA
131 CCACTCCATAAAT-ATTTCGAAGGGGATTTTTCTCA
* ** ** *
274172 GTTTAAAATTTTTAAAATTCATCTAATATTGTCATTAAATTCACATTAAATCAGTTTTGCAAAA-
1 GTTCAAAATTTTT-AAATTCATAAAATATCATCATTAAATTCACAGTAAATCAGTTTTG-AAAAT
*
274236 TTCAATTTA-TTAT-ATGAG-TTTTGATTTTTT
64 TTC-ATTTACTT-TCATGAGTTTTTCATTTTTT
274266 TGTTTTTATT
Statistics
Matches: 217, Mismatches: 35, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
165 81 0.37
166 120 0.55
167 16 0.07
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.46
Consensus pattern (165 bp):
GTTCAAAATTTTTAAATTCATAAAATATCATCATTAAATTCACAGTAAATCAGTTTTGAAAATTT
CATTTACTTTCATGAGTTTTTCATTTTTTCCTTAAAATTTCTTTATTCCCGAAAAAAAGAGTTTT
CCACTCCATAAATATTTCGAAGGGGATTTTTCTCA
Found at i:274978 original size:21 final size:21
Alignment explanation
Indices: 274946--274989 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
274936 ATTTTATGAA
274946 TTTTGATGATTT-GCTTGATT
1 TTTTGATGATTTAGCTTGATT
* *
274966 TTTTTATGTATTTAGGTTGATT
1 TTTTGATG-ATTTAGCTTGATT
274988 TT
1 TT
274990 CATTATGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 4 0.20
22 9 0.45
ACGTcount: A:0.16, C:0.02, G:0.18, T:0.64
Consensus pattern (21 bp):
TTTTGATGATTTAGCTTGATT
Found at i:275065 original size:21 final size:21
Alignment explanation
Indices: 275039--275078 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
275029 GTGATATTTA
275039 TCATGTCATATATT-TGTTGAT
1 TCATGTCATAT-TTATGTTGAT
*
275060 TCATGTTATATTTATGTTG
1 TCATGTCATATTTATGTTG
275079 TTTTATGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.23, C:0.07, G:0.15, T:0.55
Consensus pattern (21 bp):
TCATGTCATATTTATGTTGAT
Found at i:276318 original size:156 final size:154
Alignment explanation
Indices: 276010--276754 Score: 793
Period size: 156 Copynumber: 4.8 Consensus size: 154
276000 AAGTATATCT
* * *** *
276010 TAAGAGCATTTTCATAATTTTTTCAAAACCAAGTCCTAGGTTGTCACC-GAG-TCTGTTTTTATG
1 TAAGGGCATTTTCGTAATTTTTT-AAAATTGAGTCCTAGGTTGTCACCAG-GTTC-GCTTTTATG
* * * *
276073 C-AGAAGTGGGTATTTAGGATAGATTCATCCCATCTATAATCC-TTTTATGTCTTTTAGGGGTAT
63 CTA-AAGTGGGTATTTAGGATAGGTTCATCCCATCTATAATCCTTTTTAAGTCCTTTAAGGGTAT
* *
276136 CGAGCACTTTTAAGTCAAAGGTATCCCC
127 CGAGCACTTCTAAGTCAAAGGCATCCCC
* *
276164 TAAGGGCATTTTTGTAATTTTTTTAAAATTGAGTCCTAGGTTGTCACCAAGTTCGCTTTTATGCT
1 TAAGGGCATTTTCGTAA-TTTTTTAAAATTGAGTCCTAGGTTGTCACCAGGTTCGCTTTTATGCT
* * * *
276229 AAATATGGGTATTTAGGATAGGTTTATCCAATCTATAATCATTTTTAAGTCCTTTAAGGGTATCG
65 AAA-GTGGGTATTTAGGATAGGTTCATCCCATCTATAATCCTTTTTAAGTCCTTTAAGGGTATCG
*
276294 AGCACTTCTAAGTCAAAGGCATCCCT
129 AGCACTTCTAAGTCAAAGGCATCCCC
* * * * * * *
276320 TAGAGGG-ATTTTTGCAATTTTTTAAAGTCGAGTCCTAGGTTATCATCAGGTTCGTTTTTATGCT
1 TA-AGGGCATTTTCGTAATTTTTTAAAATTGAGTCCTAGGTTGTCACCAGGTTCGCTTTTATGCT
* * * * *
276384 GAAGGTGGGTATATAGGATAGGCTCATCCCATCTATAATCCCTTTTAAGTCCTTTAGGGGTATC-
65 -AAAGTGGGTATTTAGGATAGGTTCATCCCATCTATAATCCTTTTTAAGTCCTTTAAGGGTATCG
* ** * *
276448 AGGAAACTTCTAAGTTGAAGGCATCTCT
129 A-G-CACTTCTAAGTCAAAGGCATCCCC
* * * *
276476 TAAGGGCATTTTCGTAATTTTATAGAATTGAGTCTTAGGTTGTCACTAGGTTCGCTTTTATGCTA
1 TAAGGGCATTTTCGTAATTTTTTAAAATTGAGTCCTAGGTTGTCACCAGGTTCGCTTTTATGCTA
* * * * *
276541 AAGATGGCTATTTAGGATAGGTTCATCTCATCTATAATCTTTTTTAAGTCCTTTTAGGGTATCAA
66 AAG-TGGGTATTTAGGATAGGTTCATCCCATCTATAATCCTTTTTAAGTCCTTTAAGGGTATCGA
* *
276606 GCACTTCTAAGTCGAAA-GTATCAAACC
130 GCACTTCTAAGTC-AAAGGCATC--CCC
* * * * *
276633 TAAGGGTACTTTTCATAATTTTCTCAAAATTGAGTCCTAGGTTGTCACCAGGTCCTCTTTTATGT
1 TAAGGGCA-TTTTCGTAATTTT-TTAAAATTGAGTCCTAGGTTGTCACCAGGTTCGCTTTTATG-
* * *
276698 CGAAAGTGGATATTTAGGATAGGTTCATCCCATCTATAATCCTTTTTATGTCCTTTA
63 CTAAAGTGGGTATTTAGGATAGGTTCATCCCATCTATAATCCTTTTTAAGTCCTTTA
276755 TGATCCCTGG
Statistics
Matches: 492, Mismatches: 80, Indels: 33
0.81 0.13 0.05
Matches are distributed among these distances:
154 48 0.10
155 156 0.32
156 178 0.36
157 13 0.03
158 12 0.02
159 80 0.16
160 5 0.01
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (154 bp):
TAAGGGCATTTTCGTAATTTTTTAAAATTGAGTCCTAGGTTGTCACCAGGTTCGCTTTTATGCTA
AAGTGGGTATTTAGGATAGGTTCATCCCATCTATAATCCTTTTTAAGTCCTTTAAGGGTATCGAG
CACTTCTAAGTCAAAGGCATCCCC
Found at i:276587 original size:311 final size:310
Alignment explanation
Indices: 276018--276754 Score: 884
Period size: 311 Copynumber: 2.4 Consensus size: 310
276008 CTTAAGAGCA
* * * * *
276018 TTTTCATAATTTTTTCAAAACCAAGTCCTAGGTTGTCACC-GAGTCTGTTTTTATGCAGAAGTGG
1 TTTTCA-AATTTTCTCAAAATCGAGTCCTAGGTTATCACCAG-GTC-GTTTTTATGCTGAAGTGG
* * * *
276082 GTATTTAGGATAGATTCATCCCATCTATAAT-CCTTTTATGTCTTTTAGGGGTATCGAGCACTTT
63 GTATTTAGGATAGGTTCATCCCATCTATAATCCCTTTTATGTCCTTTAGGGGTATCGAGAACTTC
* * *
276146 TAAGTCAAAGGTATCCCCTAAGGGCATTTTTGTAATTTTTTTAAAATTGAGTCCTAGGTTGTCAC
128 TAAGTCAAAGGCATCCCCTAAGGGCATTTTCGTAATTTTTATAAAATTGAGTCCTAGGTTGTCAC
* * *
276211 CAAGTTCGCTTTTATGCTAAATATGGGTATTTAGGATAGGTTTATCCAATCTATAATCATTTTTA
193 CAAGTTCGCTTTTATGCTAAAGATGGCTATTTAGGATAGGTTCATCCAATCTATAATCATTTTTA
* *
276276 AGTCCTTTAAGGGTATCGAGCACTTCTAAGTC-AAAGGCATC-CCTTAGAGGG-AT
258 AGTCCTTTAAGGGTATCAAGCACTTCTAAGTCGAAA-GCATCACC-TA-AGGGTAC
* * *
276329 TTTTGC-AATTTT-TTAAAGTCGAGTCCTAGGTTATCATCAGGTTCGTTTTTATGCTGAAGGTGG
1 TTTT-CAAATTTTCTCAAAATCGAGTCCTAGGTTATCACCAGG-TCGTTTTTATGCTGAA-GTGG
* * *
276392 GTATATAGGATAGGCTCATCCCATCTATAATCCCTTTTAAGTCCTTTAGGGGTATC-AGGAAACT
63 GTATTTAGGATAGGTTCATCCCATCTATAATCCCTTTTATGTCCTTTAGGGGTATCGA-G-AACT
** * * * *
276456 TCTAAGTTGAAGGCATCTCTTAAGGGCATTTTCGTAA-TTTTATAGAATTGAGTCTTAGGTTGTC
126 TCTAAGTCAAAGGCATCCCCTAAGGGCATTTTCGTAATTTTTATAAAATTGAGTCCTAGGTTGTC
* * *
276520 ACTAGGTTCGCTTTTATGCTAAAGATGGCTATTTAGGATAGGTTCATCTC-ATCTATAATCTTTT
191 ACCAAGTTCGCTTTTATGCTAAAGATGGCTATTTAGGATAGGTTCATC-CAATCTATAATCATTT
* *
276584 TTAAGTCCTTTTAGGGTATCAAGCACTTCTAAGTCGAAAGTATCAAACCTAAGGGTAC
255 TTAAGTCCTTTAAGGGTATCAAGCACTTCTAAGTCGAAAGCATC--ACCTAAGGGTAC
* * *
276642 TTTTCATAATTTTCTCAAAATTGAGTCCTAGGTTGTCACCAGGTCCTCTTTTATG-TCGAAAGTG
1 TTTTCA-AATTTTCTCAAAATCGAGTCCTAGGTTATCACCAGGTCGT-TTTTATGCT-G-AAGTG
* *
276706 GATATTTAGGATAGGTTCATCCCATCTATAATCCTTTTTATGTCCTTTA
62 GGTATTTAGGATAGGTTCATCCCATCTATAATCCCTTTTATGTCCTTTA
276755 TGATCCCTGG
Statistics
Matches: 363, Mismatches: 44, Indels: 34
0.82 0.10 0.08
Matches are distributed among these distances:
309 34 0.09
310 42 0.12
311 144 0.40
312 43 0.12
313 7 0.02
314 12 0.03
315 79 0.22
316 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.39
Consensus pattern (310 bp):
TTTTCAAATTTTCTCAAAATCGAGTCCTAGGTTATCACCAGGTCGTTTTTATGCTGAAGTGGGTA
TTTAGGATAGGTTCATCCCATCTATAATCCCTTTTATGTCCTTTAGGGGTATCGAGAACTTCTAA
GTCAAAGGCATCCCCTAAGGGCATTTTCGTAATTTTTATAAAATTGAGTCCTAGGTTGTCACCAA
GTTCGCTTTTATGCTAAAGATGGCTATTTAGGATAGGTTCATCCAATCTATAATCATTTTTAAGT
CCTTTAAGGGTATCAAGCACTTCTAAGTCGAAAGCATCACCTAAGGGTAC
Found at i:280773 original size:12 final size:12
Alignment explanation
Indices: 280730--280766 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
280720 AAAAAGAAGG
280730 AAAAGATAAAAA
1 AAAAGATAAAAA
280742 AAAAG-TAAAAA
1 AAAAGATAAAAA
280753 AAAAGA-AAAAA
1 AAAAGATAAAAA
280764 AAA
1 AAA
280767 GAAAAAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 19 0.79
12 5 0.21
ACGTcount: A:0.86, C:0.00, G:0.08, T:0.05
Consensus pattern (12 bp):
AAAAGATAAAAA
Done.