Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold63
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2211945
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 524 characters in sequence are not A, C, G, or T
File 1 of 16
Found at i:12460 original size:7 final size:7
Alignment explanation
Indices: 12448--12924 Score: 191
Period size: 7 Copynumber: 69.4 Consensus size: 7
12438 GAGGTTTAAT
12448 GGTTTGG
1 GGTTTGG
12455 GGTTTGG
1 GGTTTGG
*
12462 GATTTGG
1 GGTTTGG
12469 GG-TTGG
1 GGTTTGG
*
12475 GG-TTAG
1 GGTTTGG
12481 GG-TTGG
1 GGTTTGG
*
12487 GGGTTGG
1 GGTTTGG
*
12494 GGGTTGG
1 GGTTTGG
12501 GG-TTGG
1 GGTTTGG
*
12507 GGTTGGG
1 GGTTTGG
12514 GGTTTGG
1 GGTTTGG
*
12521 GGTTCGG
1 GGTTTGG
*
12528 GGTTCGG
1 GGTTTGG
* *
12535 GGTTCGA
1 GGTTTGG
*
12542 GGTTCGGG
1 GGTT-TGG
*
12550 GGTTCGG
1 GGTTTGG
*
12557 GGTTCGG
1 GGTTTGG
12564 GGTTTGG
1 GGTTTGG
*
12571 GG-TTGA
1 GGTTTGG
**
12577 GG-TAAG
1 GGTTTGG
*
12583 GG--TAG
1 GGTTTGG
*
12588 GGTTTAG
1 GGTTTGG
12595 GGTTT-G
1 GGTTTGG
12601 GGTTTGG
1 GGTTTGG
*
12608 GGTTTAG
1 GGTTTGG
*
12615 GATTTGG
1 GGTTTGG
*
12622 GGTTTAG
1 GGTTTGG
12629 GGTTTGG
1 GGTTTGG
*
12636 GATTTGG
1 GGTTTGG
*
12643 GGTTGGG
1 GGTTTGG
12650 GGTTTGG
1 GGTTTGG
*
12657 GGTTCGG
1 GGTTTGG
*
12664 GG-TGGG
1 GGTTTGG
12670 GGTTTGG
1 GGTTTGG
*
12677 GGTTCGG
1 GGTTTGG
*
12684 GG-TTCG
1 GGTTTGG
*
12690 GG-TTCG
1 GGTTTGG
*
12696 GGTCTGG
1 GGTTTGG
*
12703 GGTCTGG
1 GGTTTGG
*
12710 GGTCT-G
1 GGTTTGG
*
12716 GGTCTGG
1 GGTTTGG
*
12723 GGTCTGG
1 GGTTTGG
***
12730 GGTCCAG
1 GGTTTGG
*
12737 GGTTCGG
1 GGTTTGG
*
12744 GGTTCGG
1 GGTTTGG
*
12751 GGTTCGG
1 GGTTTGG
12758 GG---GG
1 GGTTTGG
* *
12762 GGTTCGA
1 GGTTTGG
12769 GGTTTCGG
1 GGTTT-GG
*
12777 GGTTCGG
1 GGTTTGG
* *
12784 GGGTCGG
1 GGTTTGG
*
12791 GGTTTTAG
1 GG-TTTGG
*
12799 GGTTCGCG
1 GGTTTG-G
12807 GGTTTGG
1 GGTTTGG
*
12814 GGTTTTAG
1 GG-TTTGG
* *
12822 GGTTCGA
1 GGTTTGG
*
12829 GG-TTGA
1 GGTTTGG
*
12835 GGTTCGG
1 GGTTTGG
*
12842 GGTTTTTG
1 GG-TTTGG
12850 GGTTTCGG
1 GGTTT-GG
*
12858 GGTTTTAG
1 GG-TTTGG
*
12866 GGTTCGG
1 GGTTTGG
* *
12873 GATTTGC
1 GGTTTGG
12880 GG--TGCG
1 GGTTTG-G
*
12886 GGTTCGG
1 GGTTTGG
*
12893 TGGTTCGG
1 -GGTTTGG
*
12901 GGTTCGG
1 GGTTTGG
*
12908 GGTTCGG
1 GGTTTGG
*
12915 GGTTCGG
1 GGTTTGG
12922 GGT
1 GGT
12925 CGGGGGTCGG
Statistics
Matches: 377, Mismatches: 69, Indels: 48
0.76 0.14 0.10
Matches are distributed among these distances:
4 4 0.01
5 6 0.02
6 64 0.17
7 255 0.68
8 45 0.12
9 3 0.01
ACGTcount: A:0.04, C:0.08, G:0.55, T:0.34
Consensus pattern (7 bp):
GGTTTGG
Found at i:12765 original size:18 final size:19
Alignment explanation
Indices: 12742--12778 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
12732 TCCAGGGTTC
12742 GGGGTTCG-GGGTTCGGGG
1 GGGGTTCGAGGGTTCGGGG
*
12760 GGGGTTCGAGGTTTCGGGG
1 GGGGTTCGAGGGTTCGGGG
12779 TTCGGGGGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.03, C:0.11, G:0.62, T:0.24
Consensus pattern (19 bp):
GGGGTTCGAGGGTTCGGGG
Found at i:12778 original size:15 final size:14
Alignment explanation
Indices: 12649--13045 Score: 114
Period size: 14 Copynumber: 28.2 Consensus size: 14
12639 TTGGGGTTGG
12649 GGGTTT-GGGGTTC
1 GGGTTTCGGGGTTC
* * *
12662 GGG-GTGGGGGTTT
1 GGGTTTCGGGGTTC
*
12675 GGGGTTCGGGGTTC
1 GGGTTTCGGGGTTC
*
12689 GGG-TTC-GGGTCTG
1 GGGTTTCGGGGT-TC
*
12702 GGGTCT-GGGG-TC
1 GGGTTTCGGGGTTC
*
12714 TGGGTCT-GGGG-TC
1 -GGGTTTCGGGGTTC
* * *
12727 TGGGGTCCAGGGTTC
1 -GGGTTTCGGGGTTC
*
12742 GGGGTTCGGGGTTC
1 GGGTTTCGGGGTTC
*
12756 GGG---GGGGGTTC
1 GGGTTTCGGGGTTC
12767 GAGGTTTCGGGGTTC
1 G-GGTTTCGGGGTTC
** *
12782 GGGGGTCGGGGTTTTA
1 GGGTTTCGGGG--TTC
*
12798 GGG-TTCGCGGGTTTG
1 GGGTTTCG-GGG-TTC
**
12813 GGGTTTTAGGGTTC
1 GGGTTTCGGGGTTC
*
12827 GAGG-TT-GAGGTTC
1 G-GGTTTCGGGGTTC
* *
12840 GGGGTTTTTGGGTTTC
1 -GGG-TTTCGGGGTTC
**
12856 GGGGTTTTAGGGTTC
1 -GGGTTTCGGGGTTC
* *
12871 GGGATTT-GCGGTGC
1 GGG-TTTCGGGGTTC
12885 GGG-TTCGGTGGTTC
1 GGGTTTCGG-GGTTC
*
12899 GGGGTTCGGGGTTC
1 GGGTTTCGGGGTTC
*
12913 GGGGTTCGGGG-TC
1 GGGTTTCGGGGTTC
**
12926 GGGGGTCGGGGTTC
1 GGGTTTCGGGGTTC
***
12940 GGGGGGCGGGGGTTC
1 GGGTTTC-GGGGTTC
*
12955 GGGGGGTTCGGGGTTC
1 --GGGTTTCGGGGTTC
12971 GGCG-TTCGGGGGGTTC
1 GG-GTTTC--GGGGTTC
*
12987 GGGGTTCGGGGTTC
1 GGGTTTCGGGGTTC
* *
13001 GGG-GTGGGGGTTC
1 GGGTTTCGGGGTTC
*
13014 GGGGTTCGGGG-TC
1 GGGTTTCGGGGTTC
*
13027 GGGCGGTTCGGGGTTC
1 -GG-GTTTCGGGGTTC
13043 GGG
1 GGG
13046 GGGAGGGGGA
Statistics
Matches: 304, Mismatches: 43, Indels: 73
0.72 0.10 0.17
Matches are distributed among these distances:
11 8 0.03
12 10 0.03
13 68 0.22
14 110 0.36
15 63 0.21
16 40 0.13
17 5 0.02
ACGTcount: A:0.02, C:0.12, G:0.56, T:0.29
Consensus pattern (14 bp):
GGGTTTCGGGGTTC
Found at i:12782 original size:26 final size:25
Alignment explanation
Indices: 12736--13046 Score: 138
Period size: 27 Copynumber: 11.7 Consensus size: 25
12726 CTGGGGTCCA
12736 GGGTTCGGGGTTCGGGGTTCGGGGG
1 GGGTTCGGGGTTCGGGGTTCGGGGG
*
12761 GGGTTCGAGGTTTCGGGGTTCGGGGGTCG
1 GGGTTCG-GGGTTCGGGGTTC-GGGG--G
** * *
12790 GGGTTTTAGGGTTCGCGGGTTTGGGGTTTTA
1 GGG-TTCGGGGTTCG-GGGTTCGGGG----G
* *
12821 GGGTTCGAGGTT-GAGGTTCGGGGTTTTTG
1 GGGTTCGGGGTTCGGGGTTCGGGG-----G
* ** *
12850 GGTTTCGGGGTTTTAGGGTTCGGGATTTG
1 GGGTTCGGGG-TTCGGGGTTCGGG---GG
* *
12879 CGGTGCGGG-TTCGGTGGTTCGGGGTTCG
1 GGGTTCGGGGTTCGG-GGTTCGGGG---G
12907 GGGTTCGGGGTTCGGGG-TCGGGGGTCG
1 GGGTTCGGGGTTCGGGGTTC-GGGG--G
**
12934 GGGTTCGGGGGGCGGGGGTTC--GGG
1 GGGTTCGGGGTTC-GGGGTTCGGGGG
*
12958 GGGTTCGGGGTTCGGCGTTC--GGG
1 GGGTTCGGGGTTCGGGGTTCGGGGG
12981 GGGTTCGGGGTTCGGGGTTCGGGGTGG
1 GGGTTCGGGGTTCGGGGTTC-GGG-GG
13008 GGGTTCGGGGTTCGGGG-TC--GGG
1 GGGTTCGGGGTTCGGGGTTCGGGGG
*
13030 CGGTTCGGGGTTCGGGG
1 GGGTTCGGGGTTCGGGG
13047 GGAGGGGGAG
Statistics
Matches: 227, Mismatches: 33, Indels: 55
0.72 0.10 0.17
Matches are distributed among these distances:
22 18 0.08
23 29 0.13
24 12 0.05
25 7 0.03
26 17 0.07
27 42 0.19
28 34 0.15
29 41 0.18
30 15 0.07
31 12 0.05
ACGTcount: A:0.02, C:0.12, G:0.57, T:0.29
Consensus pattern (25 bp):
GGGTTCGGGGTTCGGGGTTCGGGGG
Found at i:12819 original size:23 final size:22
Alignment explanation
Indices: 12776--12827 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
12766 CGAGGTTTCG
12776 GGGTTCGGGGGTCGGGGTTTTA
1 GGGTTCGGGGGTCGGGGTTTTA
* *
12798 GGGTTCGCGGGTTTGGGGTTTTA
1 GGGTTCG-GGGGTCGGGGTTTTA
12821 GGGTTCG
1 GGGTTCG
12828 AGGTTGAGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 7 0.26
23 20 0.74
ACGTcount: A:0.04, C:0.10, G:0.52, T:0.35
Consensus pattern (22 bp):
GGGTTCGGGGGTCGGGGTTTTA
Found at i:12858 original size:16 final size:15
Alignment explanation
Indices: 12806--12873 Score: 77
Period size: 15 Copynumber: 4.6 Consensus size: 15
12796 TAGGGTTCGC
*
12806 GGGTTTGGGGTTTTA
1 GGGTTCGGGGTTTTA
* *
12821 GGGTTCGAGG-TTGA
1 GGGTTCGGGGTTTTA
*
12835 -GGTTCGGGGTTTTT
1 GGGTTCGGGGTTTTA
12849 GGGTTTCGGGGTTTTA
1 GGG-TTCGGGGTTTTA
12865 GGGTTCGGG
1 GGGTTCGGG
12874 ATTTGCGGTG
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
13 8 0.19
14 5 0.12
15 16 0.37
16 14 0.33
ACGTcount: A:0.06, C:0.06, G:0.49, T:0.40
Consensus pattern (15 bp):
GGGTTCGGGGTTTTA
Found at i:12929 original size:20 final size:20
Alignment explanation
Indices: 12467--13046 Score: 218
Period size: 20 Copynumber: 27.9 Consensus size: 20
12457 TTTGGGATTT
* * *
12467 GGGGTT-GGGGTTAGGGTTG
1 GGGGTTCGGGGTTCGGGGTC
* *
12486 GGGGTTGGGGGTT-GGGGTT
1 GGGGTTCGGGGTTCGGGGTC
* *
12505 GGGGTTGGGGGTTTGGGGTTC
1 GGGGTTCGGGGTTCGGGG-TC
*
12526 GGGGTTCGGGGTTCGAGGTTC
1 GGGGTTCGGGGTTCG-GGGTC
*
12547 GGGGGTTCGGGGTTCGGGGTTT
1 -GGGGTTCGGGGTTCGGGG-TC
* **
12569 GGGGTT-GAGG-TAAGGGT-
1 GGGGTTCGGGGTTCGGGGTC
* ** * * *
12586 AGGGTTTAGGGTTTGGGTTT
1 GGGGTTCGGGGTTCGGGGTC
** * * *
12606 GGGGTTTAGGATTTGGGGTTT
1 GGGGTTCGGGGTTCGGGG-TC
* * * * *
12627 AGGGTTTGGGATTTGGGGTTG
1 GGGGTTCGGGGTTCGGGG-TC
* *
12648 GGGGTTTGGGGTTCGGGGTG
1 GGGGTTCGGGGTTCGGGGTC
*
12668 GGGGTTTGGGGTTCGGGGTTC
1 GGGGTTCGGGGTTCGGGG-TC
12689 -GGGTTC-GGG-TCTGGGGTC
1 GGGGTTCGGGGTTC-GGGGTC
*
12707 TGGGG-TCTGGG-TCTGGGGTC
1 -GGGGTTCGGGGTTC-GGGGTC
* *
12727 TGGGGTCCAGGGTTCGGGGTTC
1 -GGGGTTCGGGGTTCGGGG-TC
12749 GGGGTTCGGGG---GGGGTTC
1 GGGGTTCGGGGTTCGGGG-TC
*
12767 GAGGTTTCGGGGTTCGGGGGTC
1 G-GGGTTCGGGGTTC-GGGGTC
** *
12789 GGGGTTTTAGGGTTCGCGGGTTT
1 GGGG-TTCGGGGTTCG-GGG-TC
** * *
12812 GGGGTTTTAGGGTTCGAGGTT
1 GGGG-TTCGGGGTTCGGGGTC
* * *
12833 GAGGTTCGGGGTTTTTGGGTTTC
1 GGGGTTCGGGG--TTCGGG-GTC
** * *
12856 GGGGTTTTAGGGTTCGGGATTT
1 GGGG-TTCGGGGTTCGGG-GTC
* *
12878 GCGGTGC-GGGTTCGGTGGTTC
1 GGGGTTCGGGGTTCGG-GG-TC
12899 GGGGTTCGGGGTTCGGGGTTC
1 GGGGTTCGGGGTTCGGGG-TC
*
12920 GGGG-TCGGGGGTCGGGGTTC
1 GGGGTTCGGGGTTCGGGG-TC
**
12940 GGGGGGCGGGGGTTCGGGGGGTTC
1 GGGGTTC-GGGGTTC--GGGG-TC
*
12964 GGGGTTCGGCGTTCGGGGGGTTC
1 GGGGTTCGGGGTTC--GGGG-TC
*
12987 GGGGTTCGGGGTTCGGGGTG
1 GGGGTTCGGGGTTCGGGGTC
13007 GGGGTTCGGGGTTCGGGGTC
1 GGGGTTCGGGGTTCGGGGTC
13027 GGGCGGTTCGGGGTTCGGGG
1 -GG-GGTTCGGGGTTCGGGG
13047 GGAGGGGGAG
Statistics
Matches: 455, Mismatches: 67, Indels: 75
0.76 0.11 0.13
Matches are distributed among these distances:
17 5 0.01
18 15 0.03
19 49 0.11
20 125 0.27
21 109 0.24
22 82 0.18
23 53 0.12
24 17 0.04
ACGTcount: A:0.03, C:0.09, G:0.57, T:0.31
Consensus pattern (20 bp):
GGGGTTCGGGGTTCGGGGTC
Found at i:12930 original size:7 final size:7
Alignment explanation
Indices: 12897--13117 Score: 96
Period size: 7 Copynumber: 31.0 Consensus size: 7
12887 GTTCGGTGGT
*
12897 TCGGGGT
1 TCGGGGG
*
12904 TCGGGGT
1 TCGGGGG
*
12911 TCGGGGT
1 TCGGGGG
12918 TC-GGGG
1 TCGGGGG
12924 TCGGGGG
1 TCGGGGG
*
12931 TCGGGGT
1 TCGGGGG
12938 TCGGGGG
1 TCGGGGG
*
12945 GCGGGGG
1 TCGGGGG
12952 TTCGGGGGG
1 -TC-GGGGG
*
12961 TTCGGGGT
1 -TCGGGGG
* *
12969 TCGGCGT
1 TCGGGGG
12976 TCGGGGGG
1 TC-GGGGG
*
12984 TTCGGGGT
1 -TCGGGGG
*
12992 TCGGGGT
1 TCGGGGG
12999 TC-GGGG
1 TCGGGGG
13005 T-GGGGG
1 TCGGGGG
*
13011 TTCGGGGT
1 -TCGGGGG
13019 TC-GGGG
1 TCGGGGG
13025 TCGGGCGG
1 TCGGG-GG
*
13033 TTCGGGGT
1 -TCGGGGG
13041 TCGGGGG
1 TCGGGGG
**
13048 GAGGGGG
1 TCGGGGG
*
13055 -AGGGGG
1 TCGGGGG
13061 -CGGGGG
1 TCGGGGG
**
13067 GGGGGGG
1 TCGGGGG
*
13074 GCGGGGG
1 TCGGGGG
*
13081 GCGTGGGG
1 TCG-GGGG
13089 -CGGGGGGG
1 TC--GGGGG
*
13097 GCGGGGG
1 TCGGGGG
*
13104 GCGGGGG
1 TCGGGGG
*
13111 GCGGGGG
1 TCGGGGG
13118 GGGCGGGGGG
Statistics
Matches: 178, Mismatches: 20, Indels: 32
0.77 0.09 0.14
Matches are distributed among these distances:
6 29 0.16
7 105 0.59
8 27 0.15
9 17 0.10
ACGTcount: A:0.01, C:0.13, G:0.70, T:0.16
Consensus pattern (7 bp):
TCGGGGG
Found at i:12997 original size:81 final size:79
Alignment explanation
Indices: 12899--13046 Score: 237
Period size: 81 Copynumber: 1.8 Consensus size: 79
12889 TCGGTGGTTC
12899 GGGGTTCGGGGTTCGGGGTTCGGGGTCGGGGG-TCGGGGTTCGGGGGGCGGG-GGTTCGGGGGGT
1 GGGGTTCGGGGTTCGGGGTTCGGGGT-GGGGGTTCGGGGTTC-GGGGGCGGGCGGTTC--GGGGT
12962 TCGGGGTTCGGCGTTCGG
62 TCGGGGTTCGGCGTTCGG
*
12980 GGGGTTCGGGGTTCGGGGTTCGGGGTGGGGGTTCGGGGTTCGGGGTCGGGCGGTTCGGGGTTCGG
1 GGGGTTCGGGGTTCGGGGTTCGGGGTGGGGGTTCGGGGTTCGGGGGCGGGCGGTTCGGGGTTCGG
13045 GG
66 GG
13047 GGAGGGGGAG
Statistics
Matches: 64, Mismatches: 1, Indels: 6
0.90 0.01 0.08
Matches are distributed among these distances:
79 11 0.17
80 13 0.20
81 40 0.62
ACGTcount: A:0.00, C:0.14, G:0.63, T:0.23
Consensus pattern (79 bp):
GGGGTTCGGGGTTCGGGGTTCGGGGTGGGGGTTCGGGGTTCGGGGGCGGGCGGTTCGGGGTTCGG
GGTTCGGCGTTCGG
Found at i:13048 original size:9 final size:9
Alignment explanation
Indices: 12933--12990 Score: 58
Period size: 9 Copynumber: 7.2 Consensus size: 9
12923 GTCGGGGGTC
12933 GGGGTTCGG
1 GGGGTTCGG
12942 GGGG--C-G
1 GGGGTTCGG
12948 GGGGTTCGG
1 GGGGTTCGG
12957 GGGGTTC--
1 GGGGTTCGG
12964 GGGGTTC--
1 GGGGTTCGG
*
12971 GGCGTTCGG
1 GGGGTTCGG
12980 GGGGTTCGG
1 GGGGTTCGG
12989 GG
1 GG
12991 TTCGGGGTTC
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
6 5 0.12
7 14 0.33
8 1 0.02
9 22 0.52
ACGTcount: A:0.00, C:0.14, G:0.66, T:0.21
Consensus pattern (9 bp):
GGGGTTCGG
Found at i:13054 original size:1 final size:1
Alignment explanation
Indices: 13043--15564 Score: 1372
Period size: 1 Copynumber: 2522.0 Consensus size: 1
13033 TTCGGGGTTC
* * * * * * * * *
13043 GGGGGGAGGGGGAGGGGGCGGGGGGGGGGGGGCGGGGGGCGTGGGGCGGGGGGGGCGGGGGGCGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * ** * * *
13108 GGGGCGGGGGGGGCGGGGGGGAGGGGGAGGGGGGAGGGGGGGAGGGGTAGTGGCGGGGGGAGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * ** * * * * * * * * * * * *
13173 TGAGGTTGAGGGGTGAGGGGTGAGGGTGGAGGGGGGAGGGGGGAGGGGGGAGAGGGGGAGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * * * * * *
13238 AGGGGGAGGCGGTGAGTGGGGGAGGGAGGAGGGGGGAGGGGGGGAGGGGGAGGGTGGAGGGGGGA
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * ** ** * *
13303 GGGTGGAGGGGGAGGGTGAGGGGTGGAGGGGGTGGAGGGGGGATGGGGGTAGGGGGGAGGGGGAG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * *
13368 GGGGGAGGGGGGAGGGGGGGAGGGGGGGGGAGGGGGGAGGGGGAGGGGGAGGCGGGGAGGGTGGA
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * ** ** * * *
13433 CGGGGGAGGGGGGAGGGGGTAGGGGTAGGTGGGGAGGGGGGAGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * *
13498 GAGGGGGGGGGGGGGGAGGGGGGGGGGGGGGAGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGTG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* ** * * * * *
13563 GGGGGGGGTGGGGGGGGGGGGGGGGGGGGTAGGGGGAGGGGGGAGGGGGGAGGGGGGGAGGGGGA
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * * *
13628 TGGGGGGAGGGGGGAGGGGGGAGGGGTGAGGGGGGAGGGGGGAGGGGGGAGGGGGGAGGGTGGAG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * ** * * * *
13693 GGGTGAGGGGGGAGGGGGGGAGGGGGGAGGGGGACGGGGGAGGGGGGAGGGGAGGGGGAGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * *
13758 AGGGGGGCGGGGGGAGGGGGGCGGGGGGGGGAGGGGGGAGGGGGAGGGTGGAGGGGGGAGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * * * *
13823 AGGGTGGAGGGGTGAGGGGGGAGGGGGGAGGTGGGGGGGGAGGGGGGAGGGGGGAGGTGGGGAGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * *
13888 GGGGAGGGGGGAGGGGGAGGGGTGAGGGGGAGGGGGGAGGGGGGAGGGGGGAGGGGGGAGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * ** * *
13953 GGGGGGAGGGGGGGAGGGGGAGGGGTGAGGGGGGGAGGGGGAGGGGGGCGGGGTAGGGGGGAGGT
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * ** * *
14018 TGGAGGGGGGAGGGGGGACGGGGGGAGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * *
14083 GGTGGGGGGGGGTGGGGGGGGGGGGGGTGGGGGGGGGGGGGTGGGGGGGGGGGGGGTGGGGGGGT
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* *
14148 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGTGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * *
14213 GGGGGTGGGGGGGGGGTGGGGGGGTGGGGGGGGGGGGGGCGGGGGGGGTGGGGGGGGTGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * *
14278 GGGGTGGCGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGCGGGGTGGGA
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* ** * * * * * * ** *
14343 GGGGGGAGGGGGGATGGGGGGAGTGGGGAGGGGGGAGGGGAGGGGGGAGGGGGACGGGGGAGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * * *
14408 GGGTGGAGGGGGGGGGCGGGGGGAGGGGGGAGGGGGAGGGGGCGGTGGGGAGGGGGAGGGGTGAG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
** * * * * * * ** * *
14473 GGGGGATGGGGGAGGGTGGGCGGGGGGGGGTGAGGGGGGAGGGGGGGTAGGGGGAGGGGGGAGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * ** * ** * ** *
14538 GAGTGGGGGGGCGGGGGGAGGGGGCGGGGGGTAGGGGGGAGGGGGTAGGGTGGGATGGGGGGAGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * *
14603 GGGGAGGGGGGAGGGGGGAGGGGGTGAGGGGGGGGAGGGGGAGGGGGGAGGGGAGGGGGGAGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * *
14668 GAGGGAGGGGGGAGGGGGGAGGGGCGGGGGGAGGGGGGAGGGGGGGAGGGGAGGGGGGAGGGGAG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * *
14733 GGGGGGGAGGGGGGAGGGGGGAGGGGGGAGGGGGGAGGGGGGAGGTGGGGAGGGGGGAGGGGGGC
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * ** *
14798 GGGGGGAGGGGGGAGGGGGGCGGGGGAGGGGGGAGGGGGGAGGGGAGGGGGGGGGGAAGGGGGGA
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* ** * * * * * * *
14863 GGGGGGAGGGGGTAGGGGGGGAGGGGGGAGGGGGGAGGGGGGAGGGGGGAGGGGGGAGGGGGGAG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * * *
14928 GGGGGCGGGGGGAGTGGTGGAGGGGGGGAGGGGGGGAGGGGTGAGGGGGGAGGTGGGAGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
** * * * * * * ** * * * *
14993 GGGGGATGGGGGAGGGGGAGGGGGAGGGTGGGGGGAGGGGGGAGGGTTGGGAGGGGAGGGTGGGA
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * *
15058 GGGTGGAGGGGGGAGGGGGGCGGGGGGGGGGTGGCGGGCGGGGGGAGGGGGGCGTGGGGGGAGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * * *
15123 GTGGAGGGGGGAGGGGGGAGGGGGGGAGGGGGGAGGGGGGAGGGTGGGTGAGGGGGGAGTGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * ** * * * * *
15188 CGGGGGGGAGGGGGAGGGGGGGGGGGGGATGGGGGAGGGGGGGAGGGGGGAGGGGGAGGGGGGGA
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * *
15253 GGGGGGGGGGGGCGGGGGGGGAGGGGGGCGGGGGGAGGGGGGAGTGGGGGAGGGGGAGGGGGGAG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
** * * * * * * * * *
15318 GGGTTGAGGGGGGAGGGGGAGGGGGGAGGGGGAGGGGGGGGGGAGGGGGGAGGGGGGAGGGGGGA
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * *
15383 GGGGGGGAGGGGGGAGGGTGGAGGGGGGAGGGGGGAGGGGGGAGTGGGGGAGGGGGGAGGGGCGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * *
15448 GGGGGGGAGGGGGGAGGGGAGTGGGGGAGGGGGTGGGAGGGGGAGGGGGGAGGGGGGCGGGGGGA
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * ** * * * * *
15513 GTGGGGAGGGGTGATGGGTGGCGGGGGGAGGGGGGGGGAGGGGGGCGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
15565 AGCTCGCGCA
Statistics
Matches: 1737, Mismatches: 784, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 1737 1.00
ACGTcount: A:0.10, C:0.02, G:0.84, T:0.04
Consensus pattern (1 bp):
G
Found at i:13118 original size:7 final size:7
Alignment explanation
Indices: 13043--15566 Score: 2424
Period size: 7 Copynumber: 361.1 Consensus size: 7
13033 TTCGGGGTTC
13043 GGGGGGA
1 GGGGGGA
13050 -GGGGGA
1 GGGGGGA
13056 GGGGGCG-
1 GGGGG-GA
13063 GGGGGG-
1 GGGGGGA
*
13069 GGGGGGC
1 GGGGGGA
*
13076 GGGGGGC
1 GGGGGGA
*
13083 GTGGGGCGG
1 G-GGGG-GA
*
13092 GGGGGGC
1 GGGGGGA
*
13099 GGGGGGC
1 GGGGGGA
*
13106 GGGGGGC
1 GGGGGGA
*
13113 GGGGGGG
1 GGGGGGA
*
13120 GCGGGGGG
1 G-GGGGGA
13128 GAGGGGGA
1 G-GGGGGA
13136 GGGGGGA
1 GGGGGGA
13143 GGGGGGGA
1 -GGGGGGA
*
13151 GGGGTAGTGGC
1 -GGG--G-GGA
13162 GGGGGGA
1 GGGGGGA
*
13169 GGGGTGA
1 GGGGGGA
**
13176 -GGTTGA
1 GGGGGGA
*
13182 GGGGTGA
1 GGGGGGA
*
13189 GGGGTGA
1 GGGGGGA
*
13196 GGGTGGA
1 GGGGGGA
13203 GGGGGGA
1 GGGGGGA
13210 GGGGGGA
1 GGGGGGA
13217 GGGGGGA
1 GGGGGGA
13224 GAGGGGGA
1 G-GGGGGA
13232 GGGGGGA
1 GGGGGGA
13239 -GGGGGA
1 GGGGGGA
*
13245 GGCGGTGA
1 GG-GGGGA
13253 GTGGGGGA
1 G-GGGGGA
*
13261 GGGAGGA
1 GGGGGGA
13268 GGGGGGA
1 GGGGGGA
13275 GGGGGG-
1 GGGGGGA
13281 GAGGGGGA
1 G-GGGGGA
*
13289 GGGTGGA
1 GGGGGGA
13296 GGGGGGA
1 GGGGGGA
*
13303 GGGTGGA
1 GGGGGGA
13310 -GGGGGA
1 GGGGGGA
*
13316 -GGGTGA
1 GGGGGGA
13322 GGGGTGGA
1 GGGG-GGA
13330 GGGGGTGGA
1 -GGGG-GGA
13339 GGGGGGA
1 GGGGGGA
*
13346 TGGGGGTA
1 -GGGGGGA
13354 GGGGGGA
1 GGGGGGA
13361 -GGGGGA
1 GGGGGGA
13367 GGGGGGA
1 GGGGGGA
13374 GGGGGGA
1 GGGGGGA
13381 -GGGGG-
1 GGGGGGA
*
13386 GGAGGG-
1 GGGGGGA
13392 GGGGGGA
1 GGGGGGA
13399 GGGGGGA
1 GGGGGGA
13406 -GGGGGA
1 GGGGGGA
13412 -GGGGGA
1 GGGGGGA
13418 GGCGGGGA
1 GG-GGGGA
*
13426 GGGTGGA
1 GGGGGGA
*
13433 CGGGGGA
1 GGGGGGA
13440 GGGGGGA
1 GGGGGGA
*
13447 GGGGGTA
1 GGGGGGA
*
13454 -GGGGTA
1 GGGGGGA
13460 GGTGGGGA
1 GG-GGGGA
13468 GGGGGGA
1 GGGGGGA
13475 GGGGGG-
1 GGGGGGA
13481 GGGGGG-
1 GGGGGGA
13487 GGGGGG-
1 GGGGGGA
13493 GGGGGGA
1 GGGGGGA
*
13500 GGGGGGGG
1 -GGGGGGA
13508 GGGGGGA
1 GGGGGGA
*
13515 GGGGGGGG
1 -GGGGGGA
13523 GGGGGGA
1 GGGGGGA
13530 GGGGGG-
1 GGGGGGA
*
13536 GGGGGGT
1 GGGGGGA
13543 GGGGGG-
1 GGGGGGA
13549 GGGGGG-
1 GGGGGGA
*
13555 GGGGGGT
1 GGGGGGA
13562 GGGGGG-
1 GGGGGGA
13568 GGGTGGG-
1 GGG-GGGA
13575 GGGGGG-
1 GGGGGGA
13581 GGGGGG-
1 GGGGGGA
*
13587 GGGGGTA
1 GGGGGGA
13594 -GGGGGA
1 GGGGGGA
13600 GGGGGGA
1 GGGGGGA
13607 GGGGGGA
1 GGGGGGA
13614 GGGGGG-
1 GGGGGGA
13620 GAGGGGGA
1 G-GGGGGA
13628 TGGGGGGA
1 -GGGGGGA
13636 GGGGGGA
1 GGGGGGA
13643 GGGGGGA
1 GGGGGGA
*
13650 GGGGTGA
1 GGGGGGA
13657 GGGGGGA
1 GGGGGGA
13664 GGGGGGA
1 GGGGGGA
13671 GGGGGGA
1 GGGGGGA
13678 GGGGGGA
1 GGGGGGA
*
13685 GGGTGGA
1 GGGGGGA
*
13692 GGGGTGA
1 GGGGGGA
13699 GGGGGGA
1 GGGGGGA
13706 GGGGGGGA
1 -GGGGGGA
13714 GGGGGGA
1 GGGGGGA
13721 -GGGGGA
1 GGGGGGA
*
13727 CGGGGGA
1 GGGGGGA
13734 GGGGGGA
1 GGGGGGA
13741 --GGGGA
1 GGGGGGA
13746 -GGGGGA
1 GGGGGGA
13752 GGGGGGA
1 GGGGGGA
*
13759 GGGGGGC
1 GGGGGGA
13766 GGGGGGA
1 GGGGGGA
*
13773 GGGGGGCGGG
1 --GGGG-GGA
13783 GGGGGGA
1 GGGGGGA
13790 GGGGGGA
1 GGGGGGA
13797 -GGGGGA
1 GGGGGGA
*
13803 GGGTGGA
1 GGGGGGA
13810 GGGGGGA
1 GGGGGGA
13817 GGGGGGA
1 GGGGGGA
*
13824 GGGTGGA
1 GGGGGGA
*
13831 GGGGTGA
1 GGGGGGA
13838 GGGGGGA
1 GGGGGGA
13845 GGGGGGA
1 GGGGGGA
*
13852 -GGTGG-
1 GGGGGGA
13857 GGGGGGA
1 GGGGGGA
13864 GGGGGGA
1 GGGGGGA
13871 GGGGGGA
1 GGGGGGA
13878 GGTGGGGA
1 GG-GGGGA
13886 GGGGGGA
1 GGGGGGA
13893 GGGGGGA
1 GGGGGGA
13900 -GGGGGA
1 GGGGGGA
*
13906 GGGGTGA
1 GGGGGGA
13913 -GGGGGA
1 GGGGGGA
13919 GGGGGGA
1 GGGGGGA
13926 GGGGGGA
1 GGGGGGA
13933 GGGGGGA
1 GGGGGGA
13940 GGGGGGA
1 GGGGGGA
13947 GGGGGG-
1 GGGGGGA
13953 GGGGGGA
1 GGGGGGA
13960 GGGGGG-
1 GGGGGGA
13966 GAGGGGGA
1 G-GGGGGA
*
13974 GGGGTGA
1 GGGGGGA
13981 GGGGGG-
1 GGGGGGA
13987 GAGGGGGA
1 G-GGGGGA
13995 GGGGGG-
1 GGGGGGA
* *
14001 CGGGGTA
1 GGGGGGA
14008 GGGGGGA
1 GGGGGGA
**
14015 GGTTGGA
1 GGGGGGA
14022 GGGGGGA
1 GGGGGGA
14029 GGGGGGA
1 GGGGGGA
14036 CGGGGGGA
1 -GGGGGGA
14044 GGGGGTG-
1 GGGGG-GA
*
14051 GGGGGGG
1 GGGGGGA
*
14058 GGGGGGG
1 GGGGGGA
*
14065 GGGGGGG
1 GGGGGGA
*
14072 GGGGGGG
1 GGGGGGA
*
14079 GGGGGGT
1 GGGGGGA
14086 GGGGGG-
1 GGGGGGA
*
14092 GGGTGG-
1 GGGGGGA
14098 GGGGGG-
1 GGGGGGA
*
14104 GGGGGGT
1 GGGGGGA
*
14111 GGGGGGG
1 GGGGGGA
*
14118 GGGGGGT
1 GGGGGGA
14125 GGGGGG-
1 GGGGGGA
14131 GGGGGG-
1 GGGGGGA
14137 GGTGGGG-
1 GG-GGGGA
14144 GGGTGGG-
1 GGG-GGGA
14151 GGGGGG-
1 GGGGGGA
14157 GGGGGG-
1 GGGGGGA
14163 GGGGGG-
1 GGGGGGA
14169 GGGGGG-
1 GGGGGGA
14175 GGGGGG-
1 GGGGGGA
14181 GGGGGG-
1 GGGGGGA
14187 GGGGGG-
1 GGGGGGA
*
14193 GGGGGGC
1 GGGGGGA
14200 GGGGGG-
1 GGGGGGA
*
14206 TGGGGG-
1 GGGGGGA
*
14212 GGGGGGT
1 GGGGGGA
14219 GGGGGG-
1 GGGGGGA
*
14225 GGGGTG-
1 GGGGGGA
*
14231 GGGGGGT
1 GGGGGGA
14238 GGGGGG-
1 GGGGGGA
14244 GGGGGG-
1 GGGGGGA
14250 GGCGGGG-
1 GG-GGGGA
14257 GGGGTGG-
1 GGGG-GGA
*
14264 GGGGGGT
1 GGGGGGA
*
14271 GGGGGGG
1 GGGGGGA
*
14278 GGGGTGGC
1 GGGG-GGA
14286 GGGGGG-
1 GGGGGGA
*
14292 GGGGGTGG
1 GGGGG-GA
*
14300 GGGGGGG
1 GGGGGGA
*
14307 GGGGGGG
1 GGGGGGA
*
14314 GGGGGGG
1 GGGGGGA
*
14321 GGGGGGC
1 GGGGGGA
14328 GGGGGCG-
1 GGGGG-GA
14335 GGGTGGGA
1 GGG-GGGA
14343 GGGGGGA
1 GGGGGGA
14350 GGGGGGA
1 GGGGGGA
14357 TGGGGGGA
1 -GGGGGGA
*
14365 GTGGGGA
1 GGGGGGA
14372 GGGGGGA
1 GGGGGGA
14379 --GGGGA
1 GGGGGGA
14384 GGGGGGA
1 GGGGGGA
14391 -GGGGGA
1 GGGGGGA
*
14397 CGGGGGA
1 GGGGGGA
14404 GGGGGG-
1 GGGGGGA
14410 GTGGAGGG-
1 G-GG-GGGA
*
14418 GGGGGGC
1 GGGGGGA
14425 GGGGGGA
1 GGGGGGA
14432 GGGGGGA
1 GGGGGGA
14439 -GGGGGA
1 GGGGGGA
14445 GGGGGCG-
1 GGGGG-GA
*
14452 GTGGGGA
1 GGGGGGA
14459 -GGGGGA
1 GGGGGGA
*
14465 GGGGTGA
1 GGGGGGA
14472 GGGGGGA
1 GGGGGGA
*
14479 TGGGGGA
1 GGGGGGA
14486 GGGTGGG-
1 GGG-GGGA
*
14493 CGGGGG-
1 GGGGGGA
*
14499 GGGGTGA
1 GGGGGGA
14506 GGGGGGA
1 GGGGGGA
14513 GGGGGG-
1 GGGGGGA
14519 GTAGGGGGA
1 G--GGGGGA
14528 GGGGGGA
1 GGGGGGA
14535 GGGGAGTG-
1 GGGG-G-GA
*
14543 GGGGGGC
1 GGGGGGA
14550 GGGGGGA
1 GGGGGGA
14557 GGGGGCG-
1 GGGGG-GA
*
14564 GGGGGTA
1 GGGGGGA
14571 GGGGGGA
1 GGGGGGA
*
14578 GGGGGTA
1 GGGGGGA
14585 GGGTGGGA
1 GGG-GGGA
14593 TGGGGGGA
1 -GGGGGGA
14601 GGGGGGA
1 GGGGGGA
14608 GGGGGGA
1 GGGGGGA
14615 GGGGGGA
1 GGGGGGA
14622 GGGGGTGA
1 GGGGG-GA
*
14630 GGGGGGG
1 GGGGGGA
14637 GAGGGGGA
1 G-GGGGGA
14645 GGGGGGA
1 GGGGGGA
14652 --GGGGA
1 GGGGGGA
14657 GGGGGGA
1 GGGGGGA
14664 GGGGGAGGGA
1 --GGG-GGGA
14674 GGGGGGA
1 GGGGGGA
14681 GGGGGGA
1 GGGGGGA
*
14688 --GGGGC
1 GGGGGGA
14693 GGGGGGA
1 GGGGGGA
14700 GGGGGGA
1 GGGGGGA
14707 GGGGGG-
1 GGGGGGA
*
14713 GAGGGGA
1 GGGGGGA
14720 GGGGGGA
1 GGGGGGA
14727 GGGGAGG-
1 GGGG-GGA
14734 GGGGGGA
1 GGGGGGA
14741 GGGGGGA
1 GGGGGGA
14748 GGGGGGA
1 GGGGGGA
14755 GGGGGGA
1 GGGGGGA
14762 GGGGGGA
1 GGGGGGA
14769 GGGGGGA
1 GGGGGGA
14776 GGTGGGGA
1 GG-GGGGA
14784 GGGGGGA
1 GGGGGGA
*
14791 GGGGGGC
1 GGGGGGA
14798 GGGGGGA
1 GGGGGGA
14805 GGGGGGA
1 GGGGGGA
14812 GGGGGG-
1 GGGGGGA
*
14818 CGGGGGA
1 GGGGGGA
14825 GGGGGGA
1 GGGGGGA
14832 GGGGGGA
1 GGGGGGA
*
14839 GGGGAGGGG
1 -GGG-GGGA
14848 GGGGGGAA
1 GGGGGG-A
14856 GGGGGGA
1 GGGGGGA
14863 GGGGGGA
1 GGGGGGA
*
14870 GGGGGTA
1 GGGGGGA
14877 GGGGGGGA
1 -GGGGGGA
14885 GGGGGGA
1 GGGGGGA
14892 GGGGGGA
1 GGGGGGA
14899 GGGGGGA
1 GGGGGGA
14906 GGGGGGA
1 GGGGGGA
14913 GGGGGGA
1 GGGGGGA
14920 GGGGGGA
1 GGGGGGA
*
14927 GGGGGGC
1 GGGGGGA
14934 GGGGGGA
1 GGGGGGA
*
14941 GTGGTGGA
1 G-GGGGGA
14949 GGGGGGGA
1 -GGGGGGA
14957 GGGGGGGA
1 -GGGGGGA
*
14965 GGGGTGA
1 GGGGGGA
14972 GGGGGGA
1 GGGGGGA
*
14979 GGTGGGA
1 GGGGGGA
14986 GGGGGG-
1 GGGGGGA
14992 GGGGGGA
1 GGGGGGA
*
14999 TGGGGGA
1 GGGGGGA
*
15006 GGGGGAGG
1 GGGGG-GA
*
15014 GGGAGGGT
1 GGG-GGGA
15022 GGGGGGA
1 GGGGGGA
15029 GGGGGGA
1 GGGGGGA
15036 GGGTTGGGA
1 GGG--GGGA
15045 --GGGGA
1 GGGGGGA
15050 GGGTGGGA
1 GGG-GGGA
*
15058 GGGTGGA
1 GGGGGGA
15065 GGGGGGA
1 GGGGGGA
*
15072 GGGGGGC
1 GGGGGGA
15079 GGGGGG-
1 GGGGGGA
*
15085 GGGGTGGC
1 GGGG-GGA
15093 GGGCGGG-
1 GGG-GGGA
*
15100 GGGAGG-
1 GGGGGGA
* *
15106 GGGGCGT
1 GGGGGGA
15113 GGGGGGA
1 GGGGGGA
15120 GGGGTGGA
1 GGGG-GGA
15128 GGGGGGA
1 GGGGGGA
15135 GGGGGGA
1 GGGGGGA
15142 GGGGGGGA
1 -GGGGGGA
15150 GGGGGGA
1 GGGGGGA
15157 GGGGGGA
1 GGGGGGA
15164 GGGTGGGTGA
1 -GG-GGG-GA
15174 GGGGGGA
1 GGGGGGA
*
15181 GTGGGGGC
1 G-GGGGGA
15189 GGGGGG-
1 GGGGGGA
15195 GAGGGGGA
1 G-GGGGGA
*
15203 GGGGGGG
1 GGGGGGA
15210 GGGGGGA
1 GGGGGGA
*
15217 TGGGGGA
1 GGGGGGA
15224 GGGGGGGA
1 -GGGGGGA
15232 GGGGGGA
1 GGGGGGA
15239 -GGGGGA
1 GGGGGGA
15245 GGGGGGGA
1 -GGGGGGA
*
15253 GGGGGGG
1 GGGGGGA
*
15260 GGGGGCGG
1 GGGGG-GA
15268 GGGGGGA
1 GGGGGGA
*
15275 GGGGGGC
1 GGGGGGA
15282 GGGGGGA
1 GGGGGGA
15289 GGGGGGA
1 GGGGGGA
15296 GTGGGGGA
1 G-GGGGGA
15304 -GGGGGA
1 GGGGGGA
15310 GGGGGGA
1 GGGGGGA
*
15317 GGGGTTGA
1 GGGG-GGA
15325 GGGGGGA
1 GGGGGGA
15332 -GGGGGA
1 GGGGGGA
15338 GGGGGGA
1 GGGGGGA
15345 -GGGGGA
1 GGGGGGA
15351 --GGGG-
1 GGGGGGA
15355 GGGGGGA
1 GGGGGGA
15362 GGGGGGA
1 GGGGGGA
15369 GGGGGGA
1 GGGGGGA
15376 GGGGGGA
1 GGGGGGA
15383 GGGGGGGA
1 -GGGGGGA
15391 GGGGGGA
1 GGGGGGA
*
15398 GGGTGGA
1 GGGGGGA
15405 GGGGGGA
1 GGGGGGA
15412 GGGGGGA
1 GGGGGGA
15419 GGGGGGA
1 GGGGGGA
15426 GTGGGGGA
1 G-GGGGGA
15434 GGGGGGA
1 GGGGGGA
*
15441 GGGGCGGG
1 GGGG-GGA
15449 GGGGGGA
1 GGGGGGA
15456 GGGGGGA
1 GGGGGGA
15463 --GGGGA
1 GGGGGGA
15468 GTGGGGGA
1 G-GGGGGA
*
15476 GGGGGTGG
1 GGGGG-GA
15484 GAGGGGGA
1 G-GGGGGA
15492 GGGGGGA
1 GGGGGGA
*
15499 GGGGGGC
1 GGGGGGA
15506 GGGGGGA
1 GGGGGGA
*
15513 GTGGGGA
1 GGGGGGA
*
15520 GGGGTGA
1 GGGGGGA
*
15527 TGGGTGGCGG
1 -GGG-GG-GA
*
15537 GGGGAGGG
1 GGGG-GGA
15545 GGGGGGA
1 GGGGGGA
*
15552 GGGGGGC
1 GGGGGGA
15559 GGGGGGA
1 GGGGGGA
15566 G
1 G
15567 CTCGCGCAGT
Statistics
Matches: 2192, Mismatches: 163, Indels: 324
0.82 0.06 0.12
Matches are distributed among these distances:
5 32 0.01
6 376 0.17
7 1369 0.62
8 351 0.16
9 49 0.02
10 13 0.01
11 2 0.00
ACGTcount: A:0.10, C:0.02, G:0.84, T:0.04
Consensus pattern (7 bp):
GGGGGGA
Found at i:16030 original size:6 final size:7
Alignment explanation
Indices: 15614--18473 Score: 1460
Period size: 7 Copynumber: 397.3 Consensus size: 7
15604 GAGAGAGCGA
15614 AAACCCG
1 AAACCCG
15621 AAACCCG
1 AAACCCG
15628 AAACCCCG
1 AAA-CCCG
15636 AAACCCG
1 AAACCCG
*
15643 ACTACCCG
1 A-AACCCG
15651 AAACCCTG
1 AAACCC-G
15659 -AACCCG
1 AAACCCG
*
15665 CATACCCTG
1 -AAACCC-G
15674 -AACCCG
1 AAACCCG
*
15680 ATTACCCGG
1 A-AACCC-G
15689 AAACCCCG
1 AAA-CCCG
15697 -AACCTCG
1 AAACC-CG
15704 TAAACCCG
1 -AAACCCG
*
15712 CAACCCTG
1 AAACCC-G
15720 AAAACCCG
1 -AAACCCG
15728 TAAACCCCG
1 -AAA-CCCG
15737 AAAACCCG
1 -AAACCCG
15745 AAACCCG
1 AAACCCG
15752 AAA-CCG
1 AAACCCG
15758 AAA-CCG
1 AAACCCG
15764 AATACCCG
1 AA-ACCCG
*
15772 TATACACCCT
1 -A-A-ACCCG
15782 AAACCCCG
1 AAA-CCCG
15790 AAAACCCG
1 -AAACCCG
15798 AAACCCG
1 AAACCCG
**
15805 -TCCACCG
1 AAAC-CCG
15812 AAACCCG
1 AAACCCG
*
15819 ACACCCG
1 AAACCCG
15826 ATAACCCG
1 A-AACCCG
15834 AAAACCCG
1 -AAACCCG
15842 AAACCCG
1 AAACCCG
*
15849 AAAACCGG
1 -AAACCCG
*
15857 AACCCCG
1 AAACCCG
*
15864 AATCCCCG
1 AA-ACCCG
15872 AAACTCTCG
1 AAAC-C-CG
15881 TAAACCCG
1 -AAACCCG
15889 AACACCCG
1 AA-ACCCG
15897 ATAACCCG
1 A-AACCCG
15905 -AACCCG
1 AAACCCG
*
15911 AAAACCG
1 AAACCCG
15918 AAACCCG
1 AAACCCG
15925 AAACCCCG
1 AAA-CCCG
*
15933 AACCCCG
1 AAACCCG
15940 ATAACCCG
1 A-AACCCG
15948 AAACCCG
1 AAACCCG
15955 AAAACCCG
1 -AAACCCG
15963 AAACCCG
1 AAACCCG
*
15970 TAACCCG
1 AAACCCG
15977 ACACACCCGG
1 A-A-ACCC-G
15987 AATACCCG
1 AA-ACCCG
*
15995 GAA--CG
1 AAACCCG
16000 AAACCCG
1 AAACCCG
16007 AAAACCCG
1 -AAACCCG
16015 AAACCCG
1 AAACCCG
16022 AAA-CCG
1 AAACCCG
16028 AAA-CCG
1 AAACCCG
16034 AAATCCCG
1 AAA-CCCG
*
16042 AACCCCTG
1 AAACCC-G
*
16050 -GA-CCG
1 AAACCCG
16055 AAACCCG
1 AAACCCG
16062 AAACCCG
1 AAACCCG
16069 AATACCCG
1 AA-ACCCG
16077 AAACCCG
1 AAACCCG
*
16084 AAACCCT
1 AAACCCG
16091 AAACCCG
1 AAACCCG
**
16098 AAAATC-
1 AAACCCG
*** *
16104 TCCCCCC
1 AAACCCG
***
16111 CTCCCCG
1 AAACCCG
16118 TAAACCCG
1 -AAACCCG
16126 -AA-CCG
1 AAACCCG
16131 AAATCCCG
1 AAA-CCCG
16139 TAAA-CCG
1 -AAACCCG
16146 AAACCCG
1 AAACCCG
**
16153 CATCCCCG
1 -AAACCCG
16161 AAACCCG
1 AAACCCG
*
16168 CAACCTCG
1 AAACC-CG
16176 AAACCTCG
1 AAACC-CG
16184 AAATCTCCG
1 AAA-C-CCG
16193 AAA-CCG
1 AAACCCG
*
16199 AAATCCG
1 AAACCCG
16206 AAACCCG
1 AAACCCG
16213 ATAACCCG
1 A-AACCCG
16221 AAAACCCG
1 -AAACCCG
*
16229 AAACCCT
1 AAACCCG
16236 AAACCCG
1 AAACCCG
*
16243 CAACCCG
1 AAACCCG
16250 -AACCCG
1 AAACCCG
16256 AAACCCG
1 AAACCCG
16263 AAACCCG
1 AAACCCG
16270 AAACCCG
1 AAACCCG
16277 AAACCCG
1 AAACCCG
16284 AAAACCCG
1 -AAACCCG
16292 AAACCCG
1 AAACCCG
16299 -AACGCCG
1 AAAC-CCG
16306 -AACCCTG
1 AAACCC-G
16313 AAACTTCCG
1 AAAC--CCG
16322 AAAATCCCG
1 -AAA-CCCG
16331 AAACCCG
1 AAACCCG
16338 AAA-CCG
1 AAACCCG
16344 AAA-CCG
1 AAACCCG
*
16350 AAACCCTA
1 AAACCC-G
*
16358 AAACACG
1 AAACCCG
16365 AAACCCG
1 AAACCCG
16372 AAACCCG
1 AAACCCG
16379 AAACCCG
1 AAACCCG
16386 AAACCCTCG
1 AAA-CC-CG
*
16395 AAAACCG
1 AAACCCG
16402 AAAACCCG
1 -AAACCCG
16410 AAAACCCCG
1 -AAA-CCCG
16419 AAACCCG
1 AAACCCG
16426 AAACCCG
1 AAACCCG
16433 AAACCCG
1 AAACCCG
16440 AAACCTCG
1 AAACC-CG
16448 AAACCCG
1 AAACCCG
* *
16455 AAAACCT
1 AAACCCG
16462 AAACCCG
1 AAACCCG
*
16469 AAATCCG
1 AAACCCG
16476 AAACTCCTG
1 AAAC-CC-G
*
16485 CAACCCG
1 AAACCCG
*
16492 AATCCCG
1 AAACCCG
16499 AAACCCG
1 AAACCCG
16506 AAACCCGG
1 AAACCC-G
16514 AAACCCG
1 AAACCCG
16521 AAAACCCG
1 -AAACCCG
16529 ACAACCCG
1 A-AACCCG
16537 -AACCCG
1 AAACCCG
16543 AAACCCG
1 AAACCCG
16550 -AA-CCG
1 AAACCCG
16555 AAACCCG
1 AAACCCG
16562 AAATCCCG
1 AAA-CCCG
16570 AACACCCTG
1 AA-ACCC-G
16579 AAACCCG
1 AAACCCG
16586 -AACCCG
1 AAACCCG
16592 AAA-CCG
1 AAACCCG
16598 AAACCCGG
1 AAACCC-G
16606 AAACCCG
1 AAACCCG
16613 AAACCCTG
1 AAACCC-G
*
16621 AACACCCT
1 AA-ACCCG
*
16629 ATACCCTCTG
1 A-AACC-C-G
16639 -AACCC-
1 AAACCCG
16644 AAACCCG
1 AAACCCG
16651 CAAACCCG
1 -AAACCCG
16659 AAACCCCTG
1 AAA-CCC-G
* *
16668 CATACCGG
1 -AAACCCG
16676 AAACTCCTG
1 AAAC-CC-G
16685 AAATCCCG
1 AAA-CCCG
16693 ATAA-CCG
1 A-AACCCG
16700 AACACCCG
1 AA-ACCCG
16708 AAACCCG
1 AAACCCG
*
16715 CAACCCG
1 AAACCCG
16722 AAACCCG
1 AAACCCG
16729 AAACCCG
1 AAACCCG
16736 AAACCCG
1 AAACCCG
*
16743 -CACCTCG
1 AAACC-CG
16750 AAACCCG
1 AAACCCG
*
16757 AAACCAG
1 AAACCCG
16764 ATAACCCCG
1 A-AA-CCCG
16773 ACAAACCCG
1 --AAACCCG
16782 AAAACCCG
1 -AAACCCG
16790 AAACCTCG
1 AAACC-CG
16798 AAACCCG
1 AAACCCG
*
16805 AAACCGG
1 AAACCCG
*
16812 AAACCGG
1 AAACCCG
16819 AAACCCG
1 AAACCCG
16826 AAATCCCG
1 AAA-CCCG
16834 AAAACCCG
1 -AAACCCG
16842 ATAACCCGG
1 A-AACCC-G
16851 AAACCCCG
1 AAA-CCCG
16859 AAACCCCG
1 AAA-CCCG
16867 -AACCCG
1 AAACCCG
16873 AAACCCG
1 AAACCCG
16880 AAAACCCG
1 -AAACCCG
*
16888 AAACCAG
1 AAACCCG
*
16895 AAACCCC
1 AAACCCG
* *
16902 ACACCCC
1 AAACCCG
16909 AAACCC-
1 AAACCCG
*
16915 AAACCCCA
1 AAA-CCCG
*
16923 AAACCCC
1 AAACCCG
*
16930 AAACTCCAT
1 AAAC-CC-G
*
16939 AAACCCC
1 AAACCCG
16946 AATA-CC-
1 AA-ACCCG
16952 AAACTCC-
1 AAAC-CCG
16959 AAACCCG
1 AAACCCG
* *
16966 CAACCCC
1 AAACCCG
*
16973 AAACCTCCT
1 AAA-C-CCG
*
16982 AAACTCCC
1 AAAC-CCG
*
16990 AAACCTCTC
1 AAACC-C-G
*
16999 AATACCCC
1 AA-ACCCG
*
17007 AAACCCC
1 AAACCCG
*
17014 AAACCCCC
1 AAA-CCCG
* *
17022 ATACCCC
1 AAACCCG
*
17029 AAACCCC
1 AAACCCG
17036 AAACCC-
1 AAACCCG
*
17042 AAACCCC
1 AAACCCG
17049 AAA-CC-
1 AAACCCG
*
17054 AAACCCCAA
1 AAA-CCC-G
*
17063 AATCACCCC
1 AA--ACCCG
17072 AAACCC-
1 AAACCCG
*
17078 CAACCC-
1 AAACCCG
* *
17084 AACCCTCC
1 AAACC-CG
*
17092 AAACTCCC
1 AAAC-CCG
* *
17100 ACACCCC
1 AAACCCG
17107 AAACCC-
1 AAACCCG
*
17113 -AACCCC
1 AAACCCG
* *
17119 AATCCCC
1 AAACCCG
17126 AAACCC-
1 AAACCCG
17132 ATAACCCG
1 A-AACCCG
*
17140 CAAACCCCA
1 -AAA-CCCG
17149 AAACCC-
1 AAACCCG
*
17155 AAACCCCAA
1 AAA-CCC-G
*
17164 AAACCCTC
1 AAACCC-G
* *
17172 AACCCCA
1 AAACCCG
*
17179 AAACCCCA
1 AAA-CCCG
*
17187 AAACCCT
1 AAACCCG
17194 AAACCC-
1 AAACCCG
*
17200 TAACCCG
1 AAACCCG
17207 AAA-CCG
1 AAACCCG
17213 AAACCCG
1 AAACCCG
*
17220 ACACCCG
1 AAACCCG
17227 AAACCCG
1 AAACCCG
17234 AAACCCG
1 AAACCCG
17241 AAAACCCG
1 -AAACCCG
17249 -AACCCG
1 AAACCCG
17255 AAA-CCG
1 AAACCCG
*
17261 AAAACCG
1 AAACCCG
*
17268 AAACCCT
1 AAACCCG
17275 AAA-CCG
1 AAACCCG
17281 AAACCCG
1 AAACCCG
17288 -AA-CCG
1 AAACCCG
17293 AAACCCG
1 AAACCCG
*
17300 AAACCCTA
1 AAACCC-G
17308 AAACCCG
1 AAACCCG
17315 -AACCCG
1 AAACCCG
17321 AAACCCG
1 AAACCCG
*
17328 AAACCCCT
1 AAA-CCCG
*
17336 CAACCCGG
1 AAACCC-G
17344 AAACCCG
1 AAACCCG
*
17351 AAACCAG
1 AAACCCG
17358 AAA--CG
1 AAACCCG
17363 AAAACCCG
1 -AAACCCG
17371 -AACCCG
1 AAACCCG
*
17377 TCAACCCG
1 -AAACCCG
17385 AAACCCG
1 AAACCCG
*
17392 -AACCCT
1 AAACCCG
17398 AAACCCG
1 AAACCCG
17405 AAAACCCG
1 -AAACCCG
17413 -AACCCG
1 AAACCCG
*
17419 AAAACCG
1 AAACCCG
17426 -AACCCG
1 AAACCCG
17432 AAACCCG
1 AAACCCG
17439 AAA-CCG
1 AAACCCG
17445 AAACCCG
1 AAACCCG
*
17452 AAACCCT
1 AAACCCG
17459 AAA-CCG
1 AAACCCG
17465 TAAA-CCG
1 -AAACCCG
17472 AAACCCG
1 AAACCCG
17479 AAAACCCG
1 -AAACCCG
17487 AAACCCG
1 AAACCCG
*
17494 -CACCCG
1 AAACCCG
17500 -AACTCCG
1 AAAC-CCG
*
17507 CAACCCG
1 AAACCCG
*
17514 AAACCCAA
1 AAACCC-G
17522 AAACCCG
1 AAACCCG
17529 AAACCCTG
1 AAACCC-G
*
17537 AAAACCG
1 AAACCCG
*
17544 AAACCCT
1 AAACCCG
*
17551 AAACACTG
1 AAAC-CCG
17559 AAACCCG
1 AAACCCG
17566 AAAACCCG
1 -AAACCCG
*
17574 -CA-CCG
1 AAACCCG
*
17579 AAACCCT
1 AAACCCG
17586 AAACCC-
1 AAACCCG
*
17592 AAACCCT
1 AAACCCG
* *
17599 AACCCCTA
1 AAACCC-G
*
17607 AAACCCTT
1 AAACCC-G
*
17615 CAACCC-
1 AAACCCG
* *
17621 TAACCCT
1 AAACCCG
* *
17628 CAACCCT
1 AAACCCG
* *
17635 CAA-CCT
1 AAACCCG
*
17641 AAACCCCC
1 AAA-CCCG
* *
17649 AACCCCC
1 AAACCCG
17656 AAACCC-
1 AAACCCG
* *
17662 CAACCCC
1 AAACCCG
*
17669 AAACCCC
1 AAACCCG
17676 AAACCC-
1 AAACCCG
17682 AAACCC-
1 AAACCCG
*
17688 AAACCCCA
1 AAA-CCCG
*
17696 AAACCCCC
1 AAA-CCCG
* *
17704 AACCCCT
1 AAACCCG
17711 AAACCC-
1 AAACCCG
* *
17717 ACACCCCTTC
1 A-AACCC--G
*
17727 AAACCCCAA
1 AAA-CCC-G
*
17736 AAACCCC
1 AAACCCG
* *
17743 TAACCCC
1 AAACCCG
*
17750 AAACCCC
1 AAACCCG
*
17757 AAACCCT
1 AAACCCG
* *
17764 AACCCCT
1 AAACCCG
* *
17771 AACCCCT
1 AAACCCG
*
17778 AAACCCTT
1 AAACCC-G
*
17786 AAACCCTT
1 AAACCC-G
*
17794 AAACCCT
1 AAACCCG
17801 AAACCC-
1 AAACCCG
* *
17807 TAACCCT
1 AAACCCG
*
17814 AAACCCT
1 AAACCCG
*
17821 AAACCCT
1 AAACCCG
*
17828 AAACCCT
1 AAACCCG
*
17835 AAACCCT
1 AAACCCG
*
17842 AAACCCT
1 AAACCCG
*
17849 AAACCCT
1 AAACCCG
*
17856 AAACCCT
1 AAACCCG
17863 AAACCC-
1 AAACCCG
* *
17869 TAACCCT
1 AAACCCG
*
17876 AAACCCT
1 AAACCCG
*
17883 AAACCCTA
1 AAACCC-G
*
17891 AAACCCT
1 AAACCCG
*
17898 AAACCCT
1 AAACCCG
*
17905 AAACCCT
1 AAACCCG
*
17912 AAACCCT
1 AAACCCG
*
17919 AAACCCT
1 AAACCCG
*
17926 AAACCCT
1 AAACCCG
*
17933 AAACCCT
1 AAACCCG
*
17940 AAACCCT
1 AAACCCG
17947 AAACCC-
1 AAACCCG
* *
17953 TAACCCC
1 AAACCCG
* *
17960 TAACCCC
1 AAACCCG
* *
17967 TAACCCC
1 AAACCCG
* *
17974 TAACCCC
1 AAACCCG
* *
17981 TAACCCC
1 AAACCCG
* *
17988 TAACCCC
1 AAACCCG
* *
17995 TAACCCT
1 AAACCCG
* *
18002 AACCCCT
1 AAACCCG
* *
18009 AACCCCT
1 AAACCCG
*
18016 AAACCCCT
1 AAA-CCCG
*
18024 AAACCCT
1 AAACCCG
*
18031 AAACCCT
1 AAACCCG
*
18038 AAACCCT
1 AAACCCG
*
18045 AAACCCT
1 AAACCCG
*
18052 AAACCCT
1 AAACCCG
*
18059 AAACCCT
1 AAACCCG
*
18066 AAACCCT
1 AAACCCG
*
18073 AAACCCT
1 AAACCCG
*
18080 AAACCCT
1 AAACCCG
*
18087 AAACCCT
1 AAACCCG
*
18094 AAACCCT
1 AAACCCG
*
18101 AAACCCT
1 AAACCCG
18108 AAACCC-
1 AAACCCG
18114 AAA-CC-
1 AAACCCG
18119 -AACCCG
1 AAACCCG
*
18125 AACCCCG
1 AAACCCG
*
18132 AACCCCG
1 AAACCCG
18139 -AACCC-
1 AAACCCG
18144 -AACCCG
1 AAACCCG
*
18150 AACCCCG
1 AAACCCG
*
18157 AACCCCG
1 AAACCCG
*
18164 AACCCCG
1 AAACCCG
*
18171 AACCCCG
1 AAACCCG
18178 AAACCCCG
1 AAA-CCCG
18186 -AACCCG
1 AAACCCG
18192 -AACCCG
1 AAACCCG
18198 -AACCCG
1 AAACCCG
*
18204 AACCCCG
1 AAACCCG
*
18211 AACCCCG
1 AAACCCG
*
18218 AACCCCG
1 AAACCCG
*
18225 AACCCCG
1 AAACCCG
*
18232 AACCCCG
1 AAACCCG
*
18239 AACCCCG
1 AAACCCG
*
18246 AACCCCG
1 AAACCCG
*
18253 AACCCCG
1 AAACCCG
*
18260 AACCCCG
1 AAACCCG
*
18267 AACCCCG
1 AAACCCG
18274 -AACCCG
1 AAACCCG
*
18280 AACCCCG
1 AAACCCG
*
18287 AACCCCG
1 AAACCCG
18294 ACAACCCG
1 A-AACCCG
*
18302 AACCCCG
1 AAACCCG
*
18309 AACCCACCG
1 AA-AC-CCG
*
18318 AACCCCG
1 AAACCCG
18325 AACCGACCCG
1 AA---ACCCG
18335 -AACCCG
1 AAACCCG
*
18341 AACCCCG
1 AAACCCG
*
18348 AATCCCG
1 AAACCCG
*
18355 -AACCCTA
1 AAACCC-G
18362 AAACCCCG
1 AAA-CCCG
*
18370 AAACCCCA
1 AAA-CCCG
18378 AAACCCG
1 AAACCCG
18385 -AACCTCG
1 AAACC-CG
*
18392 -AACCCTA
1 AAACCC-G
*
18399 AAACCCC
1 AAACCCG
18406 AAACCCCG
1 AAA-CCCG
*
18414 -AACCCTA
1 AAACCC-G
18421 AAACCCCG
1 AAA-CCCG
*
18429 AACCCCG
1 AAACCCG
*
18436 AACCCCG
1 AAACCCG
18443 AAACCTCG
1 AAACC-CG
*
18451 AACCCCG
1 AAACCCG
*
18458 AACCCCG
1 AAACCCG
*
18465 AACCCCG
1 AAACCCG
18472 AA
1 AA
18474 CCCTGGACCC
Statistics
Matches: 2393, Mismatches: 224, Indels: 472
0.77 0.07 0.15
Matches are distributed among these distances:
4 2 0.00
5 36 0.02
6 310 0.13
7 1309 0.55
8 552 0.23
9 145 0.06
10 36 0.02
11 3 0.00
ACGTcount: A:0.39, C:0.45, G:0.10, T:0.06
Consensus pattern (7 bp):
AAACCCG
Found at i:16907 original size:21 final size:20
Alignment explanation
Indices: 16895--17239 Score: 126
Period size: 20 Copynumber: 16.3 Consensus size: 20
16885 CCGAAACCAG
16895 AAACCCCACACCCCAAACCC
1 AAACCCCACACCCCAAACCC
*
16915 AAACCCCAAAACCCCAAACTCC
1 AAACCCC-ACACCCCAAAC-CC
**
16937 ATAAACCCCA-ATACCAAACTCC
1 --AAACCCCACACCCCAAAC-CC
16959 AAACCCGCA-ACCCCAAACCTCC
1 AAACCC-CACACCCCAAA-C-CC
*
16981 TAAACTCCCAAACCTCTCAATACCCC
1 -AAAC-CCCACACC-C-CAA-A-CCC
* *
17007 AAACCCCAAACCCCCATACCCC
1 AAACCCCACA-CCCCA-AACCC
*
17029 AAACCCCA-AACCCAAACCCC
1 AAACCCCACACCCCAAA-CCC
*
17049 AAA--CCAAACCCCAAAATCACCCC
1 AAACCCCACACCCC--AA--A-CCC
*
17072 AAACCCCA-A-CCCAACCCTCC
1 AAACCCCACACCCCAA-AC-CC
17092 AAACTCCCACACCCCAAACCC
1 AAAC-CCCACACCCCAAACCC
17113 -AACCCCA-ATCCCCAAACCC
1 AAACCCCACA-CCCCAAACCC
*
17132 ATAACCCGCAAACCCCAAAACCC
1 A-AACCC-CACACCCC-AAACCC
17155 AAACCCCA-A----AAACCC
1 AAACCCCACACCCCAAACCC
* *
17170 TCAACCCCAAAACCCCAAAACCC
1 -AAACCCC-ACACCCC-AAACCC
* * *
17193 TAAACCCTA-ACCCGAAACCG
1 -AAACCCCACACCCCAAACCC
* *
17213 AAACCCGACACCCGAAACCC
1 AAACCCCACACCCCAAACCC
17233 GAAACCC
1 -AAACCC
17240 GAAAACCCGA
Statistics
Matches: 265, Mismatches: 18, Indels: 83
0.72 0.05 0.23
Matches are distributed among these distances:
15 6 0.02
16 6 0.02
17 1 0.00
18 5 0.02
19 27 0.10
20 49 0.18
21 46 0.17
22 41 0.15
23 45 0.17
24 21 0.08
25 10 0.04
26 5 0.02
27 3 0.01
ACGTcount: A:0.41, C:0.51, G:0.02, T:0.06
Consensus pattern (20 bp):
AAACCCCACACCCCAAACCC
Found at i:17018 original size:119 final size:107
Alignment explanation
Indices: 16895--17165 Score: 275
Period size: 120 Copynumber: 2.4 Consensus size: 107
16885 CCGAAACCAG
* *
16895 AAACCCCACACCCCAAA-CCCAAACCCCAAAACCCCAAACTCCATAAACCCCAATACCAAACTCC
1 AAACCCCA-ACCCCAAACCCCAAACCCCAAAACCCCAAAC-CCA-AAACCCCAAAACC--ACCCC
16959 AAACCCGCAACCCCAAACCTCCTAAACTCCCAAACCTCTCAATACCCCAAACCCC
61 AAACCC-CAA-CCCAAACCTCC-AAACTCCCAAACC-C-CAA-A-CCC-AACCCC
*
17014 AAACCCCCATACCCCAAACCCCAAA-CCC-AAACCCCAAA-CC-AAACCCCAAAATCACCCCAAA
1 AAA-CCCCA-ACCCCAAACCCCAAACCCCAAAACCCCAAACCCAAAACCCCAAAACCACCCCAAA
* *
17075 CCCCAACCCAACCCTCCAAACTCCCACACCCCAAACCCAACCCC
64 CCCCAACCCAAACCTCCAAACTCCCAAACCCCAAACCCAACCCC
* *
17119 AATCCCCAAACCCATAACCCGCAAACCCCAAAA-CCCAAACCCCAAAA
1 AAACCCCAACCCCA-AACCC-CAAACCCCAAAACCCCAAA-CCCAAAA
17166 ACCCTCAACC
Statistics
Matches: 135, Mismatches: 8, Indels: 28
0.79 0.05 0.16
Matches are distributed among these distances:
103 5 0.04
104 10 0.07
105 12 0.09
106 12 0.09
107 4 0.03
108 5 0.04
109 4 0.03
110 12 0.09
111 10 0.07
112 3 0.02
113 10 0.07
115 11 0.08
117 2 0.01
119 13 0.10
120 16 0.12
121 6 0.04
ACGTcount: A:0.41, C:0.52, G:0.01, T:0.06
Consensus pattern (107 bp):
AAACCCCAACCCCAAACCCCAAACCCCAAAACCCCAAACCCAAAACCCCAAAACCACCCCAAACC
CCAACCCAAACCTCCAAACTCCCAAACCCCAAACCCAACCCC
Found at i:17178 original size:23 final size:23
Alignment explanation
Indices: 17141--17199 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
17131 CATAACCCGC
* *
17141 AAACCCCAAAACCC-AAACCCCAA
1 AAACCCTAAACCCCAAAACCCC-A
*
17164 AAACCCTCAACCCCAAAACCCCA
1 AAACCCTAAACCCCAAAACCCCA
17187 AAACCCTAAACCC
1 AAACCCTAAACCC
17200 TAACCCGAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 24 0.77
24 7 0.23
ACGTcount: A:0.47, C:0.49, G:0.00, T:0.03
Consensus pattern (23 bp):
AAACCCTAAACCCCAAAACCCCA
Found at i:18762 original size:7 final size:7
Alignment explanation
Indices: 16851--18829 Score: 756
Period size: 7 Copynumber: 280.6 Consensus size: 7
16841 GATAACCCGG
16851 AAACCCC
1 AAACCCC
16858 GAAACCCC
1 -AAACCCC
* *
16866 GAACCCG
1 AAACCCC
*
16873 AAACCCGA
1 AAACCC-C
*
16881 AAACCCG
1 AAACCCC
**
16888 AAACCAG
1 AAACCCC
16895 AAACCCC
1 AAACCCC
*
16902 ACACCCC
1 AAACCCC
16909 AAA-CCC
1 AAACCCC
16915 AAACCCC
1 AAACCCC
16922 AAAACCCC
1 -AAACCCC
*
16930 AAACTCCAT
1 AAAC-CC-C
16939 AAACCCC
1 AAACCCC
16946 AATA--CC
1 AA-ACCCC
*
16952 AAACTCC
1 AAACCCC
16959 AAACCCGC
1 AAACCC-C
16967 -AACCCC
1 AAACCCC
16973 AAACCTCC
1 AAACC-CC
16981 TAAACTCCC
1 -AAAC-CCC
16990 AAACCTCTC
1 AAACC-C-C
16999 AATACCCC
1 AA-ACCCC
17007 AAACCCC
1 AAACCCC
17014 AAACCCCC
1 AAA-CCCC
*
17022 ATACCCC
1 AAACCCC
17029 AAACCCC
1 AAACCCC
17036 AAA-CCC
1 AAACCCC
17042 AAACCCC
1 AAACCCC
17049 AAA--CC
1 AAACCCC
17054 AAACCCC
1 AAACCCC
17061 AAAATCACCCC
1 --AA--ACCCC
17072 AAACCCC
1 AAACCCC
17079 -AA-CCC
1 AAACCCC
*
17084 AACCCTCC
1 AAACC-CC
17092 AAACTCCC
1 AAAC-CCC
*
17100 ACACCCC
1 AAACCCC
17107 AAA-CCC
1 AAACCCC
17113 -AACCCC
1 AAACCCC
*
17119 AATCCCC
1 AAACCCC
17126 AAA-CCC
1 AAACCCC
17132 ATAACCCGC
1 A-AACCC-C
17141 AAACCCC
1 AAACCCC
*
17148 AAAACCC
1 AAACCCC
17155 AAACCCC
1 AAACCCC
17162 AAAAACCCTC
1 --AAACCC-C
17172 -AACCCC
1 AAACCCC
17178 AAAACCCC
1 -AAACCCC
*
17186 AAAACCCT
1 -AAACCCC
17194 AAA-CCC
1 AAACCCC
* *
17200 TAACCCG
1 AAACCCC
*
17207 AAA-CCG
1 AAACCCC
*
17213 AAACCCG
1 AAACCCC
* *
17220 ACACCCG
1 AAACCCC
*
17227 AAACCCG
1 AAACCCC
*
17234 AAACCCG
1 AAACCCC
*
17241 AAAACCC
1 AAACCCC
* *
17248 GAACCCG
1 AAACCCC
*
17255 AAA-CCG
1 AAACCCC
* *
17261 AAAACCG
1 AAACCCC
*
17268 AAACCCT
1 AAACCCC
*
17275 AAA-CCG
1 AAACCCC
17281 AAA-CCC
1 AAACCCC
* *
17287 GAA-CCG
1 AAACCCC
*
17293 AAACCCG
1 AAACCCC
*
17300 AAACCCT
1 AAACCCC
*
17307 AAAACCC
1 AAACCCC
* *
17314 GAACCCG
1 AAACCCC
*
17321 AAACCCG
1 AAACCCC
17328 AAACCCC
1 AAACCCC
* *
17335 TCAACCCGG
1 -AAACCC-C
*
17344 AAACCCG
1 AAACCCC
**
17351 AAACCAG
1 AAACCCC
*
17358 AAA--CG
1 AAACCCC
*
17363 AAAACCC
1 AAACCCC
*
17370 GAACCCGTC
1 AAACCC--C
*
17379 -AACCCG
1 AAACCCC
17385 AAA-CCC
1 AAACCCC
* *
17391 GAACCCT
1 AAACCCC
*
17398 AAACCCG
1 AAACCCC
*
17405 AAAACCC
1 AAACCCC
* *
17412 GAACCCG
1 AAACCCC
*
17419 AAA-ACC
1 AAACCCC
* *
17425 GAACCCG
1 AAACCCC
*
17432 AAACCCG
1 AAACCCC
*
17439 AAA-CCG
1 AAACCCC
*
17445 AAACCCG
1 AAACCCC
*
17452 AAACCCT
1 AAACCCC
**
17459 AAACCGT
1 AAACCCC
*
17466 AAA-CCG
1 AAACCCC
*
17472 AAACCCGA
1 AAACCC-C
*
17480 AAACCCG
1 AAACCCC
17487 AAACCCGC
1 AAACCC-C
17495 --A-CCC
1 AAACCCC
*
17499 GAACTCCGC
1 AAAC-CC-C
*
17508 -AACCCG
1 AAACCCC
*
17514 AAACCCAA
1 AAACCC-C
*
17522 AAACCCG
1 AAACCCC
*
17529 AAACCCTG
1 AAACCC-C
* *
17537 AAAACCG
1 AAACCCC
*
17544 AAACCCT
1 AAACCCC
**
17551 AAACACTG
1 AAAC-CCC
*
17559 AAACCCG
1 AAACCCC
*
17566 AAAACCC
1 AAACCCC
** *
17573 GCA-CCG
1 AAACCCC
*
17579 AAACCCT
1 AAACCCC
17586 AAA-CCC
1 AAACCCC
17592 AAA-CCC
1 AAACCCC
*
17598 TAACCCC
1 AAACCCC
17605 TAAAACCCTTC
1 --AAACCC--C
17616 -AA-CCC
1 AAACCCC
*
17621 TAACCCTC
1 AAACCC-C
17629 -AACCCTC
1 AAACCC-C
*
17636 -AA-CCT
1 AAACCCC
17641 AAACCCCC
1 AAA-CCCC
*
17649 AACCCCC
1 AAACCCC
17656 AAACCCC
1 AAACCCC
17663 -AACCCC
1 AAACCCC
17669 AAACCCC
1 AAACCCC
17676 AAA-CCC
1 AAACCCC
17682 AAA-CCC
1 AAACCCC
17688 AAACCCC
1 AAACCCC
17695 AAAACCCC
1 -AAACCCC
*
17703 CAACCCC
1 AAACCCC
17710 TAAA-CCC
1 -AAACCCC
*
17717 ACACCCCTTC
1 A-AACCC--C
17727 AAACCCC
1 AAACCCC
17734 AAAAACCCC
1 --AAACCCC
*
17743 TAACCCC
1 AAACCCC
17750 AAACCCC
1 AAACCCC
17757 AAA-CCC
1 AAACCCC
*
17763 TAACCCC
1 AAACCCC
*
17770 TAACCCC
1 AAACCCC
*
17777 TAAACCCTT
1 -AAACCC-C
*
17786 AAACCCTT
1 AAACCC-C
*
17794 AAACCCT
1 AAACCCC
17801 AAA-CCC
1 AAACCCC
* *
17807 TAACCCT
1 AAACCCC
*
17814 AAACCCT
1 AAACCCC
*
17821 AAACCCT
1 AAACCCC
*
17828 AAACCCT
1 AAACCCC
*
17835 AAACCCT
1 AAACCCC
*
17842 AAACCCT
1 AAACCCC
*
17849 AAACCCT
1 AAACCCC
*
17856 AAACCCT
1 AAACCCC
17863 AAA-CCC
1 AAACCCC
* *
17869 TAACCCT
1 AAACCCC
*
17876 AAACCCT
1 AAACCCC
*
17883 AAACCCTA
1 AAACCC-C
*
17891 AAACCCT
1 AAACCCC
*
17898 AAACCCT
1 AAACCCC
*
17905 AAACCCT
1 AAACCCC
*
17912 AAACCCT
1 AAACCCC
*
17919 AAACCCT
1 AAACCCC
*
17926 AAACCCT
1 AAACCCC
*
17933 AAACCCT
1 AAACCCC
*
17940 AAACCCT
1 AAACCCC
17947 AAA-CCC
1 AAACCCC
*
17953 TAACCCC
1 AAACCCC
*
17960 TAACCCC
1 AAACCCC
*
17967 TAACCCC
1 AAACCCC
*
17974 TAACCCC
1 AAACCCC
*
17981 TAACCCC
1 AAACCCC
*
17988 TAACCCC
1 AAACCCC
*
17995 TAA-CCC
1 AAACCCC
*
18001 TAACCCC
1 AAACCCC
*
18008 TAACCCC
1 AAACCCC
18015 TAAACCCC
1 -AAACCCC
*
18023 TAAACCCT
1 -AAACCCC
*
18031 AAACCCT
1 AAACCCC
*
18038 AAACCCT
1 AAACCCC
*
18045 AAACCCT
1 AAACCCC
*
18052 AAACCCT
1 AAACCCC
*
18059 AAACCCT
1 AAACCCC
*
18066 AAACCCT
1 AAACCCC
*
18073 AAACCCT
1 AAACCCC
*
18080 AAACCCT
1 AAACCCC
*
18087 AAACCCT
1 AAACCCC
*
18094 AAACCCT
1 AAACCCC
*
18101 AAACCCT
1 AAACCCC
18108 AAA-CCC
1 AAACCCC
18114 AAACCAACCC
1 AAA-C--CCC
*
18124 GAACCCC
1 AAACCCC
*
18131 GAACCCC
1 AAACCCC
*
18138 GAA-CCC
1 AAACCCC
18144 -AA-CCC
1 AAACCCC
*
18149 GAACCCC
1 AAACCCC
*
18156 GAACCCC
1 AAACCCC
*
18163 GAACCCC
1 AAACCCC
*
18170 GAACCCC
1 AAACCCC
18177 GAAACCCC
1 -AAACCCC
*
18185 GAA-CCC
1 AAACCCC
*
18191 GAA-CCC
1 AAACCCC
*
18197 GAA-CCC
1 AAACCCC
*
18203 GAACCCC
1 AAACCCC
*
18210 GAACCCC
1 AAACCCC
*
18217 GAACCCC
1 AAACCCC
*
18224 GAACCCC
1 AAACCCC
*
18231 GAACCCC
1 AAACCCC
*
18238 GAACCCC
1 AAACCCC
*
18245 GAACCCC
1 AAACCCC
*
18252 GAACCCC
1 AAACCCC
*
18259 GAACCCC
1 AAACCCC
*
18266 GAACCCC
1 AAACCCC
*
18273 GAA-CCC
1 AAACCCC
*
18279 GAACCCC
1 AAACCCC
*
18286 GAACCCC
1 AAACCCC
18293 GACAA-CCC
1 -A-AACCCC
*
18301 GAACCCC
1 AAACCCC
*
18308 GAACCCACC
1 -AAACC-CC
*
18317 GAACCCC
1 AAACCCC
*
18324 GAACCGACCC
1 -AAAC--CCC
*
18334 GAA-CCC
1 AAACCCC
*
18340 GAACCCC
1 AAACCCC
* *
18347 GAATCCC
1 AAACCCC
* *
18354 GAACCCTA
1 AAACCC-C
18362 AAACCCC
1 AAACCCC
18369 GAAACCCC
1 -AAACCCC
*
18377 AAAACCC
1 AAACCCC
* *
18384 GAACCTC
1 AAACCCC
* *
18391 GAACCCTA
1 AAACCC-C
18399 AAACCCC
1 AAACCCC
18406 AAACCCC
1 AAACCCC
* *
18413 GAACCCTA
1 AAACCC-C
18421 AAACCCC
1 AAACCCC
*
18428 GAACCCC
1 AAACCCC
*
18435 GAACCCC
1 AAACCCC
*
18442 GAAACCTC
1 -AAACCCC
*
18450 GAACCCC
1 AAACCCC
*
18457 GAACCCC
1 AAACCCC
*
18464 GAACCCC
1 AAACCCC
* *
18471 GAACCCT
1 AAACCCC
**
18478 GGACCCC
1 AAACCCC
*
18485 AGACCCC
1 AAACCCC
*
18492 AGACCCC
1 AAACCCC
*
18499 AGACCCC
1 AAACCCC
*
18506 AGACCCC
1 AAACCCC
*
18513 AGACCCC
1 AAACCCC
*
18520 GAA-CCC
1 AAACCCC
*
18526 GAACCCC
1 AAACCCC
*
18533 GAACCCC
1 AAACCCC
18540 AAACCCC
1 AAACCCC
*
18547 -CACCCC
1 AAACCCC
*
18553 GAACCCC
1 AAACCCC
18560 AAACCCC
1 AAACCCC
*
18567 CAACCCC
1 AAACCCC
*
18574 AAATCCC
1 AAACCCC
*
18581 AAACCCT
1 AAACCCC
18588 AAACCCC
1 AAACCCC
* *
18595 AAATCCT
1 AAACCCC
18602 AAACCCC
1 AAACCCC
18609 AAACCCC
1 AAACCCC
*
18616 AAACCCT
1 AAACCCC
18623 AAA-CCC
1 AAACCCC
* *
18629 -TACCCT
1 AAACCCC
* *
18635 TAACCTC
1 AAACCCC
*
18642 GAACCCC
1 AAACCCC
18649 AAACCCC
1 AAACCCC
*
18656 GAACCCC
1 AAACCCC
*
18663 GAACCCCC
1 -AAACCCC
* *
18671 GAACCTC
1 AAACCCC
*
18678 GAACCCC
1 AAACCCC
*
18685 GAACCCC
1 AAACCCC
*
18692 GAA-CCC
1 AAACCCC
18698 AAACCCC
1 AAACCCC
*
18705 CAACCCC
1 AAACCCC
*
18712 CAACCCC
1 AAACCCC
18719 AAACCCC
1 AAACCCC
*
18726 CAACCCC
1 AAACCCC
*
18733 CAACCCC
1 AAACCCC
*
18740 TAACCCC
1 AAACCCC
*
18747 AACCCCCC
1 AA-ACCCC
*
18755 AAATCCC
1 AAACCCC
18762 AAACCCC
1 AAACCCC
**
18769 AAACCATT
1 AAACC-CC
18777 AAACCCTC
1 AAACCC-C
18785 -AA-CCC
1 AAACCCC
* *
18790 TAACCCTT
1 AAACCC-C
18798 AAACCCC
1 AAACCCC
*
18805 AAACCTC
1 AAACCCC
*
18812 AAACCCT
1 AAACCCC
18819 AAACCCC
1 AAACCCC
18826 AAAC
1 AAAC
18830 TTTAAGCCTA
Statistics
Matches: 1616, Mismatches: 225, Indels: 261
0.77 0.11 0.12
Matches are distributed among these distances:
4 1 0.00
5 25 0.02
6 206 0.13
7 1076 0.67
8 236 0.15
9 51 0.03
10 15 0.01
11 6 0.00
ACGTcount: A:0.38, C:0.49, G:0.06, T:0.06
Consensus pattern (7 bp):
AAACCCC
Found at i:21055 original size:12 final size:12
Alignment explanation
Indices: 21038--21063 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
21028 GGGGGAAAGT
21038 TAGCATTTTGTG
1 TAGCATTTTGTG
21050 TAGCATTTTGTG
1 TAGCATTTTGTG
21062 TA
1 TA
21064 TTAACTTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.08, G:0.23, T:0.50
Consensus pattern (12 bp):
TAGCATTTTGTG
Found at i:32543 original size:13 final size:13
Alignment explanation
Indices: 32525--32550 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32515 CAAATTTTTG
32525 TGTATCGATACAT
1 TGTATCGATACAT
32538 TGTATCGATACAT
1 TGTATCGATACAT
32551 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:32615 original size:21 final size:21
Alignment explanation
Indices: 32589--32664 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
32579 CTGCCAAGAA
32589 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
32610 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
32630 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
32651 ATGTATCGATACAT
1 ATGTATCGATACAT
32665 TGCAACATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:32634 original size:20 final size:20
Alignment explanation
Indices: 32609--32682 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
32599 ACATCTTTTT
32609 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
32629 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
32650 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
32670 CATGTATCGATAC
1 CATGTATCGATAC
32683 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:32646 original size:41 final size:41
Alignment explanation
Indices: 32589--32682 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
32579 CTGCCAAGAA
32589 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
32630 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
32671 ATGTATCGATAC
1 ATGTATCGATAC
32683 TTTGAATTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:35151 original size:13 final size:13
Alignment explanation
Indices: 35133--35171 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
35123 ATAATCACCC
*
35133 TGTATCGATACAG
1 TGTATCGATACAA
35146 TGTATCGATACAA
1 TGTATCGATACAA
35159 TGTATCGATACAA
1 TGTATCGATACAA
35172 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:35182 original size:20 final size:20
Alignment explanation
Indices: 35157--35235 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
35147 GTATCGATAC
35157 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
35177 AATGTATCGATACATAGAATTTTCA
1 AATGTATCGATACAAAGAA-----A
* *
35202 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
35222 CATGTATCGATACA
1 AATGTATCGATACA
35236 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.27
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:39104 original size:21 final size:21
Alignment explanation
Indices: 39075--39119 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
39065 AAGTTTTCAT
*
39075 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
39095 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
39117 TTT
1 TTT
39120 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:41351 original size:13 final size:13
Alignment explanation
Indices: 41333--41358 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
41323 CAATTTTTTG
41333 TGTATCGATACAT
1 TGTATCGATACAT
41346 TGTATCGATACAT
1 TGTATCGATACAT
41359 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:41423 original size:21 final size:21
Alignment explanation
Indices: 41397--41472 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
41387 CTGCCAAGAA
41397 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
41418 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
41438 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
41459 ATGTATCGATACAT
1 ATGTATCGATACAT
41473 TGCAACATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:41442 original size:20 final size:20
Alignment explanation
Indices: 41417--41490 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
41407 ACATCTTTTT
41417 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
41437 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
41458 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
41478 CATGTATCGATAC
1 CATGTATCGATAC
41491 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:41454 original size:41 final size:41
Alignment explanation
Indices: 41397--41490 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
41387 CTGCCAAGAA
41397 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
41438 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
41479 ATGTATCGATAC
1 ATGTATCGATAC
41491 TTTGAATTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:43731 original size:37 final size:37
Alignment explanation
Indices: 43635--43841 Score: 155
Period size: 37 Copynumber: 5.6 Consensus size: 37
43625 GGCATAGGTT
* * *
43635 AAAACAAAAACCATTATTCTAATCCGGTGACATGGTTC
1 AAAACAAAAACCACTATTCTTA-CCGGTGACATGGGTC
* *
43673 AGAAC-AAAACCACTATTCTTACCGGTGCCATGGGTC
1 AAAACAAAAACCACTATTCTTACCGGTGACATGGGTC
* * * * *
43709 AAAACAAAAACCACTATCCTTACTGGTGGCACGAGTC
1 AAAACAAAAACCACTATTCTTACCGGTGACATGGGTC
* * * * ** *
43746 GAAACAAAAACTATTATTCTTACCGATGACACCGTTC
1 AAAACAAAAACCACTATTCTTACCGGTGACATGGGTC
** * * * * **
43783 GGAACAAAAATCACTTTTCTTACCGATGGCACAGGTC
1 AAAACAAAAACCACTATTCTTACCGGTGACATGGGTC
* *
43820 GAAACAAAAATCACTATTCTTA
1 AAAACAAAAACCACTATTCTTA
43842 ACTGGTGGCA
Statistics
Matches: 137, Mismatches: 31, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
36 17 0.12
37 116 0.85
38 4 0.03
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.24
Consensus pattern (37 bp):
AAAACAAAAACCACTATTCTTACCGGTGACATGGGTC
Found at i:43756 original size:74 final size:74
Alignment explanation
Indices: 43678--43841 Score: 177
Period size: 74 Copynumber: 2.2 Consensus size: 74
43668 GGTTCAGAAC
* * ** * *
43678 AAAACCACTATTCTTACCGGTGCCATGGGTCAAAACAAAAACCACTATCCTTACTGGTGGCAC-G
1 AAAACCACTATTCTTACCGATGACACCGGTCAAAACAAAAACCACTATCCTTACCGATGGCACAG
43742 AGTCGAAACA
66 -GTCGAAACA
* * * ** * * *
43752 AAAACTATTATTCTTACCGATGACACCGTTCGGAACAAAAATCACTTTTCTTACCGATGGCACAG
1 AAAACCACTATTCTTACCGATGACACCGGTCAAAACAAAAACCACTATCCTTACCGATGGCACAG
43817 GTCGAAACA
66 GTCGAAACA
*
43826 AAAATCACTATTCTTA
1 AAAACCACTATTCTTA
43842 ACTGGTGGCA
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
74 71 0.99
75 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (74 bp):
AAAACCACTATTCTTACCGATGACACCGGTCAAAACAAAAACCACTATCCTTACCGATGGCACAG
GTCGAAACA
Found at i:43803 original size:111 final size:112
Alignment explanation
Indices: 43636--43851 Score: 274
Period size: 111 Copynumber: 1.9 Consensus size: 112
43626 GCATAGGTTA
* ** *
43636 AAACAAAAACCATTATTCTAATCCGGTGACATGGTTCAGAACAAAACCACTATTCTTACCGGTGC
1 AAACAAAAACCATTATTCTAATCCGATGACACCGTTCAGAACAAAACCACTATTCTTACCGATGC
**
43701 CATGGGTCAAAACAAAAACCACTATCCTT-ACTGGTGGCACGAGTCG
66 CACAGGTCAAAACAAAAACCACTATCCTTAACTGGTGGCACGAGTCG
* * * * *
43747 AAACAAAAACTATTATTCTTA-CCGATGACACCGTTCGGAACAAAAATCACTTTTCTTACCGATG
1 AAACAAAAACCATTATTCTAATCCGATGACACCGTTCAGAAC-AAAACCACTATTCTTACCGATG
* * * *
43811 GCACAGGTCGAAACAAAAATCACTATTCTTAACTGGTGGCA
65 CCACAGGTCAAAACAAAAACCACTATCCTTAACTGGTGGCA
43852 TAATTGAAAC
Statistics
Matches: 88, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
110 16 0.18
111 62 0.70
112 10 0.11
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (112 bp):
AAACAAAAACCATTATTCTAATCCGATGACACCGTTCAGAACAAAACCACTATTCTTACCGATGC
CACAGGTCAAAACAAAAACCACTATCCTTAACTGGTGGCACGAGTCG
Found at i:44016 original size:16 final size:16
Alignment explanation
Indices: 43995--44029 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
43985 ACAAAAATAA
43995 AAATCACA-TATTTCAC
1 AAATCACATTATTT-AC
44011 AAATCACATTATTTAC
1 AAATCACATTATTTAC
44027 AAA
1 AAA
44030 GCAATTGTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.49, C:0.20, G:0.00, T:0.31
Consensus pattern (16 bp):
AAATCACATTATTTAC
Found at i:46493 original size:2 final size:2
Alignment explanation
Indices: 46480--46518 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
46470 CATGCTTTAG
*
46480 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
46519 GAGAGAGAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:46523 original size:2 final size:2
Alignment explanation
Indices: 46518--46545 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
46508 ATATATATAT
46518 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
46546 CATTATTGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:49461 original size:2 final size:2
Alignment explanation
Indices: 49444--49476 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
49434 AGGGACATGT
*
49444 TA TA AA TA TA -A TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
49477 AACATAATCG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:53717 original size:23 final size:21
Alignment explanation
Indices: 53699--53741 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
53689 AATTAAAGAT
*
53699 AATCAAATATTATTTTTAAAA
1 AATCAAAAATTATTTTTAAAA
*
53720 AATTAAAAATTATTTTTAAAA
1 AATCAAAAATTATTTTTAAAA
53741 A
1 A
53742 TTTTAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (21 bp):
AATCAAAAATTATTTTTAAAA
Found at i:53733 original size:21 final size:22
Alignment explanation
Indices: 53707--53751 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
53697 ATAATCAAAT
53707 ATTATTTTTAAAAA-ATTAAAA
1 ATTATTTTTAAAAATATTAAAA
*
53728 ATTATTTTTAAAAATTTTAAAA
1 ATTATTTTTAAAAATATTAAAA
53750 AT
1 AT
53752 AAAATATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
ATTATTTTTAAAAATATTAAAA
Found at i:58009 original size:20 final size:18
Alignment explanation
Indices: 57976--58014 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
57966 ATGAAAACAC
57976 AAAATAAAACTTAATAGAA
1 AAAATAAAACTTAAT-GAA
*
57995 AAAATAAAAAGTTAATGAA
1 AAAAT-AAAACTTAATGAA
58014 A
1 A
58015 TAATGATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.69, C:0.03, G:0.08, T:0.21
Consensus pattern (18 bp):
AAAATAAAACTTAATGAA
Found at i:59149 original size:2 final size:2
Alignment explanation
Indices: 59142--59180 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
59132 CCTCTAAAAT
*
59142 TA TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
59181 TTGTTGAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:61090 original size:3 final size:3
Alignment explanation
Indices: 61082--61108 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
61072 TAACTTTTAT
61082 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
61109 TTAACGAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:61153 original size:2 final size:2
Alignment explanation
Indices: 61146--61189 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
61136 TAAATTTAGC
61146 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
61188 AT
1 AT
61190 TCCATCCTCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62972 original size:27 final size:27
Alignment explanation
Indices: 62942--63002 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
62932 GCACAGATAA
* * *
62942 TTTGGCACAGGTACCTAGCATAAGTAT
1 TTTGACACAAGTACCTAGCACAAGTAT
* *
62969 TTTGACATAAGTACCTGGCACAAGTAT
1 TTTGACACAAGTACCTAGCACAAGTAT
62996 TTTGACA
1 TTTGACA
63003 TAGATACTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (27 bp):
TTTGACACAAGTACCTAGCACAAGTAT
Found at i:63003 original size:27 final size:27
Alignment explanation
Indices: 62952--63004 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
62942 TTTGGCACAG
*
62952 GTACCTAGCATAAGTATTTTGACATAA
1 GTACCTAGCACAAGTATTTTGACATAA
*
62979 GTACCTGGCACAAGTATTTTGACATA
1 GTACCTAGCACAAGTATTTTGACATA
63005 GATACTTTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (27 bp):
GTACCTAGCACAAGTATTTTGACATAA
Found at i:65770 original size:6 final size:6
Alignment explanation
Indices: 65759--65788 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
65749 TGTTGAATAA
*
65759 GAAGAT GAAGAT AAAGAT GAAGAT GAAGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
65789 AGACAAAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.30, T:0.17
Consensus pattern (6 bp):
GAAGAT
Found at i:69958 original size:2 final size:2
Alignment explanation
Indices: 69953--69985 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
69943 CTCTATTATT
69953 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
69986 ACTTAAGAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:70729 original size:2 final size:2
Alignment explanation
Indices: 70722--70762 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
70712 ACACGTTAGT
70722 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
70763 CTGTTGCATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:70801 original size:2 final size:2
Alignment explanation
Indices: 70796--70829 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
70786 TATCTGTTGC
70796 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
70830 TTTATTCTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74471 original size:99 final size:99
Alignment explanation
Indices: 74296--74481 Score: 264
Period size: 99 Copynumber: 1.9 Consensus size: 99
74286 TATGTATTAT
* * *
74296 TGAAAATCATAGCACCGAAACTCATTAGCTATTAAATTGGAAAGTCAATGTTAAACATCAGATCT
1 TGAAAATCATAGCACCGAAACTCATTAACTATTAAATTCGAAAGTCAATGTTAAACATCAAATCT
*
74361 TAAGATGTTTACATGTCTGCTACTAGTATGCTAG
66 TAAGATATTTACATGTCTGCTACTAGTATGCTAG
* * * * *
74395 TGAAAATCATAGCATCGGAACTCATTAATTATTAAATTCGAAAGTCCATGTTAAACTTCAAATCT
1 TGAAAATCATAGCACCGAAACTCATTAACTATTAAATTCGAAAGTCAATGTTAAACATCAAATCT
* * *
74460 TAAGGTATTTACCTTTCTGCTA
66 TAAGATATTTACATGTCTGCTA
74482 TTAGCGTGTT
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
99 75 1.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (99 bp):
TGAAAATCATAGCACCGAAACTCATTAACTATTAAATTCGAAAGTCAATGTTAAACATCAAATCT
TAAGATATTTACATGTCTGCTACTAGTATGCTAG
Found at i:75387 original size:37 final size:37
Alignment explanation
Indices: 75322--75421 Score: 121
Period size: 37 Copynumber: 2.7 Consensus size: 37
75312 GGGTTGGAAT
* * * *
75322 AAAAATCACTATTTTTACCGGTGACACGGGTCGAAA-C
1 AAAAATTACTATTTTTATCGGTGGCACGGGTC-AAAGA
* *
75359 AAAAATTACTATTCTTATCGATGGCACGGGTCAAAGA
1 AAAAATTACTATTTTTATCGGTGGCACGGGTCAAAGA
*
75396 AAAAATTATTATTTTTATCGGTGGCA
1 AAAAATTACTATTTTTATCGGTGGCA
75422 TAGTTGAAAC
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
36 3 0.06
37 50 0.94
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (37 bp):
AAAAATTACTATTTTTATCGGTGGCACGGGTCAAAGA
Found at i:78524 original size:7 final size:6
Alignment explanation
Indices: 78490--78534 Score: 72
Period size: 6 Copynumber: 7.2 Consensus size: 6
78480 AGAACTCAAA
78490 GTCAGG GTCAGG GTCAGG GTCAGG GTCAGGG GTCAGGG GTCAGG G
1 GTCAGG GTCAGG GTCAGG GTCAGG GTCA-GG GTCA-GG GTCAGG G
78535 CTCACATAGC
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 25 0.66
7 13 0.34
ACGTcount: A:0.16, C:0.16, G:0.53, T:0.16
Consensus pattern (6 bp):
GTCAGG
Found at i:85241 original size:16 final size:19
Alignment explanation
Indices: 85206--85242 Score: 53
Period size: 16 Copynumber: 2.1 Consensus size: 19
85196 GAAAACGCTA
85206 AAGAAAGAGATGTCAAAGG
1 AAGAAAGAGATGTCAAAGG
85225 AAGAAA-AGAT-T-AAAGG
1 AAGAAAGAGATGTCAAAGG
85241 AA
1 AA
85243 ATAAGTTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.39
17 1 0.06
18 4 0.22
19 6 0.33
ACGTcount: A:0.59, C:0.03, G:0.27, T:0.11
Consensus pattern (19 bp):
AAGAAAGAGATGTCAAAGG
Found at i:87096 original size:2 final size:2
Alignment explanation
Indices: 87089--87119 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
87079 CTTAAAATGT
*
87089 TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
87120 TGTATATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:89742 original size:5 final size:5
Alignment explanation
Indices: 89734--89758 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
89724 ATTTCTTCAC
89734 GGGAA GGGAA GGGAA GGGAA GGGAA
1 GGGAA GGGAA GGGAA GGGAA GGGAA
89759 CTTGGAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (5 bp):
GGGAA
Found at i:93971 original size:18 final size:18
Alignment explanation
Indices: 93948--93987 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
93938 TGTCAGCATC
93948 ATCATCGTCTGCATCATT
1 ATCATCGTCTGCATCATT
* **
93966 ATCATCTTCTTTATCATT
1 ATCATCGTCTGCATCATT
93984 ATCA
1 ATCA
93988 GCCGTAGTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.25, C:0.25, G:0.05, T:0.45
Consensus pattern (18 bp):
ATCATCGTCTGCATCATT
Found at i:102993 original size:6 final size:6
Alignment explanation
Indices: 102982--103020 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
102972 AGGAGGTGCC
* *
102982 ATTTGT ATTTGT ATTTGT ATTTGG ATTTGT -GTTGT ATTT
1 ATTTGT ATTTGT ATTTGT ATTTGT ATTTGT ATTTGT ATTT
103021 ATCAGGTTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 4 0.14
6 24 0.86
ACGTcount: A:0.15, C:0.00, G:0.21, T:0.64
Consensus pattern (6 bp):
ATTTGT
Found at i:107812 original size:14 final size:14
Alignment explanation
Indices: 107795--107823 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
107785 ATATCATGTA
107795 TTATAATATGAGAG
1 TTATAATATGAGAG
107809 TTATAATATGAGAG
1 TTATAATATGAGAG
107823 T
1 T
107824 GAGTATCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (14 bp):
TTATAATATGAGAG
Found at i:109174 original size:2 final size:2
Alignment explanation
Indices: 109167--109203 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
109157 AATCTTTAAA
109167 AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
109204 GTGTGTGTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:109745 original size:13 final size:13
Alignment explanation
Indices: 109729--109753 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
109719 TTAATGATTT
109729 TTTATTAAATAAG
1 TTTATTAAATAAG
109742 TTTATTAAATAA
1 TTTATTAAATAA
109754 TCTTTATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (13 bp):
TTTATTAAATAAG
Found at i:109902 original size:29 final size:29
Alignment explanation
Indices: 109818--109902 Score: 70
Period size: 29 Copynumber: 3.0 Consensus size: 29
109808 CTTTAAATGA
* * *
109818 TATTTTTATTAATATTAACTATTTATA-AT
1 TATTTTTATTAATATTAA-AATTTGTATTT
* *
109847 TA-TGTT-TTGATATTGAAAA-TTGTTATTT
1 TATTTTTATTAATATT-AAAATTTG-TATTT
109875 TATTTTTATTAATATTAAAATTTGTATT
1 TATTTTTATTAATATTAAAATTTGTATT
109903 AAAAATTTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 12
0.69 0.11 0.19
Matches are distributed among these distances:
26 2 0.05
27 10 0.23
28 8 0.19
29 13 0.30
30 10 0.23
ACGTcount: A:0.34, C:0.01, G:0.06, T:0.59
Consensus pattern (29 bp):
TATTTTTATTAATATTAAAATTTGTATTT
Found at i:110919 original size:10 final size:10
Alignment explanation
Indices: 110906--110930 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
110896 TAATTATTAA
110906 TTTTATAATT
1 TTTTATAATT
110916 TTTTATAATT
1 TTTTATAATT
110926 TTTTA
1 TTTTA
110931 ATTATAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTTATAATT
Found at i:111177 original size:11 final size:11
Alignment explanation
Indices: 111143--111187 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
111133 TGAAAATGGT
111143 TAAAAAATA-A
1 TAAAAAATATA
* * *
111153 GAAAAAAAAGA
1 TAAAAAATATA
111164 TAAAAAATATA
1 TAAAAAATATA
111175 TAAAAAATATA
1 TAAAAAATATA
111186 TA
1 TA
111188 TTTGATATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
10 7 0.24
11 22 0.76
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (11 bp):
TAAAAAATATA
Found at i:112348 original size:14 final size:15
Alignment explanation
Indices: 112329--112368 Score: 52
Period size: 13 Copynumber: 2.9 Consensus size: 15
112319 ATTTTATAAT
112329 TAAAAAATAT-AAAG
1 TAAAAAATATAAAAG
112343 TAAAAAA-ATAAAAG
1 TAAAAAATATAAAAG
112357 -AAAAAATA-AAAA
1 TAAAAAATATAAAA
112369 TATATAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.15
Consensus pattern (15 bp):
TAAAAAATATAAAAG
Found at i:112360 original size:12 final size:13
Alignment explanation
Indices: 112330--112367 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 13
112320 TTTTATAATT
112330 AAAAAATATAAAGTA
1 AAAAAATA-AAAG-A
112345 AAAAAATAAAAG-
1 AAAAAATAAAAGA
112357 AAAAAATAAAA
1 AAAAAATAAAA
112368 ATATATAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 11 0.48
14 4 0.17
15 8 0.35
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.13
Consensus pattern (13 bp):
AAAAAATAAAAGA
Found at i:114449 original size:5 final size:5
Alignment explanation
Indices: 114439--114464 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
114429 TATATCTTGC
114439 ATTGT ATTGT ATTGT ATTGT ATTGT A
1 ATTGT ATTGT ATTGT ATTGT ATTGT A
114465 ATCCTAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.19, T:0.58
Consensus pattern (5 bp):
ATTGT
Found at i:114940 original size:5 final size:5
Alignment explanation
Indices: 114926--114960 Score: 63
Period size: 5 Copynumber: 7.2 Consensus size: 5
114916 TTTAGGTTTT
114926 ATAT- ATATG ATATG ATATG ATATG ATATG ATATG A
1 ATATG ATATG ATATG ATATG ATATG ATATG ATATG A
114961 GGTAATGAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.13
5 26 0.87
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (5 bp):
ATATG
Found at i:117350 original size:6 final size:6
Alignment explanation
Indices: 117325--117396 Score: 63
Period size: 6 Copynumber: 12.0 Consensus size: 6
117315 GTTTGAAACC
* * * * * * * *
117325 TATGAA GATGGA TGTGAA TATGAA TATGAA CATGAA CATTAA CATTAA
1 TATGAA TATGAA TATGAA TATGAA TATGAA TATGAA TATGAA TATGAA
*
117373 CATGAA TATGAA TATGAA TATGAA
1 TATGAA TATGAA TATGAA TATGAA
117397 GATAAAGATG
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 56 1.00
ACGTcount: A:0.47, C:0.06, G:0.18, T:0.29
Consensus pattern (6 bp):
TATGAA
Found at i:117360 original size:18 final size:18
Alignment explanation
Indices: 117339--117396 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
117329 AAGATGGATG
117339 TGAATATGAATATGAACA
1 TGAATATGAATATGAACA
* * * *
117357 TGAACATTAACATTAACA
1 TGAATATGAATATGAACA
*
117375 TGAATATGAATATGAATA
1 TGAATATGAATATGAACA
117393 TGAA
1 TGAA
117397 GATAAAGATG
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (18 bp):
TGAATATGAATATGAACA
Found at i:123010 original size:2 final size:2
Alignment explanation
Indices: 123003--123040 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
122993 AATATGTTAC
123003 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
123041 GAACCAATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:124079 original size:3 final size:3
Alignment explanation
Indices: 124071--124112 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
124061 TATAATTGAC
124071 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
124113 TCGAAACAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:124532 original size:4 final size:4
Alignment explanation
Indices: 124523--124556 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
124513 TTTGCATTGT
124523 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT
124557 CTTATATAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:124710 original size:2 final size:2
Alignment explanation
Indices: 124703--124736 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
124693 ACCAGATGGA
124703 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
124737 TAATTTTCTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:124787 original size:2 final size:2
Alignment explanation
Indices: 124774--124812 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
124764 GATTTGCGTC
*
124774 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
124813 ATCGATTTGC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:129802 original size:2 final size:2
Alignment explanation
Indices: 129789--129822 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
129779 TTTAAGATGT
*
129789 TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
129823 CACACACAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:134609 original size:2 final size:2
Alignment explanation
Indices: 134602--134639 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
134592 TTCTCCCTGC
134602 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
134640 TCAAAACTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:137848 original size:4 final size:4
Alignment explanation
Indices: 137839--137888 Score: 82
Period size: 4 Copynumber: 12.2 Consensus size: 4
137829 GTAGTAGCAG
*
137839 ATGT ATGT ATGT ATGT ATGT ATGT AAGT ATGT ATGT ATGT ATGT AATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT -ATGT
137888 A
1 A
137889 CCTGAATGGA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
4 39 0.91
5 4 0.09
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.46
Consensus pattern (4 bp):
ATGT
Found at i:139383 original size:5 final size:5
Alignment explanation
Indices: 139373--139398 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
139363 AAACAAGTAC
139373 TTGGA TTGGA TTGGA TTGGA TTGGA T
1 TTGGA TTGGA TTGGA TTGGA TTGGA T
139399 ATATATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.38, T:0.42
Consensus pattern (5 bp):
TTGGA
Found at i:139424 original size:2 final size:2
Alignment explanation
Indices: 139419--139450 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
139409 ATATATATAT
139419 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
139451 TAATTAAACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:148649 original size:2 final size:2
Alignment explanation
Indices: 148642--148680 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
148632 ACTCAATTAA
148642 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
148681 AACTTAATGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:149355 original size:4 final size:4
Alignment explanation
Indices: 149346--149370 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
149336 TAAAAGACGT
149346 AAGA AAGA AAGA AAGA AAGA AAGA A
1 AAGA AAGA AAGA AAGA AAGA AAGA A
149371 GAATGAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:150821 original size:20 final size:21
Alignment explanation
Indices: 150783--150821 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
150773 ATTTAAATAA
150783 AAAATAAATTTTTATGATTTT
1 AAAATAAATTTTTATGATTTT
*
150804 AAAATTAATTTTTA-GATT
1 AAAATAAATTTTTATGATT
150822 CAATAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (21 bp):
AAAATAAATTTTTATGATTTT
Found at i:154046 original size:2 final size:2
Alignment explanation
Indices: 154039--154073 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
154029 GTATTATAAA
154039 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
154074 AAGAGGTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:154998 original size:2 final size:2
Alignment explanation
Indices: 154982--155019 Score: 60
Period size: 2 Copynumber: 19.0 Consensus size: 2
154972 AAAGAGCATA
154982 AT AT AT CAT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
155020 GTTTGTATCT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 1 0.03
2 31 0.91
3 2 0.06
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:163211 original size:4 final size:4
Alignment explanation
Indices: 163204--163234 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
163194 ATATATATAA
163204 TATT TATT TATT TATT TATT TATT TATT TAT
1 TATT TATT TATT TATT TATT TATT TATT TAT
163235 AACAAAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:165998 original size:5 final size:5
Alignment explanation
Indices: 165988--166020 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
165978 CTTGTCCAAG
165988 AAACA AAACA AAACA AAACA AAAC- AAACA AAAC
1 AAACA AAACA AAACA AAACA AAACA AAACA AAAC
166021 CATCATTAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.79, C:0.21, G:0.00, T:0.00
Consensus pattern (5 bp):
AAACA
Found at i:166008 original size:15 final size:14
Alignment explanation
Indices: 165988--166020 Score: 57
Period size: 14 Copynumber: 2.3 Consensus size: 14
165978 CTTGTCCAAG
165988 AAACAAAACAAAACA
1 AAACAAAAC-AAACA
166003 AAACAAAACAAACA
1 AAACAAAACAAACA
166017 AAAC
1 AAAC
166021 CATCATTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.79, C:0.21, G:0.00, T:0.00
Consensus pattern (14 bp):
AAACAAAACAAACA
Found at i:166258 original size:3 final size:3
Alignment explanation
Indices: 166244--166285 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
166234 ATTGCTTTAA
*
166244 TAT TAT TGT TAT TATT TAT T-T T-T TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT T
166286 GTGGTTTGTG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 4 0.11
3 28 0.80
4 3 0.09
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (3 bp):
TAT
Found at i:166612 original size:13 final size:13
Alignment explanation
Indices: 166594--166620 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
166584 AGATATAGCG
166594 TATGCATTTAACA
1 TATGCATTTAACA
166607 TATGCATTTAACA
1 TATGCATTTAACA
166620 T
1 T
166621 TTAGCTTCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (13 bp):
TATGCATTTAACA
Found at i:170074 original size:12 final size:12
Alignment explanation
Indices: 170057--170081 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
170047 TCCCTTAATA
170057 AAAATCAATATC
1 AAAATCAATATC
170069 AAAATCAATATC
1 AAAATCAATATC
170081 A
1 A
170082 CTGCCAAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAATCAATATC
Found at i:171211 original size:2 final size:2
Alignment explanation
Indices: 171204--171229 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
171194 AAGTTATCAC
171204 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
171230 GGGAAAGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:173302 original size:16 final size:16
Alignment explanation
Indices: 173272--173341 Score: 54
Period size: 16 Copynumber: 4.2 Consensus size: 16
173262 GTTTCTTTTT
*
173272 TTTTTTCAATTTATTAA
1 TTTTTT-AATATATTAA
173289 TTTTTTAATATATTATA
1 TTTTTTAATATATTA-A
*
173306 TATTTTTTATATCATT-A
1 T-TTTTTAATAT-ATTAA
* *
173323 TTTTATAA-ATATAAA
1 TTTTTTAATATATTAA
173338 TTTT
1 TTTT
173342 ACAATTAATT
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
14 2 0.05
15 7 0.16
16 13 0.30
17 10 0.23
18 9 0.20
19 3 0.07
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (16 bp):
TTTTTTAATATATTAA
Found at i:173304 original size:19 final size:20
Alignment explanation
Indices: 173282--173324 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
173272 TTTTTTCAAT
173282 TTATTA-ATTTTTTAATAT-A
1 TTATTATATTTTTT-ATATCA
173301 TTA-TATATTTTTTATATCA
1 TTATTATATTTTTTATATCA
173320 TTATT
1 TTATT
173325 TTATAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 6 0.29
19 14 0.67
20 1 0.05
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (20 bp):
TTATTATATTTTTTATATCA
Found at i:173928 original size:14 final size:14
Alignment explanation
Indices: 173909--173947 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
173899 CGGTGTGCGC
173909 ATATATATATACAT
1 ATATATATATACAT
*
173923 ATATATTTATACAT
1 ATATATATATACAT
*
173937 ATATATGTATA
1 ATATATATATA
173948 GGGATGACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (14 bp):
ATATATATATACAT
Found at i:174479 original size:16 final size:16
Alignment explanation
Indices: 174456--174490 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
174446 AAACATAAAG
174456 ATATATATATATATATAC
1 ATATAT-TA-ATATATAC
174474 ATATATTAATATATAC
1 ATATATTAATATATAC
174490 A
1 A
174491 GCCAGATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 2 0.12
18 6 0.35
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (16 bp):
ATATATTAATATATAC
Found at i:177017 original size:46 final size:46
Alignment explanation
Indices: 176950--177041 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
176940 AGAGTGGTAG
176950 CACAGAGTCACCTTCGAGAAGAGGTCACGAATTCAAAGCTGAAGGA
1 CACAGAGTCACCTTCGAGAAGAGGTCACGAATTCAAAGCTGAAGGA
176996 CACAGAGTCACCTTCGAGAAGAGGTCACGAATTCAAAGCTGAAGGA
1 CACAGAGTCACCTTCGAGAAGAGGTCACGAATTCAAAGCTGAAGGA
177042 TTAAATATAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.37, C:0.22, G:0.26, T:0.15
Consensus pattern (46 bp):
CACAGAGTCACCTTCGAGAAGAGGTCACGAATTCAAAGCTGAAGGA
Found at i:179187 original size:18 final size:18
Alignment explanation
Indices: 179138--179192 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
179128 AAGAGAGTAA
179138 AAATTGATTAAAATTAATT
1 AAATTGATT-AAATTAATT
* * **
179157 TAATTAAAAAAATTAATT
1 AAATTGATTAAATTAATT
*
179175 AAATTGATTAAATAAATT
1 AAATTGATTAAATTAATT
179193 TGATTAATTT
Statistics
Matches: 27, Mismatches: 9, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
18 22 0.81
19 5 0.19
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (18 bp):
AAATTGATTAAATTAATT
Found at i:179290 original size:22 final size:22
Alignment explanation
Indices: 179264--179318 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
179254 GATTTTTAAT
179264 TATTAAAATATGAAATCGAATA
1 TATTAAAATATGAAATCGAATA
* **
179286 TATTAAAATAATTAAATTTAATA
1 TATTAAAAT-ATGAAATCGAATA
179309 T-TTAAAATAT
1 TATTAAAATAT
179319 TTAAAATATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.07
22 16 0.55
23 11 0.38
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.40
Consensus pattern (22 bp):
TATTAAAATATGAAATCGAATA
Found at i:179322 original size:22 final size:22
Alignment explanation
Indices: 179282--179367 Score: 79
Period size: 22 Copynumber: 3.9 Consensus size: 22
179272 TATGAAATCG
*
179282 AATATATTAAAATAATTAAATTT
1 AATAT-TTAAAATATTTAAATTT
*
179305 AATATTTAAAATATTTAAA-AT
1 AATATTTAAAATATTTAAATTT
* *
179326 -ATATTTAATAAAATATAAATTT
1 AATATTTAA-AATATTTAAATTT
*
179348 AA-ATTTAAATTCATTTAAAT
1 AATATTTAAAAT-ATTTAAAT
179368 CTAAACTAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
20 8 0.16
21 10 0.20
22 27 0.53
23 6 0.12
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (22 bp):
AATATTTAAAATATTTAAATTT
Found at i:179364 original size:43 final size:41
Alignment explanation
Indices: 179282--179366 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 41
179272 TATGAAATCG
179282 AATATATTAAAATAATTAAATTTAATATTTAAAATATTTAA
1 AATATATTAAAATAATTAAATTTAATATTTAAAATATTTAA
*
179323 AATATATTTAATAA-AATATAAATTTAA-ATTTAAATTCATTTAA
1 AATATA-TTAA-AATAAT-TAAATTTAATATTTAAAAT-ATTTAA
179366 A
1 A
179367 TCTAAACTAA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
41 6 0.15
42 15 0.38
43 18 0.46
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (41 bp):
AATATATTAAAATAATTAAATTTAATATTTAAAATATTTAA
Found at i:179404 original size:22 final size:23
Alignment explanation
Indices: 179341--179404 Score: 69
Period size: 22 Copynumber: 2.8 Consensus size: 23
179331 TAATAAAATA
* *
179341 TAAATTTAAATTTAAA-TTCATT
1 TAAATATAAATTAAAACTTCATT
* *
179363 TAAATCTAAACTAAAAACTT-ATT
1 TAAATATAAA-TTAAAACTTCATT
179386 TAAATATAAATTAAAACTT
1 TAAATATAAATTAAAACTT
179405 TTAGAGGTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 17 0.49
23 16 0.46
24 2 0.06
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.41
Consensus pattern (23 bp):
TAAATATAAATTAAAACTTCATT
Found at i:184301 original size:2 final size:2
Alignment explanation
Indices: 184259--184287 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
184249 TATATTCGCC
184259 GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
184288 GGCACGTGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (2 bp):
GT
Found at i:190279 original size:23 final size:22
Alignment explanation
Indices: 190253--190299 Score: 85
Period size: 23 Copynumber: 2.1 Consensus size: 22
190243 TATGTTATTG
190253 ATTTATTTAAATATAAATTAAAA
1 ATTTATTTAAATATAAA-TAAAA
190276 ATTTATTTAAATATAAATAAAA
1 ATTTATTTAAATATAAATAAAA
190298 AT
1 AT
190300 ATAAAAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 7 0.29
23 17 0.71
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTTATTTAAATATAAATAAAA
Found at i:190570 original size:2 final size:2
Alignment explanation
Indices: 190565--190612 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
190555 CACATAATAC
190565 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
190607 AG AT AT
1 AT AT AT
190613 GTATGCAAGT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:191653 original size:2 final size:2
Alignment explanation
Indices: 191648--191676 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
191638 TCAATTATGT
191648 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
191677 ATATATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:197432 original size:4 final size:4
Alignment explanation
Indices: 197423--197451 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
197413 TTTTGAGGGC
197423 TATT TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT T
197452 TCTTGTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:203138 original size:46 final size:44
Alignment explanation
Indices: 203010--203237 Score: 348
Period size: 45 Copynumber: 5.0 Consensus size: 44
203000 AAACACCTTC
203010 CCAGAATCTGTTCTATTCAGCCTTCATTGCTGAATTTTTTTCTTT
1 CCAGAATCTGTT-TATTCAGCCTTCATTGCTGAATTTTTTTCTTT
*
203055 TCAGAATCTGTGTTATTCAGCCTTCATTGCTGAATTTTTTTCTTT
1 CCAGAATCTGT-TTATTCAGCCTTCATTGCTGAATTTTTTTCTTT
203100 CCAGAATCTGTTCTATTCAGCCTTCATTGCTGGAATTTTTTTCTTT
1 CCAGAATCTGTT-TATTCAGCCTTCATTGCT-GAATTTTTTTCTTT
203146 CCAGAATCTGTGTTATTCAGCCTTCATTGCTGAATTTTTTTTTTCTTT
1 CCAGAATCTGT-TTATTCAGCCTTCATTGCTGAA---TTTTTTTCTTT
*
203194 GCAGAATCTGTTTTATTCAGCCTTCATTGCTAGAATTTTTTTCT
1 CCAGAATCTG-TTTATTCAGCCTTCATTGCT-GAATTTTTTTCT
203238 CTACTTCCTT
Statistics
Matches: 171, Mismatches: 3, Indels: 17
0.90 0.02 0.09
Matches are distributed among these distances:
44 1 0.01
45 73 0.43
46 53 0.31
47 1 0.01
48 39 0.23
49 4 0.02
ACGTcount: A:0.18, C:0.20, G:0.13, T:0.50
Consensus pattern (44 bp):
CCAGAATCTGTTTATTCAGCCTTCATTGCTGAATTTTTTTCTTT
Found at i:203170 original size:91 final size:91
Alignment explanation
Indices: 203010--203237 Score: 386
Period size: 94 Copynumber: 2.5 Consensus size: 91
203000 AAACACCTTC
*
203010 CCAGAATCTGTTCTATTCAGCCTTCATTGCTGAATTTTTTTCTTTTCAGAATCTGTGTTATTCAG
1 CCAGAATCTGTTCTATTCAGCCTTCATTGCTGAATTTTTTTCTTTCCAGAATCTGTGTTATTCAG
203075 CCTTCATTGCTGAA-TTTTTTTCTTT
66 CCTTCATTGCTGAATTTTTTTTCTTT
203100 CCAGAATCTGTTCTATTCAGCCTTCATTGCTGGAATTTTTTTCTTTCCAGAATCTGTGTTATTCA
1 CCAGAATCTGTTCTATTCAGCCTTCATTGCT-GAATTTTTTTCTTTCCAGAATCTGTGTTATTCA
203165 GCCTTCATTGCTGAATTTTTTTTTTCTTT
65 GCCTTCATTGCTGAA--TTTTTTTTCTTT
* *
203194 GCAGAATCTGTTTTATTCAGCCTTCATTGCTAGAATTTTTTTCT
1 CCAGAATCTGTTCTATTCAGCCTTCATTGCT-GAATTTTTTTCT
203238 CTACTTCCTT
Statistics
Matches: 130, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
90 31 0.24
91 47 0.36
94 52 0.40
ACGTcount: A:0.18, C:0.20, G:0.13, T:0.50
Consensus pattern (91 bp):
CCAGAATCTGTTCTATTCAGCCTTCATTGCTGAATTTTTTTCTTTCCAGAATCTGTGTTATTCAG
CCTTCATTGCTGAATTTTTTTTCTTT
Found at i:207852 original size:44 final size:44
Alignment explanation
Indices: 207789--207900 Score: 181
Period size: 44 Copynumber: 2.5 Consensus size: 44
207779 ATCTTTGAAA
*
207789 AATCAGATCCTACAATTTAGGCTAGAAGTCAAATACAGCTGTAT
1 AATCAGATCCTACAATTTAGGCTAAAAGTCAAATACAGCTGTAT
* *
207833 AATCAGATCCTACAATTTAGGTTAAAAGTCAACTACAGCTGTAT
1 AATCAGATCCTACAATTTAGGCTAAAAGTCAAATACAGCTGTAT
207877 AATC-GTATCCTACAATTTAGGCTA
1 AATCAG-ATCCTACAATTTAGGCTA
207901 TTAATTAGGA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
43 1 0.02
44 62 0.98
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (44 bp):
AATCAGATCCTACAATTTAGGCTAAAAGTCAAATACAGCTGTAT
Found at i:208032 original size:20 final size:20
Alignment explanation
Indices: 208007--208070 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
207997 TGTTCTGATT
208007 TTTTTCTTTCTTCATAATCA
1 TTTTTCTTTCTTCATAATCA
* *
208027 TTTTTC-ATCAGTTC-TGAT--
1 TTTTTCTTTC--TTCATAATCA
208045 TTTTTCTTTCTTCATAATCA
1 TTTTTCTTTCTTCATAATCA
208065 TTTTTC
1 TTTTTC
208071 ATCAGTTCTG
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
17 3 0.09
18 9 0.26
19 4 0.12
20 15 0.44
21 3 0.09
ACGTcount: A:0.17, C:0.19, G:0.03, T:0.61
Consensus pattern (20 bp):
TTTTTCTTTCTTCATAATCA
Found at i:208048 original size:38 final size:38
Alignment explanation
Indices: 207985--208097 Score: 201
Period size: 38 Copynumber: 3.0 Consensus size: 38
207975 AAAAATTCTG
*
207985 ATCA-TTTTCATCTGTTCTGATTTTTTTCTTTCTTCATA
1 ATCATTTTTCATCAGTTCTGA-TTTTTTCTTTCTTCATA
208023 ATCATTTTTCATCAGTTCTGATTTTTTCTTTCTTCATA
1 ATCATTTTTCATCAGTTCTGATTTTTTCTTTCTTCATA
208061 ATCATTTTTCATCAGTTCTGATTTTTTCTTTCTTCAT
1 ATCATTTTTCATCAGTTCTGATTTTTTCTTTCTTCAT
208098 GCTTTACTAC
Statistics
Matches: 73, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
38 58 0.79
39 15 0.21
ACGTcount: A:0.17, C:0.19, G:0.05, T:0.59
Consensus pattern (38 bp):
ATCATTTTTCATCAGTTCTGATTTTTTCTTTCTTCATA
Found at i:208050 original size:18 final size:18
Alignment explanation
Indices: 208027--208088 Score: 56
Period size: 18 Copynumber: 3.3 Consensus size: 18
208017 TTCATAATCA
208027 TTTTTCATCAGTTCTGAT
1 TTTTTCATCAGTTCTGAT
* *
208045 TTTTTCTTTC--TTCATAAT
1 TTTTTC-ATCAGTTC-TGAT
208063 CATTTTTCATCAGTTCTGAT
1 --TTTTTCATCAGTTCTGAT
208083 TTTTTC
1 TTTTTC
208089 TTTCTTCATG
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
17 3 0.09
18 15 0.44
19 4 0.12
20 9 0.26
21 3 0.09
ACGTcount: A:0.16, C:0.18, G:0.06, T:0.60
Consensus pattern (18 bp):
TTTTTCATCAGTTCTGAT
Found at i:212540 original size:6 final size:6
Alignment explanation
Indices: 212529--212553 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
212519 TTGTCGTCGT
212529 CTTCGC CTTCGC CTTCGC CTTCGC C
1 CTTCGC CTTCGC CTTCGC CTTCGC C
212554 GGTTTGATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.52, G:0.16, T:0.32
Consensus pattern (6 bp):
CTTCGC
Found at i:213188 original size:2 final size:2
Alignment explanation
Indices: 213181--213208 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
213171 ATTCCAAGCA
213181 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
213209 TCAACGCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:232204 original size:20 final size:21
Alignment explanation
Indices: 232169--232207 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
232159 ACCCTTTAAT
232169 ATTTTTATTTTATTTAAATAA
1 ATTTTTATTTTATTTAAATAA
232190 ATTTTTATTTT-TTTAAAT
1 ATTTTTATTTTATTTAAAT
232208 CATTTTCGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (21 bp):
ATTTTTATTTTATTTAAATAA
Found at i:236280 original size:12 final size:13
Alignment explanation
Indices: 236265--236294 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
236255 AATTAAATAA
236265 AAATATAATAT-T
1 AAATATAATATGT
236277 AAATATAATATGT
1 AAATATAATATGT
236290 AAATA
1 AAATA
236295 ATTTTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (13 bp):
AAATATAATATGT
Found at i:236847 original size:2 final size:2
Alignment explanation
Indices: 236840--236867 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
236830 AAATATGTGC
236840 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
236868 TGAAAACGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:238445 original size:2 final size:2
Alignment explanation
Indices: 238429--238465 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
238419 GAATGTTTAG
*
238429 TA TA -A TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
238466 ATGCAAGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:238616 original size:19 final size:17
Alignment explanation
Indices: 238584--238618 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
238574 CGAATTTGAA
238584 TAATTTTTTTTAAATTT
1 TAATTTTTTTTAAATTT
238601 TAATTTATTATTTAAATT
1 TAATTT-TT-TTTAAATT
238619 ATTATTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 2 0.12
19 8 0.50
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TAATTTTTTTTAAATTT
Found at i:238627 original size:13 final size:13
Alignment explanation
Indices: 238597--238629 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
238587 TTTTTTTTAA
*
238597 ATTTTAATTTATT
1 ATTTTAAATTATT
238610 A-TTTAAATTATT
1 ATTTTAAATTATT
238622 ATTTTAAA
1 ATTTTAAA
238630 AAATAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
ATTTTAAATTATT
Found at i:238672 original size:34 final size:34
Alignment explanation
Indices: 238603--238673 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
238593 TTAAATTTTA
* *
238603 ATTTATTATTTAAATTATTATTTTAAAAAATAAT
1 ATTTATTATTTAAATTATAATTATAAAAAATAAT
* *
238637 ATTTTTTATTTAAATT-TAATTATAAAATATAAAT
1 ATTTATTATTTAAATTATAATTATAAAAAAT-AAT
238671 ATT
1 ATT
238674 AAAATAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 11 0.34
34 21 0.66
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (34 bp):
ATTTATTATTTAAATTATAATTATAAAAAATAAT
Done.