Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold633
Parameters: 2 7 7 80 10 50 1000
Length:  82281

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6392--6441
20
2.5
20
83
3
66
32
14
18
36
1.90
15794--15849
18
2.9
19
81
7
78
42
12
12
32
1.80
15794--15899
20
4.9
20
71
23
81
41
12
16
29
1.85
17247--17334
44
2.0
44
93
0
149
40
23
23
11
1.87
18584--18611
13
2.2
13
100
0
56
60
0
0
39
0.97
21791--21833
20
2.2
20
100
0
86
30
20
13
34
1.92
23214--23458
97
2.5
98
76
7
250
30
24
10
35
1.88
25702--25771
33
2.1
34
89
2
106
74
0
21
4
0.99
25702--25767
16
4.1
15
72
16
53
74
0
22
3
0.96
25709--25767
15
3.7
15
73
20
57
72
0
23
3
0.99
25880--25904
11
2.3
11
100
0
50
16
0
0
84
0.63
25801--26321
281
1.9
279
82
6
669
37
7
5
49
1.55
27561--27593
16
2.1
16
100
0
66
39
12
12
36
1.80
30008--30125
34
3.4
34
88
2
164
37
35
3
23
1.72
30093--30148
22
2.5
22
94
0
94
37
35
3
23
1.72
34794--34877
34
2.4
34
92
2
132
36
34
3
25
1.73
34843--34922
22
3.6
23
88
5
119
36
32
3
27
1.75
36063--36096
6
5.7
6
92
0
59
38
17
0
44
1.49
36129--36386
141
1.8
141
91
0
426
34
20
17
27
1.95
41589--41638
20
2.5
20
93
0
82
34
8
10
48
1.66
44007--44203
97
2.0
97
80
3
218
26
18
13
41
1.88
45709--45884
90
2.0
90
94
0
307
35
18
14
31
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50330--50402
20
3.7
19
87
7
85
28
15
17
38
1.90
50452--50476
13
1.9
13
100
0
50
36
16
16
32
1.90
50432--50496
33
2.0
32
88
11
96
32
15
18
33
1.92
52071--52104
3
11.3
3
93
0
59
35
0
35
29
1.58
56266--56373
20
5.8
20
77
16
106
29
16
12
41
1.84
56284--56353
33
2.1
33
97
0
131
28
18
12
40
1.88
56266--56373
53
2.0
53
87
3
155
29
16
12
41
1.84
56304--56334
13
2.4
13
100
0
62
29
16
16
38
1.90
58680--58998
51
6.3
51
73
6
209
28
24
12
35
1.91
58680--58997
102
3.1
101
89
1
456
28
23
12
35
1.91
58989--59057
28
2.5
27
83
9
77
24
34
14
26
1.94
59150--59266
51
2.3
51
86
0
162
33
28
10
28
1.90
59150--59527
132
2.9
132
87
2
503
28
24
13
33
1.93
61614--61642
4
7.2
4
100
0
58
24
0
0
75
0.80
71793--72020
97
2.3
97
77
6
239
30
24
10
34
1.90
73080--73121
15
3.0
15
86
10
54
26
4
0
69
1.08
74172--74241
33
2.1
34
89
2
106
74
0
21
4
0.99
74172--74237
16
4.1
15
72
16
53
74
0
22
3
0.96
74179--74237
15
3.7
15
73
20
57
72
0
23
3
0.99
76015--76045
16
1.9
16
100
0
62
38
9
12
38
1.77
78487--78604
34
3.4
34
89
2
164
36
34
4
24
1.75
78572--78627
22
2.5
22
91
0
85
37
33
3
25
1.73

Tables:   1

The End!