Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold635
Parameters: 2 7 7 80 10 50 1000
Length:  97374

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4732--4772
11
3.5
11
81
12
55
2
19
0
78
0.87
4732--4786
24
2.3
22
77
17
56
9
20
0
70
1.13
5127--5173
23
2.0
23
83
4
58
17
17
14
51
1.77
6215--6258
21
2.1
21
83
8
54
25
31
4
38
1.76
10146--10176
15
2.1
15
93
0
53
12
22
16
48
1.80
11980--12024
21
2.1
21
88
8
65
22
17
4
55
1.60
14241--14266
13
2.0
13
100
0
52
30
15
15
38
1.88
17048--17122
20
3.8
20
76
0
69
40
13
13
33
1.83
17045--17122
40
2.0
39
84
2
102
39
14
12
33
1.84
17403--17473
20
3.6
19
84
7
81
30
16
15
36
1.90
17505--17557
20
2.7
20
88
5
72
33
13
20
32
1.91
23725--23749
13
1.9
13
100
0
50
36
16
16
32
1.90
25601--25661
18
3.2
18
77
18
61
39
3
27
29
1.72
26234--26258
13
1.9
13
100
0
50
36
16
16
32
1.90
26213--26277
33
2.0
32
87
3
94
30
16
15
36
1.90
26247--26297
20
2.6
19
87
3
66
33
15
15
35
1.90
27544--27624
41
2.0
41
83
7
103
41
0
0
58
0.98
28530--28564
2
18.0
2
88
5
54
51
0
0
48
1.00
29475--29503
15
1.9
15
100
0
58
27
0
3
68
1.05
38173--38206
17
2.0
17
88
0
50
70
0
17
11
1.16
38606--38653
21
2.3
21
78
7
53
33
0
8
58
1.28
39082--39128
17
2.8
17
75
12
51
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48698--48747
23
2.3
23
82
6
59
54
6
2
38
1.37
49276--49311
17
2.1
17
89
0
54
0
16
0
83
0.65
50556--51094
32
16.8
32
94
1
893
16
18
33
30
1.94
51077--51815
27
27.1
27
90
4
1146
27
14
35
22
1.93
51080--51815
164
4.5
163
92
3
1169
27
14
35
22
1.93
52836--52865
15
2.0
15
100
0
60
0
0
13
86
0.57
59601--59630
10
3.0
10
95
0
51
0
13
0
86
0.57
59602--59636
16
2.1
17
89
5
54
0
17
0
82
0.66
68580--68605
3
8.7
3
100
0
52
65
0
0
34
0.93
69888--69946
14
4.0
14
75
16
57
50
0
1
47
1.11
69888--69949
15
4.1
15
80
10
65
51
0
1
46
1.10
69895--69959
14
4.4
14
79
9
51
50
0
1
47
1.10
71962--72006
22
2.0
22
82
4
54
26
13
6
53
1.64
80527--80584
27
2.2
27
93
3
100
31
17
17
34
1.93
80526--80575
13
3.8
13
89
5
82
34
16
16
34
1.90
80628--80700
20
3.7
19
88
3
92
36
19
16
27
1.93
81757--81792
19
1.9
19
88
5
56
52
11
8
27
1.65
82321--82406
2
43.0
2
71
13
61
47
4
5
41
1.48
91208--91803
300
2.0
296
93
1
1005
39
13
17
29
1.88

Tables:   1

The End!