genome.fa.s637.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold637
Parameters: 2 7 7 80 10 50 1000
Length:  64799

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
519--561	21	2.1	20	82	4	50	32	16	11	39	1.84
1359--1429	19	3.6	19	74	7	79	32	18	12	36	1.88
1378--1450	21	3.6	21	75	7	87	28	16	13	41	1.87
1362--1451	40	2.2	40	96	0	162	32	17	12	37	1.87
2100--2496	49	8.4	49	70	13	201	32	17	25	24	1.97
2225--2484	136	2.0	130	82	4	313	31	19	23	25	1.98
2513--2953	28	15.5	29	79	5	139	20	15	30	33	1.94
2496--2976	57	8.4	57	88	3	632	20	16	29	33	1.95
4400--4473	14	5.2	14	72	15	53	2	5	12	79	1.00
4401--4486	11	7.5	11	73	17	59	2	5	10	81	0.95
4401--4486	27	3.1	26	76	11	73	2	5	10	81	0.95
19573--19639	33	2.0	33	85	5	91	32	14	13	38	1.86
20137--20598	89	5.2	89	85	2	586	27	25	16	29	1.97
20952--21411	41	11.4	40	68	13	217	19	24	14	41	1.89
20901--21411	81	6.3	81	81	3	562	19	24	14	41	1.89
20901--21411	243	2.1	243	87	1	711	19	24	14	41	1.89
21838--22239	42	9.5	42	67	16	172	18	22	12	45	1.84
21593--22408	85	9.9	85	77	12	646	18	22	13	46	1.83
22189--22329	70	2.0	70	88	2	212	18	23	14	43	1.87
22104--22406	155	2.0	154	84	4	405	18	22	14	43	1.87
23428--23851	168	2.6	167	81	7	454	31	10	7	50	1.63
25903--26123	118	1.9	118	83	1	291	21	14	19	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26010--26499	145	3.3	145	76	8	438	24	15	18	41	1.89
26520--26820	150	2.0	150	82	3	365	26	20	18	33	1.96
28295--28346	27	2.0	27	85	10	74	55	5	5	32	1.47
28650--28678	15	1.9	15	100	0	58	41	10	13	34	1.79
31070--31108	3	13.7	3	84	10	55	28	2	0	69	1.02
31975--32013	19	2.1	19	85	9	53	0	17	0	82	0.68
31977--32025	23	2.2	22	88	3	71	0	22	0	77	0.77
31986--32025	13	3.0	13	88	3	53	0	22	0	77	0.77
32596--33097	164	3.1	165	83	5	538	49	8	11	30	1.68
34642--34667	13	2.0	13	100	0	52	38	15	15	30	1.88
58042--58095	21	2.7	20	77	8	65	35	14	12	37	1.85
58039--58095	19	2.9	19	76	7	69	33	14	12	40	1.83
60883--60908	13	2.0	13	100	0	52	30	15	15	38	1.88
61602--61645	21	2.1	21	83	8	54	25	31	4	38	1.76
61793--61839	21	2.2	20	82	14	51	57	14	10	17	1.65
63450--63475	13	2.0	13	100	0	52	30	23	15	30	1.95

Tables:   1

The End!