Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold639
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 281924
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
File 1 of 2
Found at i:14550 original size:52 final size:52
Alignment explanation
Indices: 14480--14600 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
14470 GAAAATTTAT
*
14480 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
14532 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
14584 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
14601 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:14613 original size:52 final size:51
Alignment explanation
Indices: 14480--14620 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
14470 GAAAATTTAT
14480 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
14532 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
14584 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
14621 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:14627 original size:13 final size:13
Alignment explanation
Indices: 14609--14633 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14599 CAAAGATCAG
14609 TGTATCGATACAA
1 TGTATCGATACAA
14622 TGTATCGATACA
1 TGTATCGATACA
14634 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:14718 original size:13 final size:13
Alignment explanation
Indices: 14700--14724 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14690 CAAAAAAATA
14700 TGTATCGATACAT
1 TGTATCGATACAT
14713 TGTATCGATACA
1 TGTATCGATACA
14725 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:14720 original size:33 final size:33
Alignment explanation
Indices: 14678--14744 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
14668 AGTAGCTTAA
14678 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
14711 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
14744 A
1 A
14745 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:15557 original size:49 final size:49
Alignment explanation
Indices: 15436--16001 Score: 729
Period size: 49 Copynumber: 11.9 Consensus size: 49
15426 TTGGGTTTTA
* *
15436 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
*
15485 -AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* *
15533 AAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* * *
15582 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* * *
15631 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* * *
15680 AAGGTGCCAATATGCTGATTCAAGACTAGCTATATTGGACTT----A--
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* * *
15723 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
*
15772 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
*
15815 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G
* *
15865 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--
1 --AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* * *
15910 AAGGTGCCAATGTGCTGAGTCACGGCCAGCTACATTGGACTTAAAGATG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* * *
15959 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTA
16002 GAAGGGTTGC
Statistics
Matches: 451, Mismatches: 44, Indels: 44
0.84 0.08 0.08
Matches are distributed among these distances:
43 114 0.25
45 2 0.00
47 3 0.01
48 48 0.11
49 245 0.54
52 39 0.09
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
Found at i:15752 original size:92 final size:92
Alignment explanation
Indices: 15433--16006 Score: 871
Period size: 92 Copynumber: 6.1 Consensus size: 92
15423 TCATTGGGTT
* * * *
15433 TTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGT-GAGGTGCCAATGT
1 TTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATAT
*
15497 GCTGATTCAAGGCCAGCTACATTGGAC
66 GCTGATTCAAGGCCAGCTATATTGGAC
*
15524 TTAAAGATGAAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 TT----A--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
15589 CAATATGCTGATTCAAGGCCAGCTATATTGGAC
60 CAATATGCTGATTCAAGGCCAGCTATATTGGAC
15622 TTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 TT-A-----AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
* *
15687 CAATATGCTGATTCAAGACTAGCTATATTGGAC
60 CAATATGCTGATTCAAGGCCAGCTATATTGGAC
15720 TTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATAT
1 TTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATAT
15785 GCTGATTCAAGGCCAGCTATATTGGAC
66 GCTGATTCAAGGCCAGCTATATTGGAC
*
15812 TTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAA
1 TTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT---AAAGGTGCCAA
*
15877 TATGCTGATTCAAGGCCAGCGATATTGGAC
63 TATGCTGATTCAAGGCCAGCTATATTGGAC
* * *
15907 TTAAAGGTGCCAATGTGCTGAGTCACGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATAT
1 TTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATAT
*
15972 GCTGATTCAAGGCCAGCTATATTGGGC
66 GCTGATTCAAGGCCAGCTATATTGGAC
15999 TTAGAAGG
1 TTA-AAGG
16007 GTTGCCACCG
Statistics
Matches: 449, Mismatches: 20, Indels: 26
0.91 0.04 0.05
Matches are distributed among these distances:
91 2 0.00
92 177 0.39
93 4 0.01
95 91 0.20
97 46 0.10
98 129 0.29
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (92 bp):
TTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATAT
GCTGATTCAAGGCCAGCTATATTGGAC
Found at i:16045 original size:33 final size:35
Alignment explanation
Indices: 16001--16070 Score: 126
Period size: 33 Copynumber: 2.1 Consensus size: 35
15991 TATTGGGCTT
16001 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-GGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
16035 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTAGGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
16069 AG
1 AG
16071 GGAGAAAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 26 0.74
34 9 0.26
ACGTcount: A:0.20, C:0.17, G:0.37, T:0.26
Consensus pattern (35 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
Found at i:16113 original size:34 final size:34
Alignment explanation
Indices: 16055--17240 Score: 1178
Period size: 34 Copynumber: 35.4 Consensus size: 34
16045 CACCGACTTG
* * *
16055 TGTGGGCTTTAGGAAGGGAGAAAGATGCCACGGAGT
1 TGTGGGCTTTA--AAAGGAAAAAGGTGCCACGGAGT
*
16091 TGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAA-GGAAAAAG-GTGCCACGGAGT
* *
16126 TGTGGGCTTTAAAAAGAAGAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
16160 TGTGGGCTTT-AAA-G----A-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
*
16187 CGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAA-GGAAAAAG-GTGCCACGGAGT
16224 TGTGGGCTTTAAACA-GAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAA-AGGAAAAAGGTGCCACGGAGT
**
16258 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACATAGT
1 TGTGGGCTTT-AAAA-GGAAAAAG-GTGCCACGGAGT
16295 TGTGGGCTTTAAAA-GAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
* *
16328 TGTAGGCTTTGAAAAGGGAAAAAAAGAGTGCCACAGAGT
1 TGTGGGCTTT-AAAA-GG--AAAAAG-GTGCCACGGAGT
16367 TGTGGGCTTTAAAA-GAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
* *
16400 TGTGGGCTTTAAAAAGAAGAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
16434 TGTGGGCTTT-AAA-G----A-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
*
16461 CGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAAG-GAAAAAG-GTGCCACGGAGT
16498 TGTGGGCTTTAAACA-GAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAA-AGGAAAAAGGTGCCACGGAGT
**
16532 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACATAGT
1 TGTGGGCTTT-AAAA-GGAAAAAG-GTGCCACGGAGT
16569 TGTGGGCTTTAAACA-GAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAA-AGGAAAAAGGTGCCACGGAGT
**
16603 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACATAGT
1 TGTGGGCTTT-AAAA-GGAAAAAG-GTGCCACGGAGT
16640 TGTGGGCTTTAAAA-GAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
* *
16673 TGTAGGCTTTGAAAAGGGAAAAAAAGAGTGCCACAGAGT
1 TGTGGGCTTT-AAAA-GG--AAAAAG-GTGCCACGGAGT
16712 TGTGGGCTTTAAAA-GAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
* *
16745 TGTGGGCTTTAAAAAGAAGAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
16779 TGTGGGCTTT-AAA-G----A-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
* *
16806 CGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACAGAGT
1 TGTGGGCTTT-AAAAG-GAAAAAG-GTGCCACGGAGT
16843 TGTGGGCTTTAAACA-GAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAA-AGGAAAAAGGTGCCACGGAGT
*
16877 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGT
1 TGTGGGCTTT-AAAA-GGAAAAAG-GTGCCACGGAGT
16914 TGTGGGCTTTAAAA-GAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
*
16947 TGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
*
16981 TGTGGGC-TT-AAACG-----GGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
* * * * * *
17008 TGTCGAC-TTAAAGATGAAAAAAGTGCCACAGAAT
1 TGTGGGCTTTAAA-AGGAAAAAGGTGCCACGGAGT
17042 TGTGGGCTTTAAAA-G-----GGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
* * * * *
17070 TGTGGAC-TTAAAGATGAAAAAAGTGCCATGGAAT
1 TGTGGGCTTTAAA-AGGAAAAAGGTGCCACGGAGT
17104 TGTGGGCTTTAAAA-G-----GGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
* * * *
17132 TGTGGAC-TTAAAGATGAAAAAAGTGCCACGGAAT
1 TGTGGGCTTTAAA-AGGAAAAAGGTGCCACGGAGT
17166 TGTGGGCTTTAAAA-G-----GGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
* *
17194 TGTGGAC-TTAAAAGGAACAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
17227 TGTGGGCTTTAAAA
1 TGTGGGCTTTAAAA
17241 AAAAAAATGC
Statistics
Matches: 984, Mismatches: 67, Indels: 200
0.79 0.05 0.16
Matches are distributed among these distances:
27 99 0.10
28 57 0.06
29 13 0.01
31 3 0.00
32 7 0.01
33 148 0.15
34 298 0.30
35 84 0.09
36 68 0.07
37 147 0.15
38 20 0.02
39 40 0.04
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.21
Consensus pattern (34 bp):
TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
Found at i:16130 original size:71 final size:69
Alignment explanation
Indices: 16055--17270 Score: 1250
Period size: 71 Copynumber: 18.2 Consensus size: 69
16045 CACCGACTTG
* * * *
16055 TGTGGGCTTT-AGGAAGGGAGAAAGA-TGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGC
1 TGTGGGCTTTGA-AAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTAAAA--GAAAAAG-GTGC
16118 CACGGAGT
62 CACGGAGT
* * * *
16126 TGTGGGCTTT-AAAA-AGAAGAAG-GTGCCACGGAGTTGTGGGCTTTAAAG----A-GTGCCACG
1 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTAAAAGAAAAAGGTGCCACG
16183 GAGT
66 GAGT
* *
16187 CGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCA
1 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGC-TTAAA-AGAAAAAGGTGCCA
16252 CGGAGT
64 CGGAGT
*
16258 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACATAGTTGTGGGCTTTAAAAGAAAAAGGTGCCAC
1 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGC-TTAAAAGAAAAAGGTGCCAC
16323 GGAGT
65 GGAGT
*
16328 TGTAGGCTTTGAAAAGGGAAAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCC
1 TGTGGGCTTTGAAAAGGG--AAAAAGAGTGCCACAGAGTTGTGGGC-TTAAAAGAAAAAGGTGCC
16393 ACGGAGT
63 ACGGAGT
* * * *
16400 TGTGGGCTTT-AAAA-AGAAGAAG-GTGCCACGGAGTTGTGGGCTTTAAAG----A-GTGCCACG
1 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTAAAAGAAAAAGGTGCCACG
16457 GAGT
66 GAGT
* * *
16461 CGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCA
1 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGC-TTAAA-AGAAAAAGGTGCCA
16526 CGGAGT
64 CGGAGT
*
16532 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACATAGTTGTGGGCTTTAAACAGAAAAAGGTGCCA
1 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGC-TTAAA-AGAAAAAGGTGCCA
16597 CGGAGT
64 CGGAGT
*
16603 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACATAGTTGTGGGCTTTAAAAGAAAAAGGTGCCAC
1 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGC-TTAAAAGAAAAAGGTGCCAC
16668 GGAGT
65 GGAGT
*
16673 TGTAGGCTTTGAAAAGGGAAAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCC
1 TGTGGGCTTTGAAAAGGG--AAAAAGAGTGCCACAGAGTTGTGGGC-TTAAAAGAAAAAGGTGCC
16738 ACGGAGT
63 ACGGAGT
* * * *
16745 TGTGGGCTTT-AAAA-AGAAGAAG-GTGCCACGGAGTTGTGGGCTTTAAAG----A-GTGCCACG
1 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTAAAAGAAAAAGGTGCCACG
16802 GAGT
66 GAGT
* *
16806 CGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCA
1 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGC-TTAAA-AGAAAAAGGTGCCA
16871 CGGAGT
64 CGGAGT
16877 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCAC
1 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGC-TTAAAAGAAAAAGGTGCCAC
16942 GGAGT
65 GGAGT
* * *
16947 TGTGGGCTTT-AAAA-AGAAAAAG-GTGCCACGGAGTTGTGGGCTTAAACG-----GGTGCCACG
1 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTAAAAGAAAAAGGTGCCACG
17004 GAGT
66 GAGT
* * * *
17008 TGTCGAC-TT--AAAGATGAAAAA-AGTGCCACAGAATTGTGGGCTTTAAAAG-----GGTGCCA
1 TGTGGGCTTTGAAAAG-GGAAAAAGAGTGCCACAGAGTTGTGGGC-TTAAAAGAAAAAGGTGCCA
17064 CGGAGT
64 CGGAGT
* * ** *
17070 TGTGGAC-TT--AAAGATGAAAAA-AGTGCCATGGAATTGTGGGCTTTAAAAG-----GGTGCCA
1 TGTGGGCTTTGAAAAG-GGAAAAAGAGTGCCACAGAGTTGTGGGC-TTAAAAGAAAAAGGTGCCA
17126 CGGAGT
64 CGGAGT
* * * *
17132 TGTGGAC-TT--AAAGATGAAAAA-AGTGCCACGGAATTGTGGGCTTTAAAAG-----GGTGCCA
1 TGTGGGCTTTGAAAAG-GGAAAAAGAGTGCCACAGAGTTGTGGGC-TTAAAAGAAAAAGGTGCCA
17188 CGGAGT
64 CGGAGT
* * * **
17194 TGTGGAC-TT-AAAA-GGAACAAG-GTGCCACGGAGTTGTGGGCTTTAAAA-AAAAAAATGCCAC
1 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGC-TTAAAAGAAAAAGGTGCCAC
*
17254 TGAGT
65 GGAGT
* *
17259 CGTGGACTTTGA
1 TGTGGGCTTTGA
17271 GACAAAATGC
Statistics
Matches: 1037, Mismatches: 60, Indels: 100
0.87 0.05 0.08
Matches are distributed among these distances:
59 3 0.00
60 2 0.00
61 134 0.13
62 162 0.16
63 24 0.02
64 56 0.05
65 28 0.03
66 26 0.03
67 56 0.05
68 17 0.02
69 31 0.03
70 111 0.11
71 267 0.26
72 120 0.12
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (69 bp):
TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTAAAAGAAAAAGGTGCCACG
GAGT
Found at i:16526 original size:345 final size:338
Alignment explanation
Indices: 16109--17270 Score: 1636
Period size: 345 Copynumber: 3.5 Consensus size: 338
16099 TAAAAGGGAA
* *
16109 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-AGAAGAAG-GTGCCACGGAGTTGTGGGCTTT-A
1 AAAGAGTGCCACGGAGTCGTGGGCTTTAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
* *
16171 AAGA-GTGCCACGGAGTCGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTA
66 AAGAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTA
16235 AACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACATAGTTGTGG
131 AA-AGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACATAGTTGTGG
16300 GCTTTAAAAGAAAAAGGTGCCACGGAGTTGTAGGCTTTGAAAAGGGAAAAAAAGAGTGCCACAGA
195 GCTTTAAAAGAAAAAGGTGCCACGGAGTTGTAGGCTTTGAAAAGGGAAAAAAAGAGTGCCACAGA
16365 GTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAGAAGGTGCCACG
260 GTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAGAAGGTGCCACG
16430 GAGTTGTGGGCTTT
325 GAGTTGTGGGCTTT
16444 AAAGAGTGCCACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTA
1 AAAGAGTGCCACGGAGTCGTGGGCTTT-AAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTA
*
16509 AACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACATAGTTGTGG
65 AA-AG----AGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGG
16574 GCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACATAG
125 GCTTTAAA-AGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACATAG
16639 TTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTAGGCTTTGAAAAGGGAAAAAAAGAGTGC
189 TTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTAGGCTTTGAAAAGGGAAAAAAAGAGTGC
16704 CACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAGAAGGT
254 CACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAGAAGGT
16769 GCCACGGAGTTGTGGGCTTT
319 GCCACGGAGTTGTGGGCTTT
*
16789 AAAGAGTGCCACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACAGAGTTGTGGGCTTTA
1 AAAGAGTGCCACGGAGTCGTGGGCTTT-AAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTA
16854 AACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGG
65 AA-AG----AGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGG
* **
16919 GCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAA-AGAAAAAG-GTGCCACGGAGT
125 GCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACATAGT
* * * *
16981 TGTGGGC-TTAAACG-----GGTGCCACGGAGTTGTCGAC-TT--AAA--GATGAAAAA-AGTGC
190 TGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTAGGCTTTGAAAAGGGA-AAAAAAGAGTGC
* * * * *
17034 CACAGAATTGTGGGCTTTAAAAG-----GGTGCCACGGAGTTGTGGAC-TTAAAGATGAAAAAAG
254 CACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAA-AAGAAGAAGG
* *
17093 TGCCATGGAATTGTGGGCTTT
318 TGCCACGGAGTTGTGGGCTTT
* * * *
17114 AAAAGGGTGCCACGGAGTTGTGGAC-TT-AAAGATGAAAAA-AGTGCCACGGAATTGTGGGCTTT
1 -AAAGAGTGCCACGGAGTCGTGGGCTTTAAAAGA-GAAAAAGAGTGCCACGGAGTTGTGGGCTTT
* * *
17176 AAAAG-GGTGCCACGGAGTTGTGGAC-TT-AAAA-GGAACAAG-GTGCCACGGAGTTGTGGGCTT
64 AAAAGAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTT
** * * *
17236 TAAAA-AAAAAAATGCCACTGAGTCGTGGACTTTGA
129 TAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGA
17271 GACAAAATGC
Statistics
Matches: 778, Mismatches: 34, Indels: 52
0.90 0.04 0.06
Matches are distributed among these distances:
312 23 0.03
313 26 0.03
314 7 0.01
315 4 0.01
316 2 0.00
317 19 0.02
322 2 0.00
323 29 0.04
324 11 0.01
325 47 0.06
326 21 0.03
330 29 0.04
331 5 0.01
332 3 0.00
334 2 0.00
335 44 0.06
336 4 0.01
337 7 0.01
338 22 0.03
339 2 0.00
340 8 0.01
341 17 0.02
342 7 0.01
343 4 0.01
344 31 0.04
345 402 0.52
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (338 bp):
AAAGAGTGCCACGGAGTCGTGGGCTTTAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
AAGAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTA
AAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACATAGTTGTGGG
CTTTAAAAGAAAAAGGTGCCACGGAGTTGTAGGCTTTGAAAAGGGAAAAAAAGAGTGCCACAGAG
TTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAGAAGGTGCCACGG
AGTTGTGGGCTTT
Found at i:16800 original size:274 final size:270
Alignment explanation
Indices: 16055--17240 Score: 1523
Period size: 274 Copynumber: 4.4 Consensus size: 270
16045 CACCGACTTG
* * * *
16055 TGTGGGCTTT-AGGAAGGGAGAAAGA-TGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAGTG
1 TGTGGGCTTTGA-AAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAA--GAAAAAG-GTG
*
16117 CCACGGAGTTGTGGGCTTTAAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTT-AAAGAGTGCCA
62 CCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGAGTGCCA
*
16181 CGGAGTCGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAG
127 CGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAG---AAG
*
16246 GTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACATAGTTGTGGGCTTTAAAAGA
189 GTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGA
16311 AAAAGGTGCCACGGAGT
254 AAAAGGTGCCACGGAGT
*
16328 TGTAGGCTTTGAAAAGGGAAAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCC
1 TGTGGGCTTTGAAAAGGG--AAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCC
*
16393 ACGGAGTTGTGGGCTTTAAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTT-AAAGAGTGCCACG
64 ACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGAGTGCCACG
16457 GAGTCGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGT
129 GAGTCGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAG---AAGGT
*
16522 GCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACATAGTTGTGGGCTTTAAACAGAA
191 GCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAA-AGAA
16587 AAAGGTGCCACGGAGT
255 AAAGGTGCCACGGAGT
*
16603 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACATAGTTGTGGGCTTTAAAAGAAAAAGGTGCCAC
1 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCAC
* * *
16668 GGAGTTGTAGGCTTTGAAAAGGGAAAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAG
66 GGAGTTGTGGGCTTT-AAAA---AGAAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAG----A-
* *
16733 GTGCCACGGAGTTGTGGGCTTT-AAAA-AGAAGAAG-GTGCCACGGAGTTGTGGGCTTT-AA-AG
121 GTGCCACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAG
* *
16793 -A-GTGCCACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAA
186 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAA
16856 CAGAAAAAGGTGCCACGGAGT
251 -AGAAAAAGGTGCCACGGAGT
16877 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCAC
1 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCAC
* *
16942 GGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGC-TTAAACGGGTGCCACGGA
66 GGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGAGTGCCACGGA
* * * * *
17006 GTTGTCGAC-TT--AAAGATGAAAAA-AGTGCCACAGAATTGTGGGCTTTAAA-AG--GGTGCCA
131 GTCGTGGGCTTTGAAAAGA-GAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAGGTGCCA
* * ** *
17064 CGGAGTTGTGGAC-TT--AAAGATGAAAAA-AGTGCCATGGAATTGTGGGCTTTAAAAG-----G
195 CGGAGTTGTGGGCTTTGAAAAG-GGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAG
17120 GTGCCACGGAGT
259 GTGCCACGGAGT
* * * *
17132 TGTGGAC-TT--AAAGATGAAAAA-AGTGCCACGGAATTGTGGGCTTTAAAAG-----GGTGCCA
1 TGTGGGCTTTGAAAAG-GGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCA
* * *
17188 CGGAGTTGTGGAC-TTAAAAGGAACAAGGTGCCACGGAGTTGTGGGCTTTAAAA
65 CGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAA
17241 AAAAAAATGC
Statistics
Matches: 846, Mismatches: 42, Indels: 76
0.88 0.04 0.08
Matches are distributed among these distances:
246 31 0.04
247 24 0.03
252 30 0.04
253 6 0.01
254 2 0.00
255 19 0.02
260 2 0.00
261 30 0.04
262 9 0.01
263 44 0.05
264 21 0.02
268 6 0.01
269 18 0.02
270 7 0.01
273 78 0.09
274 356 0.42
275 51 0.06
276 16 0.02
277 12 0.01
278 21 0.02
279 6 0.01
280 2 0.00
281 22 0.03
282 7 0.01
283 5 0.01
284 21 0.02
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.21
Consensus pattern (270 bp):
TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCAC
GGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGAGTGCCACGGA
GTCGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAGGTGCCAC
GGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGT
GCCACGGAGT
Found at i:22282 original size:21 final size:21
Alignment explanation
Indices: 22258--22300 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
22248 ATCAAAATGA
22258 CATTCATTGCATGACGAGATG
1 CATTCATTGCATGACGAGATG
22279 CATTCATTGCATGACGAGATG
1 CATTCATTGCATGACGAGATG
22300 C
1 C
22301 TCCTGACATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (21 bp):
CATTCATTGCATGACGAGATG
Found at i:25602 original size:52 final size:52
Alignment explanation
Indices: 25532--25652 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
25522 GAAAATTTAT
*
25532 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
25584 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
25636 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
25653 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:25665 original size:52 final size:51
Alignment explanation
Indices: 25532--25672 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
25522 GAAAATTTAT
25532 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
25584 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
25636 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
25673 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:25679 original size:13 final size:13
Alignment explanation
Indices: 25661--25685 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25651 CAAAGATCAG
25661 TGTATCGATACAA
1 TGTATCGATACAA
25674 TGTATCGATACA
1 TGTATCGATACA
25686 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:25771 original size:13 final size:13
Alignment explanation
Indices: 25753--25777 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25743 CAAAAAAATA
25753 TGTATCGATACAT
1 TGTATCGATACAT
25766 TGTATCGATACA
1 TGTATCGATACA
25778 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:25773 original size:33 final size:33
Alignment explanation
Indices: 25731--25797 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
25721 AGTAGCTTAA
25731 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
25764 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
25797 A
1 A
25798 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:27913 original size:1 final size:1
Alignment explanation
Indices: 27845--27901 Score: 69
Period size: 1 Copynumber: 57.0 Consensus size: 1
27835 CTTCATACCC
* * * * *
27845 AAAAAAAAACAAAAAAAAACAAAAAAAACAAAAAAAATAAAAAAAACAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
27902 CCAAGGAAAA
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.91, C:0.07, G:0.00, T:0.02
Consensus pattern (1 bp):
A
Found at i:27922 original size:10 final size:9
Alignment explanation
Indices: 27846--27899 Score: 90
Period size: 9 Copynumber: 5.9 Consensus size: 9
27836 TTCATACCCA
27846 AAAAAAAAC
1 AAAAAAAAC
27855 AAAAAAAAAC
1 -AAAAAAAAC
27865 AAAAAAAAC
1 AAAAAAAAC
*
27874 AAAAAAAAT
1 AAAAAAAAC
27883 AAAAAAAAC
1 AAAAAAAAC
27892 AAAAAAAA
1 AAAAAAAA
27900 AACCAAGGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
9 33 0.79
10 9 0.21
ACGTcount: A:0.91, C:0.07, G:0.00, T:0.02
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:29184 original size:28 final size:28
Alignment explanation
Indices: 29145--29636 Score: 527
Period size: 28 Copynumber: 17.0 Consensus size: 28
29135 ACATTTGTCT
*
29145 CTTT-AAAGCCCATAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
*
29172 CTTTCAAAGCCCACACGAGTCGGTGGCAACTC
1 CTTTCAAAGCCCACA--AGTCAGTGGC-AC-C
*
29204 TTTTCAAAGCCCACAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
*
29232 CTTTCAAAGCCCACACGAGTCGGTGGCAACTC
1 CTTTCAAAGCCCACA--AGTCAGTGGC-AC-C
* * * *
29264 TTTTCAAAGCCTATAAGTCAGTGGCATC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
*
29292 CTTTCAAAGCCCATAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* * *
29320 TTTTCAAAGCCTACAAGTCAGTGCCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
*
29348 CTTTCAAAGCCCACAAGTCAGTGGCATC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* * *
29376 CTTTCAATGCCCACAAGTTAGTGGCATC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
*
29404 CTTTCAAAGCCCATAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* *
29432 CTTTCAAAGCCCACAAGTTAGTGGCATTC
1 CTTTCAAAGCCCACAAGTCAGTGGCA-CC
* *
29461 CTTTCAAAGCCCACGAGTCGGTGGCAACTC
1 CTTTCAAAGCCCACAAGTCAGTGGC-AC-C
* * * * *
29491 TTTTTAAAGCCCACAAGTTAGTAGCATC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
*
29519 CTTTCAAAGCCTACAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
*
29547 CTTTCAAAGCCCACAAGTCTGTGGCACTC
1 CTTTCAAAGCCCACAAGTCAGTGGCAC-C
* *
29576 TTTTCAAAGCCCACACGAGTCGGTGGCAACTC
1 CTTTCAAAGCCCACA--AGTCAGTGGC-AC-C
* *
29608 TTTTCAAAGCCCATACAAGTTAGTGGCAC
1 CTTTCAAAGCCC--ACAAGTCAGTGGCAC
29637 TTTTTTTTAA
Statistics
Matches: 393, Mismatches: 54, Indels: 32
0.82 0.11 0.07
Matches are distributed among these distances:
27 4 0.01
28 220 0.56
29 42 0.11
30 57 0.15
31 15 0.04
32 52 0.13
34 3 0.01
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (28 bp):
CTTTCAAAGCCCACAAGTCAGTGGCACC
Found at i:31044 original size:20 final size:19
Alignment explanation
Indices: 31015--31089 Score: 96
Period size: 20 Copynumber: 3.8 Consensus size: 19
31005 AAGTACCTAG
31015 ATGTATCGATACACTTTTTA
1 ATGTATCGATACA-TTTTTA
* * *
31035 ATGCATCGATACATGTATGA
1 ATGTATCGATACAT-TTTTA
31055 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTT-A
31075 ATGTATCGATACATT
1 ATGTATCGATACATT
31090 CTATCTTTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
19 3 0.06
20 44 0.94
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (19 bp):
ATGTATCGATACATTTTTA
Found at i:35884 original size:84 final size:84
Alignment explanation
Indices: 35739--35957 Score: 278
Period size: 84 Copynumber: 2.6 Consensus size: 84
35729 ACTAATCTTA
** * * * * *
35739 ACATGTCTACTTTAGGTATTATCTTGTTAAGATAAGCTTATTCACATTGTCTTATTAAGACATGC
1 ACATGTCTACTTTAGACATTATCTTGTTAAGATAACCTTATCCATATTGTCATATTAAGACAAGC
35804 TTATCCATTTTGTC-TGAAC
66 TTATCCATTTTGTCTTG-AC
* * * *
35823 ACATGTTTACTTTAGACATTATCATGTTAAGACAACCTTATCCATATTGTCATATTGAGACAAGC
1 ACATGTCTACTTTAGACATTATCTTGTTAAGATAACCTTATCCATATTGTCATATTAAGACAAGC
35888 TTATCCATTTTGTCTTGAC
66 TTATCCATTTTGTCTTGAC
* * * * *
35907 ACATATCTATTTTAGACATTGTCTTGTTAAGATAATCTTATCTATATTGTC
1 ACATGTCTACTTTAGACATTATCTTGTTAAGATAACCTTATCCATATTGTC
35958 TTAACACATG
Statistics
Matches: 115, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
84 113 0.98
85 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (84 bp):
ACATGTCTACTTTAGACATTATCTTGTTAAGATAACCTTATCCATATTGTCATATTAAGACAAGC
TTATCCATTTTGTCTTGAC
Found at i:35993 original size:56 final size:56
Alignment explanation
Indices: 35887--35993 Score: 133
Period size: 56 Copynumber: 1.9 Consensus size: 56
35877 TTGAGACAAG
* * * * **
35887 CTTATCCATTTTGTCTTGACACATATCTATTTTAGACATTGTCTTGTTAAGATAAT
1 CTTATCCATATTGTCTTAACACATATCTACTTTAGACATTATCTCATTAAGATAAT
* * *
35943 CTTATCTATATTGTCTTAACACATGTCTACTTTAGATATTATCTCATTAAG
1 CTTATCCATATTGTCTTAACACATATCTACTTTAGACATTATCTCATTAAG
35994 GCAACCTTAT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
56 42 1.00
ACGTcount: A:0.28, C:0.17, G:0.09, T:0.46
Consensus pattern (56 bp):
CTTATCCATATTGTCTTAACACATATCTACTTTAGACATTATCTCATTAAGATAAT
Found at i:36003 original size:56 final size:56
Alignment explanation
Indices: 35880--36003 Score: 131
Period size: 56 Copynumber: 2.2 Consensus size: 56
35870 TGTCATATTG
* * * * * **
35880 AGACAAGCTTATCCATTTTGTCTTGACACATATCTATTTTAGACATTGTCTTGTTA
1 AGACAACCTTATCCATATTGTCTTAACACATATCTACTTTAGACATTATCTCATTA
* * * * *
35936 AGATAATCTTATCTATATTGTCTTAACACATGTCTACTTTAGATATTATCTCATTA
1 AGACAACCTTATCCATATTGTCTTAACACATATCTACTTTAGACATTATCTCATTA
*
35992 AGGCAACCTTAT
1 AGACAACCTTAT
36004 ATATTTTTTG
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.42
Consensus pattern (56 bp):
AGACAACCTTATCCATATTGTCTTAACACATATCTACTTTAGACATTATCTCATTA
Found at i:38312 original size:13 final size:13
Alignment explanation
Indices: 38294--38319 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
38284 TACACCAAGT
38294 ATGTATCGATACA
1 ATGTATCGATACA
38307 ATGTATCGATACA
1 ATGTATCGATACA
38320 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:38317 original size:32 final size:33
Alignment explanation
Indices: 38276--38339 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
38266 TAGCCAAACT
* **
38276 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
38308 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
38340 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:40581 original size:21 final size:21
Alignment explanation
Indices: 40548--40597 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
40538 TTGCAAGTTG
*
40548 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
40570 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
40591 AAATAAA
1 AAATAAA
40598 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:44659 original size:13 final size:13
Alignment explanation
Indices: 44641--44705 Score: 112
Period size: 13 Copynumber: 5.0 Consensus size: 13
44631 ACATTTTTCT
44641 TTGTATCGATACA
1 TTGTATCGATACA
*
44654 TTGTATCGAAACA
1 TTGTATCGATACA
44667 TTGTATCGATACA
1 TTGTATCGATACA
44680 TTGTATCGATACA
1 TTGTATCGATACA
*
44693 CTGTATCGATACA
1 TTGTATCGATACA
44706 GGGGGATTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 49 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.35
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:47183 original size:20 final size:22
Alignment explanation
Indices: 47160--47214 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
47150 ACAGTTCAAA
* *
47160 GTATCGATACATGTTG-CA-AT
1 GTATCGATACATGTAGAAAGAT
47180 GTATCGATACATG-AGAAAGAT
1 GTATCGATACATGTAGAAAGAT
47201 GTATCGATACATGT
1 GTATCGATACATGT
47215 CATTGGGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 1 0.03
20 14 0.47
21 15 0.50
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.31
Consensus pattern (22 bp):
GTATCGATACATGTAGAAAGAT
Found at i:47280 original size:13 final size:13
Alignment explanation
Indices: 47262--47287 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
47252 TACACCAAGT
47262 ATGTATCGATACA
1 ATGTATCGATACA
47275 ATGTATCGATACA
1 ATGTATCGATACA
47288 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:47285 original size:32 final size:33
Alignment explanation
Indices: 47244--47307 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
47234 TAGCCAAACT
* **
47244 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
47276 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
47308 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:53370 original size:52 final size:52
Alignment explanation
Indices: 53300--53420 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
53290 GAAAATTTAT
*
53300 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
53352 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
53404 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
53421 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:53433 original size:52 final size:51
Alignment explanation
Indices: 53300--53440 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
53290 GAAAATTTAT
53300 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
53352 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
53404 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
53441 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:53447 original size:13 final size:13
Alignment explanation
Indices: 53429--53453 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
53419 CAAAGATCAG
53429 TGTATCGATACAA
1 TGTATCGATACAA
53442 TGTATCGATACA
1 TGTATCGATACA
53454 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:53547 original size:13 final size:13
Alignment explanation
Indices: 53529--53553 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
53519 CAAAAAAATA
53529 TGTATCGATACAT
1 TGTATCGATACAT
53542 TGTATCGATACA
1 TGTATCGATACA
53554 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:53549 original size:33 final size:33
Alignment explanation
Indices: 53507--53573 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
53497 AGTAGCTTAA
53507 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
53540 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
53573 A
1 A
53574 GATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:64102 original size:28 final size:28
Alignment explanation
Indices: 64066--64918 Score: 897
Period size: 28 Copynumber: 30.1 Consensus size: 28
64056 CGTTCATCTC
* * * *
64066 TTCAAAACCTACAAGTTATTGGCACTCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCT
* *
64094 TTCAAAACCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCT
*
64122 TTCAAAGCCCACAAGTTAGTGGCA-TCAT
1 TTCAAAGCCCACAAGTCAGTGGCACTC-T
** *
64150 TTCAAAGCCCATTAGTC-GATAGCAACTCT
1 TTCAAAGCCCACAAGTCAG-TGGC-ACTCT
* *
64179 TTCCAAAGCCCACAAGTCGGTGGCACCCT
1 TT-CAAAGCCCACAAGTCAGTGGCACTCT
* * *
64208 TTCAAAGCCTATGAA-TCGGTGGCAACTCT
1 TTCAAAGCCCA-CAAGTCAGTGGC-ACTCT
*
64237 TTCCAAAGCCCACAAGTCAGTGGCATTCT
1 TT-CAAAGCCCACAAGTCAGTGGCACTCT
* *
64266 TTCAAAGCCTACAAGTCAGTGTCA-TCCT
1 TTCAAAGCCCACAAGTCAGTGGCACT-CT
** *
64294 TTCAAAGCCCATGAGTTAGTGGCAACTCT
1 TTCAAAGCCCACAAGTCAGTGGC-ACTCT
* *
64323 TTCCAAAGCCCACAAGTTAGTGGCACCCT
1 TT-CAAAGCCCACAAGTCAGTGGCACTCT
*
64352 TTCAAAGCCCACAAGTCAGTGGCATTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACTC-T
*
64381 TTCAAAGCCTACACGAGTCAGTGGCAACTCT
1 TTCAAAGCC--CACAAGTCAGTGGC-ACTCT
* *
64412 CTTCAAAGCCCATAAGTCAGTGGCACCCT
1 -TTCAAAGCCCACAAGTCAGTGGCACTCT
* * *
64441 TTCAAAGCTCACAAGTCAATGGCACTTTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-TCT
* *
64470 TTCAAAGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCT
*
64498 TTCAAAGCCCATAAGTCAGTGGCA-TCCT
1 TTCAAAGCCCACAAGTCAGTGGCACT-CT
* *
64526 TTCAAAGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCT
** *
64554 TTCAAAGCCCACAAGTCAGTGATATTCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCT
* *
64582 TTCAAAGCCCATAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCT
*
64610 TTCAAAGCCCACAAGTTAGTGGCA-TCCT
1 TTCAAAGCCCACAAGTCAGTGGCACT-CT
*
64638 TTCAAAGCCC-CAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCT
*
64665 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCT
64693 TTCAAAGCCCACAAGTCAGTGGCA-TCCT
1 TTCAAAGCCCACAAGTCAGTGGCACT-CT
* * *
64721 TTGAAAGCCCACGAG-CTAGTGGCACCCT
1 TTCAAAGCCCACAAGTC-AGTGGCACTCT
64749 TTCAAAGCCCACAAGTCAGTGGCA-TCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCT
* ** *
64776 TTCAAAGCTCATGAG-CTAGTGGCACCCT
1 TTCAAAGCCCACAAGTC-AGTGGCACTCT
*
64804 TTCAAAGCCCACGAGTCAGTGGCA-TCCT
1 TTCAAAGCCCACAAGTCAGTGGCACT-CT
*
64832 TTCAAAGCCCACAAGTTAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACTC-T
*
64861 TTCAAAGCCCACAAGTTAGTGGCA-TCCT
1 TTCAAAGCCCACAAGTCAGTGGCACT-CT
*
64889 TTCGAAGCCCACAAGTCAAGTGGCAC-CT
1 TTCAAAGCCCACAAGTC-AGTGGCACTCT
64917 TT
1 TT
64919 TTTTTAAAAA
Statistics
Matches: 698, Mismatches: 89, Indels: 76
0.81 0.10 0.09
Matches are distributed among these distances:
26 1 0.00
27 49 0.07
28 446 0.64
29 110 0.16
30 65 0.09
31 15 0.02
32 12 0.02
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCACTCT
Found at i:64692 original size:139 final size:139
Alignment explanation
Indices: 64085--64915 Score: 936
Period size: 139 Copynumber: 5.9 Consensus size: 139
64075 TACAAGTTAT
* * * *
64085 TGGCACTCTTTCAAAACCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCAT
1 TGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCT
** * * **
64150 TTCAAAGCCCATTAGTC-GATAGCAACTCTTTCCAAAGCCCACAAGTCGGTGGCACCCTTTCAAA
66 TTCAAAGCCCACAAGTCAG-TGGC-ACCCTTT-CAAAGCCCACAAGTTAGTGGCACCCTTTCAAA
* * *
64214 G-CCTATGAATCGG
128 GCCCCA--AGTCAG
* ** * *
64227 TGGCAACTCTTTCCAAAGCCCACAAGTCAGTGGCATTCTTTCAAAGCCTACAAGTCAGTGTCATC
1 TGGC-ACCCTTT-CAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATC
** * *
64292 CTTTCAAAGCCCATGAGTTAGTGGCAACTCTTTCCAAAGCCCACAAGTTAGTGGCACCCTTTCAA
64 CTTTCAAAGCCCACAAGTCAGTGGC-ACCCTTT-CAAAGCCCACAAGTTAGTGGCACCCTTTCAA
64357 AGCCCACAAGTCAG
127 AGCCC-CAAGTCAG
* * * * *
64371 TGGCATTCTTTTCAAAGCCTACACGAGTCAGTGGCAACTCTCTTCAAAGCCCATAAGTCAGTGGC
1 TGGCA-CCCTTTCAAAGCC--CACAAGTCAGTGGC-ACCCT-TTCAAAGCCCACAAGTCAGTGGC
* * * **
64436 ACCCTTTCAAAGCTCACAAGTCAATGGCACTTTTTTCAAAGCCCACAAGTTAGTGGCACCCTTTC
61 ATCCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTC
*
64501 AAAGCCCATAAGTCAG
125 AAAGCCC-CAAGTCAG
* * ** *
64517 TGGCATCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGATATTCT
1 TGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCT
* *
64582 TTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCC
66 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCC
64647 CCAAGTCAG
131 CCAAGTCAG
64656 TGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCT
1 TGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCT
* * * *
64721 TTGAAAGCCCACGAG-CTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA-TCTTTCAAAG-
66 TTCAAAGCCCACAAGTC-AGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGC
*
64783 CTCATGAG-CTAG
130 CCCA--AGTC-AG
* * * *
64795 TGGCACCCTTTCAAAGCCCACGAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCACTCT
1 TGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA-TCC
* * * *
64860 TTTCAAAGCCCACAAGTTAGTGGCATCCTTTCGAAGCCCACAAGTCAAGTGGCACC
65 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGT-TAGTGGCACC
64916 TTTTTTTTAA
Statistics
Matches: 601, Mismatches: 69, Indels: 38
0.85 0.10 0.05
Matches are distributed among these distances:
137 3 0.00
138 11 0.02
139 175 0.29
140 79 0.13
141 52 0.09
142 8 0.01
143 27 0.04
144 116 0.19
145 28 0.05
146 56 0.09
147 46 0.08
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.23
Consensus pattern (139 bp):
TGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCT
TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCC
CCAAGTCAG
Found at i:71101 original size:20 final size:19
Alignment explanation
Indices: 71078--71131 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
71068 AATTTGTGAC
*
71078 ATATGGATACATTGTCTAAT
1 ATATGGATACATT-TCAAAT
**
71098 ATATCTATACATCTTCAAAT
1 ATATGGATACAT-TTCAAAT
*
71118 GTATGGATACATTT
1 ATATGGATACATTT
71132 GCTGAATGTA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 2 0.07
20 24 0.89
21 1 0.04
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (19 bp):
ATATGGATACATTTCAAAT
Found at i:71160 original size:21 final size:21
Alignment explanation
Indices: 71113--71165 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
71103 TATACATCTT
*
71113 CAAATGTATGGATACATTTGC
1 CAAATGTATTGATACATTTGC
**
71134 TGAATGTATTGATACAATTT-C
1 CAAATGTATTGATAC-ATTTGC
*
71155 CAAATGCATTG
1 CAAATGTATTG
71166 TTATATTTCA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (21 bp):
CAAATGTATTGATACATTTGC
Found at i:89434 original size:84 final size:85
Alignment explanation
Indices: 89273--89445 Score: 224
Period size: 84 Copynumber: 2.0 Consensus size: 85
89263 CCCCTAAGAT
** * *
89273 AAAATTATATGAAGGAAAAGTTTGAGTTTTTTTTGAAGATCGAGGTTAGAGTATCTCCTCGAAAG
1 AAAATTATACAAAGGAAAAGTTTGAG-TTTTTTTAAAGATCGAGGTTAGAGTATCCCCTCGAAAG
*
89338 AATAAGGATAGAGTTTCCCTA
65 AATAAGGATAGAGTTTCCCCA
* *
89359 AAAATTATACAAAGGAAAAGTTTGAG-TTTTTTAAAGATCGGGGTTAGAGTATCCCCTC-ATAAT
1 AAAATTATACAAAGGAAAAGTTTGAGTTTTTTTAAAGATCGAGGTTAGAGTATCCCCTCGA-AAG
* * *
89422 ACTAGGGTTAGAGTTTCCCCA
65 AATAAGGATAGAGTTTCCCCA
89443 AAA
1 AAA
89446 TCAAAAATTT
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
83 1 0.01
84 51 0.67
86 24 0.32
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (85 bp):
AAAATTATACAAAGGAAAAGTTTGAGTTTTTTTAAAGATCGAGGTTAGAGTATCCCCTCGAAAGA
ATAAGGATAGAGTTTCCCCA
Found at i:92782 original size:20 final size:20
Alignment explanation
Indices: 92757--92809 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
92747 ATTAGGCACA
** * *
92757 ATGTATCGATACTTTTTACT
1 ATGTATCGATACAGTGTACC
*
92777 ATGTATTGATACAGTGTACC
1 ATGTATCGATACAGTGTACC
92797 ATGTATCGATACA
1 ATGTATCGATACA
92810 AACAGTGGTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACAGTGTACC
Found at i:93637 original size:26 final size:26
Alignment explanation
Indices: 93607--93670 Score: 71
Period size: 25 Copynumber: 2.5 Consensus size: 26
93597 TTATTTATGA
*
93607 AATCTCCTTCTTTTCGTTTTC-GAAAT
1 AATCTCCTTCTTTTCG-TTTCAAAAAT
* *
93633 AATCTTCTT-TTTTTGTTTCAAAAAT
1 AATCTCCTTCTTTTCGTTTCAAAAAT
93658 AATCTCC-TCTTTT
1 AATCTCCTTCTTTT
93671 ATAAAAACAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
24 5 0.16
25 19 0.59
26 8 0.25
ACGTcount: A:0.22, C:0.20, G:0.05, T:0.53
Consensus pattern (26 bp):
AATCTCCTTCTTTTCGTTTCAAAAAT
Found at i:95591 original size:20 final size:20
Alignment explanation
Indices: 95560--95614 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
95550 GTATCAATAT
*
95560 AATGTATTGATAC-TAAGTTC
1 AATGTATCGATACATAA-TTC
* *
95580 ATTGTATCGATACATCATTC
1 AATGTATCGATACATAATTC
95600 AATGTATCGATACAT
1 AATGTATCGATACAT
95615 TCTAGAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 28 0.93
21 2 0.07
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.38
Consensus pattern (20 bp):
AATGTATCGATACATAATTC
Found at i:98324 original size:79 final size:77
Alignment explanation
Indices: 98203--98608 Score: 503
Period size: 79 Copynumber: 5.2 Consensus size: 77
98193 GATAATAACG
* * * * *
98203 GGGTTGGAGTATCTCCTCAAAAATAATGGGTTGGAGTATCCCCGATTGTGAAAAATCGATGATTT
1 GGGTTGGAGTATCCCCTCGAAAATAACGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTT
*
98268 AAAAATAAAATC
66 AGAAATAAAATC
* * * *
98280 GGGATTGGAGTATCCCTTCGGAAATAACAGGGTTGGAGTATCCCCGACTCTGAAAAATTGATGTT
1 GGG-TTGGAGTATCCCCTCGAAAATAAC-GGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTT
*
98345 TTAGAAATAAAACC
64 TTAGAAATAAAATC
* * *
98359 AGGGTTGGAGTATCCCCTCGAAAATAACGGGTTGGAGTATCCCCGATTGTGAGAAATTAATATTT
1 -GGGTTGGAGTATCCCCTCGAAAATAACGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTT
*
98424 TAGAAATAAAACTG
65 TAGAAATAAAA-TC
* *
98438 GGGTTAGAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCC-A--ATGAAAAATTGATGTTT
1 GGGTTGGAGTATCCCCTCGAAAATAACG-GGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTT
*
98500 TAGAAATTAAATC
65 TAGAAATAAAATC
* * * * *
98513 GCGGTTGGAGTGTCCCCTCGAAAATAACGGGGTTGGAGTATCTCCGATTGTGAAAAGTCGGTGTT
1 G-GGTTGGAGTATCCCCTCGAAAATAAC-GGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTT
*
98578 TTGGAAATAAAATC
64 TTAGAAATAAAATC
98592 GGAGTTGGAGTATCCCC
1 GG-GTTGGAGTATCCCC
98609 AATTATGGAA
Statistics
Matches: 281, Mismatches: 37, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
75 2 0.01
76 61 0.22
77 5 0.02
78 91 0.32
79 119 0.42
80 3 0.01
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.28
Consensus pattern (77 bp):
GGGTTGGAGTATCCCCTCGAAAATAACGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTT
AGAAATAAAATC
Found at i:98627 original size:51 final size:51
Alignment explanation
Indices: 98544--98712 Score: 189
Period size: 51 Copynumber: 3.3 Consensus size: 51
98534 AAATAACGGG
* * *
98544 GTTGGAGTATCTCCGATTGT-GAAAAGTCGGTGTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCAATTATGGAAAA-TCGGTGTTTTGGAAATAAAATCGGA
* * *
98595 GTTGGAGTATCCCCAATTATGGAAAATGGGTGTTTTAGAAATAAAATCAGA
1 GTTGGAGTATCCCCAATTATGGAAAATCGGTGTTTTGGAAATAAAATCGGA
* * * * * * *
98646 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATGAAACCGG-
1 GTTGGAGTATCCCCAATTATGGAAAATCGGTGTTTTGGAAATAAAATCGGA
98696 GATTGGAGTATCCCCAA
1 G-TTGGAGTATCCCCAA
98713 GATGAAAAAT
Statistics
Matches: 100, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
50 1 0.01
51 94 0.94
52 5 0.05
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (51 bp):
GTTGGAGTATCCCCAATTATGGAAAATCGGTGTTTTGGAAATAAAATCGGA
Found at i:101034 original size:20 final size:19
Alignment explanation
Indices: 101009--101080 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 19
100999 AAAATGCCTG
*
101009 AATGTATCGATACATTGTAA
1 AATGTATCGATACAATG-AA
*
101029 AATGTATCGATACAATGAGC
1 AATGTATCGATACAATGA-A
*
101049 AATGTATCGATATAATGCAA
1 AATGTATCGATACAATG-AA
*
101069 ACTGTATCGATA
1 AATGTATCGATA
101081 TATCTGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
19 1 0.02
20 43 0.96
21 1 0.02
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (19 bp):
AATGTATCGATACAATGAA
Found at i:101933 original size:42 final size:42
Alignment explanation
Indices: 101841--102035 Score: 180
Period size: 42 Copynumber: 4.5 Consensus size: 42
101831 AAAAAGAGTA
* * * *
101841 CGTCCTGCT-TTTCGAGGATAAAGGAAAAAAGAAAAATGAAA-TG
1 CGTCCTGCTCTTT-GAGGACAAAAG-AAAGAGGAAAAT-AAAGTG
*
101884 CGTCCTGCTCTTTGAGGACAAAAGAAAGAGGAAAATAAAGTA
1 CGTCCTGCTCTTTGAGGACAAAAGAAAGAGGAAAATAAAGTG
* * * *
101926 CATCCTGCTCTTTGAGGACAGAAGGGAAAAGAAGG-GAATGAAGTG
1 CGTCCTGCTCTTTGAGGACA-AA-AG-AAAG-AGGAAAATAAAGTG
* *
101971 TGTCCTGCTCTTTGAGGACAAAGGAAAGAGGAAAATAAAGTG
1 CGTCCTGCTCTTTGAGGACAAAAGAAAGAGGAAAATAAAGTG
** *
102013 CGTCCCACTCTTTAAGGACAAAA
1 CGTCCTGCTCTTTGAGGACAAAA
102036 AGTGCCACCA
Statistics
Matches: 126, Mismatches: 19, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
41 6 0.05
42 60 0.48
43 22 0.17
44 6 0.05
45 29 0.23
46 3 0.02
ACGTcount: A:0.39, C:0.15, G:0.26, T:0.20
Consensus pattern (42 bp):
CGTCCTGCTCTTTGAGGACAAAAGAAAGAGGAAAATAAAGTG
Found at i:102116 original size:61 final size:60
Alignment explanation
Indices: 102020--102209 Score: 241
Period size: 61 Copynumber: 3.2 Consensus size: 60
102010 GTGCGTCCCA
* **
102020 CTCTTTAAGGAC--AAAAAGTGCCACCAACTCATGTGGGCTTTGAAAAAGAAAGGTGTCCTG
1 CTCTTTGAGGACTGAAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAAA-AAAGGTGTCCTG
* *
102080 CTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAAAAGGCGCCCTG
1 CTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAA-AAAAAGGTGTCCTG
*
102141 CTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT-----AAAAGGTGTCCTG
1 CTCTTTGAGGACT-GAAAAATGCCACCAACTTGTGTGGGCTTTGAAAAAAAAGGTGTCCTG
102197 CTCTTTGAGGACT
1 CTCTTTGAGGACT
102210 AAAGGGCGAA
Statistics
Matches: 118, Mismatches: 8, Indels: 12
0.86 0.06 0.09
Matches are distributed among these distances:
56 24 0.20
60 11 0.09
61 48 0.41
62 35 0.30
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (60 bp):
CTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAAAAAAGGTGTCCTG
Found at i:102297 original size:217 final size:218
Alignment explanation
Indices: 102035--102430 Score: 602
Period size: 217 Copynumber: 1.8 Consensus size: 218
102025 TAAGGACAAA
*
102035 AAGTGCCACCAACTCATGTGGGCTTTGAAAAAGAAAGGTGTCCTGCTCTTTGAGGACTGAAAAAT
1 AAGTGCCACCAACTCATGTGGGCTTTGAAAAAGAAAGGCGTCCTGCTCTTTGAGGACTGAAAAAT
* *
102100 GCCACCAACTTGTGTGGGCTTTGAAAGAAAAAGGCGCCCTGCTCTTTGAGGACTAGAAAAGTGCC
66 GCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGCCCTGCTCTCTGAGGACT--AAAAGTGCC
*
102165 ACCAACTTGTGTGGGCTTT-A-A-AAGGTGTCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAG
129 ACCAACTCGTGTGGGCTTTAAGAGAAGGTGTCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAG
102227 AGCGTCCTGCTCTTTGAGGACTGGG
194 AGCGTCCTGCTCTTTGAGGACTGGG
** * **
102252 AAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
1 AAGTGCCACCAACTCATGTGGGCTTTGAAAAAG-AAAGGCGTCCTGCTCTTTGAGGACTGAAAAA
* * *
102316 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTCTGAGGACTAAAGGTGCCA
65 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGCCCTGCTCTCTGAGGACTAAAAGTGCCA
102381 CCAACTCGTGTGGGCTTTGAAAAGAGAAGGTGTCCTGCTCTTTGAGGACT
130 CCAACTCGTGTGGGCTTT---AAGAGAAGGTGTCCTGCTCTTTGAGGACT
102431 GGGAAGTGCC
Statistics
Matches: 160, Mismatches: 12, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
215 26 0.16
216 5 0.03
217 103 0.64
219 1 0.01
220 1 0.01
221 24 0.15
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (218 bp):
AAGTGCCACCAACTCATGTGGGCTTTGAAAAAGAAAGGCGTCCTGCTCTTTGAGGACTGAAAAAT
GCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGCCCTGCTCTCTGAGGACTAAAAGTGCCAC
CAACTCGTGTGGGCTTTAAGAGAAGGTGTCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAG
CGTCCTGCTCTTTGAGGACTGGG
Found at i:102319 original size:61 final size:61
Alignment explanation
Indices: 102228--102522 Score: 374
Period size: 61 Copynumber: 4.9 Consensus size: 61
102218 AAAGGAGAGA
* *
102228 GCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
102289 GCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
* * * *
102350 GCGTCCTGCTCTCTGAGGACTA-AAGGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAGAAG
1 GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAG
* * *
102410 GTGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA-G---A-
1 GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
* * * *
102466 -CGTCTTGCTCTTTGAGGACTAAAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGG
1 GCGTCCTGCTCTTTGAGGACT--AGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
102523 CATCCTGCTC
Statistics
Matches: 209, Mismatches: 18, Indels: 17
0.86 0.07 0.07
Matches are distributed among these distances:
55 18 0.09
57 29 0.14
58 1 0.00
60 55 0.26
61 106 0.51
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (61 bp):
GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
Found at i:102440 original size:121 final size:121
Alignment explanation
Indices: 102228--102464 Score: 363
Period size: 121 Copynumber: 2.0 Consensus size: 121
102218 AAAGGAGAGA
* * *
102228 GCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGT
1 GCGTCCTGCTCTCTGAGGACT-GAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAGGCGT
102293 CCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
65 CCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
* *
102350 GCGTCCTGCTCTCTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAGAAGGTG
1 GCGTCCTGCTCTCTGAGGACTGAAA-GTGCCACCAACTCGTGTGGGCTTT-AAAAGGAAAAGGCG
*
102413 TCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAG
64 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG
102465 ACGTCTTGCT
Statistics
Matches: 106, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
120 2 0.02
121 77 0.73
122 27 0.25
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (121 bp):
GCGTCCTGCTCTCTGAGGACTGAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAGGCGTC
CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
Found at i:102648 original size:333 final size:332
Alignment explanation
Indices: 102007--102798 Score: 1135
Period size: 333 Copynumber: 2.4 Consensus size: 332
101997 AGAGGAAAAT
* * * *
102007 AAAGTGCGTCCCACTCTTTAAGGACAAAAAGTGCCACCAACTCATGTGGGCTTTGAAAA-AGAAA
1 AAAG-GCGTCCTACTCTCTGAGGACTAAAAGTGCCACCAACTCATGTGGGCTTTGAAAAGAG-AA
* *
102071 GGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAAAAGGCG
64 GGTGTCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTT-----AAAAAGACG
* * **
102136 CCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
123 CCCTGCTCTTTGAGGACTAAAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCT
* *
102201 TTGAGGACTAAAGGGCGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACT
188 TTGAGGACTAAAGGGCGAAAGGAGAGAGCGTCCTGCTCTTTAAGGACTGAGAAGTGCCACCAACT
* * *
102266 TGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTG
253 TGTGTGGGCTTTAAAAAGAAAAGGCATCCTGCTCTTTGAAGACTGAAAGGTGCCACCAACTTGTG
102331 TGGGCTTTAAAAGGA
318 TGGGCTTTAAAAGGA
* * *
102346 AAAGGCGTCCTGCTCTCTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAGAAGG
1 AAAGGCGTCCTACTCTCTGAGGACTAAAAGTGCCACCAACTCATGTGGGCTTTGAAAAGAGAAGG
* * *
102411 TGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGACGTCTTGCT
66 TGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGACGCCCTGCT
*
102475 CTTTGAGGACTAAAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGAGG
130 CTTTGAGGACT-AAAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGG
* * *
102540 ATTGAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTAAGGACT-AGAAGGTGCCACCAACTTGTGT
194 ACTAAAGGGCGAAAGGAGAGAGCGTCCTGCTCTTTAAGGACTGAGAA-GTGCCACCAACTTGTGT
102604 GGGCTTTAAAAAGAAAAGGCATCCTGCTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGC
258 GGGCTTTAAAAAGAAAAGGCATCCTGCTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGC
102669 TTTAAAAGGA
323 TTTAAAAGGA
* * * * *
102679 AAAGGTGTCCTACTCTTTGAGGATTAAATGTGCCACCAACTCATGTGGGCTTT-AAAAGGAAAAG
1 AAAGGCGTCCTACTCTCTGAGGACTAAAAGTGCCACCAACTCATGTGGGCTTTGAAAA-GAGAAG
* * *
102743 GCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGA
65 GTGTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAGA
102799 AAAAGGCATC
Statistics
Matches: 411, Mismatches: 35, Indels: 20
0.88 0.08 0.04
Matches are distributed among these distances:
331 2 0.00
332 53 0.13
333 253 0.62
338 96 0.23
339 7 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (332 bp):
AAAGGCGTCCTACTCTCTGAGGACTAAAAGTGCCACCAACTCATGTGGGCTTTGAAAAGAGAAGG
TGTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGACGCCCTGCTC
TTTGAGGACTAAAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGAC
TAAAGGGCGAAAGGAGAGAGCGTCCTGCTCTTTAAGGACTGAGAAGTGCCACCAACTTGTGTGGG
CTTTAAAAAGAAAAGGCATCCTGCTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
AAAAGGA
Found at i:102726 original size:60 final size:60
Alignment explanation
Indices: 102561--102824 Score: 384
Period size: 61 Copynumber: 4.3 Consensus size: 60
102551 AAAGGAGAGA
* * *
102561 GCGTCCTGCTCTTTAAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
1 GCGTCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAG
* * *
102622 GCATCCTGCTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAG
* * * * *
102683 GTGTCCTACTCTTTGAGGATTAAATGTGCCACCAACTCATGTGGGCTTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAG
*
102743 GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGGAAAAG
*
102804 GCATCCTGCTCTTTGAGGACT
1 GCGTCCTGCTCTTTGAGGACT
102825 GGAAGGGCTA
Statistics
Matches: 182, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
60 80 0.44
61 101 0.55
62 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (60 bp):
GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAG
Found at i:102731 original size:121 final size:122
Alignment explanation
Indices: 102561--102830 Score: 391
Period size: 121 Copynumber: 2.2 Consensus size: 122
102551 AAAGGAGAGA
* **
102561 GCGTCCTGCTCTTTAAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCAT
1 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTCATGTGGGCTTTAAAAAGAAAAGGCAT
* *
102626 CCTGCTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAG
66 CCTGCTCTTTGAAGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
* * * * * *
102683 GTGTCCTACTCTTTGAGGATTA-AATGTGCCACCAACTCATGTGGGCTTTAAAAGGAAAAGGCGT
1 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTCATGTGGGCTTTAAAAAGAAAAGGCAT
*
102747 CCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
66 CCTGCTCTTTGAAGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
* *
102804 GCATCCTGCTCTTTGAGGACTGGAAGG
1 GCGTCCTGCTCTTTGAGGACTAGAAGG
102831 GCTAAAAGAG
Statistics
Matches: 128, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
120 27 0.21
121 80 0.62
122 21 0.16
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (122 bp):
GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTCATGTGGGCTTTAAAAAGAAAAGGCAT
CCTGCTCTTTGAAGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
Found at i:109118 original size:79 final size:79
Alignment explanation
Indices: 108968--109377 Score: 506
Period size: 79 Copynumber: 5.2 Consensus size: 79
108958 AGATAATAAT
* * * * *
108968 AGGGTTGGAGTATCTCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCGATGAT
1 AGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTT
**
109033 TTAGAAATAAAATT
66 TTAGAAATAAAACC
* * * *
109047 AGGATTAGAGTGTCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGACTATGAAAAATTGATGTT
1 AGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTT
109112 TTAGAAATAAAACC
66 TTAGAAATAAAACC
* * * *
109126 AGGGTTGGAGTATCCCCTC-AGAAATAACGGGGTTAGAGTATCCCCGATTATGAGAAATTAATAT
1 AGGGTTGGAGTATCCCCTCGA-AAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGT
109190 TTTAGAAATAAAACC
65 TTTAGAAATAAAACC
* * *
109205 GGGGGTTGGAGTATCCCCTCGAAAATAACGAGGTTAGAGTATCCCCGA-T-T-AAAAATTGATGT
1 -AGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGT
109267 TTTAGAAATAAAACC
65 TTTAGAAATAAAACC
* * * * * * *
109282 GGGGTTGGAGTGTCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAGTCGGTGTT
1 AGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTT
* *
109347 TTGGAAATAAAATC
66 TTAGAAATAAAACC
*
109361 -GGAGTTAGAGTATCCCC
1 AGG-GTTGGAGTATCCCC
109378 GATTATAGAA
Statistics
Matches: 289, Mismatches: 35, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
76 43 0.15
77 25 0.09
78 5 0.02
79 172 0.60
80 43 0.15
81 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (79 bp):
AGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTT
TTAGAAATAAAACC
Found at i:109298 original size:156 final size:158
Alignment explanation
Indices: 108968--109377 Score: 517
Period size: 156 Copynumber: 2.6 Consensus size: 158
108958 AGATAATAAT
* ** * *
108968 AGGGTTGGAGTATCTCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCGATGAT
1 AGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCAATGAT
** * * *
109033 TTAGAAATAAAATTAGGATTAGAGTGTCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGACTAT
66 TTAGAAATAAAACGAGGATTAGAGTATCCCCTCGAAAATAACGAGGTTAGAGTATCCCCGACTAT
109098 GAAAAATTGATGTTTTAGAAATAAAACC
131 GAAAAATTGATGTTTTAGAAATAAAACC
* * * *
109126 AGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTAGAGTATCCCCGATTATGAGAAATTAAT-AT
1 AGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCAATGA-
* * *
109190 TTTAGAAATAAAACCGGGGGTTGGAGTATCCCCTCGAAAATAACGAGGTTAGAGTATCCCCGA-T
65 TTTAGAAATAAAA-CGAGGATTAGAGTATCCCCTCGAAAATAACGAGGTTAGAGTATCCCCGACT
109254 -T-AAAAATTGATGTTTTAGAAATAAAACC
129 ATGAAAAATTGATGTTTTAGAAATAAAACC
* * * * ** *
109282 GGGGTTGGAGTGTCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAGTCGGTGTT
1 AGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCAATGAT
*
109347 TTGGAAATAAAATC--GGAGTTAGAGTATCCCC
66 TTAGAAATAAAA-CGAGGA-TTAGAGTATCCCC
109378 GATTATAGAA
Statistics
Matches: 216, Mismatches: 32, Indels: 11
0.83 0.12 0.04
Matches are distributed among these distances:
154 2 0.01
155 12 0.06
156 92 0.43
157 2 0.01
158 67 0.31
159 41 0.19
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (158 bp):
AGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCAATGAT
TTAGAAATAAAACGAGGATTAGAGTATCCCCTCGAAAATAACGAGGTTAGAGTATCCCCGACTAT
GAAAAATTGATGTTTTAGAAATAAAACC
Found at i:109376 original size:51 final size:50
Alignment explanation
Indices: 109313--109489 Score: 196
Period size: 51 Copynumber: 3.5 Consensus size: 50
109303 AAATAACGGG
*
109313 GTTGGAGTATCCCCGATTGTGAAAAGTCGGTGTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAAA-TCGGTGTTTTGGAAATAAAATCGGA
* * * *
109364 GTTAGAGTATCCCCGATTATAGAAAATGGGTGTTTTAGAAATAAAATCGTA
1 GTTGGAGTATCCCCGATTAT-GAAAATCGGTGTTTTGGAAATAAAATCGGA
* * * * * *
109415 GTTGGAGTATCCCCAATTAAGAAAAATTGATGTTTTGGAAATGAAACCGG-
1 GTTGGAGTATCCCCGATTATG-AAAATCGGTGTTTTGGAAATAAAATCGGA
*
109465 GATTGGAGTATCCCCGA-GATGAAAA
1 G-TTGGAGTATCCCCGATTATGAAAA
109490 ATCTAGAAAT
Statistics
Matches: 106, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
49 4 0.04
50 4 0.04
51 93 0.88
52 5 0.05
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.28
Consensus pattern (50 bp):
GTTGGAGTATCCCCGATTATGAAAATCGGTGTTTTGGAAATAAAATCGGA
Found at i:111794 original size:20 final size:19
Alignment explanation
Indices: 111769--111853 Score: 92
Period size: 20 Copynumber: 4.6 Consensus size: 19
111759 AAAATGCCTG
111769 AATGTATCGATACAATGAGC
1 AATGTATCGATACAATGA-C
111789 AATGTATCGATACAAT---
1 AATGTATCGATACAATGAC
111805 -A--TATCGATACAATGAGC
1 AATGTATCGATACAATGA-C
*
111822 AATGTATCGATACAATGCAA
1 AATGTATCGATACAATG-AC
111842 AATGTATCGATA
1 AATGTATCGATA
111854 TATCTGGGTA
Statistics
Matches: 56, Mismatches: 1, Indels: 16
0.77 0.01 0.22
Matches are distributed among these distances:
13 12 0.21
15 1 0.02
18 1 0.02
20 41 0.73
21 1 0.02
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.27
Consensus pattern (19 bp):
AATGTATCGATACAATGAC
Found at i:111804 original size:13 final size:13
Alignment explanation
Indices: 111788--111818 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
111778 ATACAATGAG
111788 CAATGTATCGATA
1 CAATGTATCGATA
*
111801 CAATATATCGATA
1 CAATGTATCGATA
111814 CAATG
1 CAATG
111819 AGCAATGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:111815 original size:33 final size:33
Alignment explanation
Indices: 111773--111837 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
111763 TGCCTGAATG
111773 TATCGATACAATGAGCAATGTATCGATACAATA
1 TATCGATACAATGAGCAATGTATCGATACAATA
111806 TATCGATACAATGAGCAATGTATCGATACAAT
1 TATCGATACAATGAGCAATGTATCGATACAAT
111838 GCAAAATGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (33 bp):
TATCGATACAATGAGCAATGTATCGATACAATA
Found at i:111918 original size:13 final size:13
Alignment explanation
Indices: 111871--111900 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
111861 GTAAACCCAG
*
111871 AATGTATCGATAC
1 AATGTATCCATAC
111884 AATGTATCCATAC
1 AATGTATCCATAC
111897 AATG
1 AATG
111901 AACAATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (13 bp):
AATGTATCCATAC
Found at i:114198 original size:24 final size:24
Alignment explanation
Indices: 114154--114199 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
114144 TTGAGAATCT
* *
114154 TTTTAATTTCTTAACATCATATAA
1 TTTTAATTTCTTAAAAACATATAA
114178 TTTTAATTT-TGTAAAAACATAT
1 TTTTAATTTCT-TAAAAACATAT
114200 TCTACATCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.05
24 18 0.95
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (24 bp):
TTTTAATTTCTTAAAAACATATAA
Found at i:116709 original size:13 final size:15
Alignment explanation
Indices: 116674--116703 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
116664 CATGTCTTAA
116674 TGCTAAAAATGAACT
1 TGCTAAAAATGAACT
116689 TGCTAAAAATGAACT
1 TGCTAAAAATGAACT
116704 CTAAAATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (15 bp):
TGCTAAAAATGAACT
Found at i:117400 original size:14 final size:14
Alignment explanation
Indices: 117381--117430 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
117371 GATTTATTAA
117381 AAAAATAATTAAAT
1 AAAAATAATTAAAT
*
117395 AAAAATAATAAAAAT
1 AAAAATAAT-TAAAT
*
117410 AAAATATCAATTAATT
1 AAAA-AT-AATTAAAT
117426 AAAAA
1 AAAAA
117431 AGAAAAAAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
14 9 0.30
15 9 0.30
16 9 0.30
17 3 0.10
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (14 bp):
AAAAATAATTAAAT
Found at i:117651 original size:17 final size:17
Alignment explanation
Indices: 117629--117663 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
117619 ATTTCATGCC
117629 TTCATACCTCCATGCAT
1 TTCATACCTCCATGCAT
*
117646 TTCATACCTTCATGCAT
1 TTCATACCTCCATGCAT
117663 T
1 T
117664 GATTATTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.23, C:0.31, G:0.06, T:0.40
Consensus pattern (17 bp):
TTCATACCTCCATGCAT
Found at i:123250 original size:12 final size:12
Alignment explanation
Indices: 123230--123271 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
123220 ACATGGACTT
123230 AAAAAA-AAAA-
1 AAAAAAGAAAAG
123240 AAAAAAGAAAAG
1 AAAAAAGAAAAG
* *
123252 AAGAAAGAGAAG
1 AAAAAAGAAAAG
123264 AAAAAAGA
1 AAAAAAGA
123272 GTCATTTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
10 6 0.22
11 4 0.15
12 17 0.63
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (12 bp):
AAAAAAGAAAAG
Found at i:125637 original size:90 final size:88
Alignment explanation
Indices: 125361--125673 Score: 308
Period size: 89 Copynumber: 3.5 Consensus size: 88
125351 GAAAACATAT
* * * * *
125361 TTCCTAATCATATCCCCTTCA-CTCAGCCCCTAAATGGTATTGATGCATCACAAAGCTTGATTTC
1 TTCCTAATCATATCCCTTTTATC-CAACCACTAGATGGTATTGATGCATCACAAAGCTTGATTTC
*
125425 CTGAGGGCAAGGTGCAGTCCACACA
65 CTG-GGGCAAGGTGCAGCCCACACA
* * * * * * * *
125450 TTCCCAATGATATTCCC-TTCATCTAACCACTAAATGGTATTGATGCATCATAAAGCTTAATCTC
1 TTCCTAATCATA-TCCCTTTTATCCAACCACTAGATGGTATTGATGCATCACAAAGCTTGATTTC
* * * *
125514 ATGGAATG-AAGGTACAGCCTACACA
65 CTGG--GGCAAGGTGCAGCCCACACA
* *
125539 TTCCTAATCATATCGCCTTTTACCCAACCACTAGATGGTATTGATGCATCACAAAGTTTGATTTC
1 TTCCTAATCATATC-CCTTTTATCCAACCACTAGATGGTATTGATGCATCACAAAGCTTGATTTC
* *
125604 CTTGGGGCCAGGTGCAGCCCACAGA
65 C-TGGGGCAAGGTGCAGCCCACACA
* * * *
125629 TTCTTAATCATTTCCCTTTTATCCAACCACTAGATAGTACTGATG
1 TTCCTAATCATATCCCTTTTATCCAACCACTAGATGGTATTGATG
125674 TATTAAAGTT
Statistics
Matches: 182, Mismatches: 34, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
88 3 0.02
89 106 0.58
90 70 0.38
91 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (88 bp):
TTCCTAATCATATCCCTTTTATCCAACCACTAGATGGTATTGATGCATCACAAAGCTTGATTTCC
TGGGGCAAGGTGCAGCCCACACA
Found at i:125885 original size:47 final size:47
Alignment explanation
Indices: 125802--126310 Score: 457
Period size: 47 Copynumber: 11.0 Consensus size: 47
125792 GTTAAATTTT
* * *
125802 CCCTCATTTGACTGTATTGGCATTAAGG-CCTAGTCAAACTCTTCTCA
1 CCCTCGTTTGACTGTATTGGCGTT-AGGACCTGGTCAAACTCTTCTCA
** * * * *
125849 CTTTTGTTTGATTGTATTGGCATTAGGATCTGGTCAAACTCTT-TCCA
1 CCCTCGTTTGACTGTATTGGCGTTAGGACCTGGTCAAACTCTTCT-CA
* * * *
125896 CCCTCATTTGACTGTATTGTCTTTAGGACCTGGTCAAACTTTTCTCA
1 CCCTCGTTTGACTGTATTGGCGTTAGGACCTGGTCAAACTCTTCTCA
* * * * * *
125943 CCGTGGTTTGATTGTATTAGCATTAGGACCTAGTCAAACTCTTCTCA
1 CCCTCGTTTGACTGTATTGGCGTTAGGACCTGGTCAAACTCTTCTCA
* * * *
125990 --C-C---T-ACTATATTAGCGTTAGGACTTCGTCAAACTCTT-TCCA
1 CCCTCGTTTGACTGTATTGGCGTTAGGACCTGGTCAAACTCTTCT-CA
* * * *
126030 CCCTCATTTAACTATATTGGCGTTAGGACCTGGTCCAACTCTTCTCA
1 CCCTCGTTTGACTGTATTGGCGTTAGGACCTGGTCAAACTCTTCTCA
* * * *
126077 CCTTGGTTTGACTGTATTGGCGTTAGGACATGGTCAAACTCTTTTCA
1 CCCTCGTTTGACTGTATTGGCGTTAGGACCTGGTCAAACTCTTCTCA
* * * *
126124 CCTTTGTTTGACTGTATTGGCGTTAGGACCTAGTCAAATTCTT-TCCA
1 CCCTCGTTTGACTGTATTGGCGTTAGGACCTGGTCAAACTCTTCT-CA
* * * *
126171 CCCTTGTTTGACTATATTGGCGTTAGGACCTAGTCAAACTCTTATCA
1 CCCTCGTTTGACTGTATTGGCGTTAGGACCTGGTCAAACTCTTCTCA
* * * *
126218 CCCTCGTTTGACTGTATTGGCGTTAGAACCTGATCAAACCCTTTTCA
1 CCCTCGTTTGACTGTATTGGCGTTAGGACCTGGTCAAACTCTTCTCA
* * * * * *
126265 -CCTCGTTTAATTGTAGTAGCGTTAGGACCTGGTTAAACTTTTCTCA
1 CCCTCGTTTGACTGTATTGGCGTTAGGACCTGGTCAAACTCTTCTCA
126311 TTTCGATCTA
Statistics
Matches: 380, Mismatches: 68, Indels: 29
0.80 0.14 0.06
Matches are distributed among these distances:
39 1 0.00
40 30 0.08
41 1 0.00
42 1 0.00
43 1 0.00
46 42 0.11
47 301 0.79
48 3 0.01
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (47 bp):
CCCTCGTTTGACTGTATTGGCGTTAGGACCTGGTCAAACTCTTCTCA
Found at i:126199 original size:228 final size:228
Alignment explanation
Indices: 125802--126219 Score: 572
Period size: 228 Copynumber: 1.8 Consensus size: 228
125792 GTTAAATTTT
* * * * *
125802 CCCTCATTTGACTGTATTGGCATTAAGGCCTAGTCAAACTCTTCTCACTTTTGTTTGATTGTATT
1 CCCTCATTTAACTATATTGGCATTAAGGCCTAGTCAAACTCTTCTCACCTTGGTTTGACTGTATT
* * *
125867 GGCATTAGGATCTGGTCAAACTCTTTCCACCCTCATTTGACTGTATTGTCTTTAGGACCTGGTCA
66 GGCATTAGGATCTGGTCAAACTCTTTCCACCCTCATTTGACTGTATTGGCGTTAGGACCTAGTCA
* * * *
125932 AACTTTTCTCACCGTGGTTTGATTGTATTAGCATTAGGACCTAGTCAAACTCTTCTCACCTACTA
131 AACTTTTCTCACCCTGGTTTGACTATATTAGCATTAGGACCTAGTCAAACTCTTATCACCTACTA
125997 TATTAGCGTTAGGACTTCGTCAAACTCTTTCCA
196 TATTAGCGTTAGGACTTCGTCAAACTCTTTCCA
* * *
126030 CCCTCATTTAACTATATTGGCGTT-AGGACCTGGTCCAACTCTTCTCACCTTGGTTTGACTGTAT
1 CCCTCATTTAACTATATTGGCATTAAGG-CCTAGTCAAACTCTTCTCACCTTGGTTTGACTGTAT
* * * **
126094 TGGCGTTAGGA-CATGGTCAAACTCTTTTCACCTTTGTTTGACTGTATTGGCGTTAGGACCTAGT
65 TGGCATTAGGATC-TGGTCAAACTCTTTCCACCCTCATTTGACTGTATTGGCGTTAGGACCTAGT
* * * *
126158 CAAATTCTTTC-CACCCTTGTTTGACTATATTGGCGTTAGGACCTAGTCAAACTCTTATCACC
129 CAAACT-TTTCTCACCCTGGTTTGACTATATTAGCATTAGGACCTAGTCAAACTCTTATCACC
126220 CTCGTTTGAC
Statistics
Matches: 163, Mismatches: 24, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
227 4 0.02
228 155 0.95
229 4 0.02
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (228 bp):
CCCTCATTTAACTATATTGGCATTAAGGCCTAGTCAAACTCTTCTCACCTTGGTTTGACTGTATT
GGCATTAGGATCTGGTCAAACTCTTTCCACCCTCATTTGACTGTATTGGCGTTAGGACCTAGTCA
AACTTTTCTCACCCTGGTTTGACTATATTAGCATTAGGACCTAGTCAAACTCTTATCACCTACTA
TATTAGCGTTAGGACTTCGTCAAACTCTTTCCA
Found at i:126381 original size:44 final size:44
Alignment explanation
Indices: 126308--127483 Score: 307
Period size: 44 Copynumber: 26.7 Consensus size: 44
126298 TAAACTTTTC
* * * * * *
126308 TCATTTCGATCTAACATATAGTTATCACCCTAGTTAGATTCTTT
1 TCATTTCGATTTGACGTATGGTTACCACCCTAGTCAGATTCTTT
* *
126352 TCATTTCGATTTGACGTATGGTTACCACCCTAGTCAAATATGC--C
1 TCATTTCGATTTGACGTATGGTTACCACCCTAGTCAGAT-T-CTTT
* * * *
126396 TC-TTTCCTG-TCTAACGCATGGTTACCACCCTGGTCAGATTCTTT
1 TCATTT-C-GATTTGACGTATGGTTACCACCCTAGTCAGATTCTTT
* * * * *
126440 TCA-TTCTGATTTAACGTATGGTTACCAACCTGGTCAAATTCGCTT
1 TCATTTC-GATTTGACGTATGGTTACCACCCTAGTCAGATTC-TTT
* * * * * * *
126485 CCA-TCCTATTTGACGTATGGTTACTACCATGGTTAGATTCTTT
1 TCATTTCGATTTGACGTATGGTTACCACCCTAGTCAGATTCTTT
* * * * ***
126528 TCA-TTCTGATTTGACATATAGTTACCATCCTAGTCAAATTCGCC
1 TCATTTC-GATTTGACGTATGGTTACCACCCTAGTCAGATTCTTT
* * * * * *
126572 TCCTTCCTG-TCT-AGCGTATGGTGACCACCCTGGTCAAATTCTTT
1 TCATTTC-GATTTGA-CGTATGGTTACCACCCTAGTCAGATTCTTT
* * * * **
126616 AT-ATTTTGATTTGACGTATGGTTACCACCTTGGTCA-AATCTACC
1 -TCATTTCGATTTGACGTATGGTTACCACCCTAGTCAGATTCT-TT
* ** *
126660 TC-TATTCTATTTGATATATGGTTACCACCCTAGTCA-A-ACTTT
1 TCAT-TTCGATTTGACGTATGGTTACCACCCTAGTCAGATTCTTT
* * * * * *
126702 TCTTATTTCAATTTGATGTATAGTTGCCACCCTGGTTAGATTC-TT
1 TC--ATTTCGATTTGACGTATGGTTACCACCCTAGTCAGATTCTTT
* * **
126747 TCTATTTC-ATTTTGATGTATGGTTACCACCCTAGTCA-AATCTGCC
1 TC-ATTTCGA-TTTGACGTATGGTTACCACCCTAGTCAGATTCT-TT
* *
126792 TC-TTTCCTATTTGACGTATGGTTACCACCTTAG-CTAGATTCTTT
1 TCATTT-CGATTTGACGTATGGTTACCACCCTAGTC-AGATTCTTT
* * * * * * *
126836 ACATTTTGATTTAACGTATGGTTACCAACCTGGTCAAATCCTTCT
1 TCATTTCGATTTGACGTATGGTTACCACCCTAGTCAGATTCTT-T
* * * * ***
126881 AACCTTTTAACTGA-TTGACTTCAGTAGTT---TTGCT--T-AGATTCTTT
1 --TCATTT--C-GATTTGACGT-A-TGGTTACCACCCTAGTCAGATTCTTT
* * * **
126925 TCA-TTCTGATTTGACGTATGGTTACCACCTTGGTCA-AATCTACC
1 TCATTTC-GATTTGACGTATGGTTACCACCCTAGTCAGATTCT-TT
* * * * * *
126969 TC-TATTCTG-TTTAACGTAAGGTTACCACCTTGGTCAAACTT-TTC
1 TCAT-TTC-GATTTGACGTATGGTTACCACCCTAGTCAGA-TTCTTT
* * * * * *
127013 TCAATTTAG-TCTAATGTATGGTTACCACCCTAGTCATATTTTTT
1 TC-ATTTCGATTTGACGTATGGTTACCACCCTAGTCAGATTCTTT
* * * * * * **
127057 TCATTTCGATTTAACATATGGTTACTACCCTGGTTA-AATCTACC
1 TCATTTCGATTTGACGTATGGTTACCACCCTAGTCAGATTCT-TT
* * * * * * **
127101 TCTTTTCTATCTGACATATGGTTACCACCCTGGTCA-AATCTACC
1 TCATTTCGATTTGACGTATGGTTACCACCCTAGTCAGATTCT-TT
* * * * * * * *
127145 TC-TGTGCTATTTTATGTATAGTTACCACCTTGGTCAAACTT-TTT
1 TCAT-TTCGATTTGACGTATGGTTACCACCCTAGTCAGA-TTCTTT
* * * * *
127189 TCATTTTGATCTGACGTATGGTTACCACCATGGTCAAATTCTTT
1 TCATTTCGATTTGACGTATGGTTACCACCCTAGTCAGATTCTTT
* * * * * * *
127233 TCATTTTGATTTGACGTATGGTTATCACCATGGTTA-AATCTATC
1 TCATTTCGATTTGACGTATGGTTACCACCCTAGTCAGATTCT-TT
* * * * *
127277 TCTGTTTTG-TTTAACGTATGGTTACCACCCTAGTCAAACTT-TTC
1 TC-ATTTCGATTTGACGTATGGTTACCACCCTAGTCAGA-TTCTTT
* * *
127321 TCATTTCGATCTAATGTATGGTTACCACCCTAGTCA-ATTTCTTT
1 TCATTTCGATTTGACGTATGGTTACCACCCTAGTCAGA-TTCTTT
* * * * * **
127365 TTATTTCGATGTGATGTATGGTTACCATCCTAGTCA-AATCTGCC
1 TCATTTCGATTTGACGTATGGTTACCACCCTAGTCAGATTCT-TT
* * * *
127409 TC-TTTCCTG-TCTAACGTATGGTTACCACCTTGGTCAGATTCTTT
1 TCATTT-C-GATTTGACGTATGGTTACCACCCTAGTCAGATTCTTT
* * *
127453 TCA-TTCTAATTTGATGTATGGTTCCCACCCT
1 TCATTTC-GATTTGACGTATGGTTACCACCCT
127484 TGTTAAACCT
Statistics
Matches: 848, Mismatches: 210, Indels: 148
0.70 0.17 0.12
Matches are distributed among these distances:
38 4 0.00
39 5 0.01
40 6 0.01
41 3 0.00
42 4 0.00
43 68 0.08
44 671 0.79
45 62 0.07
46 7 0.01
47 4 0.00
48 2 0.00
49 5 0.01
50 3 0.00
51 4 0.00
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.41
Consensus pattern (44 bp):
TCATTTCGATTTGACGTATGGTTACCACCCTAGTCAGATTCTTT
Found at i:126466 original size:88 final size:88
Alignment explanation
Indices: 126317--126654 Score: 385
Period size: 88 Copynumber: 3.8 Consensus size: 88
126307 CTCATTTCGA
* * * * *
126317 TCTAACATATAGTTATCACCCTAGTTAGATTCTTTTCATT-TCGATTTGACGTATGGTTACCACC
1 TCTAACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCT-GATTTGACGTATGGTTACCACC
*
126381 CTAGTCAAATAT-GCCTCTTTCCTG
65 CTAGTCAAAT-TCGCCTCCTTCCTG
* * *
126405 TCTAACGCATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTAACGTATGGTTACCAACC
1 TCTAACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCC
* * * *
126470 TGGTCAAATTCGCTTCCATCCTA
66 TAGTCAAATTCGCCTCCTTCCTG
* * * * * * * *
126493 TTTGACGTATGGTTACTACCATGGTTAGATTCTTTTCATTCTGATTTGACATATAGTTACCATCC
1 TCTAACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCC
126558 TAGTCAAATTCGCCTCCTTCCTG
66 TAGTCAAATTCGCCTCCTTCCTG
* * * *
126581 TCTAGCGTATGGTGACCACCCTGGTCAAATTCTTTAT-ATTTTGATTTGACGTATGGTTACCACC
1 TCTAACGTATGGTTACCACCCTGGTCAGATTCTTT-TCATTCTGATTTGACGTATGGTTACCACC
* *
126645 TTGGTCAAAT
65 CTAGTCAAAT
126655 CTACCTCTAT
Statistics
Matches: 206, Mismatches: 41, Indels: 6
0.81 0.16 0.02
Matches are distributed among these distances:
87 1 0.00
88 203 0.99
89 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (88 bp):
TCTAACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCC
TAGTCAAATTCGCCTCCTTCCTG
Found at i:126672 original size:176 final size:176
Alignment explanation
Indices: 126340--126684 Score: 468
Period size: 176 Copynumber: 2.0 Consensus size: 176
126330 TATCACCCTA
* * *
126340 GTTAGATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGTCAAATATGCCTCTTTCCTG
1 GTTAGATTCTTTTCATTTCGATTTGACATATAGTTACCACCCTAGTCAAATATGCCTCCTTCCTG
* *
126405 TCTAACGCATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTAACGTATGGTTACCAACC
66 TCTAACGCATGGTGACCACCCTGGTCAAATTCTTTTCATTCTGATTTAACGTATGGTTACCAACC
*
126470 TGGTCAAATTCGCTTCCATCCTATTTGACGTATGGTTACTACCATG
131 TGGTCAAATTCGCTTCCATCCTATTTGACATATGGTTACTACCATG
*
126516 GTTAGATTCTTTTCA-TTCTGATTTGACATATAGTTACCATCCTAGTCAAAT-TCGCCTCCTTCC
1 GTTAGATTCTTTTCATTTC-GATTTGACATATAGTTACCACCCTAGTCAAATAT-GCCTCCTTCC
* * * *
126579 TGTCTAGCGTATGGTGACCACCCTGGTCAAATTCTTTAT-ATTTTGATTTGACGTATGGTTACC-
64 TGTCTAACGCATGGTGACCACCCTGGTCAAATTCTTT-TCATTCTGATTTAACGTATGGTTACCA
* * *
126642 ACCTTGGTCAAATCTAC-C-TCTATTCTATTTGATATATGGTTAC
128 ACC-TGGTCAAAT-T-CGCTTCCATCCTATTTGACATATGGTTAC
126685 CACCCTAGTC
Statistics
Matches: 149, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
175 7 0.05
176 138 0.93
177 3 0.02
178 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.39
Consensus pattern (176 bp):
GTTAGATTCTTTTCATTTCGATTTGACATATAGTTACCACCCTAGTCAAATATGCCTCCTTCCTG
TCTAACGCATGGTGACCACCCTGGTCAAATTCTTTTCATTCTGATTTAACGTATGGTTACCAACC
TGGTCAAATTCGCTTCCATCCTATTTGACATATGGTTACTACCATG
Found at i:126726 original size:176 final size:176
Alignment explanation
Indices: 126321--126734 Score: 457
Period size: 176 Copynumber: 2.4 Consensus size: 176
126311 TTTCGATCTA
* * * * * *
126321 ACATATAGTTATCACCCTAGTTAGATTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTAGT
1 ACATATGGTTACCACCATAGTCAAATTCTTTTCATTTCGATTTGACGTATAGTTACCACCCTAGT
* * *
126386 CAAATATGCCTCTTTCCTGTCTAACGCATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATT
66 CAAATATGCCTCCTTCCTGTCTAACGCATGGTGACCACCCTGGTCAAATTCTTTTCATTCTGATT
126451 TAACGTATGGTTACCAACCTGGTCAAATTCGCTTCCATCCTATTTG
131 TAACGTATGGTTACCAACCTGGTCAAATTCGCTTCCATCCTATTTG
* * * * * * *
126497 ACGTATGGTTACTACCATGGTTAGATTCTTTTCA-TTCTGATTTGACATATAGTTACCATCCTAG
1 ACATATGGTTACCACCATAGTCAAATTCTTTTCATTTC-GATTTGACGTATAGTTACCACCCTAG
* * *
126561 TCAAAT-TCGCCTCCTTCCTGTCTAGCGTATGGTGACCACCCTGGTCAAATTCTTTAT-ATTTTG
65 TCAAATAT-GCCTCCTTCCTGTCTAACGCATGGTGACCACCCTGGTCAAATTCTTT-TCATTCTG
* * *
126624 ATTTGACGTATGGTTACC-ACCTTGGTCAAATCTAC-C-TCTATTCTATTTG
128 ATTTAACGTATGGTTACCAACC-TGGTCAAAT-T-CGCTTCCATCCTATTTG
* * * * *
126673 ATATATGGTTACCACCCTAGTCAAA--CTTTTCTTATTTCAATTTGATGTATAGTTGCCACCCT
1 ACATATGGTTACCACCATAGTCAAATTCTTTTC--ATTTCGATTTGACGTATAGTTACCACCCT
126735 GGTTAGATTC
Statistics
Matches: 199, Mismatches: 30, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
174 6 0.03
175 7 0.04
176 179 0.90
177 6 0.03
178 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (176 bp):
ACATATGGTTACCACCATAGTCAAATTCTTTTCATTTCGATTTGACGTATAGTTACCACCCTAGT
CAAATATGCCTCCTTCCTGTCTAACGCATGGTGACCACCCTGGTCAAATTCTTTTCATTCTGATT
TAACGTATGGTTACCAACCTGGTCAAATTCGCTTCCATCCTATTTG
Found at i:127142 original size:176 final size:176
Alignment explanation
Indices: 126936--127314 Score: 478
Period size: 176 Copynumber: 2.2 Consensus size: 176
126926 CATTCTGATT
* * *
126936 TGACGTATGGTTACCACCTTGGTCAAATCTACCTCTATTCTGTTTAACGTA-AGGTTACCACCTT
1 TGACGTATGGTTACCACCCTGGTCAAATCTACCTCTATGCTATTTAACGTATA-GTTACCACCTT
* * * *
127000 GGTCAAACTTTTCTCAATTTAG-TCTAATGTATGGTTACCACCCTAGTCATATTTTTTTCATTTC
65 GGTCAAACTTTTCTC-ATTTAGATCTAACGTATGGTTACCACCATAGTCAAATTCTTTTCATTTC
*
127064 GATTTAACATATGGTTA-CTACCCTGGTTAAATCTACCTCT-TTTCTATC
129 GATTTAACATATGGTTATC-ACCATGGTTAAATCTACCTCTGTTT-TATC
* * * *
127112 TGACATATGGTTACCACCCTGGTCAAATCTACCTCTGTGCTATTTTATGTATAGTTACCACCTTG
1 TGACGTATGGTTACCACCCTGGTCAAATCTACCTCTATGCTATTTAACGTATAGTTACCACCTTG
* * * * *
127177 GTCAAACTTTTTTCATTTTGATCTGACGTATGGTTACCACCATGGTCAAATTCTTTTCATTTTGA
66 GTCAAACTTTTCTCATTTAGATCTAACGTATGGTTACCACCATAGTCAAATTCTTTTCATTTCGA
* * * * *
127242 TTTGACGTATGGTTATCACCATGGTTAAATCTATCTCTGTTTTGTT
131 TTTAACATATGGTTATCACCATGGTTAAATCTACCTCTGTTTTATC
* *
127288 TAACGTATGGTTACCACCCTAGTCAAA
1 TGACGTATGGTTACCACCCTGGTCAAA
127315 CTTTTCTCAT
Statistics
Matches: 174, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
175 5 0.03
176 164 0.94
177 5 0.03
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.41
Consensus pattern (176 bp):
TGACGTATGGTTACCACCCTGGTCAAATCTACCTCTATGCTATTTAACGTATAGTTACCACCTTG
GTCAAACTTTTCTCATTTAGATCTAACGTATGGTTACCACCATAGTCAAATTCTTTTCATTTCGA
TTTAACATATGGTTATCACCATGGTTAAATCTACCTCTGTTTTATC
Found at i:127457 original size:132 final size:130
Alignment explanation
Indices: 127028--127483 Score: 396
Period size: 132 Copynumber: 3.5 Consensus size: 130
127018 TTAGTCTAAT
* * * * * * ** * * *
127028 GTATGGTTACCACCCTAGTCATATTTTTTTCATTTCGATTTAACATATGGTTACTACCCTGGTTA
1 GTATGGTTACCACCTTGGTCAAACTTTTTTCATTTCGATCTGATGTATGGTTACCACCCTAGTCA
** * * * * * *
127093 AA-TCTACCTCTTTTCTATCTGACATATGGTTACCACCCTGGTCAAATCTACCTCTGTGCTATTT
66 AATTCT-TTTCATTTCGATGTGACGTATGGTTACCA-CCTGGTCAAATCTACCTCT-TTCTGTTT
* *
127157 TAT
128 AAC
* * * * *
127160 GTATAGTTACCACCTTGGTCAAACTTTTTTCATTTTGATCTGACGTATGGTTACCACCATGGTCA
1 GTATGGTTACCACCTTGGTCAAACTTTTTTCATTTCGATCTGATGTATGGTTACCACCCTAGTCA
* * * * * *
127225 AATTCTTTTCATTTTGATTTGACGTATGGTTATCACCATGGTTAAATCTATCTCTGTTTTGTTTA
66 AATTCTTTTCATTTCGATGTGACGTATGGTTACCACC-TGGTCAAATCTACCTCT-TTCTGTTTA
127290 AC
129 AC
* * * *
127292 GTATGGTTACCACCCTAGTCAAACTTTTCTCATTTCGATCTAATGTATGGTTACCACCCTAGTCA
1 GTATGGTTACCACCTTGGTCAAACTTTTTTCATTTCGATCTGATGTATGGTTACCACCCTAGTCA
* * * * * *
127357 ATTTCTTTTTATTTCGATGTGATGTATGGTTACCATCCTAGTCAAATCTGCCTCTTTCCTGTCTA
66 AATTCTTTTCATTTCGATGTGACGTATGGTTACCA-CCTGGTCAAATCTACCTCTTT-CTGTTTA
127422 AC
129 AC
* * * *
127424 GTATGGTTACCACCTTGGTCAGA-TTCTTTTCA-TTCTAATTTGATGTATGGTTCCCACCCT
1 GTATGGTTACCACCTTGGTCAAACTT-TTTTCATTTC-GATCTGATGTATGGTTACCACCCT
127484 TGTTAAACCT
Statistics
Matches: 262, Mismatches: 56, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
131 9 0.03
132 248 0.95
133 5 0.02
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.42
Consensus pattern (130 bp):
GTATGGTTACCACCTTGGTCAAACTTTTTTCATTTCGATCTGATGTATGGTTACCACCCTAGTCA
AATTCTTTTCATTTCGATGTGACGTATGGTTACCACCTGGTCAAATCTACCTCTTTCTGTTTAAC
Found at i:127527 original size:20 final size:21
Alignment explanation
Indices: 127489--127529 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
127479 ACCCTTGTTA
*
127489 AACCTTTCTAACCCTTTGACT
1 AACCTTTCTAACCCATTGACT
*
127510 AACCTTT-TAACCGATTGACT
1 AACCTTTCTAACCCATTGACT
127530 TCATCGGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.27, C:0.29, G:0.07, T:0.37
Consensus pattern (21 bp):
AACCTTTCTAACCCATTGACT
Found at i:127619 original size:101 final size:101
Alignment explanation
Indices: 127444--127692 Score: 336
Period size: 101 Copynumber: 2.5 Consensus size: 101
127434 CACCTTGGTC
** * * * * *
127444 AGATTCTTTTCATTCTAATTTGATGTATGGTTCCCACCCTTGTTAAACCTTTCTAACCCTTTGAC
1 AGATTCTTTTCATTCTAATTTGACATATGGTTACCACCCTGGTCAAACCCTTCGAACCCTTTGAC
*
127509 TAACCTTTTAACCGATTGACTTCATCGGTTTTGCTT
66 TAACCTTTTAACCGATTGACTTCATCAGTTTTGCTT
* * * * *
127545 AGATTCTTTTCATTCTGATTCGACATATGGTTACCTCCCTGGTCAAACCCTTCGAACCCTTTTAT
1 AGATTCTTTTCATTCTAATTTGACATATGGTTACCACCCTGGTCAAACCCTTCGAACCCTTTGAC
* *
127610 TAACCTTTTAACTGATTGACTTTATCAGTTTTGCTT
66 TAACCTTTTAACCGATTGACTTCATCAGTTTTGCTT
* * *
127646 AGATTCTTTTCATTCTAATTTGACTTATGGTTACCAACTTGGTCAAA
1 AGATTCTTTTCATTCTAATTTGACATATGGTTACCACCCTGGTCAAA
127693 TCCGCTTCCA
Statistics
Matches: 127, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
101 127 1.00
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.43
Consensus pattern (101 bp):
AGATTCTTTTCATTCTAATTTGACATATGGTTACCACCCTGGTCAAACCCTTCGAACCCTTTGAC
TAACCTTTTAACCGATTGACTTCATCAGTTTTGCTT
Found at i:127755 original size:44 final size:44
Alignment explanation
Indices: 127644--127864 Score: 137
Period size: 44 Copynumber: 5.0 Consensus size: 44
127634 TCAGTTTTGC
* * * *
127644 TTAGATTCTTTTCATTCTAATTTGACT-TATGGTTACCAACTTGG
1 TTAGATTCTTTTCATTCTGATTTGA-TGTATGGTTACCACCCTAG
* * * * * *
127688 TCAAATCCGCTTCCATCCT-ATTTGATGTATGGTTACCACCCTAG
1 TTAGATTC-TTTTCATTCTGATTTGATGTATGGTTACCACCCTAG
* *
127732 TTAGATTCTTTTCATTCTGATTTGATGTATAGTTACTACCCTAG
1 TTAGATTCTTTTCATTCTGATTTGATGTATGGTTACCACCCTAG
* * *** * * ** * *
127776 TCAAATTCGCCT-ACTTCTTG-TCTAACATATGGTTACCA-CTTTG
1 TTAGATTCTTTTCA-TTC-TGATTTGATGTATGGTTACCACCCTAG
* *
127819 TTCAGATTCTTTTTATTCTGATTTGATGTATGGTTACCACCATAG
1 TT-AGATTCTTTTCATTCTGATTTGATGTATGGTTACCACCCTAG
127864 T
1 T
127865 CAAACCCTTC
Statistics
Matches: 127, Mismatches: 41, Indels: 17
0.69 0.22 0.09
Matches are distributed among these distances:
43 15 0.12
44 98 0.77
45 14 0.11
ACGTcount: A:0.23, C:0.20, G:0.14, T:0.43
Consensus pattern (44 bp):
TTAGATTCTTTTCATTCTGATTTGATGTATGGTTACCACCCTAG
Found at i:127994 original size:378 final size:378
Alignment explanation
Indices: 127334--128070 Score: 1061
Period size: 378 Copynumber: 1.9 Consensus size: 378
127324 TTTCGATCTA
* * *
127334 ATGTATGGTTACCACCCTAGTCAATTTCTTTTTATTTCGATGTGATGTATGGTTACCATCCTAGT
1 ATGTATGGTTACCACCCTAGTCAATTTCTTTTCATTTCGATGTGATGTATAGTTACCACCCTAGT
*
127399 CAAATCTGCCTCTTTCCTGTCTAACGTATGGTTACCACCTTGGTCAGATTCTTTTCATTCTAATT
66 CAAATCTGCCTCTTTCCTGTCTAACATATGGTTACCACCTTGGTCAGATTCTTTTCATTCTAATT
* * * * * * *
127464 TGATGTATGGTTCCCACCCTTGTTAAACCTTTCTAACCCTTTGACTAACCTTTTAACCGATTGAC
131 TGATGTATGGTTACCACCATAGTCAAACCCTTCTAACCCTTTGACTAACCTTTCAACCAATTGAC
* * * *
127529 TTCATCGGTTTTGCTTAGATTCTTTTCATTCTGATTCGACATATGGTTACCTCCCTGGTCAAACC
196 TTCATCAGTCTTGCTTAGATTCTTTTCATTCTGATTCGACATATAGTTACCGCCCTGGTCAAACC
* * * * * *
127594 CTTCGAACCCTTTTATTAACCTTTTAACTGATTGACTTTATCAGTTTTGCTTAGATTCTTTTCAT
261 CTTCGAACCCTTTGACTAACCTTTTAACTAATTGACTTCATCAGTTTTGCTCAAATTCTTTTCAT
* *
127659 TCTAATTTGACTTATGGTTACCAACTTGGTCAAATCCGCTTCCATCCTATTTG
326 TCTAATTTGACGTATGGTTACCAACATGGTCAAATCCGCTTCCATCCTATTTG
* * *
127712 ATGTATGGTTACCACCCTAGTTAGA-TTCTTTTCA-TTCTGATTTGATGTATAGTTACTACCCTA
1 ATGTATGGTTACCACCCTAGTCA-ATTTCTTTTCATTTC-GATGTGATGTATAGTTACCACCCTA
* * * *
127775 GTCAAAT-TCGCCTAC-TTCTTGTCTAACATATGGTTACCACTTTGTTCAGATTCTTTTTATTCT
64 GTCAAATCT-GCCT-CTTTCCTGTCTAACATATGGTTACCACCTTGGTCAGATTCTTTTCATTCT
* *
127838 GATTTGATGTATGGTTACCACCATAGTCAAACCCTTCTAACCCTTTGACTAACCTTTCAACTAAT
127 AATTTGATGTATGGTTACCACCATAGTCAAACCCTTCTAACCCTTTGACTAACCTTTCAACCAAT
* * *
127903 TGACTTCATTAGTCTTGCTTAGATTC-TTTCATTCTGATTTGACATATAGTTATCCGCCTTGGTC
192 TGACTTCATCAGTCTTGCTTAGATTCTTTTCATTCTGATTCGACATATAGTTA-CCGCCCTGGTC
*
127967 AAACCCTTCTAACCCTTTGACTAACCTTTTAACTAATTGACTTCATCAGTTTTGCTCAAATTCTT
256 AAACCCTTCGAACCCTTTGACTAACCTTTTAACTAATTGACTTCATCAGTTTTGCTCAAATTCTT
*
128032 TTCATTCTAATTTGACGTATGGTTACCACCATGGTCAAA
321 TTCATTCTAATTTGACGTATGGTTACCAACATGGTCAAA
128071 CCTCTCTAAC
Statistics
Matches: 317, Mismatches: 37, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
377 28 0.09
378 287 0.91
379 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.42
Consensus pattern (378 bp):
ATGTATGGTTACCACCCTAGTCAATTTCTTTTCATTTCGATGTGATGTATAGTTACCACCCTAGT
CAAATCTGCCTCTTTCCTGTCTAACATATGGTTACCACCTTGGTCAGATTCTTTTCATTCTAATT
TGATGTATGGTTACCACCATAGTCAAACCCTTCTAACCCTTTGACTAACCTTTCAACCAATTGAC
TTCATCAGTCTTGCTTAGATTCTTTTCATTCTGATTCGACATATAGTTACCGCCCTGGTCAAACC
CTTCGAACCCTTTGACTAACCTTTTAACTAATTGACTTCATCAGTTTTGCTCAAATTCTTTTCAT
TCTAATTTGACGTATGGTTACCAACATGGTCAAATCCGCTTCCATCCTATTTG
Found at i:128001 original size:101 final size:101
Alignment explanation
Indices: 127820--128171 Score: 440
Period size: 101 Copynumber: 3.5 Consensus size: 101
127810 ACCACTTTGT
* * *
127820 TCAGATTCTTTTTATTCTGATTTGATGTATGGTTACCACCATAGTCAAACCCTTCTAACCCTTTG
1 TCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCATGGTCAAACCCTTCTAACCCTTTG
* *
127885 ACTAACCTTTCAACTAATTGACTTCATTAGTCTTGC
66 ACTAACCTTTTAACTAATTGACTTCATCAGTCTTGC
* * * * *
127921 TTAGATTC-TTTCATTCTGATTTGACATATAGTTATCCGCCTTGGTCAAACCCTTCTAACCCTTT
1 TCAGATTCTTTTCATTCTGATTTGACGTATGGTTA-CCACCATGGTCAAACCCTTCTAACCCTTT
*
127985 GACTAACCTTTTAACTAATTGACTTCATCAGTTTTGC
65 GACTAACCTTTTAACTAATTGACTTCATCAGTCTTGC
* *
128022 TCAAATTCTTTTCATTCTAATTTGACGTATGGTTACCACCATGGTCAAA-CCTCTCTAACCCTTT
1 TCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCATGGTCAAACCCT-TCTAACCCTTT
* * * * *
128086 AACTAA-CTTTTAATTGATTGACTTCATCGGTTTTGC
65 GACTAACCTTTTAACTAATTGACTTCATCAGTCTTGC
* * * * * *
128122 TCAGATTTTTTTTCATTTTGATTTGATGTATGGTTATCACCCTAGTCAAA
1 TCAGA-TTCTTTTCATTCTGATTTGACGTATGGTTACCACCATGGTCAAA
128172 TCTACCTATG
Statistics
Matches: 217, Mismatches: 30, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
100 56 0.26
101 138 0.64
102 23 0.11
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.42
Consensus pattern (101 bp):
TCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCATGGTCAAACCCTTCTAACCCTTTG
ACTAACCTTTTAACTAATTGACTTCATCAGTCTTGC
Found at i:128302 original size:132 final size:131
Alignment explanation
Indices: 128122--128471 Score: 447
Period size: 132 Copynumber: 2.7 Consensus size: 131
128112 TCGGTTTTGC
* * * * *
128122 TCAGATTTTTTTTCATTTTGATTTGATGTATGGTTATCACCCTAGTCAAATCTACCTATGTTCTC
1 TCAGA-TTCTTTTCATTTTGATTTGACGTATGGTTATCACCCTGGTCAAATCTACCTATATTCTA
* * * * *
128187 TTTGACGTATGGTTACCACCAC-AGTCAAACTTTTCTCATTTCGATTTGACGTATGGTTACCACC
65 TTTGAAGTATGGTTACCACC-CTACTCAAACGTTTCTCATTTCGATCTGACGTATGCTT-CCACC
128251 TTGG
128 TTGG
* * * *
128255 TCAGATTCTTTTCATTTTGATTTGACGTATGGTTATCACCTTGGTCAAATTTGCCTCTATTCTAT
1 TCAGATTCTTTTCATTTTGATTTGACGTATGGTTATCACCCTGGTCAAATCTACCTATATTCTAT
*
128320 TTGAAGTATGGTTACCACCCTACTCAAACGTTTCTCATTTCGGTCTGACGTATGCTTCCACCTTG
66 TTGAAGTATGGTTACCACCCTACTCAAACGTTTCTCATTTCGATCTGACGTATGCTTCCACCTTG
128385 G
131 G
* * * *
128386 TCAAATTCTTTTCATTTTGATTTGACGTATGGTTACCACCCTGGTCAAAT-T-CTTTTCATTCTG
1 TCAGATTCTTTTCATTTTGATTTGACGTATGGTTATCACCCTGGTCAAATCTACCTAT-ATTCT-
128449 ATTT-AATGTATGGTTACCACCCT
64 ATTTGAA-GTATGGTTACCACCCT
128472 GGGCAAACCT
Statistics
Matches: 193, Mismatches: 20, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
129 3 0.02
130 8 0.04
131 77 0.40
132 100 0.52
133 5 0.03
ACGTcount: A:0.21, C:0.22, G:0.15, T:0.42
Consensus pattern (131 bp):
TCAGATTCTTTTCATTTTGATTTGACGTATGGTTATCACCCTGGTCAAATCTACCTATATTCTAT
TTGAAGTATGGTTACCACCCTACTCAAACGTTTCTCATTTCGATCTGACGTATGCTTCCACCTTG
G
Found at i:128436 original size:44 final size:44
Alignment explanation
Indices: 128131--128478 Score: 293
Period size: 44 Copynumber: 7.9 Consensus size: 44
128121 CTCAGATTTT
* * *
128131 TTTTCATTTTGATTTGATGTATGGTTATCACCCTAGTCAAA-TC
1 TTTTCATTTTGATTTGACGTATGGTTACCACCCTGGTCAAATTC
** * *
128174 -TACCTATGTTCT-CTTTGACGTATGGTTACCACCAC-AGTCAAACTT-
1 TTTTC-AT-TT-TGATTTGACGTATGGTTACCACC-CTGGTCAAA-TTC
* * * *
128219 TTCTCATTTCGATTTGACGTATGGTTACCACCTTGGTCAGATTC
1 TTTTCATTTTGATTTGACGTATGGTTACCACCCTGGTCAAATTC
* *
128263 TTTTCATTTTGATTTGACGTATGGTTATCACCTTGGTCAAATT-
1 TTTTCATTTTGATTTGACGTATGGTTACCACCCTGGTCAAATTC
** * * **
128306 TGCCTCTATTCT-ATTTGAAGTATGGTTACCACCCTACTCAAA--C
1 T-TTTC-ATTTTGATTTGACGTATGGTTACCACCCTGGTCAAATTC
* * * * *
128349 GTTTCTCATTTCGGTCTGACGTATGCTT-CCACCTTGGTCAAATTC
1 -TTT-TCATTTTGATTTGACGTATGGTTACCACCCTGGTCAAATTC
128394 TTTTCATTTTGATTTGACGTATGGTTACCACCCTGGTCAAATTC
1 TTTTCATTTTGATTTGACGTATGGTTACCACCCTGGTCAAATTC
* * * *
128438 TTTTCATTCTGATTTAATGTATGGTTACCACCCTGGGCAAA
1 TTTTCATTTTGATTTGACGTATGGTTACCACCCTGGTCAAA
128479 CCTTCTAACC
Statistics
Matches: 242, Mismatches: 44, Indels: 37
0.75 0.14 0.11
Matches are distributed among these distances:
42 2 0.01
43 38 0.16
44 190 0.79
45 9 0.04
46 3 0.01
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (44 bp):
TTTTCATTTTGATTTGACGTATGGTTACCACCCTGGTCAAATTC
Found at i:128777 original size:42 final size:42
Alignment explanation
Indices: 128717--129366 Score: 437
Period size: 42 Copynumber: 15.7 Consensus size: 42
128707 TACCTCTCGA
* * *
128717 TTTGACCCTATAGACTTTTTTACCTTTAGTTTGTCGATCGGC
1 TTTGACCCTAGAGACTTTTTTACCTTTAGTTTGCCTATCGGC
* **
128759 TTTGACCCTAGAGGCTTTTTTACCTTTAGTTTGCCTATCGAT
1 TTTGACCCTAGAGACTTTTTTACCTTTAGTTTGCCTATCGGC
* * *
128801 TTTGACCCTAGAGGCTTTTTTACCTTTAGTCTGCCTATTGGC
1 TTTGACCCTAGAGACTTTTTTACCTTTAGTTTGCCTATCGGC
* * * * * * * *
128843 TTTGACCTTGGAGACTTCTTTACCTTTA-TCTACTTGTCAGC
1 TTTGACCCTAGAGACTTTTTTACCTTTAGTTTGCCTATCGGC
* * * * * * * *
128884 TTTGACCTTGGAGA-TTTCCTTACCTCTAGTCTACCTGTCAGC
1 TTTGACCCTAGAGACTTT-TTTACCTTTAGTTTGCCTATCGGC
* * ** *
128926 TTTGATCCTAGAAACTTTCGTACCATTAGTTTGCCTATCGGC
1 TTTGACCCTAGAGACTTTTTTACCTTTAGTTTGCCTATCGGC
* * * *
128968 TTTAACCTTGGAGACTTCTTTATCCTTTAGTTTG-CT-T--G-
1 TTTGACCCTAGAGACTTTTTTA-CCTTTAGTTTGCCTATCGGC
* ** * ** * * **
129006 --TG----GAGA-CTTCTTTACCTTTTAGTCTGCCTATCGAT
1 TTTGACCCTAGAGACTTTTTTACCTTTAGTTTGCCTATCGGC
* * * * * *
129041 TTTGACCCTTGAGACTTCTTTATCTTTTAGTCTGCCTGTCGAC
1 TTTGACCCTAGAGACTTTTTTA-CCTTTAGTTTGCCTATCGGC
* * * * * *
129084 TTTGACCTTGGAGACTTCTTTACATTTAGTTTGCCTGTCGAC
1 TTTGACCCTAGAGACTTTTTTACCTTTAGTTTGCCTATCGGC
* * *
129126 TTTGACCTTAGAGACTTCTTTACCTTTAGTCTGCCTATCGGC
1 TTTGACCCTAGAGACTTTTTTACCTTTAGTTTGCCTATCGGC
* * * *
129168 TTTGACCTTGGAGACTTCTTTACCTTTAGTCTGCCTATCGGC
1 TTTGACCCTAGAGACTTTTTTACCTTTAGTTTGCCTATCGGC
* * * * * *
129210 TTTGACCTTGGAGACTTCTTTACCTTTAGTCTGGCTATCGGT
1 TTTGACCCTAGAGACTTTTTTACCTTTAGTTTGCCTATCGGC
* * * * ** *
129252 TTTGACCTTGGAGACTTTTTTACCTTTAGTCTGCTTGCCGAC
1 TTTGACCCTAGAGACTTTTTTACCTTTAGTTTGCCTATCGGC
* * *
129294 TTTGACCCTAGAGACTTCTTTACCTTTAGTCTGCTTATCGGC
1 TTTGACCCTAGAGACTTTTTTACCTTTAGTTTGCCTATCGGC
* * *
129336 TTTGACTCTAAAGACTTCTTTACCTTTAGTT
1 TTTGACCCTAGAGACTTTTTTACCTTTAGTT
129367 GGTCTGGAGA
Statistics
Matches: 498, Mismatches: 93, Indels: 34
0.80 0.15 0.05
Matches are distributed among these distances:
30 9 0.02
31 5 0.01
32 3 0.01
36 1 0.00
37 2 0.00
39 1 0.00
40 2 0.00
41 33 0.07
42 391 0.79
43 51 0.10
ACGTcount: A:0.16, C:0.24, G:0.17, T:0.43
Consensus pattern (42 bp):
TTTGACCCTAGAGACTTTTTTACCTTTAGTTTGCCTATCGGC
Found at i:128844 original size:84 final size:84
Alignment explanation
Indices: 128689--129365 Score: 567
Period size: 84 Copynumber: 8.2 Consensus size: 84
128679 AACCTTTCTA
* * * * * * * *
128689 ACTTCTTTACTTTTAGTCTACCTCTCGA-TTTGACCCTATAGACTTTTTTACCTTTAGTTTGTCG
1 ACTTCTTTACCTTTAGTCTGCCTATCGACTTTGACCCTAGAGACTTCTTTACCTTTAGTCTGCCT
*
128753 ATCGGCTTTGACCCTAGAG
66 ATCGGCTTTGACCCTGGAG
* * * * * *
128772 GCTTTTTTACCTTTAGTTTGCCTATCGATTTTGACCCTAGAGGCTTTTTTACCTTTAGTCTGCCT
1 ACTTCTTTACCTTTAGTCTGCCTATCGACTTTGACCCTAGAGACTTCTTTACCTTTAGTCTGCCT
* *
128837 ATTGGCTTTGACCTTGGAG
66 ATCGGCTTTGACCCTGGAG
* * * * * * * * *
128856 ACTTCTTTACCTTTA-TCTACTTGTC-AGCTTTGACCTTGGAGATTTCCTTACCTCTAGTCTACC
1 ACTTCTTTACCTTTAGTCTGCCTATCGA-CTTTGACCCTAGAGACTTCTTTACCTTTAGTCTGCC
* * * * *
128919 TGTCAGCTTTGATCCTAGAA
65 TATCGGCTTTGACCCTGGAG
* * * * * * * *
128939 ACTT-TCGTACCATTAGTTTGCCTATCGGCTTTAACCTTGGAGACTTCTTTATCCTTTAGTTTG-
1 ACTTCT-TTACCTTTAGTCTGCCTATCGACTTTGACCCTAGAGACTTCTTTA-CCTTTAGTCTGC
* **
129002 CT-T--G--TGGAGACT----
64 CTATCGGCTTTGACCCTGGAG
* ** * * * *
129014 TC-T-TTACCTTTTAGTCTGCCTATCGATTTTGACCCTTGAGACTTCTTTATCTTTTAGTCTGCC
1 ACTTCTTTACCTTTAGTCTGCCTATCGACTTTGACCCTAGAGACTTCTTTA-CCTTTAGTCTGCC
* * *
129077 TGTCGACTTTGACCTTGGAG
65 TATCGGCTTTGACCCTGGAG
* * * *
129097 ACTTCTTTACATTTAGTTTGCCTGTCGACTTTGACCTTAGAGACTTCTTTACCTTTAGTCTGCCT
1 ACTTCTTTACCTTTAGTCTGCCTATCGACTTTGACCCTAGAGACTTCTTTACCTTTAGTCTGCCT
*
129162 ATCGGCTTTGACCTTGGAG
66 ATCGGCTTTGACCCTGGAG
* * * *
129181 ACTTCTTTACCTTTAGTCTGCCTATCGGCTTTGACCTTGGAGACTTCTTTACCTTTAGTCTGGCT
1 ACTTCTTTACCTTTAGTCTGCCTATCGACTTTGACCCTAGAGACTTCTTTACCTTTAGTCTGCCT
* *
129246 ATCGGTTTTGACCTTGGAG
66 ATCGGCTTTGACCCTGGAG
* * ** *
129265 ACTTTTTTACCTTTAGTCTGCTTGCCGACTTTGACCCTAGAGACTTCTTTACCTTTAGTCTGCTT
1 ACTTCTTTACCTTTAGTCTGCCTATCGACTTTGACCCTAGAGACTTCTTTACCTTTAGTCTGCCT
* **
129330 ATCGGCTTTGACTCTAAAG
66 ATCGGCTTTGACCCTGGAG
129349 ACTTCTTTACCTTTAGT
1 ACTTCTTTACCTTTAGT
129366 TGGTCTGGAG
Statistics
Matches: 471, Mismatches: 105, Indels: 35
0.77 0.17 0.06
Matches are distributed among these distances:
73 44 0.09
74 4 0.01
75 2 0.00
79 9 0.02
81 1 0.00
82 2 0.00
83 81 0.17
84 282 0.60
85 46 0.10
ACGTcount: A:0.17, C:0.24, G:0.17, T:0.43
Consensus pattern (84 bp):
ACTTCTTTACCTTTAGTCTGCCTATCGACTTTGACCCTAGAGACTTCTTTACCTTTAGTCTGCCT
ATCGGCTTTGACCCTGGAG
Found at i:128865 original size:126 final size:125
Alignment explanation
Indices: 128689--129622 Score: 721
Period size: 126 Copynumber: 7.6 Consensus size: 125
128679 AACCTTTCTA
* * * * * ** *
128689 ACTTCTTTACTTTTAGTCTACCTCTC-GATTTGACCCTATAGACTTTTTTACCTTTAGTTTGTCG
1 ACTTCTTTACCTTTAGTCTGCCTATCGGCTTTGACCTTGGAGACTTCTTTACCTTTAGTTTGTCG
* * * * *
128753 ATCGGCTTTGACCCTAGAGGCTTTTTTACCTTTAGTTTGCCTATCGATTTTGACCCTAGAG
66 -TCGGCTTTGACCTTGGAGACTTTTTTACCTTTAGTCTGCCTATCGACTTTGACCCTAGAG
* * * ** *
128814 GCTTTTTTACCTTTAGTCTGCCTATTGGCTTTGACCTTGGAGACTTCTTTACCTTTA-TCTACTT
1 ACTTCTTTACCTTTAGTCTGCCTATCGGCTTTGACCTTGGAGACTTCTTTACCTTTAGT-TTGTC
* * * * * * *
128878 GTCAGCTTTGACCTTGGAGA-TTTCCTTACCTCTAGTCTACCTGTC-AGCTTTGATCCTAGAA
65 GTCGGCTTTGACCTTGGAGACTTT-TTTACCTTTAGTCTGCCTATCGA-CTTTGACCCTAGAG
* * * *
128939 ACTT-TCGTACCATTAGTTTGCCTATCGGCTTTAACCTTGGAGACTTCTTTATCCTTTAG--T-T
1 ACTTCT-TTACCTTTAGTCTGCCTATCGGCTTTGACCTTGGAGACTTCTTTA-CCTTTAGTTTGT
* * *
129000 --T--GC-TTG----TGGAGACTTCTTTACCTTTTAGTCTGCCTATCGATTTTGACCCTTGAG
64 CGTCGGCTTTGACCTTGGAGACTTTTTTACC-TTTAGTCTGCCTATCGACTTTGACCCTAGAG
* * * * *
129054 ACTTCTTTATCTTTTAGTCTGCCTGTCGACTTTGACCTTGGAGACTTCTTTACATTTAGTTTGCC
1 ACTTCTTTA-CCTTTAGTCTGCCTATCGGCTTTGACCTTGGAGACTTCTTTACCTTTAGTTTGTC
* * * * * *
129119 TGTCGACTTTGACCTTAGAGACTTCTTTACCTTTAGTCTGCCTATCGGCTTTGACCTTGGAG
65 -GTCGGCTTTGACCTTGGAGACTTTTTTACCTTTAGTCTGCCTATCGACTTTGACCCTAGAG
* *
129181 ACTTCTTTACCTTTAGTCTGCCTATCGGCTTTGACCTTGGAGACTTCTTTACCTTTAGTCTGGCT
1 ACTTCTTTACCTTTAGTCTGCCTATCGGCTTTGACCTTGGAGACTTCTTTACCTTTAGTTTGTC-
* * * **
129246 ATCGGTTTTGACCTTGGAGACTTTTTTACCTTTAGTCTGCTTGCCGACTTTGACCCTAGAG
65 GTCGGCTTTGACCTTGGAGACTTTTTTACCTTTAGTCTGCCTATCGACTTTGACCCTAGAG
* **
129307 ACTTCTTTACCTTTAGTCTGCTTATCGGCTTTGA-CTCTAAAGACTTCTTTACCTTTA----GT-
1 ACTTCTTTACCTTTAGTCTGCCTATCGGCTTTGACCT-TGGAGACTTCTTTACCTTTAGTTTGTC
* * * * * *
129366 -T-GG---T---C-TGGAGACTTCTTTATCTTTTGTTTGCTTATCAACTTTGACCCTAGAG
65 GTCGGCTTTGACCTTGGAGACTTTTTTACCTTTAGTCTGCCTATCGACTTTGACCCTAGAG
* ** * * * **
129418 ACTTCTTTACCTTTAGTTTGTTTGTCGGCTTTGACCCTAGAGACTTCTTTGTCTTTAGCCTATT-
1 ACTTCTTTACCTTTAGTCTGCCTATCGGCTTTGACCTTGGAGACTTCTTTACCTTTAG--T-TTG
* * * * * * *
129482 T-GTCAGCTTTGACCTTGGAGACCTTTTTACCTTTAGTTTGCATGTTGGCTTTGACCCTAGAG
63 TCGTCGGCTTTGACCTTGGAGACTTTTTTACCTTTAGTCTGCCTATCGACTTTGACCCTAGAG
* * * ** * ** * *
129544 ACTTCTTTATCTTTAGTCTGCTTGTTAGCTTTGACCCTAAAGACTTCTTTACCTTTAGTCTGCTT
1 ACTTCTTTACCTTTAGTCTGCCTATCGGCTTTGACCTTGGAGACTTCTTTACCTTTAGTTTG-TC
*
129609 GTCGACTTTGACCT
65 GTCGGCTTTGACCT
129623 GAGATACTTT
Statistics
Matches: 650, Mismatches: 113, Indels: 91
0.76 0.13 0.11
Matches are distributed among these distances:
111 88 0.14
112 2 0.00
114 11 0.02
115 37 0.06
116 38 0.06
117 2 0.00
118 6 0.01
119 4 0.01
121 2 0.00
122 2 0.00
123 3 0.00
124 9 0.01
125 110 0.17
126 285 0.44
127 36 0.06
128 15 0.02
ACGTcount: A:0.16, C:0.23, G:0.17, T:0.43
Consensus pattern (125 bp):
ACTTCTTTACCTTTAGTCTGCCTATCGGCTTTGACCTTGGAGACTTCTTTACCTTTAGTTTGTCG
TCGGCTTTGACCTTGGAGACTTTTTTACCTTTAGTCTGCCTATCGACTTTGACCCTAGAG
Found at i:128891 original size:41 final size:42
Alignment explanation
Indices: 128841--128930 Score: 137
Period size: 41 Copynumber: 2.2 Consensus size: 42
128831 CTGCCTATTG
* * *
128841 GCTTTGACCTTGGAGACTTCTTTACCTTTA-TCTACTTGTCA
1 GCTTTGACCTTGGAGACTTCCTTACCTCTAGTCTACCTGTCA
*
128882 GCTTTGACCTTGGAGATTTCCTTACCTCTAGTCTACCTGTCA
1 GCTTTGACCTTGGAGACTTCCTTACCTCTAGTCTACCTGTCA
128924 GCTTTGA
1 GCTTTGA
128931 TCCTAGAAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
41 27 0.61
42 17 0.39
ACGTcount: A:0.17, C:0.26, G:0.17, T:0.41
Consensus pattern (42 bp):
GCTTTGACCTTGGAGACTTCCTTACCTCTAGTCTACCTGTCA
Found at i:129420 original size:69 final size:69
Alignment explanation
Indices: 129304--129435 Score: 201
Period size: 69 Copynumber: 1.9 Consensus size: 69
129294 TTTGACCCTA
** *
129304 GAGACTTCTTTACCTTTAGTCTGCTTATCGGCTTTGACTCTAAAGACTTCTTTACCTTTAGTTGG
1 GAGACTTCTTTACCTTTAGTCTGCTTATCAACTTTGACCCTAAAGACTTCTTTACCTTTAGTTGG
129369 TCTG
66 TCTG
* * * *
129373 GAGACTTCTTTATCTTTTGTTTGCTTATCAACTTTGACCCTAGAGACTTCTTTACCTTTAGTT
1 GAGACTTCTTTACCTTTAGTCTGCTTATCAACTTTGACCCTAAAGACTTCTTTACCTTTAGTT
129436 TGTTTGTCGG
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
69 56 1.00
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.45
Consensus pattern (69 bp):
GAGACTTCTTTACCTTTAGTCTGCTTATCAACTTTGACCCTAAAGACTTCTTTACCTTTAGTTGG
TCTG
Found at i:129426 original size:237 final size:237
Alignment explanation
Indices: 129136--129602 Score: 628
Period size: 237 Copynumber: 2.0 Consensus size: 237
129126 TTTGACCTTA
** * *
129136 GAGACTTCTTTACCTTTAGTCTGCCTATCGGCTTTGACCTTGGAGACTTCTTTACCTTTAGTCTG
1 GAGACTTCTTTACCTTTAGTCTGCCTATCAACTTTGACCCTAGAGACTTCTTTACCTTTAGTCTG
* * * * * *
129201 CCTATCGGCTTTGACCTTGGAGACTTCTTTACCTTTAGTCTGGCTATCGGTTTTGACCTTGGAGA
66 CCTATCGGCTTTGACCCTAGAGACTTCTTTACCTTTAGCCTAGCTATCAGCTTTGACCTTGGAGA
* *
129266 CTTTTTTACCTTTAGTCTGCTTGCCGACTTTGACCCTAGAGACTTCTTTACCTTTAGTCTGCTTA
131 CCTTTTTACCTTTAGTCTGCATGCCGACTTTGACCCTAGAGACTTCTTTACCTTTAGTCTGCTTA
* *
129331 TCGGCTTTGACTCTAAAGACTTCTTTACCTTTAGTTGGTCTG
196 TCAGCTTTGACCCTAAAGACTTCTTTACCTTTAGTTGGTCTG
* * * * *
129373 GAGACTTCTTTATCTTTTGTTTGCTTATCAACTTTGACCCTAGAGACTTCTTTACCTTTAGTTTG
1 GAGACTTCTTTACCTTTAGTCTGCCTATCAACTTTGACCCTAGAGACTTCTTTACCTTTAGTCTG
** * ** ** *
129438 TTTGTCGGCTTTGACCCTAGAGACTTCTTTGTCTTTAGCCTATTTGTCAGCTTTGACCTTGGAGA
66 CCTATCGGCTTTGACCCTAGAGACTTCTTTACCTTTAGCCTAGCTATCAGCTTTGACCTTGGAGA
* ** * * *
129503 CCTTTTTACCTTTAGTTTGCATGTTGGCTTTGACCCTAGAGACTTCTTTATCTTTAGTCTGCTTG
131 CCTTTTTACCTTTAGTCTGCATGCCGACTTTGACCCTAGAGACTTCTTTACCTTTAGTCTGCTTA
*
129568 TTAGCTTTGACCCTAAAGACTTCTTTACCTTTAGT
196 TCAGCTTTGACCCTAAAGACTTCTTTACCTTTAGT
129603 CTGCTTGTCG
Statistics
Matches: 196, Mismatches: 34, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
237 196 1.00
ACGTcount: A:0.16, C:0.23, G:0.18, T:0.43
Consensus pattern (237 bp):
GAGACTTCTTTACCTTTAGTCTGCCTATCAACTTTGACCCTAGAGACTTCTTTACCTTTAGTCTG
CCTATCGGCTTTGACCCTAGAGACTTCTTTACCTTTAGCCTAGCTATCAGCTTTGACCTTGGAGA
CCTTTTTACCTTTAGTCTGCATGCCGACTTTGACCCTAGAGACTTCTTTACCTTTAGTCTGCTTA
TCAGCTTTGACCCTAAAGACTTCTTTACCTTTAGTTGGTCTG
Found at i:129437 original size:42 final size:42
Alignment explanation
Indices: 129373--129647 Score: 268
Period size: 42 Copynumber: 6.5 Consensus size: 42
129363 AGTTGGTCTG
* * * * *
129373 GAGACTTCTTTATCTTTTGTTTGCTTATCAACTTTGACCCTA
1 GAGACTTCTTTACCTTTAGTCTGCTTGTCAGCTTTGACCCTA
* * *
129415 GAGACTTCTTTACCTTTAGTTTGTTTGTCGGCTTTGACCCTA
1 GAGACTTCTTTACCTTTAGTCTGCTTGTCAGCTTTGACCCTA
** * ** * *
129457 GAGACTTCTTTGTCTTTAGCCTATTTGTCAGCTTTGACCTTG
1 GAGACTTCTTTACCTTTAGTCTGCTTGTCAGCTTTGACCCTA
* * **
129499 GAGACCTT-TTTACCTTTAGTTTGCATGTTGGCTTTGACCCTA
1 GAGA-CTTCTTTACCTTTAGTCTGCTTGTCAGCTTTGACCCTA
* *
129541 GAGACTTCTTTATCTTTAGTCTGCTTGTTAGCTTTGACCCTA
1 GAGACTTCTTTACCTTTAGTCTGCTTGTCAGCTTTGACCCTA
*
129583 AAGACTTCTTTACCTTTAGTCTGCTTGTC-GACTTTGA-CCTGA
1 GAGACTTCTTTACCTTTAGTCTGCTTGTCAG-CTTTGACCCT-A
* * *
129625 GATACTTTCTTTATCTTTTGTCT
1 GAGAC-TTCTTTACCTTTAGTCT
129648 ACCCGTTAAC
Statistics
Matches: 192, Mismatches: 36, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
41 7 0.04
42 167 0.87
43 18 0.09
ACGTcount: A:0.16, C:0.21, G:0.16, T:0.46
Consensus pattern (42 bp):
GAGACTTCTTTACCTTTAGTCTGCTTGTCAGCTTTGACCCTA
Found at i:129475 original size:111 final size:111
Alignment explanation
Indices: 129260--129467 Score: 308
Period size: 111 Copynumber: 1.9 Consensus size: 111
129250 GTTTTGACCT
* * *
129260 TGGAGACTTTTTTACCTTTAGTCTGCTTGCCGACTTTGACCCTAGAGACTTCTTTACCTTTAGTC
1 TGGAGACTTCTTTACCTTTAGTCTGCTTACCAACTTTGACCCTAGAGACTTCTTTACCTTTAGTC
*
129325 TGCTTATCGGCTTTGACTCTAAAGACTTCTTTACCTTTAGTTGGTC
66 TGCTTATCGGCTTTGACCCTAAAGACTTCTTTACCTTTAGTTGGTC
* * * * *
129371 TGGAGACTTCTTTATCTTTTGTTTGCTTATCAACTTTGACCCTAGAGACTTCTTTACCTTTAGTT
1 TGGAGACTTCTTTACCTTTAGTCTGCTTACCAACTTTGACCCTAGAGACTTCTTTACCTTTAGTC
* * *
129436 TGTTTGTCGGCTTTGACCCTAGAGACTTCTTT
66 TGCTTATCGGCTTTGACCCTAAAGACTTCTTT
129468 GTCTTTAGCC
Statistics
Matches: 85, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
111 85 1.00
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (111 bp):
TGGAGACTTCTTTACCTTTAGTCTGCTTACCAACTTTGACCCTAGAGACTTCTTTACCTTTAGTC
TGCTTATCGGCTTTGACCCTAAAGACTTCTTTACCTTTAGTTGGTC
Found at i:129513 original size:195 final size:195
Alignment explanation
Indices: 129176--129560 Score: 459
Period size: 195 Copynumber: 2.0 Consensus size: 195
129166 GCTTTGACCT
** * *
129176 TGGAGACTTCTTTACCTTTAGTCTGCCTATCGGCTTTGACCTTGGAGACTTCTTTACCTTTAGTC
1 TGGAGACTTCTTTACCTTTAGTCTGCCTATCAACTTTGACCCTAGAGACTTCTTTACCTTTAGTC
* * * * * * *
129241 TGGCTATCGGTTTTGACCTTGGAGACTTTTTTACCTTTAGTCTGCTTGCCGACTTTGACCCTAGA
66 TGGCTATCGGCTTTGACCCTAGAGACTTCTTTACCTTTAGCCTACTTGCAGACTTTGACCCTAGA
* *
129306 GACTTCTTTACCTTTAGTCTGCTTATCGGCTTTGACTCTAAAGACTTCTTTACCTTTAGTTGGTC
131 GACTTCTTTACCTTTAGTCTGCATATCGGCTTTGACCCTAAAGACTTCTTTACCTTTAGTTGGTC
* * * * *
129371 TGGAGACTTCTTTATCTTTTGTTTGCTTATCAACTTTGACCCTAGAGACTTCTTTACCTTTAGTT
1 TGGAGACTTCTTTACCTTTAGTCTGCCTATCAACTTTGACCCTAGAGACTTCTTTACCTTTAGTC
** * ** * * *
129436 TGTTTGTCGGCTTTGACCCTAGAGACTTCTTTGTCTTTAGCCTATTTGTCAG-CTTTGACCTTGG
66 TGGCTATCGGCTTTGACCCTAGAGACTTCTTTACCTTTAGCCTACTTG-CAGACTTTGACCCTAG
* * * * *
129500 AGACCTT-TTTACCTTTAGTTTGCATGTTGGCTTTGACCCTAGAGACTTCTTTATCTTTAGT
130 AGA-CTTCTTTACCTTTAGTCTGCATATCGGCTTTGACCCTAAAGACTTCTTTACCTTTAGT
129561 CTGCTTGTTA
Statistics
Matches: 157, Mismatches: 31, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
195 152 0.97
196 5 0.03
ACGTcount: A:0.16, C:0.22, G:0.18, T:0.44
Consensus pattern (195 bp):
TGGAGACTTCTTTACCTTTAGTCTGCCTATCAACTTTGACCCTAGAGACTTCTTTACCTTTAGTC
TGGCTATCGGCTTTGACCCTAGAGACTTCTTTACCTTTAGCCTACTTGCAGACTTTGACCCTAGA
GACTTCTTTACCTTTAGTCTGCATATCGGCTTTGACCCTAAAGACTTCTTTACCTTTAGTTGGTC
Found at i:129514 original size:84 final size:84
Alignment explanation
Indices: 129373--129642 Score: 319
Period size: 84 Copynumber: 3.2 Consensus size: 84
129363 AGTTGGTCTG
* ** * * *
129373 GAGACTTCTTTATCTTTTGTTTGCTTATCAACTTTGACCCTAGAGACTTCTTTACCTTTAGTTTG
1 GAGACTTCTTTATCTTTAGCCTACTTGTCAGCTTTGACCCTAGAGACTTCTTTACCTTTAGTTTG
*
129438 TTTGTCGGCTTTGACCCTA
66 CTTGTCGGCTTTGACCCTA
* * * *
129457 GAGACTTCTTTGTCTTTAGCCTATTTGTCAGCTTTGACCTTGGAGACCTT-TTTACCTTTAGTTT
1 GAGACTTCTTTATCTTTAGCCTACTTGTCAGCTTTGACCCTAGAGA-CTTCTTTACCTTTAGTTT
* *
129521 GCATGTTGGCTTTGACCCTA
65 GCTTGTCGGCTTTGACCCTA
* * * * *
129541 GAGACTTCTTTATCTTTAGTCTGCTTGTTAGCTTTGACCCTAAAGACTTCTTTACCTTTAGTCTG
1 GAGACTTCTTTATCTTTAGCCTACTTGTCAGCTTTGACCCTAGAGACTTCTTTACCTTTAGTTTG
*
129606 CTTGTCGACTTTGA-CCTGA
66 CTTGTCGGCTTTGACCCT-A
*
129625 GATACTTTCTTTATCTTT
1 GAGAC-TTCTTTATCTTT
129643 TGTCTACCCG
Statistics
Matches: 156, Mismatches: 26, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
83 6 0.04
84 135 0.87
85 15 0.10
ACGTcount: A:0.17, C:0.21, G:0.16, T:0.46
Consensus pattern (84 bp):
GAGACTTCTTTATCTTTAGCCTACTTGTCAGCTTTGACCCTAGAGACTTCTTTACCTTTAGTTTG
CTTGTCGGCTTTGACCCTA
Found at i:129739 original size:42 final size:42
Alignment explanation
Indices: 129374--129739 Score: 134
Period size: 42 Copynumber: 8.6 Consensus size: 42
129364 GTTGGTCTGG
* * * * *
129374 AGACTTCTTTATCTTTTGTTTGCTTATCAACTTTGACCCT-AG
1 AGACTTCTTTACCTTTTGTCTGCCTGTCAACTTTGA-CCTGAA
* * ** ** *
129416 AGACTTCTTTACCTTTAGTTTGTTTGTCGGCTTTGACCCT-AG
1 AGACTTCTTTACCTTTTGTCTGCCTGTCAACTTTGA-CCTGAA
** * * *** * *
129458 AGACTTCTTTGTCTTTAGCCTATTTGTCAGCTTTGACCTTG-G
1 AGACTTCTTTACCTTTTGTCTGCCTGTCAACTTTGACC-TGAA
* * * *** *
129500 AGACCTT-TTTACCTTTAGTTTGCATGTTGGCTTTGACCCT-AG
1 AGA-CTTCTTTACCTTTTGTCTGCCTGTCAACTTTGA-CCTGAA
* * * * *
129542 AGACTTCTTTATCTTTAGTCTGCTTGTTAGCTTTGACCCT-AA
1 AGACTTCTTTACCTTTTGTCTGCCTGTCAACTTTGA-CCTGAA
* * * *
129584 AGACTTCTTTACCTTTAGTCTGCTTGTCGACTTTGACCTGAG
1 AGACTTCTTTACCTTTTGTCTGCCTGTCAACTTTGACCTGAA
* * * * * * * *
129626 ATACTTTCTTTATCTTTTGTCTACCCGTTAACCTAGA-CTCGAG
1 AGAC-TTCTTTACCTTTTGTCTGCCTGTCAACTTTGACCT-GAA
* * *
129669 AGACTTTTCTTTATTACCATTTGCCTGCCAGTCAACTTTGACCTGAA
1 AGAC--TTC--T-TTACCTTTTGTCTGCCTGTCAACTTTGACCTGAA
129716 AGACTTCTTTACCTTTTGTCTGCC
1 AGACTTCTTTACCTTTTGTCTGCC
129740 CATCGGCTTT
Statistics
Matches: 257, Mismatches: 53, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
41 8 0.03
42 178 0.69
43 35 0.14
44 4 0.02
45 3 0.01
46 1 0.00
47 26 0.10
48 2 0.01
ACGTcount: A:0.18, C:0.23, G:0.16, T:0.43
Consensus pattern (42 bp):
AGACTTCTTTACCTTTTGTCTGCCTGTCAACTTTGACCTGAA
Found at i:130327 original size:7 final size:7
Alignment explanation
Indices: 130315--130356 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
130305 GGTTTATTAC
130315 AAAAATA
1 AAAAATA
130322 AAAAAT-
1 AAAAATA
*
130328 AATAATA
1 AAAAATA
*
130335 ATTAAATA
1 A-AAAATA
130343 AAAAATA
1 AAAAATA
130350 AAAAATA
1 AAAAATA
130357 TTAATTAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
6 5 0.17
7 19 0.66
8 5 0.17
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (7 bp):
AAAAATA
Found at i:130338 original size:25 final size:25
Alignment explanation
Indices: 130323--130372 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
130313 ACAAAAATAA
*
130323 AAAATAATAATAATTAAATAAAAAAT
1 AAAA-AATAATAATTAATTAAAAAAT
*
130349 AAAAAATATTAATTAATTAAAAAA
1 AAAAAATAATAATTAATTAAAAAA
130373 GAGAAAAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (25 bp):
AAAAAATAATAATTAATTAAAAAAT
Found at i:130347 original size:28 final size:29
Alignment explanation
Indices: 130315--130369 Score: 94
Period size: 28 Copynumber: 1.9 Consensus size: 29
130305 GGTTTATTAC
130315 AAAAATAAAAAATAATAA-TAATTAAATA
1 AAAAATAAAAAATAATAATTAATTAAATA
*
130343 AAAAATAAAAAATATTAATTAATTAAA
1 AAAAATAAAAAATAATAATTAATTAAA
130370 AAAGAGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 17 0.68
29 8 0.32
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (29 bp):
AAAAATAAAAAATAATAATTAATTAAATA
Found at i:130379 original size:25 final size:25
Alignment explanation
Indices: 130323--130379 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
130313 ACAAAAATAA
*
130323 AAAATAATAATAATTAAATAAAAAAT
1 AAAA-AATAATAATTAAATAAAAAAG
* *
130349 AAAAAATATTAATTAATTAAAAAAG
1 AAAAAATAATAATTAAATAAAAAAG
*
130374 AGAAAA
1 AAAAAA
130380 GTTGAATTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 23 0.85
26 4 0.15
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.25
Consensus pattern (25 bp):
AAAAAATAATAATTAAATAAAAAAG
Found at i:130932 original size:15 final size:15
Alignment explanation
Indices: 130914--130943 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
130904 AAGGGAGAAT
130914 ATAAAAAAAAACAAA
1 ATAAAAAAAAACAAA
*
130929 ATAAAAAACAACAAA
1 ATAAAAAAAAACAAA
130944 GAAAAAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.10, G:0.00, T:0.07
Consensus pattern (15 bp):
ATAAAAAAAAACAAA
Found at i:134824 original size:21 final size:19
Alignment explanation
Indices: 134772--134841 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 19
134762 ATAGTTGGCT
*
134772 AATGTATCTATACATTTTCA
1 AATGTATCGATACA-TTTCA
*
134792 AATATA-CAGATACATTTACTA
1 AATGTATC-GATACATTT-C-A
134813 AATGTATCGATACAATTTCCA
1 AATGTATCGATAC-ATTT-CA
134834 AATGTATC
1 AATGTATC
134842 AACACATTCA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
19 4 0.10
20 11 0.27
21 20 0.49
22 6 0.15
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.37
Consensus pattern (19 bp):
AATGTATCGATACATTTCA
Found at i:135059 original size:16 final size:16
Alignment explanation
Indices: 135024--135062 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
135014 TAAAGAAAGT
* *
135024 GAAAAAAGAAAAGAAC
1 GAAAAAAGAAAAAAAA
*
135040 GAAAATAGAAAAAAAA
1 GAAAAAAGAAAAAAAA
135056 GAAAAAA
1 GAAAAAA
135063 TTAGTCAAGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.79, C:0.03, G:0.15, T:0.03
Consensus pattern (16 bp):
GAAAAAAGAAAAAAAA
Found at i:139934 original size:156 final size:156
Alignment explanation
Indices: 139712--140015 Score: 407
Period size: 156 Copynumber: 1.9 Consensus size: 156
139702 AGCGAACCCG
* ** * * *
139712 GTGACAACTTAGGACTCGATTTCATAAAAATTATGAAAATGCCCCTATGGTTATACAATCGACAT
1 GTGACAACTAAGGACTCGATTTCATAAAAATTACAAAAATACCCCTATGGGTATACAATCAACAT
* * * *
139777 GAAAATATCTTGGTAACGCTAAAAGACTTAAAAACGTTA-AAGCTGGGGTGAACCTATCTTAAAT
66 GAAAATATCTCGATAACCCTAAAAGACTTAAAAACGTTATAA-CTGGGGTGAACCTATCCTAAAT
139841 ACCCAACTTCGGCATAAAAGTGGATCTA
130 ACCCAACTT-GGCATAAAAGTGGATCTA
* **
139869 GTGACAACCTAAGG-CTCGATTTTA-AAAAATTACAAAAATACCCCTATGGGTATACCTTCAACA
1 GTGACAA-CTAAGGACTCGATTTCATAAAAATTACAAAAATACCCCTATGGGTATACAATCAACA
* * *
139932 TGAAAGTATCTCGATAACCCTAAAAGATTTAAAAAGGTTATAACTGGGGTGAACCTATCCTAAAT
65 TGAAAATATCTCGATAACCCTAAAAGACTTAAAAACGTTATAACTGGGGTGAACCTATCCTAAAT
*
139997 ACCCACCTTGGCATAAAAG
130 ACCCAACTTGGCATAAAAG
140016 CGGACTTGGT
Statistics
Matches: 128, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
155 10 0.08
156 95 0.74
157 18 0.14
158 5 0.04
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (156 bp):
GTGACAACTAAGGACTCGATTTCATAAAAATTACAAAAATACCCCTATGGGTATACAATCAACAT
GAAAATATCTCGATAACCCTAAAAGACTTAAAAACGTTATAACTGGGGTGAACCTATCCTAAATA
CCCAACTTGGCATAAAAGTGGATCTA
Found at i:140054 original size:156 final size:155
Alignment explanation
Indices: 139737--140067 Score: 382
Period size: 156 Copynumber: 2.1 Consensus size: 155
139727 TCGATTTCAT
* * * * * * *
139737 AAAAATTATGAAAATGCCCCTATGGTTATACAATCGACATGAAAATATCTTGGTAACGCTAAAAG
1 AAAAATTA-AAAAATACCCCTATGGGTATACAATCAACATGAAAATATCTCGATAACCCTAAAAG
* *
139802 ACTTAAAAACGTTAAAGCTGGGGTGAACCTATCTTAAATACCCAACTTCGGCATAAAAGTGGATC
65 ACTTAAAAACGTTAAAGCTGGGGTGAACCTATCCTAAATACCCAACTTCGGCATAAAAGCGGATC
* *
139867 TAGTGACAACCTAAGGCTCGATTTTA
130 TAGTGACAACCTAAGGCTCAATTCTA
** *
139893 AAAAATTACAAAAATACCCCTATGGGTATACCTTCAACATGAAAGTATCTCGATAACCCTAAAAG
1 AAAAATTA-AAAAATACCCCTATGGGTATACAATCAACATGAAAATATCTCGATAACCCTAAAAG
* * *
139958 ATTTAAAAAGGTTATAA-CTGGGGTGAACCTATCCTAAATACCCACCTT-GGCATAAAAGCGGA-
65 ACTTAAAAACGTTA-AAGCTGGGGTGAACCTATCCTAAATACCCAACTTCGGCATAAAAGCGGAT
* * *
140020 CTTGGTGATAGCCT-AGGACTCAATTCTA
129 C-TAGTGACAACCTAAGG-CTCAATTCTA
*
140048 GGAAAATTAAGAAAATACCC
1 -AAAAATTAA-AAAATACCC
140068 TGAAGGGATA
Statistics
Matches: 148, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
154 4 0.03
155 31 0.21
156 111 0.75
157 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (155 bp):
AAAAATTAAAAAATACCCCTATGGGTATACAATCAACATGAAAATATCTCGATAACCCTAAAAGA
CTTAAAAACGTTAAAGCTGGGGTGAACCTATCCTAAATACCCAACTTCGGCATAAAAGCGGATCT
AGTGACAACCTAAGGCTCAATTCTA
Found at i:140274 original size:153 final size:154
Alignment explanation
Indices: 139985--140274 Score: 327
Period size: 153 Copynumber: 1.9 Consensus size: 154
139975 CTGGGGTGAA
* ** * *
139985 CCTATCCTAAATACCCACCTTGGCATAAAAGCGGACTTGGTGATAGCCTAGGACTCAATTCTAGG
1 CCTATCCTAAATACCCACCTTGGCATAAAAGCAGACCCGGTGACAACCTAGGACTCAATTCTAGG
* **
140050 AAAATTAAGAAAATACCCTGAAGGGATACCTTCGACATAGAAGTGCTTGACACCCCCAAAGGACT
66 AAAATTAAGAAAATACCCTGAAGGGATACCTTCGACATAGAAGTACCCGACACCCCCAAAGGACT
*
140115 TAAAAATATTATAAAAGGGATGAG
131 AAAAAATATTATAAAAGGGATGAG
* * * * * *
140139 CCTATCTTAAATACCCACCTTCGGTATAAAAGTAGACCCGGTGACAACCTATGACTCGATT-T-T
1 CCTATCCTAAATACCCACCTT-GGCATAAAAGCAGACCCGGTGACAACCTAGGACTCAATTCTAG
* * ** * * *
140202 GAAAATTATGAAAATACCCTTG-GGGGATA-CTTTTACGTAGAAGTACCCGACACCCCTAAAGGG
65 GAAAATTAAGAAAATACCC-TGAAGGGATACCTTCGACATAGAAGTACCCGACACCCCCAAAGGA
140265 CTCAAAAAAT
129 CT-AAAAAAT
140275 GAAAGAAATA
Statistics
Matches: 111, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
152 28 0.25
153 30 0.27
154 23 0.21
155 30 0.27
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.23
Consensus pattern (154 bp):
CCTATCCTAAATACCCACCTTGGCATAAAAGCAGACCCGGTGACAACCTAGGACTCAATTCTAGG
AAAATTAAGAAAATACCCTGAAGGGATACCTTCGACATAGAAGTACCCGACACCCCCAAAGGACT
AAAAAATATTATAAAAGGGATGAG
Found at i:141716 original size:6 final size:7
Alignment explanation
Indices: 141699--141728 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
141689 TTTATGACTT
141699 TTTTTAC
1 TTTTTAC
141706 TTTTTAC
1 TTTTTAC
141713 TTTTTAC
1 TTTTTAC
141720 TTTTT-C
1 TTTTTAC
141726 TTT
1 TTT
141729 AATTCTGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.17
7 19 0.83
ACGTcount: A:0.10, C:0.13, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTAC
Found at i:142635 original size:33 final size:32
Alignment explanation
Indices: 142571--142635 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
142561 TTAACTCAAT
**
142571 ATGTATCGATACCAAGAACATGTATTGATACA
1 ATGTATCGATACCAAGAACATGTATCAATACA
* *
142603 ATGTATCGATACTAAGCAATATGTATCAATACA
1 ATGTATCGATACCAAG-AACATGTATCAATACA
142636 TCTGGGTGTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 15 0.54
33 13 0.46
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (32 bp):
ATGTATCGATACCAAGAACATGTATCAATACA
Found at i:143336 original size:18 final size:19
Alignment explanation
Indices: 143296--143341 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
143286 ATATAGTAAT
143296 CCCC-CTTAACAAATTATC
1 CCCCTCTTAACAAATTATC
* *
143314 CCCCT-TTAACAATTTTTC
1 CCCCTCTTAACAAATTATC
*
143332 TCCCTCTTAA
1 CCCCTCTTAA
143342 AACATTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.26, C:0.37, G:0.00, T:0.37
Consensus pattern (19 bp):
CCCCTCTTAACAAATTATC
Found at i:145350 original size:18 final size:18
Alignment explanation
Indices: 145327--145361 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
145317 TAGGTTTTCT
*
145327 AAATGTATCGATACATTG
1 AAATGTATCAATACATTG
145345 AAATGTATCAATACATT
1 AAATGTATCAATACATT
145362 TTGGGAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (18 bp):
AAATGTATCAATACATTG
Found at i:151506 original size:19 final size:20
Alignment explanation
Indices: 151484--151527 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
151474 AATATGTGTT
151484 GATACCAAG-AACATGTATC
1 GATACCAAGCAACATGTATC
* *
151503 GATACTAAGCAATATGTATC
1 GATACCAAGCAACATGTATC
*
151523 AATAC
1 GATAC
151528 ATCTAGGTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.25
Consensus pattern (20 bp):
GATACCAAGCAACATGTATC
Found at i:151521 original size:20 final size:20
Alignment explanation
Indices: 151473--151527 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
151463 CGATTTAACT
* *
151473 CAATATGTGTTGATACCAAG
1 CAATATGTATCGATACCAAG
* *
151493 -AACATGTATCGATACTAAG
1 CAATATGTATCGATACCAAG
*
151512 CAATATGTATCAATAC
1 CAATATGTATCGATAC
151528 ATCTAGGTGT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (20 bp):
CAATATGTATCGATACCAAG
Found at i:152628 original size:166 final size:166
Alignment explanation
Indices: 152290--152664 Score: 420
Period size: 166 Copynumber: 2.3 Consensus size: 166
152280 TCAAAAAATT
* * *
152290 TTAATATGAATTAAATAATAATATTTGATAAATTTAAAAAATTATAAACTAAGAAAAATTCCCTC
1 TTAATATGAATTAAATAATAATATTTGATAAATTTTAAAAATTATAAACCAAGAAAAATGCCCTC
* * *
152355 GAAAATATTTATAGAGTAGAAAACTTCATATTTCGAAAACGAGAGAATTTCGAAGACAAAACTCA
66 GAAAATACTTACAGAGTAGAAAACTTCATATTTCGAAAACGAGAGAATTTCGAAGACAAAACTAA
* * *** *
152420 AAACTTATGAAAATAAATTAATATTTTATAACTGAT
131 AAACTTATGAAAATAAATGAATATTTTAAAAAAAAA
* *
152456 TTAATATGAATTGAATAATAATATTTGATGAATTTTAAAAATTA-AAACCCAAGAAAAATG-CCT
1 TTAATATGAATTAAATAATAATATTTGATAAATTTTAAAAATTATAAA-CCAAGAAAAATGCCCT
* * * * * * * *
152519 CCGAAAATACTTACGGAGTAGAAAATTTCATATTTTGAAAA-TAGGGAGTTT-TATGTA-AAAA-
65 -CGAAAATACTTACAGAGTAGAAAACTTCATATTTCGAAAACGAGAGAATTTCGAAG-ACAAAAC
* * * *
152580 TGAAAAATTTATGAAAATGAATGACTTTTTTGTAAAAAAAAA
128 T-AAAAACTTATGAAAATAAATGA-ATATTT-TAAAAAAAAA
152622 TTAATATGAATTAAATAATAATATTTGATAAATTTTAAAAATT
1 TTAATATGAATTAAATAATAATATTTGATAAATTTTAAAAATT
152665 TTGGATTCAC
Statistics
Matches: 175, Mismatches: 28, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
163 1 0.01
164 24 0.14
165 18 0.10
166 132 0.75
ACGTcount: A:0.49, C:0.07, G:0.10, T:0.34
Consensus pattern (166 bp):
TTAATATGAATTAAATAATAATATTTGATAAATTTTAAAAATTATAAACCAAGAAAAATGCCCTC
GAAAATACTTACAGAGTAGAAAACTTCATATTTCGAAAACGAGAGAATTTCGAAGACAAAACTAA
AAACTTATGAAAATAAATGAATATTTTAAAAAAAAA
Found at i:154291 original size:84 final size:85
Alignment explanation
Indices: 153879--154812 Score: 534
Period size: 85 Copynumber: 11.2 Consensus size: 85
153869 TAAGGGACAA
** * * * * * **
153879 AAGGTTGACCAGGGACTGAGCTAATAGGTCACCATAGCTGTAAGAGGCTTACTAGGGATTGAGCC
1 AAGGTTGACCAAAGACTGAGCTGACAGGTCACCATAGGTGTAAGGGGTTTACCGGGGATTGAGCC
*
153944 AACAGGTAAATAATGAGATG
66 AACAGGTAAATAAGGAGATG
* * * * * **
153964 AAGGTTGACTAGAGACTGAACTGACAAGTCACCATAAGG-GTAAAGGGTTTACTAGGGACTT-AG
1 AAGGTTGACCAAAGACTGAGCTGACAGGTCACCAT-AGGTGTAAGGGGTTTACCGGGGA-TTGAG
* *
154027 CCGACTGGTAAATAAGGAGATG
64 CCAACAGGTAAATAAGGAGATG
* * * * * *
154049 AAGGTTAACTAGAGACTGAGCTGATAGGTCACCATAAGG-GTAGGGGGTTTACCGAGGATTGAGC
1 AAGGTTGACCAAAGACTGAGCTGACAGGTCACCAT-AGGTGTAAGGGGTTTACCGGGGATTGAGC
* * *
154113 CAAAAGGTAAACAAAGAGATG
65 CAACAGGTAAATAAGGAGATG
* * * * * * * *
154134 AAGGTTAATCGAAGACTAAGCTGACAGGTCACCAT-GGAGGTCAGGGGTTTACCCGGGATTGAGT
1 AAGGTTGACCAAAGACTGAGCTGACAGGTCACCATAGG-TGTAAGGGGTTTACCGGGGATTGAGC
* * * *
154198 CGACAGGTAAACAAAGAGATA
65 CAACAGGTAAATAAGGAGATG
* * *
154219 AAGGTTGACCAAAAATTGAGCTGACA-GTCACTATAGGTGTAAGGGGTTTACCGGGGATTGAGCC
1 AAGGTTGACCAAAGACTGAGCTGACAGGTCACCATAGGTGTAAGGGGTTTACCGGGGATTGAGCC
* *
154283 AATAGGTAAAGAAGGAGATG
66 AACAGGTAAATAAGGAGATG
* * * * * * * * *
154303 AAGGTTGACCAGAGACTAAGCTGA-AGGTCACTATAGGGGTAAGTGATTTACTGGAGACTGAGCC
1 AAGGTTGACCAAAGACTGAGCTGACAGGTCACCATAGGTGTAAGGGGTTTACCGGGGATTGAGCC
* *
154367 GACAAGTAAATAAGGAGATG
66 AACAGGTAAATAAGGAGATG
* ** * * *** * *
154387 AAGGTTGACCGAAA-ATTGAGCTGTTAGATCACTATAGGTGTAAGGGGTTTACCAAAGACTAAGC
1 AAGGTTGACC-AAAGACTGAGCTGACAGGTCACCATAGGTGTAAGGGGTTTACCGGGGATTGAGC
* * *
154451 CGACAGGTAAACAAGAAGATG
65 CAACAGGTAAATAAGGAGATG
* * * * * * * * ** *
154472 AAGGTTGACCAGAGACTAAGTTGATAGGTAAACAAAGAG-ATAA-ATGTTTGATC--GGA--GA-
1 AAGGTTGACCAAAGACTGAGCTGACAGGTCACCATAG-GTGTAAGGGGTTT-ACCGGGGATTGAG
*
154530 -CTA-AGGT--A-AA-GAGATG
64 CCAACAGGTAAATAAGGAGATG
* * * * * * * *
154546 AAGGTTGACTAGAGACTGAGTTGACAAGTCATCATAAGG-GTAAGGGCTTTATCGGGGATTGAGT
1 AAGGTTGACCAAAGACTGAGCTGACAGGTCACCAT-AGGTGTAAGGGGTTTACCGGGGATTGAGC
* * * *
154610 CGATAGGTAAACAAAGAGATGG
65 CAACAGGTAAATAAGGAGAT-G
* * * * *
154632 AA-GTTGATCAGAGACTGAGCTGACAGGTCACCATAAGG-ATAAGTGGTTTACCGAGGATTGAGC
1 AAGGTTGACCAAAGACTGAGCTGACAGGTCACCAT-AGGTGTAAGGGGTTTACCGGGGATTGAGC
* * *
154695 CGACAGGTAAACAAAGAGATG
65 CAACAGGTAAATAAGGAGATG
* **** * * * * * * *
154716 AAAGTTGATTGGAGACTAAGCTAATAGGTCACCATAGGGGTAAAGGG--T-CCGAGGACTGAGCC
1 AAGGTTGACCAAAGACTGAGCTGACAGGTCACCATAGGTGTAAGGGGTTTACCGGGGATTGAGCC
* * * *
154778 GACAAGTAAACAAAGAGATG
66 AACAGGTAAATAAGGAGATG
*
154798 AAGGTTGACCGAAGA
1 AAGGTTGACCAAAGA
154813 TTGAACTTAA
Statistics
Matches: 679, Mismatches: 142, Indels: 59
0.77 0.16 0.07
Matches are distributed among these distances:
74 40 0.06
75 7 0.01
76 4 0.01
78 6 0.01
79 2 0.00
80 2 0.00
81 5 0.01
82 43 0.06
83 7 0.01
84 146 0.22
85 409 0.60
86 8 0.01
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.20
Consensus pattern (85 bp):
AAGGTTGACCAAAGACTGAGCTGACAGGTCACCATAGGTGTAAGGGGTTTACCGGGGATTGAGCC
AACAGGTAAATAAGGAGATG
Found at i:154461 original size:169 final size:167
Alignment explanation
Indices: 153855--154807 Score: 629
Period size: 170 Copynumber: 5.7 Consensus size: 167
153845 CCCGAAACTA
* ** *** * * * *
153855 AGCCGACAAGTAAATAAGG-GACAAAAGGTTGACCAGGGACTGAGCTAATAGGTCACCATAGCTG
1 AGCCGACAGGTAAATAAGGAGA-TGAAGGTTGACCAAAAATTGAGCTGATA-GTCACTATAGGTG
* * * * * *
153919 TAAGAGGCTTA-CTAGGGATTGAGCCAACAGGTAAATAATGAGATGAAGGTTGACTAGAGACTGA
64 TAAGGGGTTTACCGA-GGATTGAGCCAACAGGTAAACAAGGAGATGAAGGTTGACCAGAGACT-A
* * *
153983 A-CTGACAAGTCACCATAAGGGTAAAGGGTTTACTAGGGACTT
127 AGCTGACAGGTCACCATAGGGGT-AAGGGTTTACT-GGGACTG
* * * * * * *
154025 AGCCGACTGGTAAATAAGGAGATGAAGGTTAACTAGAGACTGAGCTGATAGGTCACCATAAGG-G
1 AGCCGACAGGTAAATAAGGAGATGAAGGTTGACCAAAAATTGAGCTGATA-GTCACTAT-AGGTG
* * * * *
154089 TAGGGGGTTTACCGAGGATTGAGCCAAAAGGTAAACAAAGAGATGAAGGTTAATC-GAAGACTAA
64 TAAGGGGTTTACCGAGGATTGAGCCAACAGGTAAACAAGGAGATGAAGGTTGACCAG-AGACTAA
* * *
154153 GCTGACAGGTCACCAT-GGAGGTCAGGGGTTTACCCGGGATTG
128 GCTGACAGGTCACCATAGG-GGT-AAGGGTTTA-CTGGGACTG
* * * * *
154195 AGTCGACAGGTAAACAAAGAGATAAAGGTTGACCAAAAATTGAGCTGACAGTCACTATAGGTGTA
1 AGCCGACAGGTAAATAAGGAGATGAAGGTTGACCAAAAATTGAGCTGATAGTCACTATAGGTGTA
* * *
154260 AGGGGTTTACCGGGGATTGAGCCAATAGGTAAAGAAGGAGATGAAGGTTGACCAGAGACTAAGCT
66 AGGGGTTTACCGAGGATTGAGCCAACAGGTAAACAAGGAGATGAAGGTTGACCAGAGACTAAGCT
* *
154325 GA-AGGTCACTATAGGGGTAAGTGATTTACTGGAGACTG
131 GACAGGTCACCATAGGGGTAAG-GGTTTACTGG-GACTG
* * *
154363 AGCCGACAAGTAAATAAGGAGATGAAGGTTGACCGAAAATTGAGCTGTTAGATCACTATAGGTGT
1 AGCCGACAGGTAAATAAGGAGATGAAGGTTGACCAAAAATTGAGCTGATAG-TCACTATAGGTGT
* * * * * * *
154428 AAGGGGTTTACCAAAGACTAAGCCGACAGGTAAACAAGAAGATGAAGGTTGACCAGAGACTAAGT
65 AAGGGGTTTACCGAGGATTGAGCCAACAGGTAAACAAGGAGATGAAGGTTGACCAGAGACTAAGC
* * * * * * ** *
154493 TGATAGGTAAACAAAGAGATAAATGTTTGA-TCGGA--G
130 TGACAGGTCACCATAGGGGTAAGGGTTT-ACTGGGACTG
* * * * * * *
154529 A--CTA-AGGT--A-AA-GAGATGAAGGTTGACTAGAGACTGAGTTGACAAGTCA-TCATAAGG-
1 AGCCGACAGGTAAATAAGGAGATGAAGGTTGACCAAAAATTGAGCTGA-TAGTCACT-AT-AGGT
* * * * * * * * *
154585 GTAAGGGCTTTATCGGGGATTGAGTCGATAGGTAAACAAAGAGATGGAA-GTTGATCAGAGACTG
63 GTAAGGGGTTTACCGAGGATTGAGCCAACAGGTAAACAAGGAGAT-GAAGGTTGACCAGAGACTA
* * * *
154649 AGCTGACAGGTCACCATAAGGATAAGTGGTTTACCGAGGATTG
127 AGCTGACAGGTCACCATAGGGGTAAG-GGTTTACTG-GGACTG
* * * **** * * * * * *
154692 AGCCGACAGGTAAACAAAGAGATGAAAGTTGATTGGAGACTAAGCTAATAGGTCACCATAGGGGT
1 AGCCGACAGGTAAATAAGGAGATGAAGGTTGACCAAAAATTGAGCTGATA-GTCACTATAGGTGT
* * * * *
154757 AAAGGG--T-CCGAGGACTGAGCCGACAAGTAAACAAAGAGATGAAGGTTGACC
65 AAGGGGTTTACCGAGGATTGAGCCAACAGGTAAACAAGGAGATGAAGGTTGACC
154808 GAAGATTGAA
Statistics
Matches: 618, Mismatches: 130, Indels: 73
0.75 0.16 0.09
Matches are distributed among these distances:
158 1 0.00
159 94 0.15
160 14 0.02
161 4 0.01
163 5 0.01
164 2 0.00
165 2 0.00
166 9 0.01
167 38 0.06
168 71 0.11
169 156 0.25
170 215 0.35
171 7 0.01
ACGTcount: A:0.36, C:0.14, G:0.30, T:0.20
Consensus pattern (167 bp):
AGCCGACAGGTAAATAAGGAGATGAAGGTTGACCAAAAATTGAGCTGATAGTCACTATAGGTGTA
AGGGGTTTACCGAGGATTGAGCCAACAGGTAAACAAGGAGATGAAGGTTGACCAGAGACTAAGCT
GACAGGTCACCATAGGGGTAAGGGTTTACTGGGACTG
Found at i:155129 original size:47 final size:48
Alignment explanation
Indices: 155045--155146 Score: 109
Period size: 47 Copynumber: 2.1 Consensus size: 48
155035 CAAGGGTGAG
* ** * * *
155045 AAGAGTTTGACCTAGGTCCCAACGCCAATGTAGTCAAATGAG-GATGGA
1 AAGAGTTCGACCTAGGTCCCAACGCCAATACAATCAAACGAGAG-TAGA
* *
155093 AAGAGTTCGACC-AGGTCCTAATGCCAATACAATCAAACGAGAGTAGA
1 AAGAGTTCGACCTAGGTCCCAACGCCAATACAATCAAACGAGAGTAGA
155140 AAGAGTT
1 AAGAGTT
155147 TAACTAGGTT
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
47 33 0.73
48 12 0.27
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.20
Consensus pattern (48 bp):
AAGAGTTCGACCTAGGTCCCAACGCCAATACAATCAAACGAGAGTAGA
Found at i:156091 original size:17 final size:16
Alignment explanation
Indices: 156041--156104 Score: 65
Period size: 17 Copynumber: 3.8 Consensus size: 16
156031 AAGTTAGGTA
*
156041 AAAAAGAAAGAAAGAAG
1 AAAAAGAAA-AAAAAAG
** *
156058 ATGAAGAAGAAAGAAAG
1 AAAAAGAA-AAAAAAAG
156075 AAAAAGGAAAAAAAAAG
1 AAAAA-GAAAAAAAAAG
156092 AAAAAGAAAAAAA
1 AAAAAGAAAAAAA
156105 TATGAAATGG
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
16 8 0.21
17 26 0.68
18 4 0.11
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (16 bp):
AAAAAGAAAAAAAAAG
Found at i:163924 original size:27 final size:27
Alignment explanation
Indices: 163888--164524 Score: 905
Period size: 27 Copynumber: 23.0 Consensus size: 27
163878 GTGGTATTTT
* *
163888 CTTTTAAAGTCCACAACTCTGTGGCATC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
* **
163916 TTTTTAAGTCCACAACTCTATGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
163943 CTTTTAAGTCCACAACTCCGTGGCACCGCACC
1 CTTTTAAGTCCACAACTCCGT-G----GCACC
* *
163975 CTTTTAAGTCCATAACTCCGTGGCATCT
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
* *
164003 CTTTTAATTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
164030 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
164058 CTTTTAAGACCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
**
164085 CTTTTAAGTCCACAACTCTATGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
164112 CTTTTAAGTCCATAACTCCGTGGCATCT
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
164140 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
164167 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
164195 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
164223 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
164250 CTTTTAAAGTCCACAACTCCGTGTCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
164278 CTTTTAAGACCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
164305 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
164332 CTTTTAAGTCCATAACTCCGTGGCATCT
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
* *
164360 CTTTTAAGTCCACAATTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
164387 TTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
164415 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
164443 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
164470 CTTTTAAGTCCACAACTCCGTGGCATC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* * *
164497 CTTTTAAATTCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
164524 C
1 C
164525 ATTTCAAAGC
Statistics
Matches: 552, Mismatches: 45, Indels: 25
0.89 0.07 0.04
Matches are distributed among these distances:
27 292 0.53
28 234 0.42
31 1 0.00
32 25 0.05
ACGTcount: A:0.24, C:0.34, G:0.14, T:0.29
Consensus pattern (27 bp):
CTTTTAAGTCCACAACTCCGTGGCACC
Found at i:164211 original size:165 final size:165
Alignment explanation
Indices: 163888--164539 Score: 927
Period size: 165 Copynumber: 3.9 Consensus size: 165
163878 GTGGTATTTT
* * * *
163888 CTTTTAAAGTCCACAACTCTGTGGCA-TCTTTTTAAGTCCACAACTCTATGGCACCCTTTTAAGT
1 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCATGGCACCCTTTTAAGT
* * *
163952 CCACAACTCCGTGGCACCGCACCCTTTTAAGTCCATAACTCCGTGGCATCTCTTTTAATTCCACA
66 CCACAACTCCGT-G----GCACCCTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACA
*
164017 ACTCTGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACC
125 ACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACC
* *
164058 CTTTT-AAGACCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCTATGGCACCCTTTTAAGT
1 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCATGGCACCCTTTTAAGT
* *
164121 CCATAACTCCGTGGCATCTCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTC
66 CCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTC
164186 CGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACC
129 CGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACC
* * *
164223 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGTCACCCTTTTAAGA
1 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCATGGCACCCTTTTAAGT
* *
164287 CCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCATAACTCCG
66 CCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCG
* * *
164352 TGGCATCTCTTTT-AAGTCCACAATTCTGTGGCACC
131 TGGCA-CCCTTTTAAAGTCCACAACTCCGTGGCACC
* *
164387 TTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGT
1 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCATGGCACCCTTTTAAGT
* * * *
164452 CCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAATTCACAACTCTG
66 CCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCG
* *
164517 TGGCACCCATTTCAAAGCCCACA
131 TGGCACCC-TTTTAAAGTCCACA
164540 CAAGTCGGTG
Statistics
Matches: 441, Mismatches: 33, Indels: 20
0.89 0.07 0.04
Matches are distributed among these distances:
164 54 0.12
165 266 0.60
166 50 0.11
168 1 0.00
169 60 0.14
170 10 0.02
ACGTcount: A:0.24, C:0.34, G:0.14, T:0.29
Consensus pattern (165 bp):
CTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCATGGCACCCTTTTAAGT
CCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCG
TGGCACCCTTTTAAAGTCCACAACTCCGTGGCACC
Found at i:164280 original size:220 final size:220
Alignment explanation
Indices: 163888--164524 Score: 1032
Period size: 220 Copynumber: 2.9 Consensus size: 220
163878 GTGGTATTTT
* * *
163888 CTTTTAAAGTCCACAACTCTGTGGCATCT-TTTTAAGTCCACAACTCTATGGCACCCTTTT-AAG
1 CTTTT-AAGTCCATAACTCCGTGGCATCTCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAAG
* * *
163951 TCCACAACTCCGTGGCACCGCACCCTTTT-AAGTCCATAACTCCGTGGCATCTCTTTTAATTCCA
65 TCCACAACTCCGT-G----GCACCCTTTTAAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCA
*
164015 CAACTCTGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGACCACAACTCCGTG
124 CAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGACCACAACTCCGTG
164080 GCACCCTTTTAAGTCCACAACTCTATGGCACC
189 GCACCCTTTTAAGTCCACAACTCTATGGCACC
*
164112 CTTTTAAGTCCATAACTCCGTGGCATCTCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGT
1 CTTTTAAGTCCATAACTCCGTGGCATCTCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAAGT
164177 CCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCC
66 CCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCC
*
164242 GTGGCACCCTTTTAAAGTCCACAACTCCGTGTCACCCTTTTAAGACCACAACTCCGTGGCACCCT
131 GTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGACCACAACTCCGTGGCACCCT
*
164307 TTTAAGTCCACAACTCTGTGGCACC
196 TTTAAGTCCACAACTCTATGGCACC
* *
164332 CTTTTAAGTCCATAACTCCGTGGCATCTCTTTTAAGTCCACAATTCTGTGGCACCTTTTTAAAGT
1 CTTTTAAGTCCATAACTCCGTGGCATCTCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAAGT
164397 CCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCC
66 CCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCC
* * *
164462 GTGGCACCCTTTT-AAGTCCACAACTCCGTGGCATCCTTTTAA-ATTCACAACTCTGTGGCACCC
131 GTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGA-CCACAACTCCGTGGCACCC
164525 ATTTCAAAGC
Statistics
Matches: 392, Mismatches: 17, Indels: 13
0.93 0.04 0.03
Matches are distributed among these distances:
218 1 0.00
219 44 0.11
220 256 0.65
221 19 0.05
223 21 0.05
224 35 0.09
225 16 0.04
ACGTcount: A:0.24, C:0.34, G:0.14, T:0.29
Consensus pattern (220 bp):
CTTTTAAGTCCATAACTCCGTGGCATCTCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAAGT
CCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCC
GTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGACCACAACTCCGTGGCACCCT
TTTAAGTCCACAACTCTATGGCACC
Found at i:164565 original size:32 final size:32
Alignment explanation
Indices: 164507--165012 Score: 802
Period size: 32 Copynumber: 15.8 Consensus size: 32
164497 CTTTTAAATT
* *
164507 CACAACTCTGTGGC-ACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
164538 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* * *
164570 CACAAATCTGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
164602 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
164634 CACAAGTCTGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
164666 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
164698 CACAAGTCGGTGGCAACCCTTTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
164730 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
164762 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
164794 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
164826 CACAAGTCGGTGGCAACCCA-TTCTAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTC-AAAGCCCA
*
164858 CACAAGTAGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
164890 CACAAGTCGGTGGCAA-CCTTTTCCAAAGCCCC
1 CACAAGTCGGTGGCAACCCATTT-CAAAGCCCA
*
164922 CACAAGTCGGTGGCAACCCATTTAAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
164954 CGCAAGTCGGTGGCAACCCATTTAAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* * *
164986 CGCAAGTCAGTGGCAACCCTTTTCAAA
1 CACAAGTCGGTGGCAACCCATTTCAAA
165013 TCACCATTTT
Statistics
Matches: 447, Mismatches: 23, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
31 20 0.04
32 419 0.94
33 8 0.02
ACGTcount: A:0.31, C:0.35, G:0.18, T:0.16
Consensus pattern (32 bp):
CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
Done.