Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold64
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7997333
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 95991 characters in sequence are not A, C, G, or T
File 41 of 45
Found at i:7250879 original size:51 final size:51
Alignment explanation
Indices: 7250784--7250898 Score: 133
Period size: 51 Copynumber: 2.3 Consensus size: 51
7250774 GGAAATAATA
* * * *
7250784 GGGTTAGAGTATCCCCGATTGTGAAAAATCGATATTCTGGAAAT-AAAGTCG
1 GGGTTGGAGTATCCCCGATGGTGAAAAATCGATATTCTGAAAATAAAACT-G
* * * *
7250835 GGGTTGGAGTATCCCCGATGGTGAAAAATTGGTGTTTTGAAAATAAAACTG
1 GGGTTGGAGTATCCCCGATGGTGAAAAATCGATATTCTGAAAATAAAACTG
*
7250886 AGGTTGGAGTATC
1 GGGTTGGAGTATC
7250899 TCCTCAGAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
51 50 0.93
52 4 0.07
ACGTcount: A:0.31, C:0.11, G:0.29, T:0.29
Consensus pattern (51 bp):
GGGTTGGAGTATCCCCGATGGTGAAAAATCGATATTCTGAAAATAAAACTG
Found at i:7250923 original size:79 final size:79
Alignment explanation
Indices: 7250836--7251355 Score: 572
Period size: 79 Copynumber: 6.6 Consensus size: 79
7250826 ATAAAGTCGG
* * *
7250836 GGTTGGAGTATCCCCGATGGTGAAAAATTGGTGTTTT-GAAAATAAAA-CTGAGGTTGGAGTATC
1 GGTTGGAGTATCCCCGATTGTGAAAAATCGGTATTTTAG-AAATAAAATC-GAGGTTGGAGTATC
* * *
7250899 TCCTCAGAAATAATAA
64 CCCTCAAAAATAACAA
* * * *
7250915 GGCTGGAGTATCCCCGCTTGTAAAAAATCGGTATTTTAGAAATAAAATCG-GTATTGGAGTATCC
1 GGTTGGAGTATCCCCGATTGTGAAAAATCGGTATTTTAGAAATAAAATCGAG-GTTGGAGTATCC
* **
7250979 CTTCGGAAATAACAA
65 CCTCAAAAATAACAA
*
7250994 GGTTGGAGTATCCCCGATTGTGGAAAATC-G-ATGTTTAGAAAATAAAATCGAGGTTGGAGTATC
1 GGTTGGAGTATCCCCGATTGTGAAAAATCGGTAT-TTTAG-AAATAAAATCGAGGTTGGAGTATC
7251057 CCCTCAAAAATAA-AA
64 CCCTCAAAAATAACAA
* * * * * * *
7251072 GGGTTAGAGTATCCCTGATTGTGGAAAATC-ATATTTTAAAAATAAATTC-AGGGTTGGAGTGTC
1 -GGTTGGAGTATCCCCGATTGTGAAAAATCGGTATTTTAGAAATAAAATCGA-GGTTGGAGTATC
* *
7251135 CTCTCAAAAATAACGA
64 CCCTCAAAAATAACAA
* * * *
7251151 GGTTGGAATATCCCCGATTGTGGAAAATCGGTATTGTAGAAATAAAAT-TAGGGTTGGAGTATCC
1 GGTTGGAGTATCCCCGATTGTGAAAAATCGGTATTTTAGAAATAAAATCGA-GGTTGGAGTATCC
**
7251215 CCTCAAAAATAACGG
65 CCTCAAAAATAACAA
* * * * * *
7251230 GGTTGGAGTATCCTCTATTGTGAAAAATTGATATTTTAGAAACAAAATCGAGGTTGGAATATCCC
1 GGTTGGAGTATCCCCGATTGTGAAAAATCGGTATTTTAGAAATAAAATCGAGGTTGGAGTATCCC
*
7251295 CTCGAAAATAACAA
66 CTCAAAAATAACAA
*
7251309 GGTTGGAGTATCCCCGATTGTGAAAAATCGGTGTTTTAGAAATAAAA
1 GGTTGGAGTATCCCCGATTGTGAAAAATCGGTATTTTAGAAATAAAA
7251356 AGATGAATGA
Statistics
Matches: 372, Mismatches: 56, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
77 3 0.01
78 67 0.18
79 296 0.80
80 6 0.02
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.28
Consensus pattern (79 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATCGGTATTTTAGAAATAAAATCGAGGTTGGAGTATCCC
CTCAAAAATAACAA
Found at i:7251180 original size:236 final size:236
Alignment explanation
Indices: 7250836--7251337 Score: 591
Period size: 236 Copynumber: 2.1 Consensus size: 236
7250826 ATAAAGTCGG
* * ** * * * *
7250836 GGTTGGAGTATCCCCGATGGTGAAAAATTGGTGTTTTGAAAATAAA-ACTGAGGTTGGAGTATCT
1 GGTTAGAGTATCCCCGATTGTGAAAAA-TCATATTTTAAAAATAAATTCAG-GGTTGGAGTATCT
* * * * * *
7250900 CCTCAGAAATAATAAGGCTGGAGTATCCCCGCTTGTAAAAAATCGGTATTTTAGAAATAAAA-TC
64 CCTCAAAAATAACAAGGCTGGAATATCCCCGATTGTAAAAAATCGGTATTGTAGAAATAAAATTA
* ** *
7250964 GGTATTGGAGTATCCCTTCGGAAATAACAAGGTTGGAGTATCCCCGATTGTGGAAAATCGAT-GT
129 GG-ATTGGAGTATCCCCTCAAAAATAACAAGGTTGGAGTATCCCCGATTGTGAAAAATCGATAGT
* *
7251028 TTAGAAAATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAA-AA
193 TTAG-AAACAAAATCGAGGTTGGAATATCCCCTCAAAAATAACAA
* * *
7251072 GGGTTAGAGTATCCCTGATTGTGGAAAATCATATTTTAAAAATAAATTCAGGGTTGGAGTGTC-C
1 -GGTTAGAGTATCCCCGATTGTGAAAAATCATATTTTAAAAATAAATTCAGGGTTGGAGTATCTC
* * **
7251136 TCTCAAAAATAACGAGGTTGGAATATCCCCGATTGTGGAAAATCGGTATTGTAGAAATAAAATTA
65 -CTCAAAAATAACAAGGCTGGAATATCCCCGATTGTAAAAAATCGGTATTGTAGAAATAAAATTA
* ** * * * *
7251201 GGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCTCTATTGTGAAAAATTGATATTT
129 GGATTGGAGTATCCCCTCAAAAATAACAAGGTTGGAGTATCCCCGATTGTGAAAAATCGATAGTT
*
7251266 TAGAAACAAAATCGAGGTTGGAATATCCCCTCGAAAATAACAA
194 TAGAAACAAAATCGAGGTTGGAATATCCCCTCAAAAATAACAA
*
7251309 GGTTGGAGTATCCCCGATTGTGAAAAATC
1 GGTTAGAGTATCCCCGATTGTGAAAAATC
7251338 GGTGTTTTAG
Statistics
Matches: 222, Mismatches: 38, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
235 1 0.00
236 186 0.84
237 35 0.16
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (236 bp):
GGTTAGAGTATCCCCGATTGTGAAAAATCATATTTTAAAAATAAATTCAGGGTTGGAGTATCTCC
TCAAAAATAACAAGGCTGGAATATCCCCGATTGTAAAAAATCGGTATTGTAGAAATAAAATTAGG
ATTGGAGTATCCCCTCAAAAATAACAAGGTTGGAGTATCCCCGATTGTGAAAAATCGATAGTTTA
GAAACAAAATCGAGGTTGGAATATCCCCTCAAAAATAACAA
Found at i:7262950 original size:20 final size:20
Alignment explanation
Indices: 7262878--7262950 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
7262868 TTTTACCCAG
**
7262878 ATGTATCGATA-AAATTTCA
1 ATGTATCGATACATTTTTCA
* * *
7262897 ATGTAT-GATACATGTATGA
1 ATGTATCGATACATTTTTCA
*
7262916 ATTTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
7262936 ATGTATCGATACATT
1 ATGTATCGATACATT
7262951 CTGTTTTTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 3
0.78 0.16 0.05
Matches are distributed among these distances:
18 4 0.09
19 15 0.35
20 24 0.56
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:7269850 original size:22 final size:23
Alignment explanation
Indices: 7269824--7269875 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 23
7269814 AATTTATAAT
7269824 TTTTAAAATTATT-TAAATATTA-
1 TTTTAAAATTATTATAAA-ATTAG
7269846 TTTT--AATTATTATAAAATTAG
1 TTTTAAAATTATTATAAAATTAG
7269867 TTTTGAAAA
1 TTTT-AAAA
7269876 ATTTCTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
20 11 0.44
21 8 0.32
22 4 0.16
24 2 0.08
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (23 bp):
TTTTAAAATTATTATAAAATTAG
Found at i:7269855 original size:20 final size:21
Alignment explanation
Indices: 7269830--7269870 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
7269820 TAATTTTTAA
7269830 AATTATT-TAAATATTA-TTTT
1 AATTATTATAAA-ATTAGTTTT
7269850 AATTATTATAAAATTAGTTTT
1 AATTATTATAAAATTAGTTTT
7269871 GAAAAATTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (21 bp):
AATTATTATAAAATTAGTTTT
Found at i:7269864 original size:11 final size:10
Alignment explanation
Indices: 7269815--7269865 Score: 52
Period size: 9 Copynumber: 5.1 Consensus size: 10
7269805 ATTTTTTAAA
*
7269815 ATTTATAATT
1 ATTTAAAATT
7269825 -TTTAAAATT
1 ATTTAAAATT
7269834 ATTTAAATATT
1 ATTTAAA-ATT
*
7269845 ATTT-TAATT
1 ATTTAAAATT
7269854 ATTATAAAATT
1 ATT-TAAAATT
7269865 A
1 A
7269866 GTTTTGAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
9 14 0.41
10 8 0.24
11 12 0.35
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (10 bp):
ATTTAAAATT
Found at i:7270262 original size:166 final size:163
Alignment explanation
Indices: 7270046--7270603 Score: 654
Period size: 166 Copynumber: 3.4 Consensus size: 163
7270036 TTTTAAAATG
* * * * *
7270046 AGTTTTCTATTCTATAAATATTTT-TGGGGTAATTTTTCTCAATTTAAAATTTTTAAAATTTATT
1 AGTTTTCTATTCCATAAATGTTTTCAGGGG--ATTTTTCTCAATTTAAAATTTTTAAAATTTGTC
* * *
7270110 TAACATTGTCATTAAACT-TTTTGTAAATTAGTTTTAAAATTTTCATTTATTTTCATAAATTTTT
64 TAACATTGTCATTAGACTCTTTT-TAAATTAGTTTTAAAA-ATTCATTTATTTTCATAAGTTTTT
*
7270174 CA-TTTTTCATTGAAATTCTTCTATTTTTGAAAAATTA
127 CATTTTTTC-TTGAAATTTTTCTATTTTTGAAAAATTA
** *
7270211 AGTTTTCTATTCCATAAATGTTTTCAGGGGACATTTTTCTTGATTTAAAATTTTTCAAATTTGTC
1 AGTTTTCTATTCCATAAATGTTTTCAGGGG--ATTTTTCTCAATTTAAAATTTTTAAAATTTGTC
* * ** * *
7270276 AAATATTGTCATTAGACTCCCTTTAAATTAGTTTTAAAAAATTCATTTCTTTTCATGAGTTTTTC
64 TAACATTGTCATTAGACTCTTTTTAAATTAGTTTT-AAAAATTCATTTATTTTCATAAGTTTTTC
* *
7270341 ATTTTTTCCTGAAATTTTTCTATTTTCGAAAAATTA
128 ATTTTTTCTTGAAATTTTTCTATTTTTGAAAAATTA
* * * *
7270377 AGTTTTCTATTCCATAAATGTTTTTGAGAGGATTTTTCTCGATTTCAAATTTTTAAAATTTGTCT
1 AGTTTTCTATTCCATAAATG-TTTTCAGGGGATTTTTCTCAATTTAAAATTTTTAAAATTTGTCT
* * * *
7270442 AACATTTTTATTAGACTCTTTTTAAATCAGTTTTGAAAAATTCATTTATTTTTATAAGTTTTTCA
65 AACATTGTCATTAGACTCTTTTTAAATTAGTTTT-AAAAATTCATTTATTTTCATAAGTTTTTCA
* * * ***
7270507 TTTTTTTTCTTAAAATTTTTTTATTTCTGAAAAACCG
129 --TTTTTTCTTGAAATTTTTCTATTTTTGAAAAATTA
* *
7270544 AGTTTTCTATTTCATAAATGTTTTCAAGGGGATTTTTCTTAATTTAAAATTTTTAAAATT
1 AGTTTTCTATTCCATAAATGTTTTC-AGGGGATTTTTCTCAATTTAAAATTTTTAAAATT
7270604 CATCTGTTAT
Statistics
Matches: 333, Mismatches: 52, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
165 107 0.32
166 130 0.39
167 96 0.29
ACGTcount: A:0.30, C:0.10, G:0.08, T:0.52
Consensus pattern (163 bp):
AGTTTTCTATTCCATAAATGTTTTCAGGGGATTTTTCTCAATTTAAAATTTTTAAAATTTGTCTA
ACATTGTCATTAGACTCTTTTTAAATTAGTTTTAAAAATTCATTTATTTTCATAAGTTTTTCATT
TTTTCTTGAAATTTTTCTATTTTTGAAAAATTA
Found at i:7270636 original size:167 final size:162
Alignment explanation
Indices: 7270046--7270652 Score: 626
Period size: 167 Copynumber: 3.7 Consensus size: 162
7270036 TTTTAAAATG
* * * *
7270046 AGTTTTCTATTCTATAAATATTTT-TGGGGTAATTTTTCTCAATTTAAAATTTTTAAAATTTATT
1 AGTTTTCTATTCCATAAATGTTTTCAGGGG--ATTTTTCTCAATTTAAAATTTTTAAAATTTATC
* * * *
7270110 TAACATTGTCATTAAACTTTTTGTAAATTAGTTTT-AAAATTTTCATTTATTTTCATAAATTTTT
64 TAACATTGTCATTAAACTCTTT-TAAATCAGTTTTGAAAA-ATTCATTTATTTTCATAAGTTTTT
*
7270174 CA-TTTTTCATTGAAATTCTTCTATTTTTGAAAAATTA
127 CATTTTTTC-TTGAAATTTTTCTA-TTTTGAAAAATTA
** * *
7270211 AGTTTTCTATTCCATAAATGTTTTCAGGGGACATTTTTCTTGATTTAAAATTTTTCAAATTTGTC
1 AGTTTTCTATTCCATAAATGTTTTCAGGGG--ATTTTTCTCAATTTAAAATTTTTAAAATTTATC
* * * * * * * *
7270276 AAATATTGTCATTAGACTCCCTTTAAATTAGTTTTAAAAAATTCATTTCTTTTCATGAGTTTTTC
64 TAACATTGTCATTAAACT-CTTTTAAATCAGTTTTGAAAAATTCATTTATTTTCATAAGTTTTTC
*
7270341 ATTTTTTCCTGAAATTTTTCTATTTTCGAAAAATTA
128 ATTTTTTCTTGAAATTTTTCTATTTT-GAAAAATTA
* * * * *
7270377 AGTTTTCTATTCCATAAATGTTTTTGAGAGGATTTTTCTCGATTTCAAATTTTTAAAATTTGTCT
1 AGTTTTCTATTCCATAAATG-TTTTCAGGGGATTTTTCTCAATTTAAAATTTTTAAAATTTATCT
* * * *
7270442 AACATTTTTATTAGACTCTTTTTAAATCAGTTTTGAAAAATTCATTTATTTTTATAAGTTTTTCA
65 AACATTGTCATTAAACTC-TTTTAAATCAGTTTTGAAAAATTCATTTATTTTCATAAGTTTTTCA
* * ***
7270507 TTTTTTTTCTTAAAATTTTTTTATTTCTGAAAAACCG
129 --TTTTTTCTTGAAATTTTTCTATTT-TGAAAAATTA
* * *
7270544 AGTTTTCTATTTCATAAATGTTTTCAAGGGGATTTTTCTTAATTTAAAATTTTTAAAATTCATCT
1 AGTTTTCTATTCCATAAATGTTTTC-AGGGGATTTTTCTCAATTTAAAATTTTTAAAATTTATCT
*** * ** *
7270609 GTTATTGTCATTAAATTCAAATTAAATCAGTTTTGAAAATTTCA
65 AACATTGTCATTAAACTC-TTTTAAATCAGTTTTGAAAAATTCA
7270653 AATTTTTTCA
Statistics
Matches: 370, Mismatches: 61, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
164 1 0.00
165 110 0.30
166 126 0.34
167 132 0.36
168 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.51
Consensus pattern (162 bp):
AGTTTTCTATTCCATAAATGTTTTCAGGGGATTTTTCTCAATTTAAAATTTTTAAAATTTATCTA
ACATTGTCATTAAACTCTTTTAAATCAGTTTTGAAAAATTCATTTATTTTCATAAGTTTTTCATT
TTTTCTTGAAATTTTTCTATTTTGAAAAATTA
Found at i:7272251 original size:140 final size:140
Alignment explanation
Indices: 7272037--7272445 Score: 572
Period size: 140 Copynumber: 2.9 Consensus size: 140
7272027 GTTAATTTAT
7272037 AATTAAATAAAAATTATTATCTTAA-TTTTTAAGATTTCTAATATTCCTATGGTTTTCCATAAGA
1 AATTAAATAAAAATTATTATCTTAATTTTTTAAGATTTCTAATATTCCTATGGTTTTCCATAAGA
7272101 GTATAGAAATCTTCAAAACTTTTTCGTATCTTTTCGGTT-TCCATTAAGGTACGAAATAAATTTT
66 GTATAGAAATCTTCAAAACTTTTT-GTATCTTTTCGGTTCTCCATTAAGGTACGAAATAAATTTT
7272165 TAAAAATTAAA
130 TAAAAATTAAA
* *
7272176 AATTAAATAAAAATTATTATCTTAATTTTTTAAGATTTCTAATATTCCTATGGTTTTCCATAGGG
1 AATTAAATAAAAATTATTATCTTAATTTTTTAAGATTTCTAATATTCCTATGGTTTTCCATAAGA
* * * * * * *
7272241 GTGTAAAAATCTTCAAAACTTTTTGTATTTTTTCGGTTCTCTATTAAGGTATGAAATGATTTTTT
66 GTATAGAAATCTTCAAAACTTTTTGTATCTTTTCGGTTCTCCATTAAGGTACGAAATAAATTTTT
***
7272306 TGGAATTAAA
131 AAAAATTAAA
* ** * *
7272316 AATTAAATAAAAATTATTATCTTACTTTTTTTAAGATTTCTAATATTTTTATGGTTTTTCATAAA
1 AATTAAATAAAAATTATTATCTTA-ATTTTTTAAGATTTCTAATATTCCTATGGTTTTCCATAAG
* * * **
7272381 AGTATAGAAATTTTCAAAAGTTTTTATATCTTTTTAGTTCTCCATTAAGGTAC-AAATAAGATTT
65 AGTATAGAAATCTTCAAAACTTTTTGTATCTTTTCGGTTCTCCATTAAGGTACGAAATAA-ATTT
7272445 T
129 T
7272446 CGAAATTTAC
Statistics
Matches: 235, Mismatches: 31, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
139 38 0.16
140 117 0.50
141 80 0.34
ACGTcount: A:0.36, C:0.09, G:0.10, T:0.46
Consensus pattern (140 bp):
AATTAAATAAAAATTATTATCTTAATTTTTTAAGATTTCTAATATTCCTATGGTTTTCCATAAGA
GTATAGAAATCTTCAAAACTTTTTGTATCTTTTCGGTTCTCCATTAAGGTACGAAATAAATTTTT
AAAAATTAAA
Found at i:7277485 original size:114 final size:114
Alignment explanation
Indices: 7277291--7277497 Score: 265
Period size: 114 Copynumber: 1.8 Consensus size: 114
7277281 TCCACTTACC
* * * *
7277291 AGATGAAAAATGGCTACACCCCTATTAGGGTTTTGGCCAGTGCACCATTTCACCATTATGAGAAT
1 AGATGAAAAATGCCTACACACCTATTAGGGTTGTGGCCAGTGCACCATTTCACCATTATAAGAAT
* *
7277356 AAATGTACTTTAAGTAATTCAATCGATATTATTTCATCTTGCACTTGCT
66 AAATGTACCTAAAGTAATTCAATCGATATTATTTCATCTTGCACTTGCT
* * * *
7277405 AGATGAAAAATGCCTACACACTTATTAAGGG-TGTGGCC-GATGCACCATTTTATCATTTTAAGA
1 AGATGAAAAATGCCTACACACCTATT-AGGGTTGTGGCCAG-TGCACCATTTCACCATTATAAGA
* * *
7277468 ATCAGTGTACCTAAAGTAATTCGATCGATA
64 ATAAATGTACCTAAAGTAATTCAATCGATA
7277498 ACCATCCATT
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
113 1 0.01
114 73 0.94
115 4 0.05
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Consensus pattern (114 bp):
AGATGAAAAATGCCTACACACCTATTAGGGTTGTGGCCAGTGCACCATTTCACCATTATAAGAAT
AAATGTACCTAAAGTAATTCAATCGATATTATTTCATCTTGCACTTGCT
Found at i:7281623 original size:20 final size:21
Alignment explanation
Indices: 7281580--7281621 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
7281570 TAAGAAGAAG
7281580 AGAAAAAAAGAAAGTAAAAAA
1 AGAAAAAAAGAAAGTAAAAAA
7281601 AGAAAAAAA-AAAGGTAAAAAA
1 AGAAAAAAAGAAA-GTAAAAAA
7281622 GAGCGTTTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (21 bp):
AGAAAAAAAGAAAGTAAAAAA
Found at i:7285219 original size:19 final size:19
Alignment explanation
Indices: 7285174--7285229 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
7285164 CTGCCAATTT
* *
7285174 CATGTATCAATACAATTGAG
1 CATGTATCGATACAA-TGAA
*
7285194 TATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
7285213 CATGTATCGATACAATG
1 CATGTATCGATACAATG
7285230 TATCGATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 19 0.59
20 13 0.41
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:7285232 original size:13 final size:13
Alignment explanation
Indices: 7285214--7285240 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7285204 TACAATGAAC
7285214 ATGTATCGATACA
1 ATGTATCGATACA
7285227 ATGTATCGATACA
1 ATGTATCGATACA
7285240 A
1 A
7285241 AACATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:7285251 original size:20 final size:20
Alignment explanation
Indices: 7285226--7285279 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
7285216 GTATCGATAC
7285226 AATGTATCGATACAAAACAT
1 AATGTATCGATACAAAACAT
*
7285246 AATGTATCGATACAAAGCAT
1 AATGTATCGATACAAAACAT
7285266 AATGTATCGATACA
1 AATGTATCGATACA
7285280 TCTGGATATG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.26
Consensus pattern (20 bp):
AATGTATCGATACAAAACAT
Found at i:7285515 original size:21 final size:20
Alignment explanation
Indices: 7285491--7285530 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7285481 TTTAAAAGAA
7285491 TAAAGCTTGTTTACGATTTTT
1 TAAAGCTT-TTTACGATTTTT
* *
7285512 TAAATCTTTTTCCGATTTT
1 TAAAGCTTTTTACGATTTT
7285531 ATTCATACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.23, C:0.12, G:0.10, T:0.55
Consensus pattern (20 bp):
TAAAGCTTTTTACGATTTTT
Found at i:7290932 original size:19 final size:19
Alignment explanation
Indices: 7290893--7290976 Score: 108
Period size: 19 Copynumber: 4.7 Consensus size: 19
7290883 TTTCAACGAT
7290893 TTGTATCGATACATAAAGTG
1 TTGTATCGATACAT-AAGTG
7290913 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
7290932 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
*
7290946 -TGTATCGATACATAAGTT
1 TTGTATCGATACATAAGTG
7290964 TTGTATCGATACA
1 TTGTATCGATACA
7290977 ATGTAAGCTA
Statistics
Matches: 58, Mismatches: 0, Indels: 13
0.82 0.00 0.18
Matches are distributed among these distances:
13 11 0.19
15 2 0.03
17 2 0.03
19 29 0.50
20 14 0.24
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:7290951 original size:13 final size:13
Alignment explanation
Indices: 7290933--7290957 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7290923 ACATAAGTGT
7290933 TGTATCGATACAA
1 TGTATCGATACAA
7290946 TGTATCGATACA
1 TGTATCGATACA
7290958 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:7290955 original size:32 final size:32
Alignment explanation
Indices: 7290914--7290981 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
7290904 CATAAAGTGT
7290914 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
7290946 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
7290978 TGTA
1 TGTA
7290982 AGCTACTGCC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:7291037 original size:13 final size:13
Alignment explanation
Indices: 7291019--7291043 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7291009 ATTACTCAAA
7291019 TGTATCGATACAT
1 TGTATCGATACAT
7291032 TGTATCGATACA
1 TGTATCGATACA
7291044 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7291096 original size:52 final size:52
Alignment explanation
Indices: 7291052--7291180 Score: 249
Period size: 52 Copynumber: 2.5 Consensus size: 52
7291042 CACTGATCTT
*
7291052 TGTATCGATACATGCATGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
7291104 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
7291156 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
7291181 TCATATTTCG
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 76 1.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:7292061 original size:20 final size:20
Alignment explanation
Indices: 7292036--7292083 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
7292026 AACCTTGATT
7292036 ATGCATTTTTACTATGTTTC
1 ATGCATTTTTACTATGTTTC
7292056 ATGCATTTTTACTATGTTTC
1 ATGCATTTTTACTATGTTTC
7292076 ATGCATTT
1 ATGCATTT
7292084 ACAACATGTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.21, C:0.15, G:0.10, T:0.54
Consensus pattern (20 bp):
ATGCATTTTTACTATGTTTC
Found at i:7292092 original size:20 final size:20
Alignment explanation
Indices: 7292036--7292092 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
7292026 AACCTTGATT
**
7292036 ATGCATTTTTACTATGTTTC
1 ATGCATTTCAACTATGTTTC
**
7292056 ATGCATTTTTACTATGTTTC
1 ATGCATTTCAACTATGTTTC
7292076 ATGCATTTACAAC-ATGT
1 ATGCATTT-CAACTATGT
7292093 CTAGCACCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
20 32 0.94
21 2 0.06
ACGTcount: A:0.25, C:0.16, G:0.11, T:0.49
Consensus pattern (20 bp):
ATGCATTTCAACTATGTTTC
Found at i:7296061 original size:3 final size:3
Alignment explanation
Indices: 7296047--7296084 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
7296037 CAAGTCAACT
* *
7296047 TCA TCA TTA TCA TCA TCA TCA TCA TCA TCT TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
7296085 TTTGATGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.29, C:0.32, G:0.00, T:0.39
Consensus pattern (3 bp):
TCA
Found at i:7297810 original size:19 final size:18
Alignment explanation
Indices: 7297761--7297851 Score: 65
Period size: 20 Copynumber: 4.7 Consensus size: 18
7297751 TGCTAGTTTG
*
7297761 ATGTATCGATACAATTAA
1 ATGTATCGATACAATGAA
*
7297779 ATATATGTCGATACAATGAA
1 ATGTA--TCGATACAATGAA
*
7297799 CATGTATCGATACAAAGCATA
1 -ATGTATCGATACAATG-A-A
* * *
7297820 ATGTATCAATACATCTGGAT
1 ATGTATCGATACA-AT-GAA
7297840 ATGTATCGATAC
1 ATGTATCGATAC
7297852 TTTGTAGGGT
Statistics
Matches: 57, Mismatches: 9, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
18 4 0.07
19 10 0.18
20 36 0.63
21 6 0.11
22 1 0.02
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (18 bp):
ATGTATCGATACAATGAA
Found at i:7301009 original size:28 final size:28
Alignment explanation
Indices: 7300976--7301029 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
7300966 TGGTTTTGGA
7300976 GATGACATTGTCTTTTTAAATGTTTATG
1 GATGACATTGTCTTTTTAAATGTTTATG
*
7301004 GATGACATTGTCTTTTTTAATGTTTA
1 GATGACATTGTCTTTTTAAATGTTTA
7301030 GGGTTCATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.24, C:0.07, G:0.17, T:0.52
Consensus pattern (28 bp):
GATGACATTGTCTTTTTAAATGTTTATG
Found at i:7303017 original size:7 final size:7
Alignment explanation
Indices: 7303007--7303033 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
7302997 TAAATACACA
7303007 AATAATT
1 AATAATT
7303014 AATAATT
1 AATAATT
7303021 AATAATT
1 AATAATT
7303028 AATAAT
1 AATAAT
7303034 ATTATAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AATAATT
Found at i:7305543 original size:31 final size:31
Alignment explanation
Indices: 7305499--7305557 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
7305489 TTATAAGGTC
7305499 TTAACAAAAAAAAATATAAAAT-ATAAATTAT
1 TTAACAAAAAAAAA-ATAAAATAATAAATTAT
* * *
7305530 TTAATAAATAAAAAATAATATAATAAAT
1 TTAACAAAAAAAAAATAAAATAATAAAT
7305558 ATAACATAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 6 0.25
31 18 0.75
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.31
Consensus pattern (31 bp):
TTAACAAAAAAAAAATAAAATAATAAATTAT
Found at i:7305566 original size:19 final size:18
Alignment explanation
Indices: 7305517--7305599 Score: 58
Period size: 19 Copynumber: 4.4 Consensus size: 18
7305507 AAAAAATATA
* *
7305517 AAATATAAATTATTTAAT
1 AAATATAAATAATATAAT
*
7305535 AAATAAAAAATAATATAAT
1 AAAT-ATAAATAATATAAT
* *
7305554 AAATATAACATAACATATTT
1 AAATATAA-ATAATATA-AT
* * *
7305574 AAATTTAATTAAAATAAT
1 AAATATAAATAATATAAT
*
7305592 TAATATAA
1 AAATATAA
7305600 TATTTTTAAA
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
18 14 0.28
19 28 0.56
20 8 0.16
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AAATATAAATAATATAAT
Found at i:7305608 original size:23 final size:22
Alignment explanation
Indices: 7305582--7305640 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 22
7305572 TTAAATTTAA
7305582 TTAAAATAATTAATATAATATT
1 TTAAAATAATTAATATAATATT
* * *
7305604 TTTAAATAAAT-ATATTATATT
1 TTAAAATAATTAATATAATATT
*
7305625 TTAAAAT-TTTAATATA
1 TTAAAATAATTAATATA
7305641 TTTAATAATT
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
20 1 0.03
21 19 0.66
22 9 0.31
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
TTAAAATAATTAATATAATATT
Found at i:7305639 original size:16 final size:18
Alignment explanation
Indices: 7305595--7305670 Score: 66
Period size: 19 Copynumber: 4.2 Consensus size: 18
7305585 AAATAATTAA
* **
7305595 TATAATATTTTTAAATAAA
1 TATAATATATTTAAA-ATT
*
7305614 TATATTATATTTTAAAATT
1 TATAATATA-TTTAAAATT
7305633 T-TAATATATTTAATAATT
1 TATAATATATTTAA-AATT
*
7305651 TATATTATATTT-AAATT
1 TATAATATATTTAAAATT
7305668 TAT
1 TAT
7305671 GCTACTTTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
17 12 0.25
18 12 0.25
19 18 0.38
20 6 0.12
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
TATAATATATTTAAAATT
Found at i:7305667 original size:17 final size:18
Alignment explanation
Indices: 7305614--7305670 Score: 73
Period size: 17 Copynumber: 3.2 Consensus size: 18
7305604 TTTAAATAAA
7305614 TATATTATATTTTAAAATT
1 TATATTATA-TTTAAAATT
*
7305633 T-TAATATATTTAATAATT
1 TATATTATATTTAA-AATT
7305651 TATATTATATTT-AAATT
1 TATATTATATTTAAAATT
7305668 TAT
1 TAT
7305671 GCTACTTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
17 12 0.35
18 12 0.35
19 10 0.29
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TATATTATATTTAAAATT
Found at i:7306155 original size:7 final size:7
Alignment explanation
Indices: 7306139--7306189 Score: 59
Period size: 7 Copynumber: 7.1 Consensus size: 7
7306129 TGTTATTTAA
7306139 TAAA-TT
1 TAAATTT
7306145 TAAATTT
1 TAAATTT
7306152 TAAATTT
1 TAAATTT
7306159 TAATATTT
1 TAA-ATTT
*
7306167 AAAATTT
1 TAAATTT
7306174 TAATATTT
1 TAA-ATTT
*
7306182 AAAATTT
1 TAAATTT
7306189 T
1 T
7306190 TTTTAATCTT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
6 4 0.11
7 22 0.58
8 12 0.32
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (7 bp):
TAAATTT
Found at i:7306182 original size:22 final size:21
Alignment explanation
Indices: 7306132--7306188 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 21
7306122 TATAAGGTGT
7306132 TATTTAATAAATTTAAATTTTAA
1 TATTTAAT--ATTTAAATTTTAA
7306155 -ATTTTAATATTTAAAATTTTAA
1 TA-TTTAATATTT-AAATTTTAA
*
7306177 TATTTAAAATTT
1 TATTTAATATTT
7306189 TTTTTAATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 4 0.13
22 19 0.63
23 7 0.23
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
TATTTAATATTTAAATTTTAA
Found at i:7306184 original size:15 final size:15
Alignment explanation
Indices: 7306132--7306189 Score: 82
Period size: 15 Copynumber: 3.9 Consensus size: 15
7306122 TATAAGGTGT
*
7306132 TATTTAATAAATTTAA
1 TATTTAA-AATTTTAA
*
7306148 -ATTTTAAATTTTAA
1 TATTTAAAATTTTAA
7306162 TATTTAAAATTTTAA
1 TATTTAAAATTTTAA
7306177 TATTTAAAATTTT
1 TATTTAAAATTTT
7306190 TTTTAATCTT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
14 7 0.18
15 31 0.82
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TATTTAAAATTTTAA
Found at i:7306890 original size:22 final size:22
Alignment explanation
Indices: 7306865--7306906 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7306855 TATTTTTATT
* *
7306865 TAAATTTAATTATAAAAATATG
1 TAAATATAAATATAAAAATATG
7306887 TAAATATAAATATAAAAATA
1 TAAATATAAATATAAAAATA
7306907 ATTTTAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (22 bp):
TAAATATAAATATAAAAATATG
Found at i:7308387 original size:17 final size:17
Alignment explanation
Indices: 7308360--7308399 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 17
7308350 AATAATTAAT
7308360 AATTATATATTTA-TATCA
1 AATT-TATATTTATTAT-A
7308378 AATTTATATTTATTATA
1 AATTTATATTTATTATA
7308395 AATTT
1 AATTT
7308400 TTTTCTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (17 bp):
AATTTATATTTATTATA
Found at i:7308605 original size:13 final size:14
Alignment explanation
Indices: 7308581--7308609 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7308571 ATTTTTATTA
7308581 TTGATTTGATTAAT
1 TTGATTTGATTAAT
7308595 TTGATTT-ATTAAT
1 TTGATTTGATTAAT
7308608 TT
1 TT
7308610 AATTAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (14 bp):
TTGATTTGATTAAT
Found at i:7308648 original size:20 final size:20
Alignment explanation
Indices: 7308629--7308666 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7308619 AATCGGATTA
7308629 AATT-AAAATAATTTTAATT
1 AATTAAAAATAATTTTAATT
* *
7308648 ATTTAAAAATATTTTTAAT
1 AATTAAAAATAATTTTAAT
7308667 ATTAAATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
AATTAAAAATAATTTTAATT
Found at i:7308677 original size:20 final size:20
Alignment explanation
Indices: 7308633--7308677 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
7308623 GGATTAAATT
*
7308633 AAAATAATTTTAATTATTTA
1 AAAATAATTTTAATTATTAA
*
7308653 AAAATATTTTTAA-TATTAA
1 AAAATAATTTTAATTATTAA
7308672 ATAAAT
1 A-AAAT
7308678 GATAAATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
AAAATAATTTTAATTATTAA
Found at i:7309652 original size:2 final size:2
Alignment explanation
Indices: 7309645--7309681 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
7309635 GACTCCAACA
*
7309645 AT AT AT AT AT AT AT AT AT CT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7309682 GAGAGAGAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7309686 original size:2 final size:2
Alignment explanation
Indices: 7309681--7309710 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7309671 ATATATATAT
7309681 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7309711 TGAAGGTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7324721 original size:20 final size:20
Alignment explanation
Indices: 7324696--7324733 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7324686 ACATTTTATT
7324696 GAAGCTATTTATACTTTTTC
1 GAAGCTATTTATACTTTTTC
*
7324716 GAAGCTATTTATAGTTTT
1 GAAGCTATTTATACTTTT
7324734 ATACCAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.11, G:0.13, T:0.50
Consensus pattern (20 bp):
GAAGCTATTTATACTTTTTC
Found at i:7326364 original size:2 final size:2
Alignment explanation
Indices: 7326357--7326400 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
7326347 TATAAAATTG
7326357 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7326399 AT
1 AT
7326401 TCTATTGCTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7330259 original size:18 final size:18
Alignment explanation
Indices: 7330236--7330271 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7330226 AAATAAATTA
7330236 TTAAAATAATATTATTTT
1 TTAAAATAATATTATTTT
* *
7330254 TTAAAATATTCTTATTTT
1 TTAAAATAATATTATTTT
7330272 ATTCGCTTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (18 bp):
TTAAAATAATATTATTTT
Found at i:7330391 original size:19 final size:16
Alignment explanation
Indices: 7330352--7330384 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
7330342 AGTATTTCGT
7330352 AATTT-TTTATTATTA
1 AATTTATTTATTATTA
7330367 AATTTATTTATTATTA
1 AATTTATTTATTATTA
7330383 AA
1 AA
7330385 ATATTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
AATTTATTTATTATTA
Found at i:7330431 original size:17 final size:17
Alignment explanation
Indices: 7330376--7330443 Score: 57
Period size: 17 Copynumber: 3.7 Consensus size: 17
7330366 AAATTTATTT
*
7330376 ATTATTAAAATATTTAAA
1 ATTATTTAAA-ATTTAAA
*
7330394 ATTATTCGAGAAATTTTTAAAA
1 ATTATT-TA-AAA--TTT-AAA
7330416 ATT-TTTAAAATTTAAA
1 ATTATTTAAAATTTAAA
7330432 ATTATTTAAAAT
1 ATTATTTAAAAT
7330444 AAAATTGTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 13
0.74 0.04 0.23
Matches are distributed among these distances:
16 6 0.14
17 11 0.26
18 6 0.14
19 5 0.12
20 3 0.07
21 5 0.12
22 6 0.14
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.46
Consensus pattern (17 bp):
ATTATTTAAAATTTAAA
Found at i:7330438 original size:10 final size:10
Alignment explanation
Indices: 7330376--7330443 Score: 51
Period size: 10 Copynumber: 7.2 Consensus size: 10
7330366 AAATTTATTT
7330376 ATTA-TTAAA
1 ATTATTTAAA
7330385 A-TATTTAAA
1 ATTATTTAAA
*
7330394 ATTATTCGAGAA
1 ATTATT-TA-AA
7330406 ATT-TTTAAAA
1 ATTATTT-AAA
7330416 ATT-TTT-AA
1 ATTATTTAAA
7330424 A--ATTTAAA
1 ATTATTTAAA
7330432 ATTATTTAAA
1 ATTATTTAAA
7330442 AT
1 AT
7330444 AAAATTGTTT
Statistics
Matches: 48, Mismatches: 2, Indels: 17
0.72 0.03 0.25
Matches are distributed among these distances:
7 3 0.06
8 8 0.17
9 7 0.15
10 21 0.44
11 4 0.08
12 5 0.10
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.46
Consensus pattern (10 bp):
ATTATTTAAA
Found at i:7331048 original size:168 final size:167
Alignment explanation
Indices: 7330618--7331096 Score: 420
Period size: 167 Copynumber: 2.8 Consensus size: 167
7330608 AATTTCAAAG
* * *
7330618 AAAAAAACATAAATTGACATTTTCTTATTAAAATAAGATAGTTTTTTATGCCCAAAAAATTTGTT
1 AAAAAAAAATAAATTGACATTTTCATATTAAAATAAGATAGTTTTTTAAG-CC-AAAAATTT-TT
* * *
7330683 TCACATAACTTTAGA-TTTAATTTTTTTAATTATTTATCGAATAACTTTAGATTCTTTTAATAAT
63 T-ACATAA-TTTAAATTTTAATTTTTTTAAATATTTATCGAATAACTTTAGATTCATTTAATAAT
* * *
7330747 AAAATGTATTTTCCAATTAAAAAAATAAAATGTGATAAGTAT
126 AAAATGCATTTACCAATTAAAAAAATAAAATGTAATAAGTAT
* ** * * * * ***
7330789 AAAATAAAAATATAAATTGGCAAATTCATATTAAAATACGACAATTTCTTAAGCCAATTTTTTTT
1 -AAA-AAAAA-ATAAATTGACATTTTCATATTAAAATAAGATAGTTTTTTAAGCCAA-AAATTTT
* * * * * *
7330854 TTACAT-ACTTAAATTTTAA-GTTTTTAAATATTTATGGAATGATTTTATATT-ATTTAATAAT-
62 TTACATAATTTAAATTTTAATTTTTTTAAATATTTATCGAATAACTTTAGATTCATTTAATAATA
* * * * *
7330915 AAGTGCATTTACTAGA-TAAAATATTACAAA-GTAATAAGTCT
127 AAATGCATTTACCA-ATTAAAAAAATA-AAATGTAATAAGTAT
* * *
7330956 AAAAAAAAGTAAATTGACATTTTCGTATTAAAATATGATAGTTTTTTAAGCTCAAAAATTATTTT
1 AAAAAAAAATAAATTGACATTTTCATATTAAAATAAGATAGTTTTTTAAGC-CAAAAATT-TTTT
* * * *
7331021 ACATAATTTTAAATTTTAATTTTTTTAAATATTTATTGAATAA-TTAAAAAT--TTTAATAATAA
64 ACATAA-TTTAAATTTTAATTTTTTTAAATATTTATCGAATAACTTTAGATTCATTTAATAATAA
*
7331083 AATGTATTTACCAA
128 AATGCATTTACCAA
7331097 ATAATAAATT
Statistics
Matches: 243, Mismatches: 52, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
164 36 0.15
165 16 0.07
166 14 0.06
167 54 0.22
168 33 0.14
169 30 0.12
170 6 0.02
171 4 0.02
172 8 0.03
173 9 0.04
174 33 0.14
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (167 bp):
AAAAAAAAATAAATTGACATTTTCATATTAAAATAAGATAGTTTTTTAAGCCAAAAATTTTTTAC
ATAATTTAAATTTTAATTTTTTTAAATATTTATCGAATAACTTTAGATTCATTTAATAATAAAAT
GCATTTACCAATTAAAAAAATAAAATGTAATAAGTAT
Found at i:7331283 original size:28 final size:29
Alignment explanation
Indices: 7331235--7331295 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
7331225 ATCGCATGGA
7331235 TAAAATAATAATACTTTGATAAATAATTT
1 TAAAATAATAATACTTTGATAAATAATTT
* * * *
7331264 TAAAAT-ATATTATTTTGATAATTTATTT
1 TAAAATAATAATACTTTGATAAATAATTT
7331292 TAAA
1 TAAA
7331296 TAAGAGGTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 22 0.79
29 6 0.21
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.48
Consensus pattern (29 bp):
TAAAATAATAATACTTTGATAAATAATTT
Found at i:7335567 original size:13 final size:13
Alignment explanation
Indices: 7335549--7335574 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7335539 CAATTTTTTG
7335549 TGTATCGATACAT
1 TGTATCGATACAT
7335562 TGTATCGATACAT
1 TGTATCGATACAT
7335575 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7335639 original size:21 final size:20
Alignment explanation
Indices: 7335613--7335689 Score: 91
Period size: 21 Copynumber: 3.8 Consensus size: 20
7335603 CTGCCAAGAA
*
7335613 ATGTATCGATACATATTTTTT
1 ATGTATCGATACAT-TTTTTC
****
7335634 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTTTTTC
7335654 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TTTTTC
7335675 ATGTATCGATACATT
1 ATGTATCGATACATT
7335690 GCAACATGTA
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.43
Consensus pattern (20 bp):
ATGTATCGATACATTTTTTC
Found at i:7335659 original size:20 final size:20
Alignment explanation
Indices: 7335634--7335706 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
7335624 CATATTTTTT
7335634 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
7335654 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
7335675 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
7335695 ATGTATCGATAC
1 ATGTATCGATAC
7335707 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:7335673 original size:41 final size:41
Alignment explanation
Indices: 7335613--7335706 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
7335603 CTGCCAAGAA
*
7335613 ATGTATCGATACATATTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATATTTTTCATGTATCGATACATTGCAAC
*
7335654 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATATTTTTCATGTATCGATACATTGCAAC
7335695 ATGTATCGATAC
1 ATGTATCGATAC
7335707 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATATTTTTCATGTATCGATACATTGCAAC
Found at i:7336364 original size:31 final size:31
Alignment explanation
Indices: 7336326--7336389 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
7336316 CCCCATTTAT
7336326 TAAAAAATCTCCCCCTTAATCAAGTAATTCA
1 TAAAAAATCTCCCCCTTAATCAAGTAATTCA
7336357 TAAAAAATCTCCCCCTTAATCAAGTAATTCA
1 TAAAAAATCTCCCCCTTAATCAAGTAATTCA
7336388 TA
1 TA
7336390 TCAAAATTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.42, C:0.25, G:0.03, T:0.30
Consensus pattern (31 bp):
TAAAAAATCTCCCCCTTAATCAAGTAATTCA
Found at i:7338197 original size:13 final size:13
Alignment explanation
Indices: 7338179--7338217 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
7338169 ATAATCACCC
*
7338179 TGTATCGATACAG
1 TGTATCGATACAA
7338192 TGTATCGATACAA
1 TGTATCGATACAA
7338205 TGTATCGATACAA
1 TGTATCGATACAA
7338218 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:7338228 original size:20 final size:20
Alignment explanation
Indices: 7338203--7338281 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
7338193 GTATCGATAC
7338203 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
7338223 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
*
7338248 GATGTATCGATACACAA-AAA
1 AATGTATCGATACA-AAGAAA
*
7338268 CATGTATCGATACA
1 AATGTATCGATACA
7338282 TTTTGGACAT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
20 32 0.65
25 16 0.33
26 1 0.02
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:7339585 original size:15 final size:15
Alignment explanation
Indices: 7339565--7339595 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7339555 ATTTCGTTTG
*
7339565 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
7339580 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
7339595 G
1 G
7339596 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:7343675 original size:13 final size:13
Alignment explanation
Indices: 7343657--7343682 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7343647 CAATTTTTTG
7343657 TGTATCGATACAT
1 TGTATCGATACAT
7343670 TGTATCGATACAT
1 TGTATCGATACAT
7343683 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7343747 original size:21 final size:20
Alignment explanation
Indices: 7343721--7343797 Score: 91
Period size: 21 Copynumber: 3.8 Consensus size: 20
7343711 CTGCCAAGAA
*
7343721 ATGTATCGATACATATTTTTT
1 ATGTATCGATACAT-TTTTTC
****
7343742 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTTTTTC
7343762 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TTTTTC
7343783 ATGTATCGATACATT
1 ATGTATCGATACATT
7343798 GCAACATGTA
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.43
Consensus pattern (20 bp):
ATGTATCGATACATTTTTTC
Found at i:7343767 original size:20 final size:20
Alignment explanation
Indices: 7343742--7343834 Score: 107
Period size: 20 Copynumber: 4.6 Consensus size: 20
7343732 CATATTTTTT
7343742 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
7343762 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
7343783 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
* *
7343803 ATGTATCGATACTTTG-AATT
1 ATGTATCGATACATTGCAA-C
7343823 ATGTATCGATAC
1 ATGTATCGATAC
7343835 TTTTAGGGGT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
19 2 0.03
20 43 0.70
21 16 0.26
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:7343781 original size:41 final size:41
Alignment explanation
Indices: 7343721--7343814 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
7343711 CTGCCAAGAA
*
7343721 ATGTATCGATACATATTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATATTTTTCATGTATCGATACATTGCAAC
*
7343762 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATATTTTTCATGTATCGATACATTGCAAC
7343803 ATGTATCGATAC
1 ATGTATCGATAC
7343815 TTTGAATTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATATTTTTCATGTATCGATACATTGCAAC
Found at i:7350968 original size:20 final size:20
Alignment explanation
Indices: 7350921--7350995 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
7350911 AAAAAGACAT
*
7350921 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
7350940 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
7350961 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
7350981 AATGTATCGATACAT
1 AATGTATCGATACAT
7350996 CAGGGTATGA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:7350989 original size:40 final size:39
Alignment explanation
Indices: 7350918--7350995 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
7350908 GGTAAAAAGA
* *
7350918 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
7350957 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
7350996 CAGGGTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:7352171 original size:14 final size:14
Alignment explanation
Indices: 7352152--7352184 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
7352142 TTAATTAAAA
*
7352152 TATAACGTTCAAAC
1 TATAACATTCAAAC
7352166 TATAACATTCAAAC
1 TATAACATTCAAAC
7352180 TATAA
1 TATAA
7352185 TATTAGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.48, C:0.18, G:0.03, T:0.30
Consensus pattern (14 bp):
TATAACATTCAAAC
Found at i:7353490 original size:16 final size:16
Alignment explanation
Indices: 7353466--7353497 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7353456 ATTGGACATG
7353466 CAGTATTGATAAAAAT
1 CAGTATTGATAAAAAT
*
7353482 CAGTGTTGATAAAAAT
1 CAGTATTGATAAAAAT
7353498 GGACAACACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.16, T:0.31
Consensus pattern (16 bp):
CAGTATTGATAAAAAT
Found at i:7354263 original size:6 final size:6
Alignment explanation
Indices: 7354252--7354293 Score: 66
Period size: 6 Copynumber: 7.0 Consensus size: 6
7354242 ATCTTAAGTC
* *
7354252 CAAGCT CAAGCT CAAGCT CAAGCT CAAGCC CAAGCC CAAGCT
1 CAAGCT CAAGCT CAAGCT CAAGCT CAAGCT CAAGCT CAAGCT
7354294 TTTTTTTTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.33, C:0.38, G:0.17, T:0.12
Consensus pattern (6 bp):
CAAGCT
Found at i:7355992 original size:14 final size:14
Alignment explanation
Indices: 7355973--7356000 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7355963 TAAATAAATG
7355973 ATAAAAAAATTTAA
1 ATAAAAAAATTTAA
7355987 ATAAAAAAATTTAA
1 ATAAAAAAATTTAA
7356001 TTTATAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
ATAAAAAAATTTAA
Found at i:7356615 original size:24 final size:23
Alignment explanation
Indices: 7356570--7356615 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
7356560 TTATGAAAAA
*
7356570 ATATTTATAATTATTATACAATT
1 ATATTTATAATCATTATACAATT
7356593 ATATTTAATAATGCATTAT-CAAT
1 ATATTT-ATAAT-CATTATACAAT
7356616 AAAAGTAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 6 0.30
24 9 0.45
25 5 0.25
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (23 bp):
ATATTTATAATCATTATACAATT
Found at i:7357195 original size:88 final size:88
Alignment explanation
Indices: 7357019--7357179 Score: 270
Period size: 88 Copynumber: 1.8 Consensus size: 88
7357009 AATTAAAGAA
*
7357019 TACAACATTCAAATAAAATATATTTAAATAAAACATTATTTTTAATTCCTAAAATCAAACAAATA
1 TACAACATTCAAATAAAATATATTTAAATAAAACATAATTTTTAATTCCTAAAATCAAACAAATA
7357084 AAGTTTTTCGATTATGAAATATT
66 AAGTTTTTCGATTATGAAATATT
* * *
7357107 TACAACATTCAAATATAATATATTTAAATAAATATATAATTTTTAATTTCT-AAATCAAACAAAT
1 TACAACATTCAAATAAAATATATTTAAATAAA-ACATAATTTTTAATTCCTAAAATCAAACAAAT
7357171 AAAGTTTTT
65 AAAGTTTTT
7357180 TTACTTTTAA
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
88 53 0.78
89 15 0.22
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.39
Consensus pattern (88 bp):
TACAACATTCAAATAAAATATATTTAAATAAAACATAATTTTTAATTCCTAAAATCAAACAAATA
AAGTTTTTCGATTATGAAATATT
Found at i:7357994 original size:2 final size:2
Alignment explanation
Indices: 7357987--7358016 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7357977 AGTAAAAAGT
7357987 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7358017 AATGTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7358555 original size:65 final size:65
Alignment explanation
Indices: 7358480--7358618 Score: 260
Period size: 65 Copynumber: 2.1 Consensus size: 65
7358470 AATTTATATT
*
7358480 CGTATTCCAACATATTCCACATTTAAATTTACTTTTAAGATAATCATGTACTATAAATTATTATG
1 CGTATTCCAACATATTCCACATTTAAATTTACTTTTAAGATAATCATATACTATAAATTATTATG
*
7358545 CGTATTCCAACATATTTCACATTTAAATTTACTTTTAAGATAATCATATACTATAAATTATTATG
1 CGTATTCCAACATATTCCACATTTAAATTTACTTTTAAGATAATCATATACTATAAATTATTATG
7358610 CGTATTCCA
1 CGTATTCCA
7358619 CATTTAAATT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 72 1.00
ACGTcount: A:0.37, C:0.16, G:0.06, T:0.42
Consensus pattern (65 bp):
CGTATTCCAACATATTCCACATTTAAATTTACTTTTAAGATAATCATATACTATAAATTATTATG
Found at i:7359200 original size:2 final size:2
Alignment explanation
Indices: 7359193--7359232 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
7359183 TATAAAGTAG
7359193 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7359233 TCTATTGCTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7360168 original size:9 final size:9
Alignment explanation
Indices: 7360154--7360179 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
7360144 CAATTACTTT
7360154 TTTTTTTTC
1 TTTTTTTTC
7360163 TTTTTTTTC
1 TTTTTTTTC
7360172 TTTTTTTT
1 TTTTTTTT
7360180 TAACAAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:7362538 original size:95 final size:95
Alignment explanation
Indices: 7362372--7362559 Score: 313
Period size: 95 Copynumber: 2.0 Consensus size: 95
7362362 TAAAGGAGCC
* * *
7362372 CTGCAATTTGGTATTGTACATTAAATGTTCCTATTGGAAGAGATCAACTCTGCACGTCAATTTTC
1 CTGCAATTTGATATTGTACATTAAATGTTCCCATTGGAAGAGATCAACTCTGCACGGCAATTTTC
7362437 ACTTTTAGATGAAGGTCACTGTTAGAACAG
66 ACTTTTAGATGAAGGTCACTGTTAGAACAG
*
7362467 CTGCAATTTGATATTGTACATTAAATGTTCCCATTGGAAGAGATCAACTCTGCATGGCAATTTTC
1 CTGCAATTTGATATTGTACATTAAATGTTCCCATTGGAAGAGATCAACTCTGCACGGCAATTTTC
* **
7362532 ATTTTTAGATGACTGTCACTGTTAGAAC
66 ACTTTTAGATGAAGGTCACTGTTAGAAC
7362560 CGATCAACTT
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
95 86 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (95 bp):
CTGCAATTTGATATTGTACATTAAATGTTCCCATTGGAAGAGATCAACTCTGCACGGCAATTTTC
ACTTTTAGATGAAGGTCACTGTTAGAACAG
Found at i:7363199 original size:14 final size:14
Alignment explanation
Indices: 7363173--7363228 Score: 62
Period size: 13 Copynumber: 4.0 Consensus size: 14
7363163 CTCCAATTTC
7363173 AAAATAA-ATTATT
1 AAAATAATATTATT
7363186 AAAATAATATTATTTT
1 AAAATAATATTA--TT
*
7363202 AAAATTAT-TTATT
1 AAAATAATATTATT
*
7363215 AAAATATTATTATT
1 AAAATAATATTATT
7363229 TTATTCATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
13 15 0.42
14 9 0.25
15 3 0.08
16 9 0.25
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AAAATAATATTATT
Found at i:7363337 original size:21 final size:21
Alignment explanation
Indices: 7363313--7363377 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 21
7363303 TTAAATTTAT
7363313 TTATTTTTAAAATATTTAAAA
1 TTATTTTTAAAATATTTAAAA
**
7363334 TTATTTGAAAAATATTTAAAA
1 TTATTTTTAAAATATTTAAAA
*
7363355 --ATATTT-AAA-ATTTAAAA
1 TTATTTTTAAAATATTTAAAA
7363372 TTATTT
1 TTATTT
7363378 AAAATAATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
17 8 0.22
18 3 0.08
19 6 0.17
21 19 0.53
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TTATTTTTAAAATATTTAAAA
Found at i:7363338 original size:10 final size:10
Alignment explanation
Indices: 7363318--7363387 Score: 76
Period size: 10 Copynumber: 7.3 Consensus size: 10
7363308 TTTATTTATT
7363318 TTTAAAA-TA
1 TTTAAAATTA
7363327 TTTAAAATTA
1 TTTAAAATTA
*
7363337 TTTGAAAAATA
1 TTT-AAAATTA
*
7363348 TTTAAAAATA
1 TTTAAAATTA
7363358 TTT-AAA--A
1 TTTAAAATTA
7363365 TTTAAAATTA
1 TTTAAAATTA
*
7363375 TTTAAAATAA
1 TTTAAAATTA
7363385 TTT
1 TTT
7363388 TTTTGACTTA
Statistics
Matches: 54, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
7 4 0.07
8 3 0.06
9 10 0.19
10 28 0.52
11 9 0.17
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (10 bp):
TTTAAAATTA
Found at i:7363369 original size:17 final size:17
Alignment explanation
Indices: 7363347--7363382 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
7363337 TTTGAAAAAT
7363347 ATTTAAAAATATTTAAA
1 ATTTAAAAATATTTAAA
*
7363364 ATTTAAAATTATTTAAA
1 ATTTAAAAATATTTAAA
7363381 AT
1 AT
7363383 AATTTTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTTAAAAATATTTAAA
Found at i:7367039 original size:28 final size:28
Alignment explanation
Indices: 7366999--7367069 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
7366989 TCATAATCGA
* * *
7366999 GGATACTCCAACCTCGTTATTTCCTAGG
1 GGATACTCTAACCCCGTTATTTCCAAGG
7367027 GGATACTCTAACCCCGTTATTTCCAAGG
1 GGATACTCTAACCCCGTTATTTCCAAGG
*
7367055 AGATACTCTAACCCC
1 GGATACTCTAACCCC
7367070 AATTTTATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.28
Consensus pattern (28 bp):
GGATACTCTAACCCCGTTATTTCCAAGG
Found at i:7367113 original size:79 final size:78
Alignment explanation
Indices: 7367025--7367245 Score: 255
Period size: 79 Copynumber: 2.8 Consensus size: 78
7367015 TTATTTCCTA
* * * *
7367025 GGGGATACTCTAACCCCGTTA-TTTCCAAGGAGATACTCTAACCCCAATTTTATTTTCAAAATAC
1 GGGGATACTCTAACCCCGTTATTTTCAAAGG-GATACTCAAACCCCGATTTTATTTTCAAAACAC
*
7367089 CGATTTTCCATGATC
65 CGA-TTTCCATAATC
* * *** * *
7367104 GGGGATACTCCAACCCTGTTATTTTCAAAGGGATACTCAAACTTTGGTTTTATTTCCAAAACACC
1 GGGGATACTCTAACCCCGTTATTTTCAAAGGGATACTCAAACCCCGATTTTATTTTCAAAACACC
7367169 GATTTCCATAATC
66 GATTTCCATAATC
* ** * *
7367182 GGGGATACTCTAACCTCGTTATTTTTTGATGGGATACTCCAACCCCGATTTTATTTTCAAAACA
1 GGGGATACTCTAACCCCGTTA-TTTTCAAAGGGATACTCAAACCCCGATTTTATTTTCAAAACA
7367246 TCAATTTTCC
Statistics
Matches: 116, Mismatches: 24, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
78 28 0.24
79 80 0.69
80 8 0.07
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.34
Consensus pattern (78 bp):
GGGGATACTCTAACCCCGTTATTTTCAAAGGGATACTCAAACCCCGATTTTATTTTCAAAACACC
GATTTCCATAATC
Found at i:7367125 original size:107 final size:106
Alignment explanation
Indices: 7366937--7367141 Score: 259
Period size: 107 Copynumber: 1.9 Consensus size: 106
7366927 TCCAACCTTA
* * * * *
7366937 TTATTTTCGAGGAGATACTCCAACCCGATTTTATTTCCAAAACATCAATTTTTCATAATCGAGGA
1 TTATTTCCAAGGAGATACTCCAACCCAATTTTATTTCCAAAACACCAATTTTCCATAATCGAGGA
* *
7367002 TACTCCAACCTCGTTATTTCCTAGGGGATACTCTAACCCCG
66 TACTCCAACCTCGTTATTTCCAAAGGGATACTCTAACCCCG
* * * * * *
7367043 TTATTTCCAAGGAGATACTCTAACCCCAATTTTATTTTCAAAATACCGATTTTCCATGATCGGGG
1 TTATTTCCAAGGAGATACTCCAA-CCCAATTTTATTTCCAAAACACCAATTTTCCATAATCGAGG
*
7367108 ATACTCCAACC-CTGTTATTTTCAAAGGGATACTC
65 ATACTCCAACCTC-GTTATTTCCAAAGGGATACTC
7367142 AAACTTTGGT
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
106 21 0.25
107 62 0.75
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (106 bp):
TTATTTCCAAGGAGATACTCCAACCCAATTTTATTTCCAAAACACCAATTTTCCATAATCGAGGA
TACTCCAACCTCGTTATTTCCAAAGGGATACTCTAACCCCG
Found at i:7367199 original size:185 final size:186
Alignment explanation
Indices: 7366887--7367228 Score: 438
Period size: 185 Copynumber: 1.8 Consensus size: 186
7366877 TCATTGATGT
* ** * *
7366887 TTTTATTTTTAAAATACCGATTTTTTACCATCAGAGATACTCCAACCTTATTATTTTCGAGGAGA
1 TTTTATTTTCAAAATACCGATTTTCCACCATCAGAGATACTCCAACCCTATTATTTTCAAGGAGA
* * *
7366952 TACTCCAACCCGATTTTATTTCCAAAACATCAATTTTTCATAATCGAGGATACTCCAACCTCGTT
66 TACTCAAACCCGATTTTATTTCCAAAACACCAATTTTCCATAATCGAGGATACTCCAACCTCGTT
*
7367017 ATTTCCT-AGGGGATACTCTAACCCCGTTATTTCCAAGGAGATACTCTAACCCCAA
131 ATTTCCTGAGGGGATACTCCAACCCCGTTATTTCCAAGGAGATACTCTAACCCCAA
** * * *
7367072 TTTTATTTTCAAAATACCGATTTTCCATGATCGGGGATACTCCAACCCTGTTATTTTCAAAGG-G
1 TTTTATTTTCAAAATACCGATTTTCCACCATCAGAGATACTCCAACCCTATTATTTTC-AAGGAG
** * * * *
7367136 ATACTCAAACTTTGGTTTTATTTCCAAAACACCGA-TTTCCATAATCGGGGATACTCTAACCTCG
65 ATACTCAAAC-CCGATTTTATTTCCAAAACACCAATTTTCCATAATCGAGGATACTCCAACCTCG
** *
7367200 TTATTTTTTGATGGGATACTCCAACCCCG
129 TTATTTCCTGAGGGGATACTCCAACCCCG
7367229 ATTTTATTTT
Statistics
Matches: 131, Mismatches: 23, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
185 92 0.70
186 39 0.30
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.35
Consensus pattern (186 bp):
TTTTATTTTCAAAATACCGATTTTCCACCATCAGAGATACTCCAACCCTATTATTTTCAAGGAGA
TACTCAAACCCGATTTTATTTCCAAAACACCAATTTTCCATAATCGAGGATACTCCAACCTCGTT
ATTTCCTGAGGGGATACTCCAACCCCGTTATTTCCAAGGAGATACTCTAACCCCAA
Found at i:7367206 original size:78 final size:79
Alignment explanation
Indices: 7367025--7367270 Score: 230
Period size: 79 Copynumber: 3.1 Consensus size: 79
7367015 TTATTTCCTA
* * * *
7367025 GGGGATACTCTAACCCCGTTA-TTTCCAAGGAGATACTCTAACCCCAATTTTATTTTCAAAATAC
1 GGGGATACTCTAA-CCCGTTATTTTCAAAGGAGATACTCAAACCCCAATTTTATTTCCAAAACAC
*
7367089 CGATTTTCCATGATC
65 CGATTTTCCATAATC
* *****
7367104 GGGGATACTCCAACCCTGTTATTTTCAAAGG-GATACTCAAACTTTGGTTTTATTTCCAAAACAC
1 GGGGATACTCTAACCC-GTTATTTTCAAAGGAGATACTCAAACCCCAATTTTATTTCCAAAACAC
7367168 CGA-TTTCCATAATC
65 CGATTTTCCATAATC
** * * * *
7367182 GGGGATACTCTAACCTCGTTATTTTTTGATGG-GATACTCCAACCCCGATTTTATTTTCAAAACA
1 GGGGATACTCTAACC-CGTTA-TTTTCAAAGGAGATACTCAAACCCCAATTTTATTTCCAAAACA
* * * *
7367246 TCAATTTTCCACAATT
64 CCGATTTTCCATAATC
*
7367262 AGGGATACT
1 GGGGATACT
7367271 TCAACCCCAT
Statistics
Matches: 136, Mismatches: 26, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
78 31 0.23
79 80 0.59
80 25 0.18
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (79 bp):
GGGGATACTCTAACCCGTTATTTTCAAAGGAGATACTCAAACCCCAATTTTATTTCCAAAACACC
GATTTTCCATAATC
Found at i:7369923 original size:13 final size:13
Alignment explanation
Indices: 7369905--7369929 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7369895 CATAAAGTGT
7369905 TGTATCGATACAA
1 TGTATCGATACAA
7369918 TGTATCGATACA
1 TGTATCGATACA
7369930 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:7370010 original size:13 final size:13
Alignment explanation
Indices: 7369992--7370016 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7369982 ATCACTTAAA
7369992 TGTATCGATACAT
1 TGTATCGATACAT
7370005 TGTATCGATACA
1 TGTATCGATACA
7370017 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7370069 original size:52 final size:52
Alignment explanation
Indices: 7370005--7370103 Score: 164
Period size: 52 Copynumber: 1.9 Consensus size: 52
7369995 ATCGATACAT
**
7370005 TGTATCGATACACTGA-TCTTTGTATCGATACATGCAGGCAAATTTTCCCAGA
1 TGTATCGATACACT-ATTCAATGTATCGATACATGCAGGCAAATTTTCCCAGA
7370057 TGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTTTC
1 TGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTTTC
7370104 ATATTTCGGG
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
51 1 0.02
52 43 0.98
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.33
Consensus pattern (52 bp):
TGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTTTCCCAGA
Found at i:7376068 original size:52 final size:52
Alignment explanation
Indices: 7375920--7376048 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
7375910 CAAAATATGA
*
7375920 AAATTTGCCTGCATGTATCGATACATTTCATAGTATATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
7375972 AAATTTGCCTGTATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* *
7376024 AAATTTACTTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
7376049 AAGATCAGTG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:7376144 original size:13 final size:13
Alignment explanation
Indices: 7376126--7376209 Score: 51
Period size: 13 Copynumber: 5.5 Consensus size: 13
7376116 AGCTTCGTAG
7376126 CGATACATTGTAT
1 CGATACATTGTAT
7376139 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
*
7376158 CGATACATTATAT
1 CGATACATTGTAT
7376171 CGATACAACACTTATGTAT
1 CGAT---ACA--T-TGTAT
7376190 CGATACATTGTAT
1 CGATACATTGTAT
7376203 CGATACA
1 CGATACA
7376210 AAATGTTGAA
Statistics
Matches: 57, Mismatches: 2, Indels: 24
0.69 0.02 0.29
Matches are distributed among these distances:
13 25 0.44
14 1 0.02
15 2 0.04
16 8 0.14
17 2 0.04
18 1 0.02
19 18 0.32
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:7376158 original size:19 final size:18
Alignment explanation
Indices: 7376134--7376196 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
7376124 AGCGATACAT
7376134 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
7376153 TGTATCGATAC--A-TTA
1 TGTATCGATACAAACTTA
7376168 --TATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
7376185 TGTATCGATACA
1 TGTATCGATACA
7376197 TTGTATCGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 9 0.24
15 3 0.08
16 2 0.05
17 3 0.08
19 21 0.55
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.33
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:7376172 original size:32 final size:32
Alignment explanation
Indices: 7376126--7376212 Score: 156
Period size: 32 Copynumber: 2.7 Consensus size: 32
7376116 AGCTTCGTAG
7376126 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
* *
7376158 CGATACATTATATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
7376190 CGATACATTGTATCGATACAAAA
1 CGATACATTGTATCGATACAAAA
7376213 TGTTGAAATT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 51 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.32
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:7376966 original size:55 final size:55
Alignment explanation
Indices: 7376907--7377078 Score: 208
Period size: 55 Copynumber: 3.2 Consensus size: 55
7376897 ATTAGGTTTA
7376907 AAGATGAGAAAAAGGATGTCAATGTGCTAATTCACGGTCAGCGACATTAGACTTG
1 AAGATGAGAAAAAGGATGTCAATGTGCTAATTCACGGTCAGCGACATTAGACTTG
* * * * * * ** *
7376962 AAGATGAG---AAGAATGCCAATGTGCTGATTCACGGCCAACGATATT-GGGTCTA
1 AAGATGAGAAAAAGGATGTCAATGTGCTAATTCACGGTCAGCGACATTAGACT-TG
* *
7377014 AAGATGAGAAAAAGGATGTCAATGTGCTAATTCACGATCAGCGACGTTAGACTTG
1 AAGATGAGAAAAAGGATGTCAATGTGCTAATTCACGGTCAGCGACATTAGACTTG
7377069 AAGATGAGAA
1 AAGATGAGAA
7377079 GAATGCCAAT
Statistics
Matches: 92, Mismatches: 20, Indels: 10
0.75 0.16 0.08
Matches are distributed among these distances:
51 2 0.02
52 40 0.43
55 48 0.52
56 2 0.02
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.23
Consensus pattern (55 bp):
AAGATGAGAAAAAGGATGTCAATGTGCTAATTCACGGTCAGCGACATTAGACTTG
Found at i:7377018 original size:52 final size:51
Alignment explanation
Indices: 7376877--7377836 Score: 744
Period size: 43 Copynumber: 19.6 Consensus size: 51
7376867 GGACCAATAC
* * * *
7376877 GCTGATTCACGGCCAACGATATTAGG-TTTAAAGATGAGAAAAAGGATGTCAATGT
1 GCTGATTCAAGGCCAGCGATATT-GGACTTAAAGATGAG---AAGG-TGCCAATGT
* * * * * * *
7376932 GCTAATTCACGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGCCAATGT
1 GCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAG-GTGCCAATGT
* * * *
7376984 GCTGATTCACGGCCAACGATATTGG-GTCTAAAGATGAGAAAAAGGATGTCAATGT
1 GCTGATTCAAGGCCAGCGATATTGGACT-TAAAGATGAG---AAGG-TGCCAATGT
* * ** ** * * *
7377039 GCTAATTCACGATCAGCGACGTTAGACTTGAAGATGAGAAGAATGCCAATGT
1 GCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAG-GTGCCAATGT
* * ** * * *
7377091 GCTGATTCAAGGCCAACGACATTGGGTTTTAAAAATGACGAAGGCGCCAATAT
1 GCTGATTCAAGGCCAGCGATATT-GGACTTAAAGATGA-GAAGGTGCCAATGT
*
7377144 GCTGATTCAAGGCCAGCGATACTGGACTTAAAGAT--GAAGGTGCCAATGT
1 GCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGCCAATGT
* * * * *
7377193 GCTGATTCAAGGCCAACGACATTGGACTTAAAGATGACAAAGGCGCCAATAT
1 GCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAGGTGCCAATGT
*
7377245 GCTGATTCAAGGCCAGCGATATTGGAC-T-----T-A-AAGGTGCCAATAT
1 GCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGCCAATGT
*
7377288 GCTGATTCAAGGCCAGCGATACTGGACTTAAAGAT--GAAGGTGCCAATGT
1 GCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGCCAATGT
* * * * *
7377337 GCTGATTCAAGGCCAACGACATTGGACTTAAAGATGACAAAGGCGCCAATAT
1 GCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAGGTGCCAATGT
7377389 GCTGATTCAAGGCCAGCGATATTGGAC-T-----T-A-AAGGTGCCAATGT
1 GCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGCCAATGT
* * * * * *
7377432 GCTGATTCAAGGCTAACGACATTGGACTTAAAAGATGACAAAGGCGCCAATAT
1 GCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATGA-GAAGGTGCCAATGT
7377485 GCTGATTCAAGGCCAGCGATATTGGAC-T-----T-A-AAGGTGCCAATGT
1 GCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGCCAATGT
* * * * *
7377528 ACTGATTCAAGGCCAACGACATTGGATTTAAAAGATGAG--GGTGCCAATAT
1 GCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATGAGAAGGTGCCAATGT
7377578 GCTGATTCAAGGCCAGCGATATTGGAC-T-----TG-G-AGGTGCCAATGT
1 GCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGCCAATGT
7377621 GCTGATTCAAGGCCAGCGATATTGGAC-T-----T-A-AAGGTGCCAATGT
1 GCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGCCAATGT
* * *
7377664 GCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-A-AAGATGCCAATAT
1 GCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGCCAATGT
*
7377713 GCTGATTCAAGGCCAGCGATATTGGAC-T-----T-A-AAGGTGCCAATAT
1 GCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGCCAATGT
* * * *
7377756 GCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT--GATGGTGCCAATAT
1 GCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGCCAATGT
* *
7377805 GCTGATTCAAGGCCAACGATATTGGGCTTAAA
1 GCTGATTCAAGGCCAGCGATATTGGACTTAAA
7377837 AGAAGATGCC
Statistics
Matches: 742, Mismatches: 104, Indels: 124
0.76 0.11 0.13
Matches are distributed among these distances:
42 1 0.00
43 225 0.30
44 5 0.01
45 3 0.00
46 3 0.00
48 1 0.00
49 170 0.23
50 35 0.05
51 5 0.01
52 150 0.20
53 71 0.10
54 5 0.01
55 67 0.09
56 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.24
Consensus pattern (51 bp):
GCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGTGCCAATGT
Found at i:7377056 original size:107 final size:107
Alignment explanation
Indices: 7376877--7377117 Score: 428
Period size: 107 Copynumber: 2.3 Consensus size: 107
7376867 GGACCAATAC
* *
7376877 GCTGATTCACGGCCAACGATATTAGGTTTAAAGATGAGAAAAAGGATGTCAATGTGCTAATTCAC
1 GCTGATTCACGGCCAACGATATTGGGTCTAAAGATGAGAAAAAGGATGTCAATGTGCTAATTCAC
*
7376942 GGTCAGCGACATTAGACTTGAAGATGAGAAGAATGCCAATGT
66 GATCAGCGACATTAGACTTGAAGATGAGAAGAATGCCAATGT
7376984 GCTGATTCACGGCCAACGATATTGGGTCTAAAGATGAGAAAAAGGATGTCAATGTGCTAATTCAC
1 GCTGATTCACGGCCAACGATATTGGGTCTAAAGATGAGAAAAAGGATGTCAATGTGCTAATTCAC
*
7377049 GATCAGCGACGTTAGACTTGAAGATGAGAAGAATGCCAATGT
66 GATCAGCGACATTAGACTTGAAGATGAGAAGAATGCCAATGT
* *
7377091 GCTGATTCAAGGCCAACGACATTGGGT
1 GCTGATTCACGGCCAACGATATTGGGT
7377118 TTTAAAAATG
Statistics
Matches: 128, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
107 128 1.00
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (107 bp):
GCTGATTCACGGCCAACGATATTGGGTCTAAAGATGAGAAAAAGGATGTCAATGTGCTAATTCAC
GATCAGCGACATTAGACTTGAAGATGAGAAGAATGCCAATGT
Found at i:7377196 original size:49 final size:49
Alignment explanation
Indices: 7377082--7377836 Score: 781
Period size: 43 Copynumber: 15.8 Consensus size: 49
7377072 ATGAGAAGAA
* * * ** *
7377082 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAAATGACGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATT-GGACTT--AAA-GATGAAGG
* *
7377135 CGCCAATATGCTGATTCAAGGCCAGCGATACTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * *
7377184 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGACAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG---AAGG
*
7377236 CGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
*
7377279 TGCCAATATGCTGATTCAAGGCCAGCGATACTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * *
7377328 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGACAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG---AAGG
*
7377380 CGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * *
7377423 TGCCAATGTGCTGATTCAAGGCTAACGACATTGGACTTAAAAGATGACAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATG---AAGG
*
7377476 CGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * * * *
7377519 TGCCAATGTACTGATTCAAGGCCAACGACATTGGATTTAAAAGATGAGGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATGAAGG
7377569 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G-AGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
*
7377612 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * *
7377655 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
7377704 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * *
7377747 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGATGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* *
7377796 TGCCAATATGCTGATTCAAGGCCAACGATATTGGGCTTAAA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
7377837 AGAAGATGCC
Statistics
Matches: 596, Mismatches: 63, Indels: 90
0.80 0.08 0.12
Matches are distributed among these distances:
43 231 0.39
44 1 0.00
45 1 0.00
46 1 0.00
47 3 0.01
48 5 0.01
49 171 0.29
50 39 0.07
52 80 0.13
53 64 0.11
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.24
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
Found at i:7377396 original size:144 final size:142
Alignment explanation
Indices: 7377131--7377836 Score: 791
Period size: 144 Copynumber: 5.0 Consensus size: 142
7377121 AAAAATGACG
* *
7377131 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATACTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
* *
7377196 GATTCAAGGCCAACGACATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAG
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATG--AAAGGTGCCAATATGCTGATTCAAGGCCAG
7377261 CGATATTGGACTTA
129 CGATATTGGACTTA
*
7377275 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATACTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
* *
7377340 GATTCAAGGCCAACGACATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAG
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATG--AAAGGTGCCAATATGCTGATTCAAGGCCAG
7377405 CGATATTGGACTTA
129 CGATATTGGACTTA
* * * * * *
7377419 AAGGTGCCAATGTGCTGATTCAAGGCTAACGACATTGGACTTAAAAGATGACAAAGGCGCCAATA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATG---AAGGTGCCAATG
* * *
7377484 TGCTGATTCAAGGCCAGCGATATTGGAC-T-----T-AAAGGTGCCAATGTACTGATTCAAGGCC
62 TGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAAGGTGCCAATATGCTGATTCAAGGCC
* * *
7377542 AACGACATTGGATTTAAAA
127 AGCGATATTGGACTT---A
7377561 GATGAGGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G-AGGTGCCAATG
1 -A--A-GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATG
* *
7377620 TGCTGATTCAAGGCCAGCGATATTGGAC-T-----T-AAAGGTGCCAATGTGCTGATTCAAGGCC
62 TGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAAGGTGCCAATATGCTGATTCAAGGCC
*
7377678 AGCTATATTGGACTTA
127 AGCGATATTGGACTTA
7377694 AAGATAAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAA
1 AAG-----G-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAA
* * *
7377753 TATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-ATGGTGCCAATATGCTGATTCAAGG
60 TGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAAGGTGCCAATATGCTGATTCAAGG
* *
7377817 CCAACGATATTGGGCTTA
125 CCAGCGATATTGGACTTA
7377835 AA
1 AA
7377837 AGAAGATGCC
Statistics
Matches: 501, Mismatches: 35, Indels: 55
0.85 0.06 0.09
Matches are distributed among these distances:
129 1 0.00
130 1 0.00
132 1 0.00
133 1 0.00
134 1 0.00
135 74 0.15
136 78 0.16
139 37 0.07
140 1 0.00
141 41 0.08
142 3 0.01
143 1 0.00
144 180 0.36
145 8 0.02
146 36 0.07
147 1 0.00
148 36 0.07
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.24
Consensus pattern (142 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
GATTCAAGGCCAGCGACATTGGACTTAAAGATGAAAGGTGCCAATATGCTGATTCAAGGCCAGCG
ATATTGGACTTA
Found at i:7377675 original size:21 final size:21
Alignment explanation
Indices: 7377609--7377675 Score: 50
Period size: 21 Copynumber: 3.1 Consensus size: 21
7377599 TTGGACTTGG
7377609 AGGTGCCAATGTGCTGATTCA
1 AGGTGCCAATGTGCTGATTCA
* * *
7377630 AGGCCAGCGATAT-TG--GACTTAA
1 AGG--TGCCA-ATGTGCTGA-TTCA
7377652 AGGTGCCAATGTGCTGATTCA
1 AGGTGCCAATGTGCTGATTCA
7377673 AGG
1 AGG
7377676 CCAGCTATAT
Statistics
Matches: 33, Mismatches: 6, Indels: 14
0.62 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 11 0.33
22 8 0.24
23 5 0.15
24 2 0.06
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (21 bp):
AGGTGCCAATGTGCTGATTCA
Found at i:7377742 original size:92 final size:91
Alignment explanation
Indices: 7377567--7377836 Score: 406
Period size: 92 Copynumber: 3.0 Consensus size: 91
7377557 AAAAGATGAG
* * *
7377567 GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--GAGGTGCCAATGTGCTGAT
1 GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAGGTGCCAATATGCTGAT
7377627 TCAAGGCCAGCGATATTGGACTTAAA
66 TCAAGGCCAGCGATATTGGACTTAAA
* *
7377653 GGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAAGATGCCAATATGCTGA
1 GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-AAGGTGCCAATATGCTGA
7377718 TTCAAGGCCAGCGATATTGGACTTAAA
65 TTCAAGGCCAGCGATATTGGACTTAAA
* *
7377745 GGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGATGGTGCCAATATGCTGA
1 GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-AAGGTGCCAATATGCTGA
* *
7377810 TTCAAGGCCAACGATATTGGGCTTAAA
65 TTCAAGGCCAGCGATATTGGACTTAAA
7377837 AGAAGATGCC
Statistics
Matches: 166, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
86 38 0.23
89 1 0.01
92 127 0.77
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (91 bp):
GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAGGTGCCAATATGCTGAT
TCAAGGCCAGCGATATTGGACTTAAA
Found at i:7377904 original size:32 final size:31
Alignment explanation
Indices: 7377827--7377914 Score: 104
Period size: 33 Copynumber: 2.7 Consensus size: 31
7377817 CCAACGATAT
*
7377827 TGGGCTTAAAAGAAGATGCCACCAACTTGTG
1 TGGGCTTTAAAGAAGATGCCACCAACTTGTG
* * *
7377858 TGGGCTTTTGAAGAAGGTTGCCACCGACTTGTG
1 TGGGC-TTTAAAGAA-GATGCCACCAACTTGTG
7377891 TGGGCTTTAAAGAAAAGATGCCAC
1 TGGGCTTTAAAG--AAGATGCCAC
7377915 TGAGTCGTGG
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
31 5 0.11
32 13 0.28
33 27 0.57
34 2 0.04
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (31 bp):
TGGGCTTTAAAGAAGATGCCACCAACTTGTG
Found at i:7377944 original size:30 final size:29
Alignment explanation
Indices: 7377902--7378172 Score: 238
Period size: 30 Copynumber: 9.0 Consensus size: 29
7377892 GGGCTTTAAA
*
7377902 GAAAAGATGCCACTGAGTCGTGGACTTTG
1 GAAAAAATGCCACTGAGTCGTGGACTTTG
**
7377931 GAAAGAAATGCCACTGAGTCGTACACTTTG
1 GAAA-AAATGCCACTGAGTCGTGGACTTTG
* * *
7377961 AAGAAAAGATGCCACTAAGTCATGGACTTTGG
1 --GAAAAAATGCCACTGAGTCGTGGACTTT-G
*
7377993 GACAAAATGCCACTGAGTCGTGGACTTTG
1 GAAAAAATGCCACTGAGTCGTGGACTTTG
* * *
7378022 AAGAAAAGATACCA-TGAGTCATGGACTTTGG
1 --GAAAAAATGCCACTGAGTCGTGGACTTT-G
* * * *
7378053 GACAGAATGCCGCTGAGTCGTGGGCTTTG
1 GAAAAAATGCCACTGAGTCGTGGACTTTG
* *
7378082 AGAAGAGATTGCCACTGAGTCGTGGACTTTAG
1 -GAA-AAAATGCCACTGAGTCGTGGACTTT-G
* * *
7378114 GACAAAATGCCACTGAGTCATGGGCTTTG
1 GAAAAAATGCCACTGAGTCGTGGACTTTG
* *
7378143 AGAAGAGATTGCCACTGAGTCGTGGACTTT
1 -GAA-AAAATGCCACTGAGTCGTGGACTTT
7378173 AAGAAGGTAT
Statistics
Matches: 192, Mismatches: 37, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
29 14 0.07
30 98 0.51
31 74 0.39
32 6 0.03
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.24
Consensus pattern (29 bp):
GAAAAAATGCCACTGAGTCGTGGACTTTG
Found at i:7377975 original size:61 final size:61
Alignment explanation
Indices: 7377890--7378172 Score: 358
Period size: 61 Copynumber: 4.7 Consensus size: 61
7377880 ACCGACTTGT
* * *
7377890 GTGGGCTTTAAAGAAAAGATGCCACTGAGTCGTGGACTTT-GGAAAGAAATGCCACTGAGTC
1 GTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGGGACA-AAATGCCACTGAGTC
** * *
7377951 GTACACTTTGAAGAAAAGATGCCACTAAGTCATGGACTTTGGGACAAAATGCCACTGAGTC
1 GTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGGGACAAAATGCCACTGAGTC
* * * *
7378012 GTGGACTTTGAAGAAAAGATACCA-TGAGTCATGGACTTTGGGACAGAATGCCGCTGAGTC
1 GTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGGGACAAAATGCCACTGAGTC
* * *
7378072 GTGGGCTTTG-AGAAGAGATTGCCACTGAGTCGTGGACTTTAGGACAAAATGCCACTGAGTC
1 GTGGACTTTGAAGAAAAGA-TGCCACTGAGTCGTGGACTTTGGGACAAAATGCCACTGAGTC
* * *
7378133 ATGGGCTTTG-AGAAGAGATTGCCACTGAGTCGTGGACTTT
1 GTGGACTTTGAAGAAAAGA-TGCCACTGAGTCGTGGACTTT
7378173 AAGAAGGTAT
Statistics
Matches: 198, Mismatches: 21, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
59 7 0.04
60 46 0.23
61 141 0.71
62 4 0.02
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (61 bp):
GTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGGGACAAAATGCCACTGAGTC
Found at i:7378062 original size:121 final size:122
Alignment explanation
Indices: 7377890--7378172 Score: 376
Period size: 121 Copynumber: 2.3 Consensus size: 122
7377880 ACCGACTTGT
*
7377890 GTGGGCTTTAAAGAAAAGATGCCACTGAGTCGTGGACTTTGGAAAGAAATGCCACTGAGTCGTAC
1 GTGGGCTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGGAAAGAAATGCCACTGAGTCGTAC
*
7377955 ACTTTGAAGAAAAGA-TGCCACTAAGTCATGGACTTTGGGACAAAATGCCACTGAGTC
66 ACTTTG-AGAAAAGATTGCCACTAAGTCATGGACTTTAGGACAAAATGCCACTGAGTC
* * * * * *
7378012 GTGGACTTTGAAGAAAAGATACCA-TGAGTCATGGACTTTGGGACAG-AATGCCGCTGAGTCGTG
1 GTGGGCTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTT-GGAAAGAAATGCCACTGAGTCGTA
** * * *
7378075 GGCTTTGAGAAGAGATTGCCACTGAGTCGTGGACTTTAGGACAAAATGCCACTGAGTC
65 CACTTTGAGAAAAGATTGCCACTAAGTCATGGACTTTAGGACAAAATGCCACTGAGTC
* *
7378133 ATGGGCTTTG-AGAAGAGATTGCCACTGAGTCGTGGACTTT
1 GTGGGCTTTGAAGAAAAGA-TGCCACTGAGTCGTGGACTTT
7378173 AAGAAGGTAT
Statistics
Matches: 139, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
120 14 0.10
121 85 0.61
122 40 0.29
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (122 bp):
GTGGGCTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGGAAAGAAATGCCACTGAGTCGTAC
ACTTTGAGAAAAGATTGCCACTAAGTCATGGACTTTAGGACAAAATGCCACTGAGTC
Found at i:7386429 original size:52 final size:52
Alignment explanation
Indices: 7386351--7386478 Score: 204
Period size: 52 Copynumber: 2.5 Consensus size: 52
7386341 CGAAATATGA
*
7386351 AAATTTGCCTGCATATATCGATACATTTCATAGTATATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTATATCGATACATCTGGGC
* *
7386403 AAATTTGCCTGTATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTATATCGATACATCTGGGC
* *
7386455 AAA-TTACTTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
7386479 AAGATCAGTG
Statistics
Matches: 70, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
51 18 0.26
52 52 0.74
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTATATCGATACATCTGGGC
Found at i:7386491 original size:51 final size:52
Alignment explanation
Indices: 7386351--7386496 Score: 170
Period size: 52 Copynumber: 2.8 Consensus size: 52
7386341 CGAAATATGA
* * ** *
7386351 AAATTTGCCTGCATATATCGATACATTTCATAGTATATCGATACATCTGGGC
1 AAATTTACCTGCATGTATCGATACATAACATAGTGTATCGATACATCTGGGC
* * **
7386403 AAATTTGCCTGTATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTACCTGCATGTATCGATACATAACATAGTGTATCGATACATCTGGGC
* *
7386455 AAA-TTACTTGCATGTATCGATACA-AAGATCAGTGTATCGATA
1 AAATTTACCTGCATGTATCGATACATAACAT-AGTGTATCGATA
7386497 TAATGTATCG
Statistics
Matches: 84, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
50 2 0.02
51 30 0.36
52 52 0.62
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (52 bp):
AAATTTACCTGCATGTATCGATACATAACATAGTGTATCGATACATCTGGGC
Found at i:7386553 original size:13 final size:13
Alignment explanation
Indices: 7386535--7386567 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
7386525 AGCTTCGTAG
7386535 CGATACATTGTAT
1 CGATACATTGTAT
7386548 CGATACATTGTAT
1 CGATACATTGTAT
7386561 CGATACA
1 CGATACA
7386568 AACCGTTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:7387352 original size:52 final size:52
Alignment explanation
Indices: 7387237--7388007 Score: 362
Period size: 49 Copynumber: 15.7 Consensus size: 52
7387227 GGACCAATAA
* * * * * *
7387237 GCTGATTCACGGCCAACGATATTACGTC-TAAAGATAAGAAAAAGGATGTCAATGT
1 GCTGATTCAAGGCCAACGACATTA-GACTTAAAGAT--G-AGAAGAATGCCAATGT
* * * * *
7387292 GCTAATTCATGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGCCAATGT
1 GCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAGAATGCCAATGT
* * ** * *
7387344 GCTGATTCACGGCCAACGATATT-GGGTCTAAAGATGAGAAAAAGGATGTCAATGT
1 GCTGATTCAAGGCCAACGACATTAGACT-TAAAGATGAG---AAGAATGCCAATGT
* * * *
7387399 GCTAATTCACGGTCAACGACATTAGACTTGAAGATGAGAAGAATGCCAATGT
1 GCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAGAATGCCAATGT
** * ** *
7387451 GCTGATTCAAGGCCAACGACATTGAGTTTTAAAAATGACGAAG-GCGCCAATAT
1 GCTGATTCAAGGCCAACGACATT-AGACTTAAAGATGA-GAAGAATGCCAATGT
* * * * * *
7387504 GCTGATTCAAGGCTAGCGATACTGGACTTAAAGAT--GAAG-GTGCCAATGT
1 GCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAGAATGCCAATGT
* * ** *
7387553 GCTGATTCAAGGCCAACGACATTGGACTTAAAGATGACAA-AGGCGCCAATAT
1 GCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAGA-ATGCCAATGT
* * *
7387605 GCTGATTCAAGGCCAGCGATATTGGACTT--A-A--AG--G--TGCCAATGT
1 GCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAGAATGCCAATGT
* * *
7387648 GTTGATTCAAGGCCAACGACATT-GAACTTAAAAGATGAG--G-GTGCCAATAT
1 GCTGATTCAAGGCCAACGACATTAG-ACTT-AAAGATGAGAAGAATGCCAATGT
* * *
7387698 GCTGATTCAAGGCCAGCGATATTGGACTT---G--GAG--G--TGCCAATGT
1 GCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAGAATGCCAATGT
* * * * *
7387741 GCTGATTCAAGGCTAGCTACATTGGACTTAAAGATGATG--G--TGCCAATAT
1 GCTGATTCAAGGCCAACGACATTAGACTTAAAGATGA-GAAGAATGCCAATGT
* * *
7387790 GCTGATTCAAGGCCAGCGATATTGGACTT--A-A--AG--G--TGCCAATGT
1 GCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAGAATGCCAATGT
* * * * *
7387833 GCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-A-AAG-ATGCCAATAT
1 GCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAGAATGCCAATGT
* * *
7387882 GCTGATTCAAGGCCAGCGATATTGGACTT--A-A--AG--G--TGCCAATGT
1 GCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAGAATGCCAATGT
* * * *
7387925 GCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGATG--G--TGCCAATAT
1 GCTGATTCAAGGCCAACGACATTAGACTTAAAGATGA-GAAGAATGCCAATGT
* * * *
7387974 GCTGATTCAAGGCCAGCGATATTGGGCTTAAAGA
1 GCTGATTCAAGGCCAACGACATTAGACTTAAAGA
7388008 AGATGCCACC
Statistics
Matches: 588, Mismatches: 86, Indels: 90
0.77 0.11 0.12
Matches are distributed among these distances:
42 1 0.00
43 138 0.23
44 6 0.01
45 3 0.01
46 7 0.01
47 5 0.01
48 4 0.01
49 160 0.27
50 33 0.06
51 5 0.01
52 115 0.20
53 37 0.06
54 6 0.01
55 66 0.11
56 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (52 bp):
GCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAGAAGAATGCCAATGT
Found at i:7387407 original size:55 final size:54
Alignment explanation
Indices: 7387241--7387469 Score: 209
Period size: 52 Copynumber: 4.3 Consensus size: 54
7387231 CAATAAGCTG
*
7387241 ATTCACGGCCAACGATATTACGTCTAAAGATAAGAAAAAGGATGTCAATGTGCTA
1 ATTCACGGCCAACGATATTA-GTCTAAAGATGAGAAAAAGGATGTCAATGTGCTA
* * * * * * * * *
7387296 ATTCATGGTCAGCGACATTAGACTTGAAGATGAG---AAGAATGCCAATGTGCTG
1 ATTCACGGCCAACGATATTAGTC-TAAAGATGAGAAAAAGGATGTCAATGTGCTA
*
7387348 ATTCACGGCCAACGATATTGGGTCTAAAGATGAGAAAAAGGATGTCAATGTGCTA
1 ATTCACGGCCAACGATATT-AGTCTAAAGATGAGAAAAAGGATGTCAATGTGCTA
* * * * * * *
7387403 ATTCACGGTCAACGACATTAGACTTGAAGATGAG---AAGAATGCCAATGTGCTG
1 ATTCACGGCCAACGATATTAGTC-TAAAGATGAGAAAAAGGATGTCAATGTGCTA
*
7387455 ATTCAAGGCCAACGA
1 ATTCACGGCCAACGA
7387470 CATTGAGTTT
Statistics
Matches: 138, Mismatches: 30, Indels: 15
0.75 0.16 0.08
Matches are distributed among these distances:
52 67 0.49
53 2 0.01
54 4 0.03
55 65 0.47
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
ATTCACGGCCAACGATATTAGTCTAAAGATGAGAAAAAGGATGTCAATGTGCTA
Found at i:7387419 original size:107 final size:107
Alignment explanation
Indices: 7387237--7387474 Score: 413
Period size: 107 Copynumber: 2.2 Consensus size: 107
7387227 GGACCAATAA
* *
7387237 GCTGATTCACGGCCAACGATATTACGTCTAAAGATAAGAAAAAGGATGTCAATGTGCTAATTCAT
1 GCTGATTCACGGCCAACGATATTGCGTCTAAAGATAAGAAAAAGGATGTCAATGTGCTAATTCAC
*
7387302 GGTCAGCGACATTAGACTTGAAGATGAGAAGAATGCCAATGT
66 GGTCAACGACATTAGACTTGAAGATGAGAAGAATGCCAATGT
* *
7387344 GCTGATTCACGGCCAACGATATTGGGTCTAAAGATGAGAAAAAGGATGTCAATGTGCTAATTCAC
1 GCTGATTCACGGCCAACGATATTGCGTCTAAAGATAAGAAAAAGGATGTCAATGTGCTAATTCAC
7387409 GGTCAACGACATTAGACTTGAAGATGAGAAGAATGCCAATGT
66 GGTCAACGACATTAGACTTGAAGATGAGAAGAATGCCAATGT
* *
7387451 GCTGATTCAAGGCCAACGACATTG
1 GCTGATTCACGGCCAACGATATTG
7387475 AGTTTTAAAA
Statistics
Matches: 124, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
107 124 1.00
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (107 bp):
GCTGATTCACGGCCAACGATATTGCGTCTAAAGATAAGAAAAAGGATGTCAATGTGCTAATTCAC
GGTCAACGACATTAGACTTGAAGATGAGAAGAATGCCAATGT
Found at i:7387556 original size:49 final size:49
Alignment explanation
Indices: 7387442--7388007 Score: 595
Period size: 49 Copynumber: 11.9 Consensus size: 49
7387432 ATGAGAAGAA
* * * ** *
7387442 TGCCAATGTGCTGATTCAAGGCCAACGACATTGAGTTTTAAAAATGACGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTG-GACTT--AAA-GATGAAGG
* * *
7387495 CGCCAATATGCTGATTCAAGGCTAGCGATACTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * *
7387544 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGACAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG---AAGG
*
7387596 CGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * * * *
7387639 TGCCAATGTGTTGATTCAAGGCCAACGACATTGAACTTAAAAGATGAGGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATGAAGG
7387689 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G-AGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * * *
7387732 TGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGATGATGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
7387781 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * *
7387824 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
7387873 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * *
7387916 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGATGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
*
7387965 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA
7388008 AGATGCCACC
Statistics
Matches: 429, Mismatches: 56, Indels: 60
0.79 0.10 0.11
Matches are distributed among these distances:
43 149 0.35
44 1 0.00
45 2 0.00
46 2 0.00
47 2 0.00
48 3 0.01
49 163 0.38
50 39 0.09
52 41 0.10
53 27 0.06
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
Found at i:7387654 original size:43 final size:43
Alignment explanation
Indices: 7387591--7388006 Score: 445
Period size: 43 Copynumber: 9.1 Consensus size: 43
7387581 TAAAGATGAC
*
7387591 AAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * *
7387634 AAAGGTGCCAATGTGTTGATTCAAGGCCAACGACATTGAACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
7387677 AAAAGATGAGGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 ---A-A--A-GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
** * * * *
7387727 GGAGGTGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
7387770 AAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 --A-A--A-GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* *
7387819 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
7387862 AAAGATAAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAG-----G-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
7387911 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
*
7387954 AAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
1 --A-A--A-GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
7388003 AAAG
1 AAAG
7388007 AAGATGCCAC
Statistics
Matches: 314, Mismatches: 34, Indels: 50
0.79 0.09 0.13
Matches are distributed among these distances:
43 151 0.48
44 4 0.01
45 1 0.00
46 4 0.01
47 3 0.01
48 3 0.01
49 113 0.36
50 35 0.11
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
Found at i:7387825 original size:92 final size:92
Alignment explanation
Indices: 7387442--7388006 Score: 779
Period size: 92 Copynumber: 6.0 Consensus size: 92
7387432 ATGAGAAGAA
** * *
7387442 TGCCAATGTGCTGATTCAAGGCCAACGACATTGAGTTTTAAAAATGACGAAGGCGCCAATATGCT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTG-GACTT--AAA-GATGAAGGTGCCAATATGCT
* *
7387507 GATTCAAGGCTAGCGATACTGGACTTAAAGATGAAGG
62 GATTCAAGGCCAGCGATATTGGACTT----A--AAGG
*
7387544 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGACAAAGGCGCCAATATGCTG
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATG---AAGGTGCCAATATGCTG
7387609 ATTCAAGGCCAGCGATATTGGACTTAAAGG
63 ATTCAAGGCCAGCGATATTGGACTTAAAGG
* * *
7387639 TGCCAATGTGTTGATTCAAGGCCAACGACATTGAACTTAAAAGATGAGGGTGCCAATATGCTGAT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTT-AAAGATGAAGGTGCCAATATGCTGAT
**
7387704 TCAAGGCCAGCGATATTGGACTTGGAGG
65 TCAAGGCCAGCGATATTGGACTTAAAGG
* * * *
7387732 TGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGATGATGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
7387797 CAAGGCCAGCGATATTGGACTTAAAGG
66 CAAGGCCAGCGATATTGGACTTAAAGG
* * * * *
7387824 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAAGATGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
7387889 CAAGGCCAGCGATATTGGACTTAAAGG
66 CAAGGCCAGCGATATTGGACTTAAAGG
* * *
7387916 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGATGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
*
7387981 CAAGGCCAGCGATATTGGGCTTAAAG
66 CAAGGCCAGCGATATTGGACTTAAAG
7388007 AAGATGCCAC
Statistics
Matches: 430, Mismatches: 29, Indels: 18
0.90 0.06 0.04
Matches are distributed among these distances:
92 224 0.52
93 76 0.18
95 40 0.09
96 7 0.02
97 1 0.00
98 3 0.01
99 3 0.01
101 43 0.10
102 33 0.08
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (92 bp):
TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
CAAGGCCAGCGATATTGGACTTAAAGG
Found at i:7388081 original size:33 final size:33
Alignment explanation
Indices: 7388007--7388082 Score: 109
Period size: 33 Copynumber: 2.3 Consensus size: 33
7387997 GGGCTTAAAG
7388007 AAGATGCCACCAACTTGTGTGGGCTTTTGAAGA
1 AAGATGCCACCAACTTGTGTGGGCTTTTGAAGA
* * *
7388040 AGGTTGCCACCGACTTGTGTGGGC-TTTGAAGAA
1 AAGATGCCACCAACTTGTGTGGGCTTTTGAAG-A
7388073 AAGATGCCAC
1 AAGATGCCAC
7388083 TGAGTCGTGG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 7 0.19
33 30 0.81
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (33 bp):
AAGATGCCACCAACTTGTGTGGGCTTTTGAAGA
Found at i:7388109 original size:30 final size:30
Alignment explanation
Indices: 7388070--7388280 Score: 211
Period size: 30 Copynumber: 7.0 Consensus size: 30
7388060 GGGCTTTGAA
7388070 GAAA-AGATGCCACTGAGTCGTGGACTTTG
1 GAAAGAGATGCCACTGAGTCGTGGACTTTG
**
7388099 GAAAGAGATGCCACTGAGTCGTACACTTTG
1 GAAAGAGATGCCACTGAGTCGTGGACTTTG
*
7388129 AAGAAA-AGATGCCACTAAGTCGTGGACTTTGG
1 --GAAAGAGATGCCACTGAGTCGTGGACTTT-G
* *
7388161 GACAGA-ATGCCACTGAGTCGTGGGCTTT-
1 GAAAGAGATGCCACTGAGTCGTGGACTTTG
*
7388189 GAGAAGAGATTGCCACTAAGTCGTGGACTTTAG
1 GA-AAGAGA-TGCCACTGAGTCGTGGACTTT-G
* *
7388222 GACAA-A-ATGCCACTGAGTCATGGGCTTT-
1 GA-AAGAGATGCCACTGAGTCGTGGACTTTG
*
7388250 GAGAAGAGATTGCCACTGAGTCATGGACTTT
1 GA-AAGAGA-TGCCACTGAGTCGTGGACTTT
7388281 AAGAAGGTAT
Statistics
Matches: 152, Mismatches: 17, Indels: 24
0.79 0.09 0.12
Matches are distributed among these distances:
28 6 0.04
29 8 0.05
30 66 0.43
31 62 0.41
32 6 0.04
33 4 0.03
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (30 bp):
GAAAGAGATGCCACTGAGTCGTGGACTTTG
Found at i:7388128 original size:61 final size:61
Alignment explanation
Indices: 7388058--7388281 Score: 285
Period size: 61 Copynumber: 3.7 Consensus size: 61
7388048 ACCGACTTGT
*
7388058 GTGGGCTTTGAAGAAAAGA-TGCCACTGAGTCGTGGACTTT-GGAAAGAGATGCCACTGAGTC
1 GTGGGCTTTG-AGAAAAGATTGCCACTAAGTCGTGGACTTTAGGAAAGA-ATGCCACTGAGTC
*** * *
7388119 GTACACTTTGAAGAAAAGA-TGCCACTAAGTCGTGGACTTTGGGACAGAATGCCACTGAGTC
1 GTGGGCTTTG-AGAAAAGATTGCCACTAAGTCGTGGACTTTAGGAAAGAATGCCACTGAGTC
*
7388180 GTGGGCTTTGAGAAGAGATTGCCACTAAGTCGTGGACTTTAGGACAA-AATGCCACTGAGTC
1 GTGGGCTTTGAGAAAAGATTGCCACTAAGTCGTGGACTTTAGGA-AAGAATGCCACTGAGTC
* * * *
7388241 ATGGGCTTTGAGAAGAGATTGCCACTGAGTCATGGACTTTA
1 GTGGGCTTTGAGAAAAGATTGCCACTAAGTCGTGGACTTTA
7388282 AGAAGGTATT
Statistics
Matches: 146, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
60 7 0.05
61 132 0.90
62 7 0.05
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (61 bp):
GTGGGCTTTGAGAAAAGATTGCCACTAAGTCGTGGACTTTAGGAAAGAATGCCACTGAGTC
Found at i:7388142 original size:31 final size:30
Alignment explanation
Indices: 7388058--7388285 Score: 230
Period size: 31 Copynumber: 7.5 Consensus size: 30
7388048 ACCGACTTGT
*
7388058 GTGGGCTTTGAAGAAAAGATGCCACTGAGTC
1 GTGGACTTTG-AGAAAAGATGCCACTGAGTC
7388089 GTGGACTTTG-GAAAGAGATGCCACTGAGTC
1 GTGGACTTTGAGAAA-AGATGCCACTGAGTC
** *
7388119 GTACACTTTGAAGAAAAGATGCCACTAAGTC
1 GTGGACTTTG-AGAAAAGATGCCACTGAGTC
* *
7388150 GTGGACTTTG-GGACAGAATGCCACTGAGTC
1 GTGGACTTTGAGAAAAG-ATGCCACTGAGTC
* * *
7388180 GTGGGCTTTGAGAAGAGATTGCCACTAAGTC
1 GTGGACTTTGAGAAAAGA-TGCCACTGAGTC
7388211 GTGGACTTT-AGGACAAA-ATGCCACTGAGTC
1 GTGGACTTTGA-GA-AAAGATGCCACTGAGTC
* * *
7388241 ATGGGCTTTGAGAAGAGATTGCCACTGAGTC
1 GTGGACTTTGAGAAAAGA-TGCCACTGAGTC
* *
7388272 ATGGACTTTAAGAA
1 GTGGACTTTGAGAA
7388286 GGTATTTGAA
Statistics
Matches: 165, Mismatches: 21, Indels: 22
0.79 0.10 0.11
Matches are distributed among these distances:
29 10 0.06
30 67 0.41
31 82 0.50
32 6 0.04
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (30 bp):
GTGGACTTTGAGAAAAGATGCCACTGAGTC
Found at i:7391295 original size:13 final size:13
Alignment explanation
Indices: 7391279--7391308 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
7391269 ATACATTGTT
7391279 CATTGTATCGATA
1 CATTGTATCGATA
7391292 CATTGTATCGATA
1 CATTGTATCGATA
7391305 CATT
1 CATT
7391309 TTGGGTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:7393194 original size:13 final size:13
Alignment explanation
Indices: 7393176--7393200 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7393166 TTCATTGTTC
7393176 ATTGTATCGATAT
1 ATTGTATCGATAT
7393189 ATTGTATCGATA
1 ATTGTATCGATA
7393201 CATTCTAGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (13 bp):
ATTGTATCGATAT
Found at i:7395654 original size:51 final size:50
Alignment explanation
Indices: 7395534--7395659 Score: 164
Period size: 50 Copynumber: 2.5 Consensus size: 50
7395524 AAATTTCTAG
* * **
7395534 ATTTTTCATCTCGGGGATACTCCAACCCAGGCTTTATTTCTAAAATATTT
1 ATTTTTCATCTCGGGGATACTCCAACCCAGGCTTTATTTCCAAAACATCA
* *
7395584 ATTTTTCATCTCGGGGATACTCTAACCCCA-GTTTTATTTCCAAAACATCA
1 ATTTTTCATCTCGGGGATACTCCAA-CCCAGGCTTTATTTCCAAAACATCA
*
7395634 ATTTTTCATAATCGGGGATACTCCAA
1 ATTTTTCAT-CTCGGGGATACTCCAA
7395660 TCTCATTATT
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
50 48 0.73
51 18 0.27
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (50 bp):
ATTTTTCATCTCGGGGATACTCCAACCCAGGCTTTATTTCCAAAACATCA
Found at i:7395732 original size:79 final size:78
Alignment explanation
Indices: 7395597--7395892 Score: 320
Period size: 79 Copynumber: 3.8 Consensus size: 78
7395587 TTTCATCTCG
* * * *
7395597 GGGATACTCTAACCCCAGTTTTATTTCCAAAACATCAATTTTTCATAATCGGGGATACTCCAATC
1 GGGATACTCCAACCCCAGTTTTATTTCTAAAACACCAATTTTTCATAATCGAGGATACTCCAA-C
*
7395662 TCATTATTTCTGAA
65 TCGTTATTTCTGAA
* *
7395676 GGGATACTCCAA-CCCTGATTTTATTTCTAAAACACCAATTTTTCACAATCGAGGATACTCCAAC
1 GGGATACTCCAACCCCAG-TTTTATTTCTAAAACACCAATTTTTCATAATCGAGGATACTCCAA-
7395740 CTCGTTATTTC-GAA
64 CTCGTTATTTCTGAA
*
7395754 -GGATACT-CAACCCCAGTTTTATTT-TCAAAACACCGATTTTTCATAATC-AGGATACTCCAAC
1 GGGATACTCCAACCCCAGTTTTATTTCT-AAAACACCAATTTTTCATAATCGAGGATACTCCAAC
*
7395815 CCTGTTATTT-TCGAA
65 TC-GTTATTTCT-GAA
** * * * * *
7395830 GGGATACTTTAA-CCCTGATTTTATTTCTAGAACACCGATTTTCCATAATCAGGGGATACTCCA
1 GGGATACTCCAACCCCAG-TTTTATTTCTAAAACACCAATTTTTCATAATC-GAGGATACTCCA
7395893 GCCCCGTTGT
Statistics
Matches: 188, Mismatches: 17, Indels: 23
0.82 0.07 0.10
Matches are distributed among these distances:
74 2 0.01
75 20 0.11
76 34 0.18
77 22 0.12
78 37 0.20
79 63 0.34
80 10 0.05
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (78 bp):
GGGATACTCCAACCCCAGTTTTATTTCTAAAACACCAATTTTTCATAATCGAGGATACTCCAACT
CGTTATTTCTGAA
Found at i:7398514 original size:19 final size:18
Alignment explanation
Indices: 7398486--7398548 Score: 55
Period size: 19 Copynumber: 3.7 Consensus size: 18
7398476 AAACTGTAAC
7398486 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
*
7398505 TGTATTGATAC--AA---
1 TGTATCGATACATAAGTT
7398518 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
*
7398537 TGTATTGATACA
1 TGTATCGATACA
7398549 ATGTATCGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 12
0.70 0.06 0.24
Matches are distributed among these distances:
13 10 0.29
15 2 0.06
17 2 0.06
19 21 0.60
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Done.