Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold64
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7997333
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 95991 characters in sequence are not A, C, G, or T
File 44 of 45
Found at i:7777951 original size:82 final size:80
Alignment explanation
Indices: 7777794--7777952 Score: 176
Period size: 82 Copynumber: 2.0 Consensus size: 80
7777784 CTCTCCAAGG
* * *
7777794 AGATACTCTAACCCTATTTTTCTTAAAAAACAATTGAATTTACATTCATGATGATACTCTAACCC
1 AGATACTCCAACCCTATTTTTCTTAAAAAACAATTGAATTTACATTCATGAGGATACTCCAACCC
*
7777859 CATATTTCAAAAAAA
66 CATATCTCAAAAAAA
* * * * * *
7777874 AGATACTCCAACCTTTTTTTTCTTACAAGAAA-ACCTTGAATTTATATTCTTGGGGATACTCCAA
1 AGATACTCCAACCCTATTTTTCTTA-AA-AAACA-ATTGAATTTACATTCATGAGGATACTCCAA
* *
7777938 CCCTATCTCTCAAAA
63 CCCCATATCTCAAAA
7777953 GAGGATACTT
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
80 22 0.34
81 3 0.05
82 39 0.61
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.35
Consensus pattern (80 bp):
AGATACTCCAACCCTATTTTTCTTAAAAAACAATTGAATTTACATTCATGAGGATACTCCAACCC
CATATCTCAAAAAAA
Found at i:7779637 original size:24 final size:24
Alignment explanation
Indices: 7779610--7779659 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
7779600 AGGTTTCAAT
7779610 GTGTCAATCCTTTGTAA-GAGGAAG
1 GTGTCAATCCTTTGTAAGGA-GAAG
* *
7779634 GTGTCGATTCTTTGTAAGGAGAAG
1 GTGTCAATCCTTTGTAAGGAGAAG
7779658 GT
1 GT
7779660 TTTCAAAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 21 0.91
25 2 0.09
ACGTcount: A:0.26, C:0.10, G:0.32, T:0.32
Consensus pattern (24 bp):
GTGTCAATCCTTTGTAAGGAGAAG
Found at i:7780427 original size:77 final size:77
Alignment explanation
Indices: 7780300--7780455 Score: 312
Period size: 77 Copynumber: 2.0 Consensus size: 77
7780290 ACCATAAATG
7780300 AACAAATCTCAATATGTGACAAATCTCACTTAGCTTGAAAAGATTGGTGGTGACTCTCAATTTAC
1 AACAAATCTCAATATGTGACAAATCTCACTTAGCTTGAAAAGATTGGTGGTGACTCTCAATTTAC
7780365 CAACTATTTTGT
66 CAACTATTTTGT
7780377 AACAAATCTCAATATGTGACAAATCTCACTTAGCTTGAAAAGATTGGTGGTGACTCTCAATTTAC
1 AACAAATCTCAATATGTGACAAATCTCACTTAGCTTGAAAAGATTGGTGGTGACTCTCAATTTAC
7780442 CAACTATTTTGT
66 CAACTATTTTGT
7780454 AA
1 AA
7780456 TGGCCATACG
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 79 1.00
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (77 bp):
AACAAATCTCAATATGTGACAAATCTCACTTAGCTTGAAAAGATTGGTGGTGACTCTCAATTTAC
CAACTATTTTGT
Found at i:7782396 original size:78 final size:76
Alignment explanation
Indices: 7782246--7782406 Score: 193
Period size: 78 Copynumber: 2.1 Consensus size: 76
7782236 GTGATCTTCT
* * *
7782246 TTAAGGTGTGAAAAACGTTTGGGAGATGTATTAACATCTTCTCTCATTTGTATGCTCTGGTCCCT
1 TTAAGGTGTGAAAAACGTTTGGAAGATGTATTAACATCTTCTCTCATTTGTATGCTCTGATCCCG
**
7782311 ATTTGATTATC
66 ACATGATTATC
* *
7782322 TTCAAGGTGTGAAACATGTTTAGGAAG-TGTATTTAACATCTTCTCTCATTTGTGA-GCTC-GAT
1 TT-AAGGTGTGAAAAACGTTT-GGAAGATGTA-TTAACATCTTCTCTCATTTGT-ATGCTCTGAT
7782384 CCTCGACATGATTATC
62 CC-CGACATGATTATC
7782400 TTAAGGT
1 TTAAGGT
7782407 AAAACATGTA
Statistics
Matches: 73, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
76 2 0.03
77 29 0.40
78 41 0.56
79 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (76 bp):
TTAAGGTGTGAAAAACGTTTGGAAGATGTATTAACATCTTCTCTCATTTGTATGCTCTGATCCCG
ACATGATTATC
Found at i:7784947 original size:98 final size:98
Alignment explanation
Indices: 7784754--7784934 Score: 256
Period size: 98 Copynumber: 1.8 Consensus size: 98
7784744 TTGGAAGATG
* * * *
7784754 TCATTTGTGGGCATTCTAAGGTAAATCGTTAACATGTGGGCTCATCCCTCCCTCATAAAGTCCTT
1 TCATTTGTAGGCATTCTAAGGTAAACCATTAACATGTGAGCTCATCCCTCCCTCATAAAGTCCTT
7784819 CGCTAAACATTTGTTTTTGTCATATTCTATGAT
66 CGCTAAACATTTGTTTTTGTCATATTCTATGAT
* * * *
7784852 TCATTTGTAGGCATTCTAAGGTAAACCATTAACTTGTGAGCTCATTCTTCCCAT-ATCAAGTCCT
1 TCATTTGTAGGCATTCTAAGGTAAACCATTAACATGTGAGCTCATCCCTCCC-TCATAAAGTCCT
* *
7784916 TTGCTAAACGTTTGTTTTT
65 TCGCTAAACATTTGTTTTT
7784935 TTTGTCTTCT
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
98 71 0.99
99 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (98 bp):
TCATTTGTAGGCATTCTAAGGTAAACCATTAACATGTGAGCTCATCCCTCCCTCATAAAGTCCTT
CGCTAAACATTTGTTTTTGTCATATTCTATGAT
Found at i:7786276 original size:29 final size:29
Alignment explanation
Indices: 7786234--7786302 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
7786224 TTTGACAAAG
7786234 GTACTTTG-GTATAA-ATACTTTTAGCACAA
1 GTACTTTGAG-ATAAGA-ACTTTTAGCACAA
* *
7786263 GTACTTTGAGATAAGAACTTTTGGCATAA
1 GTACTTTGAGATAAGAACTTTTAGCACAA
*
7786292 GTGCTTTGAGA
1 GTACTTTGAGA
7786303 CAAGTACTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 33 0.94
30 2 0.06
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (29 bp):
GTACTTTGAGATAAGAACTTTTAGCACAA
Found at i:7790699 original size:191 final size:191
Alignment explanation
Indices: 7790375--7790757 Score: 748
Period size: 191 Copynumber: 2.0 Consensus size: 191
7790365 AGTTCCAAAG
*
7790375 AGGAAATAGTGACTTTAAAAGCAGCTAAAGCAAAAAGAAGACTATGATTGCACTAATACAGCAAT
1 AGGAAATAGTGACTTTAAAAGCAGCCAAAGCAAAAAGAAGACTATGATTGCACTAATACAGCAAT
7790440 ATGTATCAACCAAAGTGATTAAGCAGAAGATCACCAATTCATAGCAACTCATAGAGAAGAAAAAT
66 ATGTATCAACCAAAGTGATTAAGCAGAAGATCACCAATTCATAGCAACTCATAGAGAAGAAAAAT
7790505 GGCCTACGTACAAACACATAACTCTATCTACTATAAACATTTGCATCTATGCTCGTTATAT
131 GGCCTACGTACAAACACATAACTCTATCTACTATAAACATTTGCATCTATGCTCGTTATAT
7790566 AGGAAATAGTGACTTTAAAAGCAGCCAAAGCAAAAAGAAGACTATGATTGCACTAATACAGCAAT
1 AGGAAATAGTGACTTTAAAAGCAGCCAAAGCAAAAAGAAGACTATGATTGCACTAATACAGCAAT
*
7790631 ATGTATCAACCAAAGTGATTAAGCAGAAGATCGCCAATTCATAGCAACTCATAGAGAAGAAAAAT
66 ATGTATCAACCAAAGTGATTAAGCAGAAGATCACCAATTCATAGCAACTCATAGAGAAGAAAAAT
7790696 GGCCTACGTACAAACACATAACTCTATCTACTATAAACATTTGCATCTATGCTCGTTATAT
131 GGCCTACGTACAAACACATAACTCTATCTACTATAAACATTTGCATCTATGCTCGTTATAT
7790757 A
1 A
7790758 TCTTGATACC
Statistics
Matches: 190, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
191 190 1.00
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.24
Consensus pattern (191 bp):
AGGAAATAGTGACTTTAAAAGCAGCCAAAGCAAAAAGAAGACTATGATTGCACTAATACAGCAAT
ATGTATCAACCAAAGTGATTAAGCAGAAGATCACCAATTCATAGCAACTCATAGAGAAGAAAAAT
GGCCTACGTACAAACACATAACTCTATCTACTATAAACATTTGCATCTATGCTCGTTATAT
Found at i:7810385 original size:12 final size:13
Alignment explanation
Indices: 7810359--7810391 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
7810349 TATCACTAAA
7810359 ATTTA-AATTTCT
1 ATTTATAATTTCT
7810371 ATTTATAATTT-T
1 ATTTATAATTTCT
7810383 ATTTATAAT
1 ATTTATAAT
7810392 ACTACCTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 15 0.75
13 5 0.25
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (13 bp):
ATTTATAATTTCT
Found at i:7810569 original size:35 final size:34
Alignment explanation
Indices: 7810529--7810614 Score: 88
Period size: 35 Copynumber: 2.5 Consensus size: 34
7810519 CTATTGATTT
*
7810529 AATATAATTTGTTAA-ATAAATTTATT-TAATTAATA
1 AATAT-ATTT-TTAATAAAAATTT-TTATAATTAATA
*
7810564 AATATATTTTTAATAAAAATTTTTAATAATTAATT
1 AATATATTTTTAATAAAAATTTTT-ATAATTAATA
*
7810599 AATATGTTTTT-ATAAA
1 AATATATTTTTAATAAA
7810615 TATAGAGTTA
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
33 6 0.13
34 16 0.36
35 23 0.51
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (34 bp):
AATATATTTTTAATAAAAATTTTTATAATTAATA
Found at i:7810587 original size:13 final size:15
Alignment explanation
Indices: 7810529--7810592 Score: 60
Period size: 17 Copynumber: 4.1 Consensus size: 15
7810519 CTATTGATTT
7810529 AATATAATTTGTTAAATA
1 AATAT-ATTT-TT-AATA
*
7810547 AATTTATTTAATTAATA
1 AATATATTT--TTAATA
7810564 AATATATTTTTAATA
1 AATATATTTTTAATA
7810579 AA-A-ATTTTTAATA
1 AATATATTTTTAATA
7810592 A
1 A
7810593 TTAATTAATA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
15 8 0.19
17 16 0.38
18 6 0.14
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (15 bp):
AATATATTTTTAATA
Found at i:7812228 original size:2 final size:2
Alignment explanation
Indices: 7812221--7812251 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7812211 TCAATAATAC
7812221 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7812252 AGGAAAAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7812318 original size:14 final size:14
Alignment explanation
Indices: 7812299--7812358 Score: 77
Period size: 14 Copynumber: 4.3 Consensus size: 14
7812289 TAATTTTTTT
7812299 TATTTTTTAATATA
1 TATTTTTTAATATA
* *
7812313 TATTTTTTCATAAA
1 TATTTTTTAATATA
*
7812327 TATTTTTTAAAATA
1 TATTTTTTAATATA
7812341 TATTTTTTCAAT-TA
1 TATTTTTT-AATATA
7812355 TATT
1 TATT
7812359 GAGAAATCGT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
14 37 0.95
15 2 0.05
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (14 bp):
TATTTTTTAATATA
Found at i:7812683 original size:39 final size:39
Alignment explanation
Indices: 7812606--7812689 Score: 96
Period size: 39 Copynumber: 2.1 Consensus size: 39
7812596 AGGGTTAAAC
* * *
7812606 TGAAATCTAAAACATATGATTAATATATTAATTTTTTAT
1 TGAAATCTAAAACATATCAATAATATATTAATTATTTAT
* * * *
7812645 TGAAATCTGAAAGATATCAATAATGTATTGATTATTTAT
1 TGAAATCTAAAACATATCAATAATATATTAATTATTTAT
7812684 TAGAAA
1 T-GAAA
7812690 ATAAAAGATA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
39 33 0.89
40 4 0.11
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.42
Consensus pattern (39 bp):
TGAAATCTAAAACATATCAATAATATATTAATTATTTAT
Found at i:7813021 original size:67 final size:67
Alignment explanation
Indices: 7812947--7813084 Score: 208
Period size: 67 Copynumber: 2.1 Consensus size: 67
7812937 ATGATTAATG
* *
7812947 TATAGATTCTTGATGGGAATCAGATTCCTTCTAATATGAAAGGAA-TTGATAAGACTAATGCAT-
1 TATAGATTCTTGATGGGAATCAAATTCCTTATAATATGAAA-GAAGTTGATAAGACTAATGCATA
7813010 GAT
65 GAT
* *
7813013 ATATAGATTCTTGATGGGAATCAAATTCTTTATGATATGAAAGAAGTTGATAAGACTAATGCATA
1 -TATAGATTCTTGATGGGAATCAAATTCCTTATAATATGAAAGAAGTTGATAAGACTAATGCATA
7813078 GAT
65 GAT
7813081 TATA
1 TATA
7813085 AATGTCAGAT
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
66 3 0.05
67 59 0.91
68 3 0.05
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (67 bp):
TATAGATTCTTGATGGGAATCAAATTCCTTATAATATGAAAGAAGTTGATAAGACTAATGCATAG
AT
Found at i:7816669 original size:73 final size:72
Alignment explanation
Indices: 7816538--7817786 Score: 793
Period size: 73 Copynumber: 17.5 Consensus size: 72
7816528 ATTACAATAT
* * ** * * *
7816538 AAATTTAAACTCCTACAAATTGAAATAAATTATAGCTTAAAAAATTTAAACTCATATAATCATAT
1 AAATTTAAATTTCTACAAATAAAAATAAATTATA-CTTTAAAAATTTAAACTCGTATAATCA-AA
*
7816603 CTAGAAAAC
64 CCAGAAAAC
* * * * *
7816612 AAATTTAAATTTTTATAAATAAAAATAAA-AATACTTTAAAAAATTTAAACTCGTATAATCAGAT
1 AAATTTAAATTTCTACAAATAAAAATAAATTATACTTT-AAAAATTTAAACTCGTATAATCAAAC
* *
7816676 CAAAAAAT
65 CAGAAAAC
* ** * * * * *
7816684 AAACTTAAAGGTCTATAAACAAAAATAAATCATA-TATTAAAAATTTAAACTCGTATAATTACAC
1 AAATTTAAATTTCTACAAATAAAAATAAATTATACT-TTAAAAATTTAAACTCGTATAATCA-AA
*
7816748 CCA-AAAAA
64 CCAGAAAAC
** * * ** * * *
7816756 ATAACTTTGTATTTTTACAAATAGAAATAAATTATACCCTAAAAATTTAAACTTGTATATTAAAA
1 A-AA-TTTAAATTTCTACAAATAAAAATAAATTATACTTTAAAAATTTAAACTCGTATAATCAAA
7816821 CCA-AGAAAC
64 CCAGA-AAAC
* * **
7816830 AAATTTAAACTTCTACAAATAAAAATAAATTATAATTCTAAAAATTTAAACTTTTATAATCAAAC
1 AAATTTAAATTTCTACAAATAAAAATAAATTATACTT-TAAAAATTTAAACTCGTATAATCAAAC
7816895 C------C
65 CAGAAAAC
* *
7816897 -AA---AAA--TCTACAAATAAAGATAAATAATATC-TTAAAAATTTAAACTCGT-TAAATC--A
1 AAATTTAAATTTCTACAAATAAAAATAAATTATA-CTTTAAAAATTTAAACTCGTAT-AATCAAA
* *
7816952 -TA-TAAA-
64 CCAGAAAAC
* * *
7816958 AAATTT-AATTTCTAAAAATAAAAATAAATAATACCTTAAAAATTTAAACTCGTATAATCAAACT
1 AAATTTAAATTTCTACAAATAAAAATAAATTATACTTTAAAAATTTAAACTCGTATAATCAAAC-
* *
7817022 AAAAAAAC
65 CAGAAAAC
* * * * ** * *
7817030 AAAATTAATTTTCTACAAATAAAAATAAATTATACTTTCAAAATTTTAAATTTATATAATTATAT
1 AAATTTAAATTTCTACAAATAAAAATAAATTATACTTT-AAAAATTTAAACTCGTATAATCA-AA
* *
7817095 CCAAAAAAT
64 CCAGAAAAC
** * * * * *
7817104 GTATTTAAACTTCTACAAATAAAAATAAATTATACTTTAAAAATTTAAATTCATATATTCATACC
1 AAATTTAAATTTCTACAAATAAAAATAAATTATACTTTAAAAATTTAAACTCGTATAATCA-AAC
*
7817169 CAAAAAAC
65 CAGAAAAC
* * * * * * **
7817177 AAATTAAAACTTCTACAAGTAAATATAAA-TATTACCTTAAAAATTTAAATTTATATAATCAAAC
1 AAATTTAAATTTCTACAAATAAAAATAAATTA-TACTTTAAAAATTTAAACTCGTATAATCAAAC
* *
7817241 CAAAAAAT
65 CAGAAAAC
* * * * * *
7817249 AAATTTAAACTTCTAAAAATAAATATAAATTATACCTTCAAAAATTTAAACTCCTATAATCATAC
1 AAATTTAAATTTCTACAAATAAAAATAAATTATA-CTTTAAAAATTTAAACTCGTATAATCA-AA
* *
7817314 CCAAAAAAT
64 CCAGAAAAC
* * * *
7817323 AAATTTAAACTTT-TACAAGTAAAAATAATTTATAC-TTAAAAATTTAAACTTGTATAATCATAC
1 AAATTTAAA-TTTCTACAAATAAAAATAAATTATACTTTAAAAATTTAAACTCGTATAATCA-AA
*
7817386 CCA-ACAA-
64 CCAGAAAAC
* * * ** *
7817393 AAATTTAAAAAATTCTAAAAAT-AAAATCAAATTACACCCTAAAAATTTAAACTTGTATAATC-A
1 AAATTT--AAATTTCTACAAATAAAAAT-AAATTATACTTTAAAAATTTAAACTCGTATAATCAA
***
7817456 A-CA-AATTT
63 ACCAGAAAAC
* * * * *
7817464 AAATTTAAACTTCTATAAATAAAAAT--ATTATACCTTTAAAAATTTAAACTCATATAATTATAC
1 AAATTTAAATTTCTACAAATAAAAATAAATTATA-CTTTAAAAATTTAAACTCGTATAATCAAAC
7817527 CTA-AAAGAC
65 C-AGAAA-AC
* * * * * *
7817536 AAATTTAAACTTATACAAATAGAAATAAATTATAGCTTAAAAAATTTAAACTTGTATAAGT-ATA
1 AAATTTAAATTTCTACAAATAAAAATAAATTATA-CTTTAAAAATTTAAACTCGTATAA-TCAAA
7817600 CTCA-AAAAC
64 C-CAGAAAAC
* * * *
7817609 AAATTTAAACTTCTACGAATAAAGATAAA-TAGTA-TCTTAAAAATTTAAACTCGTATAATCATA
1 AAATTTAAATTTCTACAAATAAAAATAAATTA-TACT-TTAAAAATTTAAACTCGTATAATCAAA
* *
7817672 CTCAAAAAAT
64 C-CAGAAAAC
* * * * * * *
7817682 AAATTTAAACTTCTACAAATATAGATAAATAATACTTAAAAAATTTAAACTCGTACAATCGAA-C
1 AAATTTAAATTTCTACAAATAAAAATAAATTATACTTTAAAAATTTAAACTCGTATAATCAAACC
7817746 A-AAAAGC
66 AGAAAA-C
* *
7817753 AAATTTAAACTTT-TATAAATAAAACTAAATTATA
1 AAATTTAAA-TTTCTACAAATAAAAATAAATTATA
7817787 TTAACCATAC
Statistics
Matches: 947, Mismatches: 166, Indels: 127
0.76 0.13 0.10
Matches are distributed among these distances:
58 1 0.00
59 1 0.00
60 19 0.02
61 22 0.02
62 2 0.00
63 3 0.00
64 2 0.00
65 1 0.00
66 45 0.05
67 7 0.01
68 22 0.02
69 13 0.01
70 20 0.02
71 52 0.05
72 227 0.24
73 305 0.32
74 199 0.21
75 6 0.01
ACGTcount: A:0.53, C:0.12, G:0.03, T:0.32
Consensus pattern (72 bp):
AAATTTAAATTTCTACAAATAAAAATAAATTATACTTTAAAAATTTAAACTCGTATAATCAAACC
AGAAAAC
Found at i:7816712 original size:72 final size:74
Alignment explanation
Indices: 7816560--7816742 Score: 212
Period size: 72 Copynumber: 2.5 Consensus size: 74
7816550 CTACAAATTG
* ** * * * * ** *
7816560 AAATAAATTATAGCTTAAAAAATTTAAACTCATATAATCATATCTAGAAAACAAATTTAAATTTT
1 AAATAAATAATATATTAAAAAATTTAAACTCGTATAATCAGATCTAAAAAACAAACTTAAAGGTC
*
7816625 TATAAATAA
66 TATAAACAA
*
7816634 AAATAAA-AATACT-TTAAAAAATTTAAACTCGTATAATCAGATC-AAAAAATAAACTTAAAGGT
1 AAATAAATAATA-TATTAAAAAATTTAAACTCGTATAATCAGATCTAAAAAACAAACTTAAAGGT
7816696 CTATAAACAA
65 CTATAAACAA
*
7816706 AAATAAATCATATATT-AAAAATTTAAACTCGTATAAT
1 AAATAAATAATATATTAAAAAATTTAAACTCGTATAAT
7816743 TACACCCAAA
Statistics
Matches: 94, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
72 51 0.54
73 36 0.38
74 7 0.07
ACGTcount: A:0.55, C:0.09, G:0.04, T:0.32
Consensus pattern (74 bp):
AAATAAATAATATATTAAAAAATTTAAACTCGTATAATCAGATCTAAAAAACAAACTTAAAGGTC
TATAAACAA
Found at i:7816951 original size:60 final size:63
Alignment explanation
Indices: 7816840--7817026 Score: 190
Period size: 66 Copynumber: 3.0 Consensus size: 63
7816830 AAATTTAAAC
* * **
7816840 TTCTACAAATAAAAATAAATTATAAT-TCTAAAAATTTAAACT-TTTATAATCAAACCCAAA-AA
1 TTCTACAAATAAAAATAAATAAT-ATCT-TAAAAATTTAAACTCGTTATAATCAAACAAAAATAA
*
7816902 -TCTACAAATAAAGATAAATAATATCTTAAAAATTTAAACTCGTTA-AATCATATA-AAAAATTT
1 TTCTACAAATAAAAATAAATAATATCTTAAAAATTTAAACTCGTTATAATCA-A-ACAAAAA--T
7816964 AA
62 AA
* *
7816966 TTTCTAAAAATAAAAATAAATAATACCTTAAAAATTTAAACTCG-TATAATCAAACTAAAAA
1 -TTCTACAAATAAAAATAAATAATATCTTAAAAATTTAAACTCGTTATAATCAAAC-AAAAA
7817027 AACAAAATTA
Statistics
Matches: 105, Mismatches: 8, Indels: 20
0.79 0.06 0.15
Matches are distributed among these distances:
60 21 0.20
61 28 0.27
62 1 0.01
64 3 0.03
65 3 0.03
66 49 0.47
ACGTcount: A:0.56, C:0.11, G:0.02, T:0.32
Consensus pattern (63 bp):
TTCTACAAATAAAAATAAATAATATCTTAAAAATTTAAACTCGTTATAATCAAACAAAAATAA
Found at i:7817103 original size:346 final size:346
Alignment explanation
Indices: 7816612--7817248 Score: 797
Period size: 346 Copynumber: 1.8 Consensus size: 346
7816602 TCTAGAAAAC
* * * * *
7816612 AAATTTAAATTTTTATAAATAAAAATAAAAATACTTTAAAAAATTTAAACTCGTATAATCAGATC
1 AAATTTAAATTTCTAAAAATAAAAATAAAAATACCTTAAAAAATTTAAACTCGTATAATCAAATA
* * * *
7816677 AAAAAATAAACTTAAAGGTCTATAAACAAAAATAAATCATATATTAAAAATTTAAACTCGTATAA
66 AAAAAACAAAATTAAAGGTCTACAAACAAAAATAAATCATATATTAAAAATTTAAACTCATATAA
** * * *
7816742 TTACACCCAAAAAAAT-AACTTTGTATTTTTACAAATAGAAATAAATTATACCCTAAAAATTTAA
131 TTACACCCAAAAAAATGAA-TTTAAACTTCTACAAATAAAAATAAATTATACCCTAAAAATTTAA
* * * *
7816806 ACTT-GTATATT-AAAACCAAGAAACAAATTTAAACTTCTACAAATAAAAATAAATTATAA-TTC
195 A-TTCATATATTCAAAACCAAAAAACAAATTAAAACTTCTACAAATAAAAATAAA-TATAACCT-
*
7816868 TAAAAATTTAAACTTT-TATAATCAAACCCAAAAATCTACAAATAAAGATAAATAATATCTTAAA
257 TAAAAATTTAAA-TTTATATAATCAAACCAAAAAATCTACAAATAAAGATAAATAATATCTTAAA
7816932 AATTTAAACTCGTTAAATCATATAAA
321 AATTTAAACTCGTTAAATCATATAAA
7816958 AAATTT-AATTTCTAAAAATAAAAATAAATAATACCTT-AAAAATTTAAACTCGTATAATCAAAC
1 AAATTTAAATTTCTAAAAATAAAAATAAA-AATACCTTAAAAAATTTAAACTCGTATAATCAAA-
*** * * * * *
7817021 TAAAAAAACAAAATTAATTTTCTACAAATAAAAATAAATTATACT-TTCAAAATTTTAAATTTAT
64 TAAAAAAACAAAATTAAAGGTCTACAAACAAAAATAAATCATA-TATT-AAAAATTTAAACTCAT
* * * **
7817085 ATAATTATATCC-AAAAAATGTATTTAAACTTCTACAAATAAAAATAAATTATACTTTAAAAATT
127 ATAATTACACCCAAAAAAATGAATTTAAACTTCTACAAATAAAAATAAATTATACCCTAAAAATT
* * * * *
7817149 TAAATTCATATATTCATACCCAAAAAACAAATTAAAACTTCTACAAGTAAATATAAATATTACCT
192 TAAATTCATATATTCAAAACCAAAAAACAAATTAAAACTTCTACAAATAAAAATAAATATAACCT
7817214 TAAAAATTTAAATTTATATAATCAAACCAAAAAAT
257 TAAAAATTTAAATTTATATAATCAAACCAAAAAAT
7817249 AAATTTAAAC
Statistics
Matches: 245, Mismatches: 37, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
345 49 0.20
346 135 0.55
347 61 0.25
ACGTcount: A:0.54, C:0.11, G:0.02, T:0.32
Consensus pattern (346 bp):
AAATTTAAATTTCTAAAAATAAAAATAAAAATACCTTAAAAAATTTAAACTCGTATAATCAAATA
AAAAAACAAAATTAAAGGTCTACAAACAAAAATAAATCATATATTAAAAATTTAAACTCATATAA
TTACACCCAAAAAAATGAATTTAAACTTCTACAAATAAAAATAAATTATACCCTAAAAATTTAAA
TTCATATATTCAAAACCAAAAAACAAATTAAAACTTCTACAAATAAAAATAAATATAACCTTAAA
AATTTAAATTTATATAATCAAACCAAAAAATCTACAAATAAAGATAAATAATATCTTAAAAATTT
AAACTCGTTAAATCATATAAA
Found at i:7817650 original size:287 final size:285
Alignment explanation
Indices: 7816970--7818135 Score: 793
Period size: 287 Copynumber: 4.1 Consensus size: 285
7816960 ATTTAATTTC
* * * * ** *
7816970 TAAAAATAAAAATAAATAATACCTT-AAAAATTTAAACTCGTATAATCAAACTAAAAAAACAAAA
1 TAAAAATAAATATAAATTATACCTTAAAAAATTTAAACTCCTATAATCATACCCAAAAAACAAAT
** * * * ** *
7817034 TTAATTTTCTACAAATAAAAATAAAT-TATACTTTCAAAATTTTAAATTTATATAATTATA-TCC
66 TTAAACTTCTACAAGTAAAAAT-AATGTATAC-TT-AAAAATTTAAACTCGTATAATCATACT-C
** * * * * * * * * * * *
7817097 AAAAAATGTATTTAAACTTCTACAAATAAAAATAAATTATACTTTAAAAATTTAAATTCATATAT
127 AAAAAATAAATTTAAAATTCTAAAAATATAAATAAATAACACCTAAAAAATTTAAACTCGTACAA
* * *
7817162 TC-ATACCCAAAAAACAAATTAAAACTTCTACAAGTAAATATAAATATTACCTTAAAAATTTAAA
192 TCGA-A--CAAAAAGCAAATTTAAACTTCT---A-TAAATAAAAATATTACCTTAAAAATTTAAA
* * * *
7817226 TTTATATAATCAAACCAAAAAATAAATTTAAACTTC
250 CTCATATAATCAAACCAAAAAACAAATTTAAACTTA
* *
7817262 TAAAAATAAATATAAATTATACCTTCAAAAATTTAAACTCCTATAATCATACCCAAAAAATAAAT
1 TAAAAATAAATATAAATTATACCTTAAAAAATTTAAACTCCTATAATCATACCCAAAAAACAAAT
* * * * *
7817327 TTAAACTTTTACAAGTAAAAATAATTTATACTTAAAAATTTAAACTTGTATAATCATAC-CCAAC
66 TTAAACTTCTACAAGTAAAAATAATGTATACTTAAAAATTTAAACTCGTATAATCATACTCAAAA
* * *
7817391 AA-AAATTTAAAAAATTCTAAAAATA-AAATCAAATTACACCCT-AAAAATTTAAACTTGTATAA
131 AATAAATTT--AAAATTCTAAAAATATAAAT-AAATAACA-CCTAAAAAATTTAAACTCGTACAA
***
7817453 TC-AAC-AAATTTAAATTTAAACTTCTATAAATAAAAATATTATACCTTTAAAAATTTAAACTCA
192 TCGAACAAAAAGCAAATTTAAACTTCTATAAATAAAAATA-T-TACC-TTAAAAATTTAAACTCA
* * *
7817516 TATAATTATACCTAAAAGACAAATTTAAACTTA
254 TATAATCAAACC-AAAAAACAAATTTAAACTTA
* * ** *
7817549 TACAAATAGAA-ATAAATTATAGCTTAAAAAATTTAAACTTGTATAAGT-ATACTC-AAAAACAA
1 TAAAAATA-AATATAAATTATACCTTAAAAAATTTAAACTCCTATAA-TCATACCCAAAAAACAA
*
7817611 ATTTAAACTTCTACGAA-TAAAGATAAATAGTAT-CTTAAAAATTTAAACTCGTATAATCATACT
64 ATTTAAACTTCTAC-AAGTAAAAAT-AAT-GTATACTTAAAAATTTAAACTCGTATAATCATACT
* * * * *
7817674 CAAAAAATAAATTTAAACTTCTACAAATATAGATAAATAATACTTAAAAAATTTAAACTCGTACA
126 CAAAAAATAAATTTAAAATTCTAAAAATATAAATAAATAACACCTAAAAAATTTAAACTCGTACA
* * * *
7817739 ATCGAACAAAAAGCAAATTTAAACTTTTATAAATAAAACTA--A-ATT--ATA-TT-AAC-C--A
191 ATCGAACAAAAAGCAAATTTAAACTTCTATAAATAAAAATATTACCTTAAAAATTTAAACTCATA
* * *
7817794 T-A-C---CCAAAAAAGTAAATTTAAAATTC
256 TAATCAAACCAAAAAA-CAAATTTAAACTTA
* * * * * *
7817820 TACAAATAAAAATAAATTATA-CTCT-AACAATTTAAACTCATATAATGA-AACCAAAAAA-AAA
1 TAAAAATAAATATAAATTATACCT-TAAAAAATTTAAACTCCTATAATCATACCCAAAAAACAAA
* * * * * * * * *
7817881 TTAAAAATTTTATAAATAAAAATAAAT-TATATCTTAAAAAAATTGAACTCTTATAATCATACTT
65 TTTAAACTTCTACAAGTAAAAAT-AATGTATA-CTT-AAAAATTTAAACTCGTATAATCATACTC
* * * * * * * * * * * *
7817945 AAAAAACAAATTTAAACTTTTATAAATAAAAATAAATAATACTTTAAAATTTTAAACCCATATAA
127 AAAAAATAAATTTAAAATTCTAAAAATATAAATAAATAACACCTAAAAAATTTAAACTCGTACAA
* * *
7818010 TCAAACAAAAA-TAAATTTAAACTTCTATAAATAAAAATAAATTATACTTTAAAAATTTAAACTC
192 TCGAACAAAAAGCAAATTTAAACTTCTATAAATAAAAAT--A-T-TACCTTAAAAATTTAAACTC
* *** * * *
7818074 GTATAATTTTACTCTAAAAATAAATTTAAACTTC
253 ATATAATCAAAC-CAAAAAACAAATTTAAACTTA
* * *
7818108 TAAAAATAAAAATAAATAATATCTTAAA
1 TAAAAATAAATATAAATTATACCTTAAA
7818136 TCAAACTAAT
Statistics
Matches: 713, Mismatches: 108, Indels: 109
0.77 0.12 0.12
Matches are distributed among these distances:
267 3 0.00
268 2 0.00
269 52 0.07
270 121 0.17
271 33 0.05
275 2 0.00
276 4 0.01
278 3 0.00
279 5 0.01
280 5 0.01
281 3 0.00
283 15 0.02
284 3 0.00
285 5 0.01
286 53 0.07
287 148 0.21
288 52 0.07
289 48 0.07
290 10 0.01
291 60 0.08
292 30 0.04
293 56 0.08
ACGTcount: A:0.54, C:0.12, G:0.02, T:0.32
Consensus pattern (285 bp):
TAAAAATAAATATAAATTATACCTTAAAAAATTTAAACTCCTATAATCATACCCAAAAAACAAAT
TTAAACTTCTACAAGTAAAAATAATGTATACTTAAAAATTTAAACTCGTATAATCATACTCAAAA
AATAAATTTAAAATTCTAAAAATATAAATAAATAACACCTAAAAAATTTAAACTCGTACAATCGA
ACAAAAAGCAAATTTAAACTTCTATAAATAAAAATATTACCTTAAAAATTTAAACTCATATAATC
AAACCAAAAAACAAATTTAAACTTA
Found at i:7817892 original size:125 final size:124
Alignment explanation
Indices: 7817668--7817912 Score: 325
Period size: 125 Copynumber: 2.0 Consensus size: 124
7817658 CTCGTATAAT
* * * *
7817668 CATACTCAAAAAATAAATTTAAACTTCTACAAATATAGATAAATAATACTTAAAAAATTTAAACT
1 CATACCCAAAAAATAAATTTAAAATTCTACAAATAAAAATAAATAATACTTAAAAAATTTAAACT
* * * * *
7817733 CGTACAATCGAACAAAAAGCAAATTTAAACTTTTATAAATAAAACTAAATTATATTAAC
66 CATACAATCGAACAAAAAGAAAATTAAAAATTTTATAAATAAAAATAAATTATATTAAC
* *
7817792 CATACCCAAAAAAGTAAATTTAAAATTCTACAAATAAAAATAAATTATACTCT-AACAATTTAAA
1 CATACCCAAAAAA-TAAATTTAAAATTCTACAAATAAAAATAAATAATACT-TAAAAAATTTAAA
*
7817856 CTCATATAAT-GAAACCAAAAA-AAAATTAAAAATTTTATAAATAAAAATAAATTATAT
64 CTCATACAATCG-AA-CAAAAAGAAAATTAAAAATTTTATAAATAAAAATAAATTATAT
7817913 CTTAAAAAAA
Statistics
Matches: 105, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
124 13 0.12
125 85 0.81
126 7 0.07
ACGTcount: A:0.56, C:0.12, G:0.02, T:0.29
Consensus pattern (124 bp):
CATACCCAAAAAATAAATTTAAAATTCTACAAATAAAAATAAATAATACTTAAAAAATTTAAACT
CATACAATCGAACAAAAAGAAAATTAAAAATTTTATAAATAAAAATAAATTATATTAAC
Found at i:7818000 original size:40 final size:39
Alignment explanation
Indices: 7817952--7818072 Score: 98
Period size: 40 Copynumber: 3.3 Consensus size: 39
7817942 CTTAAAAAAC
*
7817952 AAATTTAAACTTTTATAAATAAAAATAAATAATACTTTA
1 AAATTTAAACTTATATAAATAAAAATAAATAATACTTTA
** * *
7817991 AAATTTTAAACCCATAT-AAT-CAAA-CAA-AA-A---T-
1 AAA-TTTAAACTTATATAAATAAAAATAAATAATACTTTA
* *
7818022 AAATTTAAACTTCTATAAATAAAAATAAATTATACTTTAA
1 AAATTTAAACTTATATAAATAAAAATAAATAATACTTT-A
7818062 AAATTTAAACT
1 AAATTTAAACT
7818073 CGTATAATTT
Statistics
Matches: 60, Mismatches: 11, Indels: 21
0.65 0.12 0.23
Matches are distributed among these distances:
30 10 0.17
31 6 0.10
32 4 0.07
33 2 0.03
34 1 0.02
35 2 0.03
36 2 0.03
37 2 0.03
38 4 0.07
39 6 0.10
40 21 0.35
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (39 bp):
AAATTTAAACTTATATAAATAAAAATAAATAATACTTTA
Found at i:7818039 original size:70 final size:71
Alignment explanation
Indices: 7817800--7818124 Score: 364
Period size: 70 Copynumber: 4.5 Consensus size: 71
7817790 ACCATACCCA
* * * *
7817800 AAAAAGTAAATTTAAAATTCTACAAATAAAAATAAATTATACTCTAACAATTTAAACTCATATAA
1 AAAAA-TAAATTTAAACTTCTATAAATAAAAATAAATTATACTTTAAAAATTTAAACTCATATAA
* *
7817865 TGAAACC
65 TCAAACT
* * * * * * * *
7817872 AAAAAAAAATTAAAAATTTTATAAATAAAAATAAATTATATCTTAAAAAAATTGAACTCTTATAA
1 AAAAATAAATTTAAACTTCTATAAATAAAAATAAATTATA-CTTTAAAAATTTAAACTCATATAA
*
7817937 TCATACTT
65 TCAAAC-T
* * * * *
7817945 AAAAAACAAATTTAAACTTTTATAAATAAAAATAAATAATACTTTAAAATTTTAAACCCATATAA
1 -AAAAATAAATTTAAACTTCTATAAATAAAAATAAATTATACTTTAAAAATTTAAACTCATATAA
7818010 TCAAAC-
65 TCAAACT
*
7818016 AAAAATAAATTTAAACTTCTATAAATAAAAATAAATTATACTTTAAAAATTTAAACTCGTATAAT
1 AAAAATAAATTTAAACTTCTATAAATAAAAATAAATTATACTTTAAAAATTTAAACTCATATAA-
* **
7818081 TTTACTCT
65 -TCAAACT
*
7818089 AAAAATAAATTTAAACTTCTAAAAATAAAAATAAAT
1 AAAAATAAATTTAAACTTCTATAAATAAAAATAAAT
7818125 AATATCTTAA
Statistics
Matches: 213, Mismatches: 34, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
70 58 0.27
71 31 0.15
72 30 0.14
73 58 0.27
74 36 0.17
ACGTcount: A:0.57, C:0.10, G:0.01, T:0.33
Consensus pattern (71 bp):
AAAAATAAATTTAAACTTCTATAAATAAAAATAAATTATACTTTAAAAATTTAAACTCATATAAT
CAAACT
Found at i:7818070 original size:26 final size:26
Alignment explanation
Indices: 7818016--7818065 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
7818006 ATAATCAAAC
*
7818016 AAAAATAAATTTAAACTTCTATAAAT
1 AAAAATAAATTTAAACTTCTAAAAAT
*
7818042 AAAAATAAA-TTATACTT-TAAAAAT
1 AAAAATAAATTTAAACTTCTAAAAAT
7818066 TTAAACTCGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 6 0.27
25 7 0.32
26 9 0.41
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (26 bp):
AAAAATAAATTTAAACTTCTAAAAAT
Found at i:7818123 original size:20 final size:20
Alignment explanation
Indices: 7818086--7818123 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7818076 ATAATTTTAC
**
7818086 TCTAAAAATAAATTTAAACT
1 TCTAAAAATAAAAATAAACT
7818106 TCTAAAAATAAAAATAAA
1 TCTAAAAATAAAAATAAA
7818124 TAATATCTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (20 bp):
TCTAAAAATAAAAATAAACT
Found at i:7818135 original size:73 final size:70
Alignment explanation
Indices: 7817800--7818135 Score: 336
Period size: 73 Copynumber: 4.7 Consensus size: 70
7817790 ACCATACCCA
* * *
7817800 AAAAAGTAAATTTAAAATTCTACAAATAAAAATAAATTATACTCTAACAATTTAAACTCATATAA
1 AAAAA-TAAATTTAAACTTCTATAAATAAAAATAAATTATACT-TAAAAATTTAAACTCATATAA
*
7817865 TGAAAC-C
64 T-ATACTC
* * * * * * *
7817872 AAAAAAAAATTAAAAATTTTATAAATAAAAATAAATTATATCTTAAAAAAATTGAACTCTTATAA
1 AAAAATAAATTTAAACTTCTATAAATAAAAATAAATTATA-CTT-AAAAATTTAAACTCATATAA
*
7817937 TCATACTTA
64 T-ATAC-TC
* * * * *
7817946 AAAAACAAATTTAAACTTTTATAAATAAAAATAAATAATACTTTAAAATTTTAAACCCATATAAT
1 AAAAATAAATTTAAACTTCTATAAATAAAAATAAATTATAC-TTAAAAATTTAAACTCATATAAT
*
7818011 CA-A-AC
65 -ATACTC
*
7818016 AAAAATAAATTTAAACTTCTATAAATAAAAATAAATTATACTTTAAAAATTTAAACTCGTATAAT
1 AAAAATAAATTTAAACTTCTATAAATAAAAATAAATTATAC-TTAAAAATTTAAACTCATATAA-
*
7818081 TTTACTC
64 TATACTC
* *
7818088 TAAAAATAAATTTAAACTTCTAAAAATAAAAATAAATAATATCTTAAA
1 -AAAAATAAATTTAAACTTCTATAAATAAAAATAAATTATA-CTTAAA
7818136 TCAAACTAAT
Statistics
Matches: 222, Mismatches: 32, Indels: 19
0.81 0.12 0.07
Matches are distributed among these distances:
70 58 0.26
71 34 0.15
72 29 0.13
73 62 0.28
74 39 0.18
ACGTcount: A:0.57, C:0.10, G:0.01, T:0.33
Consensus pattern (70 bp):
AAAAATAAATTTAAACTTCTATAAATAAAAATAAATTATACTTAAAAATTTAAACTCATATAATA
TACTC
Found at i:7818768 original size:8 final size:10
Alignment explanation
Indices: 7818747--7818787 Score: 50
Period size: 9 Copynumber: 4.3 Consensus size: 10
7818737 ATTAATTTAG
7818747 TTTTATATAT
1 TTTTATATAT
7818757 TTTTATA-AT
1 TTTTATATAT
*
7818766 TTTTTTATAT
1 TTTTATATAT
*
7818776 GTTTA-ATAT
1 TTTTATATAT
7818785 TTT
1 TTT
7818788 AACAAGTCGA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
9 14 0.54
10 12 0.46
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (10 bp):
TTTTATATAT
Found at i:7819029 original size:18 final size:20
Alignment explanation
Indices: 7819008--7819049 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
7818998 GGTTAGATTA
7819008 AATAAA-TAT-AAAGCATAT
1 AATAAATTATAAAAGCATAT
*
7819026 AATAAATTATAAAAGTATAT
1 AATAAATTATAAAAGCATAT
7819046 AATA
1 AATA
7819050 CTAATTTACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.29
19 3 0.14
20 12 0.57
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (20 bp):
AATAAATTATAAAAGCATAT
Found at i:7819499 original size:2 final size:2
Alignment explanation
Indices: 7819492--7819531 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
7819482 GGCACTTCTA
7819492 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7819532 TACCACAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7825635 original size:45 final size:45
Alignment explanation
Indices: 7825584--7825673 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
7825574 TAGGGATAAG
7825584 GTTCAAATTTACCACTTTACTACTTAGTAATCCAATTCTACCACT
1 GTTCAAATTTACCACTTTACTACTTAGTAATCCAATTCTACCACT
7825629 GTTCAAATTTACCACTTTACTACTTAGTAATCCAATTCTACCACT
1 GTTCAAATTTACCACTTTACTACTTAGTAATCCAATTCTACCACT
7825674 AACCTTTCAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.31, C:0.27, G:0.04, T:0.38
Consensus pattern (45 bp):
GTTCAAATTTACCACTTTACTACTTAGTAATCCAATTCTACCACT
Found at i:7826457 original size:35 final size:35
Alignment explanation
Indices: 7826418--7826500 Score: 94
Period size: 35 Copynumber: 2.4 Consensus size: 35
7826408 GTATTGGCTA
** * ** *
7826418 TACATTAGCTGTATGACGTTATGATGTATTAGTTG
1 TACATTAGCTGTACAACATTATGACATATTACTTG
* *
7826453 TACATTAGTTGTACAATATTATGACATATTACTTG
1 TACATTAGCTGTACAACATTATGACATATTACTTG
7826488 TACATTAGCTGTA
1 TACATTAGCTGTA
7826501 GATATTGAGC
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (35 bp):
TACATTAGCTGTACAACATTATGACATATTACTTG
Found at i:7831104 original size:35 final size:35
Alignment explanation
Indices: 7831056--7831149 Score: 125
Period size: 35 Copynumber: 2.7 Consensus size: 35
7831046 TTAGTAATGT
* * ** *
7831056 TGTATTGGCTGTACATTAGCTGTGTAATGTTATGA
1 TGTATTAGTTGTACATTAGCTGTACAATATTATGA
7831091 TGTATTAGTTGTACATTAGCTGTACAATATTATGA
1 TGTATTAGTTGTACATTAGCTGTACAATATTATGA
**
7831126 CATATTAGTTGTACATTAGCTGTA
1 TGTATTAGTTGTACATTAGCTGTA
7831150 GATATTGAGC
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 52 1.00
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.43
Consensus pattern (35 bp):
TGTATTAGTTGTACATTAGCTGTACAATATTATGA
Found at i:7831461 original size:35 final size:35
Alignment explanation
Indices: 7831422--7831489 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
7831412 AGAATTTAGC
7831422 ATAGAACAGGATAAATACTCCCAGGTAATGCAAGA
1 ATAGAACAGGATAAATACTCCCAGGTAATGCAAGA
7831457 ATAGAACAGGATAAATACTCCCAGGTAATGCAA
1 ATAGAACAGGATAAATACTCCCAGGTAATGCAA
7831490 CTTGCCACTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.46, C:0.18, G:0.19, T:0.18
Consensus pattern (35 bp):
ATAGAACAGGATAAATACTCCCAGGTAATGCAAGA
Found at i:7833705 original size:45 final size:46
Alignment explanation
Indices: 7833628--7833723 Score: 113
Period size: 45 Copynumber: 2.1 Consensus size: 46
7833618 CCGTTGGATG
* * * * * **
7833628 TATGTATGCCCTTTAATATCAGGCCT-TGGGGTTACTTGTTGGACA
1 TATGTATGACATTTAACATCAGGCCTCAGGGTTTACTCATTGGACA
7833673 TATGTATGACATTTAACATCAGGCCTCAGGGTTTACTCATTGGACA
1 TATGTATGACATTTAACATCAGGCCTCAGGGTTTACTCATTGGACA
*
7833719 AATGT
1 TATGT
7833724 GCAATTTAGC
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
45 23 0.55
46 19 0.45
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (46 bp):
TATGTATGACATTTAACATCAGGCCTCAGGGTTTACTCATTGGACA
Found at i:7843666 original size:2 final size:2
Alignment explanation
Indices: 7843655--7843689 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
7843645 GCATCACGAG
7843655 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7843690 CATAAATTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7853967 original size:48 final size:48
Alignment explanation
Indices: 7853891--7853984 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 48
7853881 TTGAAGGGGA
*
7853891 GTGTTAGAAAATACAAAATTTCAGTCCTTAATAATAGGACAAATTGTT
1 GTGTTAGAAAATACAAAATTTCAATCCTTAATAATAGGACAAATTGTT
* * * * *
7853939 GTGTTGGAATATACACAATTTCAATCCTTAATTATAGGACAGATTG
1 GTGTTAGAAAATACAAAATTTCAATCCTTAATAATAGGACAAATTG
7853985 CTGTAGAGAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (48 bp):
GTGTTAGAAAATACAAAATTTCAATCCTTAATAATAGGACAAATTGTT
Found at i:7856776 original size:22 final size:22
Alignment explanation
Indices: 7856751--7856792 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7856741 AGAGTCAATC
* *
7856751 TCCTAGTTTAGTGGGATTAGTT
1 TCCTAATTCAGTGGGATTAGTT
7856773 TCCTAATTCAGTGGGATTAG
1 TCCTAATTCAGTGGGATTAG
7856793 CTTCTTGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.12, G:0.26, T:0.40
Consensus pattern (22 bp):
TCCTAATTCAGTGGGATTAGTT
Found at i:7861553 original size:22 final size:22
Alignment explanation
Indices: 7861528--7861581 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
7861518 AGGGTCAATC
* *
7861528 TCCTAGTTTAGTGGGATTAGTT
1 TCCTAATTTAGTGGGATTAGCT
*
7861550 TCCTAATTCAGTGGGATTAGCT
1 TCCTAATTTAGTGGGATTAGCT
7861572 TCCTAATTTA
1 TCCTAATTTA
7861582 TGTTATACTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.22, C:0.15, G:0.20, T:0.43
Consensus pattern (22 bp):
TCCTAATTTAGTGGGATTAGCT
Found at i:7865636 original size:17 final size:17
Alignment explanation
Indices: 7865611--7865646 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
7865601 ATTAAGTTAC
7865611 AACACTGTAGCCAATGT
1 AACACTGTAGCCAATGT
*
7865628 AACAGTGTAGCCAATGT
1 AACACTGTAGCCAATGT
7865645 AA
1 AA
7865647 TTTCTAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.22
Consensus pattern (17 bp):
AACACTGTAGCCAATGT
Found at i:7871423 original size:20 final size:20
Alignment explanation
Indices: 7871398--7871439 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
7871388 ATTATACGCG
7871398 TAAAAATAATTAAAATATAA
1 TAAAAATAATTAAAATATAA
*
7871418 TAAAAATAATTTAAATATAA
1 TAAAAATAATTAAAATATAA
7871438 TA
1 TA
7871440 TAATTAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAAAATAATTAAAATATAA
Found at i:7871476 original size:17 final size:17
Alignment explanation
Indices: 7871454--7871502 Score: 59
Period size: 16 Copynumber: 3.0 Consensus size: 17
7871444 TAAATAAATT
7871454 TATTAAAATTTATATAA
1 TATTAAAATTTATATAA
*
7871471 TATT-AATTATTA-AT-A
1 TATTAAAAT-TTATATAA
7871486 TATTAAAATTTATATAA
1 TATTAAAATTTATATAA
7871503 ATATATAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
15 8 0.31
16 10 0.38
17 8 0.31
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TATTAAAATTTATATAA
Found at i:7871483 original size:7 final size:8
Alignment explanation
Indices: 7871470--7871559 Score: 50
Period size: 7 Copynumber: 11.5 Consensus size: 8
7871460 AATTTATATA
7871470 ATATTAAT
1 ATATTAAT
7871478 -TATTAAT
1 ATATTAAT
7871485 ATATTAA-
1 ATATTAAT
7871492 A-ATT--T
1 ATATTAAT
*
7871497 ATATAAAT
1 ATATTAAT
7871505 ATA-TAAT
1 ATATTAAT
*
7871512 ATTTTAAAT
1 ATATT-AAT
7871521 ATATTATATT
1 ATATTA-A-T
* *
7871531 ATATAAAA
1 ATATTAAT
7871539 ATA-TAAT
1 ATATTAAT
7871546 ATATATATAT
1 ATAT-TA-AT
7871556 ATAT
1 ATAT
7871560 AAAAATACAA
Statistics
Matches: 62, Mismatches: 8, Indels: 22
0.67 0.09 0.24
Matches are distributed among these distances:
5 1 0.02
6 5 0.08
7 18 0.29
8 15 0.24
9 11 0.18
10 12 0.19
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
ATATTAAT
Found at i:7871487 original size:20 final size:19
Alignment explanation
Indices: 7871464--7871561 Score: 82
Period size: 17 Copynumber: 5.4 Consensus size: 19
7871454 TATTAAAATT
*
7871464 TATATAATATTAATTATTAA
1 TATATAATATTAA-TATAAA
* *
7871484 TATATTAAAATTTATATAAA
1 TATA-TAATATTAATATAAA
7871504 TATATAATATT--T-TAAA
1 TATATAATATTAATATAAA
*
7871520 TATATTATATT-ATATAAA
1 TATATAATATTAATATAAA
* *
7871538 AATATAATA-T-ATATATA
1 TATATAATATTAATATAAA
7871555 TATATAA
1 TATATAA
7871562 AAATACAAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
16 14 0.21
17 15 0.23
18 11 0.17
19 6 0.09
20 13 0.20
21 7 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TATATAATATTAATATAAA
Found at i:7871501 original size:2 final size:2
Alignment explanation
Indices: 7871496--7871560 Score: 50
Period size: 2 Copynumber: 35.0 Consensus size: 2
7871486 TATTAAAATT
* * *
7871496 TA TA TA AA TA TA TA -A TA T- TT TA AA TA TA T- TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
7871534 TA AA AA TA TA -A TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7871561 AAAATACAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
1 5 0.10
2 46 0.90
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:7871511 original size:27 final size:32
Alignment explanation
Indices: 7871432--7871526 Score: 102
Period size: 32 Copynumber: 2.8 Consensus size: 32
7871422 AATAATTTAA
* *
7871432 ATATAATA-TAATTAAATAAATTTATTAAAATTT
1 ATATAATATTAATT--ATTAATATATTAAAATTT
7871465 ATATAATATTAATTATTAATATATTAAAATTT
1 ATATAATATTAATTATTAATATATTAAAATTT
*
7871497 ATATAAATATATAATATTTTAAATATATTA
1 ATAT-AATAT-TAAT-TATT-AATATATTA
7871527 TATTATATAA
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
32 20 0.37
33 13 0.24
34 9 0.17
35 3 0.06
36 9 0.17
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (32 bp):
ATATAATATTAATTATTAATATATTAAAATTT
Found at i:7871537 original size:34 final size:35
Alignment explanation
Indices: 7871454--7871565 Score: 126
Period size: 34 Copynumber: 3.3 Consensus size: 35
7871444 TAAATAAATT
7871454 TATTAAAATTTATAT-AATAT-TAAT-TATTAATA
1 TATTAAAATTTATATAAATATATAATATATTAATA
*
7871486 TATTAAAATTTATATAAATATATAATATTTTAAATA
1 TATTAAAATTTATATAAATATATAATATATT-AATA
* *
7871522 TATT-ATA-TTATATAAAAATATAATATATATATATA
1 TATTAAAATTTATATAAATATATAATATAT-TA-ATA
*
7871557 TATAAAAAT
1 TATTAAAAT
7871566 ACAAATATAA
Statistics
Matches: 66, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
32 15 0.23
33 5 0.08
34 24 0.36
35 12 0.18
36 10 0.15
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (35 bp):
TATTAAAATTTATATAAATATATAATATATTAATA
Found at i:7871558 original size:25 final size:26
Alignment explanation
Indices: 7871518--7871574 Score: 84
Period size: 25 Copynumber: 2.3 Consensus size: 26
7871508 TAATATTTTA
*
7871518 AATATAT-TATATTATATAAAAATAT
1 AATATATATATATTATATAAAAATAC
7871543 AATATATATATA-TATATAAAAATAC
1 AATATATATATATTATATAAAAATAC
7871568 AA-ATATA
1 AATATATA
7871575 AAAATTACCT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 5 0.17
25 21 0.70
26 4 0.13
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (26 bp):
AATATATATATATTATATAAAAATAC
Found at i:7872150 original size:14 final size:13
Alignment explanation
Indices: 7872120--7872165 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 13
7872110 CATATTATAT
7872120 ATTTTT-AATTT-
1 ATTTTTAAATTTA
7872131 ATTTTTAAAGTTTA
1 ATTTTTAAA-TTTA
7872145 ATTTTTAATAATTTA
1 ATTTTT-A-AATTTA
7872160 ATTTTT
1 ATTTTT
7872166 TATAAATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.20
12 2 0.07
13 3 0.10
14 6 0.20
15 11 0.37
16 2 0.07
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (13 bp):
ATTTTTAAATTTA
Found at i:7872150 original size:15 final size:15
Alignment explanation
Indices: 7872125--7872170 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
7872115 TATATATTTT
7872125 TAATTT-ATTTTTAA
1 TAATTTAATTTTTAA
*
7872139 -AGTTTAATTTTTAA
1 TAATTTAATTTTTAA
*
7872153 TAATTTAATTTTTTA
1 TAATTTAATTTTTAA
7872168 TAA
1 TAA
7872171 ATTTTAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 4 0.15
14 8 0.30
15 15 0.56
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (15 bp):
TAATTTAATTTTTAA
Found at i:7872253 original size:24 final size:23
Alignment explanation
Indices: 7872194--7872255 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
7872184 AATAATTTAA
*
7872194 TAAAGTTTTCAATATTTACACTG
1 TAAAATTTTCAATATTTACACTG
**
7872217 TAAAATTTT-AATATTTTTACT-
1 TAAAATTTTCAATATTTACACTG
7872238 TAAATATTTTTCAATATT
1 TAAA-A-TTTTCAATATT
7872256 GATATACCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
21 4 0.12
22 11 0.33
23 12 0.36
24 6 0.18
ACGTcount: A:0.37, C:0.08, G:0.03, T:0.52
Consensus pattern (23 bp):
TAAAATTTTCAATATTTACACTG
Found at i:7873248 original size:19 final size:18
Alignment explanation
Indices: 7873220--7873256 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
7873210 TATTATTTAA
*
7873220 AATATTATAAATTTATAT
1 AATATTATAAATATATAT
7873238 AATATTTATAAATATATAT
1 AATA-TTATAAATATATAT
7873257 TTATAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
AATATTATAAATATATAT
Found at i:7873258 original size:14 final size:14
Alignment explanation
Indices: 7873234--7873275 Score: 66
Period size: 14 Copynumber: 2.9 Consensus size: 14
7873224 TTATAAATTT
7873234 ATATAATATTTATAA
1 ATAT-ATATTTATAA
7873249 ATATATATTTATAA
1 ATATATATTTATAA
*
7873263 ATATATTTTTATA
1 ATATATATTTATA
7873276 TTTTTATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 22 0.85
15 4 0.15
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
ATATATATTTATAA
Found at i:7873383 original size:23 final size:24
Alignment explanation
Indices: 7873344--7873388 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
7873334 TTTTCAACAG
*
7873344 GAAAAGATAAAAGAGAAAAAAAAA
1 GAAAAAATAAAAGAGAAAAAAAAA
7873368 GAAAAAAT-AAAGAGAAAAAAA
1 GAAAAAATAAAAGAGAAAAAAA
7873389 TCATATGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (24 bp):
GAAAAAATAAAAGAGAAAAAAAAA
Found at i:7873529 original size:22 final size:20
Alignment explanation
Indices: 7873465--7873537 Score: 62
Period size: 21 Copynumber: 3.6 Consensus size: 20
7873455 TATTTTTATA
*
7873465 TTTTAATATTTATGTCATATT
1 TTTTTATATTTAT-TCATATT
*
7873486 TTTTTTTATTTTAATT-A-A-T
1 TTTTTATA-TTT-ATTCATATT
*
7873505 TTTTAATATTATATTCATATT
1 TTTTTATATT-TATTCATATT
7873526 TTTTTATATTTA
1 TTTTTATATTTA
7873538 AGTATTAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 13
0.69 0.08 0.22
Matches are distributed among these distances:
18 5 0.12
19 9 0.22
20 4 0.10
21 17 0.41
22 4 0.10
23 2 0.05
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (20 bp):
TTTTTATATTTATTCATATT
Found at i:7873972 original size:24 final size:23
Alignment explanation
Indices: 7873916--7874005 Score: 85
Period size: 24 Copynumber: 3.7 Consensus size: 23
7873906 AAATATTTTT
*
7873916 TTATATTTTTATA-TTTATATCATA
1 TTAT-TTTTTATATTTTAT-TTATA
*
7873940 TTTAGTTTTTATATTTTATTT-TAA
1 -TTATTTTTTATATTTTATTTAT-A
*
7873964 TTAATTTTTAATATTTTATTTATA
1 TT-ATTTTTTATATTTTATTTATA
7873988 TTATTTTTTATATATTTA
1 TTATTTTTTATAT-TTTA
7874006 AAATATTAAC
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
23 13 0.24
24 33 0.60
25 9 0.16
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.68
Consensus pattern (23 bp):
TTATTTTTTATATTTTATTTATA
Found at i:7874001 original size:14 final size:14
Alignment explanation
Indices: 7873899--7874003 Score: 57
Period size: 14 Copynumber: 7.7 Consensus size: 14
7873889 ATGTATATAA
*
7873899 TATTTATAAATATTT
1 TATTTAT-ATTATTT
7873914 T-TTTATATT-TTT
1 TATTTATATTATTT
*
7873926 ATATTTATATCATATT
1 -TATTTATATTAT-TT
*
7873942 TAGTTTTTA-TATTT
1 TA-TTTATATTATTT
*
7873956 TATTT-TAATTA-AT
1 TATTTAT-ATTATTT
7873969 T-TTTA-A-TATTT
1 TATTTATATTATTT
7873980 TATTTATATTATTT
1 TATTTATATTATTT
7873994 T-TTATATATT
1 TATT-TATATT
7874004 TAAAATATTA
Statistics
Matches: 71, Mismatches: 6, Indels: 27
0.68 0.06 0.26
Matches are distributed among these distances:
10 2 0.03
11 3 0.04
12 11 0.15
13 12 0.17
14 30 0.42
15 6 0.08
16 7 0.10
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.68
Consensus pattern (14 bp):
TATTTATATTATTT
Found at i:7874431 original size:22 final size:22
Alignment explanation
Indices: 7874397--7874447 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
7874387 TTCTGATATA
7874397 TTTATATAATATTCAT-ATTATT
1 TTTATATAATATT-ATAATTATT
* * *
7874419 TTTATGTAGTATTTTAATTATT
1 TTTATATAATATTATAATTATT
7874441 TTTATAT
1 TTTATAT
7874448 GTTTCATTCG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 1 0.04
22 23 0.96
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (22 bp):
TTTATATAATATTATAATTATT
Found at i:7875058 original size:16 final size:16
Alignment explanation
Indices: 7875034--7875074 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
7875024 ATATAATTAT
7875034 ATAATATAAAATAAATA
1 ATAATATAAAATAAA-A
7875051 AT-ATATAAAATAAAA
1 ATAATATAAAATAAAA
7875066 ATAATATAA
1 ATAATATAA
7875075 GTATAATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 3 0.13
16 18 0.78
17 2 0.09
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
ATAATATAAAATAAAA
Found at i:7875091 original size:19 final size:18
Alignment explanation
Indices: 7875031--7875111 Score: 76
Period size: 19 Copynumber: 4.3 Consensus size: 18
7875021 AAGATATAAT
7875031 TATATAATATAA-AATAAA
1 TATATAATATAATAA-AAA
*
7875049 TA-ATATATAAAATAAAAA
1 TATATA-ATATAATAAAAA
7875067 TAATATAAGTATAATAAAAA
1 T-ATATAA-TATAATAAAAA
* *
7875087 TATATGAATGTACTAAAAA
1 TATAT-AATATAATAAAAA
7875106 TATATA
1 TATATA
7875112 TAATATAAAT
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
17 3 0.06
18 12 0.23
19 22 0.42
20 16 0.30
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (18 bp):
TATATAATATAATAAAAA
Found at i:7881505 original size:12 final size:12
Alignment explanation
Indices: 7881488--7881540 Score: 61
Period size: 12 Copynumber: 4.2 Consensus size: 12
7881478 AATTCCTGCA
7881488 TAATTAAATTTT
1 TAATTAAATTTT
7881500 TAATTAAATTTAT
1 TAATTAAATTT-T
* *
7881513 TAAGGTAAAATTT
1 TAA-TTAAATTTT
*
7881526 TAATTAAACTTT
1 TAATTAAATTTT
7881538 TAA
1 TAA
7881541 GGTTTTCTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
12 21 0.60
13 8 0.23
14 6 0.17
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (12 bp):
TAATTAAATTTT
Found at i:7881526 original size:26 final size:25
Alignment explanation
Indices: 7881492--7881543 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
7881482 CCTGCATAAT
* *
7881492 TAAATTTTTAATTAAATTTATTAAGG
1 TAAAATTTTAATTAAACTT-TTAAGG
7881518 TAAAATTTTAATTAAACTTTTAAGG
1 TAAAATTTTAATTAAACTTTTAAGG
7881543 T
1 T
7881544 TTTCTAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (25 bp):
TAAAATTTTAATTAAACTTTTAAGG
Found at i:7881859 original size:27 final size:28
Alignment explanation
Indices: 7881819--7881919 Score: 109
Period size: 28 Copynumber: 3.6 Consensus size: 28
7881809 TTTTATGATC
7881819 TTTTAATTAGAATTTTATATAATTAGAT
1 TTTTAATTAGAATTTTATATAATTAGAT
* * * *
7881847 TTTTAATT-TAATTTT-TCACATATAAAAT
1 TTTTAATTAGAATTTTAT-ATA-ATTAGAT
*
7881875 TTTTAATTAGAATTTTACATAATTAGAT
1 TTTTAATTAGAATTTTATATAATTAGAT
*
7881903 TCTTAATT-GAATTTTAT
1 TTTTAATTAGAATTTTAT
7881920 CACATGTAAA
Statistics
Matches: 58, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
26 1 0.02
27 16 0.28
28 33 0.57
29 8 0.14
ACGTcount: A:0.38, C:0.04, G:0.05, T:0.53
Consensus pattern (28 bp):
TTTTAATTAGAATTTTATATAATTAGAT
Found at i:7881881 original size:56 final size:56
Alignment explanation
Indices: 7881819--7881939 Score: 190
Period size: 56 Copynumber: 2.2 Consensus size: 56
7881809 TTTTATGATC
* * *
7881819 TTTTAATTAGAATTTTATATAATTAGATTTTTAATTTAATTTT-TCACATATAAAA
1 TTTTAATTAGAATTTTACATAATTAGATTCTTAATTGAATTTTATCACATATAAAA
*
7881874 TTTTTAATTAGAATTTTACATAATTAGATTCTTAATTGAATTTTATCACATGTAAAA
1 -TTTTAATTAGAATTTTACATAATTAGATTCTTAATTGAATTTTATCACATATAAAA
7881931 TTTTAATTA
1 TTTTAATTA
7881940 ACTCTTTTAA
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
56 49 0.82
57 11 0.18
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (56 bp):
TTTTAATTAGAATTTTACATAATTAGATTCTTAATTGAATTTTATCACATATAAAA
Found at i:7881936 original size:28 final size:27
Alignment explanation
Indices: 7881819--7881938 Score: 86
Period size: 28 Copynumber: 4.3 Consensus size: 27
7881809 TTTTATGATC
* * *
7881819 TTTTAATTAGAATTTTAT-ATAATTAGAT
1 TTTTAATT-GAATTTTATCA-CATTAAAA
*
7881847 TTTTAATTTAATTTT-TCACATATAAAA
1 TTTTAATTGAATTTTATCACAT-TAAAA
* *
7881874 TTTTTAATTAGAATTTTA-CATAATT-AGA
1 -TTTTAATT-GAATTTTATCA-CATTAAAA
7881902 TTCTTAATTGAATTTTATCACATGTAAAA
1 TT-TTAATTGAATTTTATCACAT-TAAAA
7881931 TTTTAATT
1 TTTTAATT
7881939 AACTCTTTTA
Statistics
Matches: 73, Mismatches: 9, Indels: 20
0.72 0.09 0.20
Matches are distributed among these distances:
26 3 0.04
27 22 0.30
28 33 0.45
29 13 0.18
30 2 0.03
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (27 bp):
TTTTAATTGAATTTTATCACATTAAAA
Found at i:7886012 original size:28 final size:28
Alignment explanation
Indices: 7885981--7886045 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 28
7885971 AGATATGTGT
7885981 TAAGATAATATAGATAAGCTTGTCTTAA
1 TAAGATAATATAGATAAGCTTGTCTTAA
* * * * * *
7886009 TAAGACAATGTGGATGAGGTTGTCTTAC
1 TAAGATAATATAGATAAGCTTGTCTTAA
*
7886037 TATGATAAT
1 TAAGATAAT
7886046 GTTTAAAGTA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.35
Consensus pattern (28 bp):
TAAGATAATATAGATAAGCTTGTCTTAA
Found at i:7888490 original size:19 final size:19
Alignment explanation
Indices: 7888466--7888503 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
7888456 GATAAAGTCC
7888466 ATAATCATCCTAGTAGACT
1 ATAATCATCCTAGTAGACT
7888485 ATAATCATCCTAGTAGACT
1 ATAATCATCCTAGTAGACT
7888504 GCATGTTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.32
Consensus pattern (19 bp):
ATAATCATCCTAGTAGACT
Found at i:7890028 original size:27 final size:27
Alignment explanation
Indices: 7889965--7890038 Score: 96
Period size: 27 Copynumber: 2.7 Consensus size: 27
7889955 ATCCAAATAA
7889965 AGTTGTCTTAATAAGATAATGTGGATAT
1 AGTTGTCTTAATAAGATAA-GTGGATAT
* *
7889993 ATTTATCTTAATAAGATCAA-TGGATAT
1 AGTTGTCTTAATAAGAT-AAGTGGATAT
*
7890020 AGTTGTCTTAATAGGATAA
1 AGTTGTCTTAATAAGATAA
7890039 TATCTATAGT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
26 2 0.05
27 21 0.52
28 15 0.38
29 2 0.05
ACGTcount: A:0.38, C:0.05, G:0.18, T:0.39
Consensus pattern (27 bp):
AGTTGTCTTAATAAGATAAGTGGATAT
Found at i:7890098 original size:26 final size:26
Alignment explanation
Indices: 7890067--7890118 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
7890057 GTTAAGACAA
*
7890067 TATGGATAAGCTCATTTTAATAAGAC
1 TATGGATAAGCTCATCTTAATAAGAC
* *
7890093 TATGGATAAGGTTATCTTAATAAGAC
1 TATGGATAAGCTCATCTTAATAAGAC
7890119 AATTTCTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (26 bp):
TATGGATAAGCTCATCTTAATAAGAC
Found at i:7890172 original size:28 final size:28
Alignment explanation
Indices: 7890141--7890204 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 28
7890131 AGACATAAGT
* * *
7890141 TAAGATAAAATGGATAAGCTTGTCTTAA
1 TAAGACAAAATAGATAAACTTGTCTTAA
* *
7890169 TAAGACAATATAGATAAACTTGTTTTAA
1 TAAGACAAAATAGATAAACTTGTCTTAA
7890197 CT-AGACAA
1 -TAAGACAA
7890205 TGTCTAAAGT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
28 29 0.97
29 1 0.03
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.31
Consensus pattern (28 bp):
TAAGACAAAATAGATAAACTTGTCTTAA
Found at i:7893883 original size:13 final size:13
Alignment explanation
Indices: 7893865--7893890 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7893855 ATATTTTGGG
7893865 ATGTATCGATACA
1 ATGTATCGATACA
7893878 ATGTATCGATACA
1 ATGTATCGATACA
7893891 TATTGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:7893907 original size:32 final size:33
Alignment explanation
Indices: 7893843--7893910 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
7893833 CGTTACAAGC
* *
7893843 CAATGTATCGATATATTTTGGGATGTATCGATA
1 CAATGTATCGATACATATTGGGATGTATCGATA
*
7893876 CAATGTATCGATACATATTGTG-TGTATCGATA
1 CAATGTATCGATACATATTGGGATGTATCGATA
7893908 CAA
1 CAA
7893911 ATTTGGATAC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (33 bp):
CAATGTATCGATACATATTGGGATGTATCGATA
Found at i:7893989 original size:20 final size:21
Alignment explanation
Indices: 7893942--7893994 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
7893932 GCCAATGACT
**
7893942 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
*
7893963 AGTATCGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
7893983 TGTATCGATACA
1 TGTATCGATACA
7893995 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:7894000 original size:13 final size:13
Alignment explanation
Indices: 7893982--7894006 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7893972 ACATTTGGTC
7893982 ATGTATCGATACA
1 ATGTATCGATACA
7893995 ATGTATCGATAC
1 ATGTATCGATAC
7894007 TATGCAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:7896321 original size:20 final size:21
Alignment explanation
Indices: 7896292--7896332 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
7896282 TGTTTTTGTT
7896292 GATGATTTTG-A-TGAAAAAC
1 GATGATTTTGAAGTGAAAAAC
7896311 GATGTATTTTGAAGTGAAAAAC
1 GATG-ATTTTGAAGTGAAAAAC
7896333 AAGAAATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
21 1 0.05
22 8 0.42
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (21 bp):
GATGATTTTGAAGTGAAAAAC
Found at i:7896483 original size:13 final size:13
Alignment explanation
Indices: 7896465--7896502 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
7896455 ATAATCCCCT
*
7896465 TGTATCGATACAC
1 TGTATCGATACAA
*
7896478 TGTATCGATATAA
1 TGTATCGATACAA
7896491 TGTATCGATACA
1 TGTATCGATACA
7896503 GAGAATGCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:7902663 original size:20 final size:20
Alignment explanation
Indices: 7902638--7902703 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
7902628 TTACAAGCCA
7902638 ATGTATCGATACATTTTGGG
1 ATGTATCGATACATTTTGGG
7902658 ATGTATCGATACA-------
1 ATGTATCGATACATTTTGGG
7902671 ATGTATCGATACATTTTGGG
1 ATGTATCGATACATTTTGGG
7902691 ATGTATCGATACA
1 ATGTATCGATACA
7902704 ATGTATCGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 13 0.33
20 26 0.67
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTTTGGG
Found at i:7902676 original size:13 final size:13
Alignment explanation
Indices: 7902658--7902716 Score: 55
Period size: 13 Copynumber: 4.0 Consensus size: 13
7902648 ACATTTTGGG
7902658 ATGTATCGATACA
1 ATGTATCGATACA
7902671 ATGTATCGATACA
1 ATGTATCGATACA
7902684 TTTTGGGATGTATCGATACA
1 -------ATGTATCGATACA
7902704 ATGTATCGATACA
1 ATGTATCGATACA
7902717 TATTGTGTGT
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 26 0.67
20 13 0.33
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.34
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:7902678 original size:33 final size:33
Alignment explanation
Indices: 7902636--7902736 Score: 177
Period size: 33 Copynumber: 3.1 Consensus size: 33
7902626 CGTTACAAGC
7902636 CAATGTATCGATACATTTTGGGATGTATCGATA
1 CAATGTATCGATACATTTTGGGATGTATCGATA
7902669 CAATGTATCGATACATTTTGGGATGTATCGATA
1 CAATGTATCGATACATTTTGGGATGTATCGATA
* *
7902702 CAATGTATCGATACATATTGTG-TGTATCGATA
1 CAATGTATCGATACATTTTGGGATGTATCGATA
7902734 CAA
1 CAA
7902737 ATTTGGCTAC
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
32 13 0.20
33 53 0.80
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.36
Consensus pattern (33 bp):
CAATGTATCGATACATTTTGGGATGTATCGATA
Found at i:7905298 original size:21 final size:19
Alignment explanation
Indices: 7905268--7905307 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
7905258 ATATTACATA
7905268 TTATAATTATATTTAAATTTT
1 TTATAATTATA--TAAATTTT
*
7905289 TTATATTTATATAAATTTT
1 TTATAATTATATAAATTTT
7905308 AATACATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
21 10 0.56
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTATAATTATATAAATTTT
Found at i:7905528 original size:2 final size:2
Alignment explanation
Indices: 7905521--7905551 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7905511 TTTCTTGATC
7905521 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
7905552 CTGAGTTACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7910215 original size:16 final size:15
Alignment explanation
Indices: 7910196--7910251 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 15
7910186 AAAAAAATTA
7910196 TAAATATTAAAATTTT
1 TAAA-ATTAAAATTTT
*
7910212 TAAAATTTTAAATTTAT
1 TAAAA-TTAAAATTT-T
7910229 TAAATATT--AATTTT
1 TAAA-ATTAAAATTTT
7910243 TAAAATTAA
1 TAAAATTAA
7910252 TTATATAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
13 3 0.09
14 5 0.15
15 6 0.18
16 12 0.35
17 7 0.21
18 1 0.03
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TAAAATTAAAATTTT
Found at i:7910264 original size:31 final size:32
Alignment explanation
Indices: 7910194--7910280 Score: 83
Period size: 31 Copynumber: 2.6 Consensus size: 32
7910184 TTAAAAAAAT
7910194 TATAAATATTAAAATTTTTAAAATTTTAAATTTA
1 TATAAATATT-AAATTTTTAAAA-TTTAAATTTA
7910228 T-TAAATATT-AATTTTTAAAA-TT-AATTATA
1 TATAAATATTAAATTTTTAAAATTTAAATT-TA
7910257 TAATAAATTAAATTAAATTTTTAA
1 T-ATAAA-T--ATTAAATTTTTAA
7910281 TTCAATTTGT
Statistics
Matches: 46, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
28 4 0.09
29 5 0.11
31 15 0.33
32 1 0.02
33 8 0.17
34 4 0.09
35 9 0.20
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (32 bp):
TATAAATATTAAATTTTTAAAATTTAAATTTA
Found at i:7910625 original size:17 final size:17
Alignment explanation
Indices: 7910592--7910624 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7910582 TAGGCTCACC
*
7910592 TATATTATTTTTTAAAA
1 TATATTATTTTTAAAAA
7910609 TATA-TATTTTTAAAAA
1 TATATTATTTTTAAAAA
7910625 AATTTAATCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TATATTATTTTTAAAAA
Found at i:7912472 original size:27 final size:27
Alignment explanation
Indices: 7912448--7912512 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 27
7912438 TTATTAATGT
* *
7912448 TATTGTTATGTTAGTATTTTTTAATTA
1 TATTATTATATTAGTATTTTTTAATTA
7912475 TATTATTATATTAGTATTTTTTAAATTAA
1 TATTATTATATTAGTATTTTTT-AATT-A
*
7912504 TAATATTAT
1 TATTATTAT
7912513 TATAAATATA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 20 0.61
28 4 0.12
29 9 0.27
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (27 bp):
TATTATTATATTAGTATTTTTTAATTA
Found at i:7912826 original size:21 final size:23
Alignment explanation
Indices: 7912783--7912829 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
7912773 GAAATTTAAA
7912783 ATAATTAAACTTTTAAAATAATT
1 ATAATTAAACTTTTAAAATAATT
*
7912806 ATAATT-AATTTTTAAAA-AATT
1 ATAATTAAACTTTTAAAATAATT
7912827 ATA
1 ATA
7912830 CGATTATAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.30
22 10 0.43
23 6 0.26
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (23 bp):
ATAATTAAACTTTTAAAATAATT
Found at i:7912877 original size:43 final size:40
Alignment explanation
Indices: 7912801--7912882 Score: 128
Period size: 43 Copynumber: 2.0 Consensus size: 40
7912791 ACTTTTAAAA
*
7912801 TAATTATAATTAATTTTTAAAAAATTATACGATTATAACC
1 TAATTATAATTAATTTTTAAAAAATTAGACGATTATAACC
7912841 TAATTACTAATTAGATTTTTAAAATAATTAGACGATTATAAC
1 TAATTA-TAATTA-ATTTTTAAAA-AATTAGACGATTATAAC
7912883 TTAAATTAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
40 6 0.16
41 6 0.16
42 10 0.26
43 16 0.42
ACGTcount: A:0.46, C:0.07, G:0.05, T:0.41
Consensus pattern (40 bp):
TAATTATAATTAATTTTTAAAAAATTAGACGATTATAACC
Found at i:7913164 original size:40 final size:40
Alignment explanation
Indices: 7913120--7913195 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
7913110 AAATGTCAAT
*
7913120 ATAATATATATTAAAAAATTA-GAATATAATAATAATCCTA
1 ATAATAT-TATTAAAAAAATATGAATATAATAATAATCCTA
* *
7913160 ATAATATTATTAAAAAAATATTAATATTATAATAAT
1 ATAATATTATTAAAAAAATATGAATATAATAATAAT
7913196 AACAGTAAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
39 12 0.38
40 20 0.62
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (40 bp):
ATAATATTATTAAAAAAATATGAATATAATAATAATCCTA
Found at i:7913469 original size:9 final size:9
Alignment explanation
Indices: 7913457--7913502 Score: 58
Period size: 9 Copynumber: 5.1 Consensus size: 9
7913447 GAGAAAGGAT
*
7913457 GAAAAGAAA
1 GAAAAAAAA
7913466 G-AAAAAAA
1 GAAAAAAAA
7913474 GAAAAAAAA
1 GAAAAAAAA
7913483 GAAAGAAAAA
1 GAAA-AAAAA
*
7913493 GAAAAGAAA
1 GAAAAAAAA
7913502 G
1 G
7913503 GAGAAAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
8 7 0.21
9 17 0.52
10 9 0.27
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (9 bp):
GAAAAAAAA
Found at i:7913509 original size:17 final size:17
Alignment explanation
Indices: 7913448--7913509 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
7913438 GCAGGGAGAG
7913448 AGAAAGGATGAAAAG-AA
1 AGAAAGGA-GAAAAGAAA
**
7913465 AGAAAAAAAGAAAA-AAA
1 AG-AAAGGAGAAAAGAAA
7913482 AGAAA-GA-AAAAGAAA
1 AGAAAGGAGAAAAGAAA
7913497 AGAAAGGAGAAAA
1 AGAAAGGAGAAAA
7913510 AATTTACATA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
14 4 0.11
15 9 0.24
16 5 0.14
17 15 0.41
18 4 0.11
ACGTcount: A:0.76, C:0.00, G:0.23, T:0.02
Consensus pattern (17 bp):
AGAAAGGAGAAAAGAAA
Found at i:7913540 original size:13 final size:12
Alignment explanation
Indices: 7913518--7913546 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7913508 AAAATTTACA
7913518 TATTTAT-TTTT
1 TATTTATATTTT
7913529 TATTTATATTTT
1 TATTTATATTTT
7913541 TATTTA
1 TATTTA
7913547 AAATATTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TATTTATATTTT
Found at i:7914600 original size:24 final size:25
Alignment explanation
Indices: 7914572--7914628 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 25
7914562 AATAAATAAT
7914572 AATTATTTAA-TA-TAATTTAACTTA
1 AATTATTTAATTATTAATTTAA-TTA
*
7914596 AATTATGTAATTATTAATTTAATTA
1 AATTATTTAATTATTAATTTAATTA
7914621 AA-TATTTA
1 AATTATTTA
7914629 TAAATATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 14 0.48
25 7 0.24
26 8 0.28
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (25 bp):
AATTATTTAATTATTAATTTAATTA
Found at i:7914636 original size:26 final size:26
Alignment explanation
Indices: 7914572--7914638 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 26
7914562 AATAAATAAT
*
7914572 AATTAT-TTAATA-TAATTTAACTTA
1 AATTATATAAATATTAATTTAACTTA
* *
7914596 AATTATGTAATTATTAATTTAA-TTA
1 AATTATATAAATATTAATTTAACTTA
*
7914621 AATATTTATAAATATTAA
1 AAT-TATATAAATATTAA
7914639 AAATCTACTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
24 6 0.17
25 10 0.29
26 19 0.54
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (26 bp):
AATTATATAAATATTAATTTAACTTA
Found at i:7916617 original size:19 final size:17
Alignment explanation
Indices: 7916587--7916625 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
7916577 TACATTATAT
7916587 TATTTTAAATTTATTAA
1 TATTTTAAATTTATTAA
*
7916604 TATTTTGAATATTTTTTAA
1 TATTTT-AA-ATTTATTAA
7916623 TAT
1 TAT
7916626 ATAATATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 2 0.11
19 11 0.58
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
TATTTTAAATTTATTAA
Found at i:7916630 original size:26 final size:29
Alignment explanation
Indices: 7916583--7916635 Score: 76
Period size: 26 Copynumber: 1.9 Consensus size: 29
7916573 ATGTTACATT
*
7916583 ATATTATTTTAAATTTATTAATATTTTGA
1 ATATTATTTTAAATATATTAATATTTTGA
7916612 ATATT-TTTT-AATATA-TAATATTTT
1 ATATTATTTTAAATATATTAATATTTT
7916636 TAAATATCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 9 0.39
27 5 0.22
28 4 0.17
29 5 0.22
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (29 bp):
ATATTATTTTAAATATATTAATATTTTGA
Found at i:7916636 original size:27 final size:29
Alignment explanation
Indices: 7916583--7916642 Score: 72
Period size: 27 Copynumber: 2.1 Consensus size: 29
7916573 ATGTTACATT
* *
7916583 ATATTATTTTAAATTTATTAATATTTTGA
1 ATATTATTTTAAATATATTAATATTTTAA
7916612 ATATT-TTTT-AATATA-TAATATTTTTAA
1 ATATTATTTTAAATATATTAATA-TTTTAA
7916639 ATAT
1 ATAT
7916643 CGAATAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 5 0.18
27 14 0.50
28 4 0.14
29 5 0.18
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (29 bp):
ATATTATTTTAAATATATTAATATTTTAA
Found at i:7916648 original size:17 final size:17
Alignment explanation
Indices: 7916610--7916648 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
7916600 TTAATATTTT
*
7916610 GAATATTTTTTAATATA
1 GAATATTTTTAAATATA
* *
7916627 TAATATTTTTAAATATC
1 GAATATTTTTAAATATA
7916644 GAATA
1 GAATA
7916649 AATAAGATTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (17 bp):
GAATATTTTTAAATATA
Found at i:7917049 original size:21 final size:21
Alignment explanation
Indices: 7917025--7917081 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
7917015 AAAAAATTTA
* *
7917025 AATGTATCGATACATTTTTTG
1 AATGTATCGATACATTTGTGG
7917046 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTGG
7917067 AATGTATCGATACAT
1 AATGTATCGATACAT
7917082 CCTACAAATG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.40
Consensus pattern (21 bp):
AATGTATCGATACATTTGTGG
Found at i:7917161 original size:19 final size:19
Alignment explanation
Indices: 7917137--7917204 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
7917127 AATTCAACAA
7917137 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
7917156 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
7917171 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
7917188 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
7917205 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:7917176 original size:13 final size:13
Alignment explanation
Indices: 7917158--7917182 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7917148 ACATAAGTTT
7917158 TGTATCGATACAA
1 TGTATCGATACAA
7917171 TGTATCGATACA
1 TGTATCGATACA
7917183 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:7917180 original size:32 final size:32
Alignment explanation
Indices: 7917139--7917201 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
7917129 TTCAACAATT
*
7917139 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
7917171 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
7917202 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:7917262 original size:13 final size:13
Alignment explanation
Indices: 7917244--7917269 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7917234 CATTTTTCTG
7917244 TGTATCGATACAT
1 TGTATCGATACAT
7917257 TGTATCGATACAT
1 TGTATCGATACAT
7917270 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7917266 original size:33 final size:33
Alignment explanation
Indices: 7917224--7917290 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
7917214 GCCAAGGAAA
***
7917224 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
7917257 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
7917290 T
1 T
7917291 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:7919828 original size:52 final size:51
Alignment explanation
Indices: 7919755--7919924 Score: 186
Period size: 52 Copynumber: 3.3 Consensus size: 51
7919745 TTATTTTCGA
*
7919755 GGGGATACTCCAACTCCGGTTTTATCGTT-AAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACTCCGGTTTTAT--TTCAAAACACCAATTTTTCCACAATC
* **
7919807 GGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCCAA-TTTTCCTTTAATC
1 GGGGATACTCCAACTCC-GGTTTTA-TTTCAAAACACCAATTTTTCC-ACAATC
* *
7919859 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT-CACAATC
1 GGGGATACTCCAACTCCGGTTTTATTT-C-AAAACACCAATTTTTCCACAATC
*
7919911 GAGGATACTCCAAC
1 GGGGATACTCCAAC
7919925 CCCGTTATTT
Statistics
Matches: 100, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
51 14 0.14
52 69 0.69
53 13 0.13
54 4 0.04
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (51 bp):
GGGGATACTCCAACTCCGGTTTTATTTCAAAACACCAATTTTTCCACAATC
Found at i:7920012 original size:52 final size:51
Alignment explanation
Indices: 7919939--7920108 Score: 186
Period size: 52 Copynumber: 3.3 Consensus size: 51
7919929 TTATTTTCGA
*
7919939 GGGGATACTCCAACTCCGGTTTTATCGTT-AAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACTCCGGTTTTAT--TTCAAAACACCAATTTTTCCACAATC
* **
7919991 GGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCCAA-TTTTCCTTTAATC
1 GGGGATACTCCAACTCC-GGTTTTA-TTTCAAAACACCAATTTTTCC-ACAATC
* *
7920043 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT-CACAATC
1 GGGGATACTCCAACTCCGGTTTTATTT-C-AAAACACCAATTTTTCCACAATC
*
7920095 GAGGATACTCCAAC
1 GGGGATACTCCAAC
7920109 CTCGTTATTT
Statistics
Matches: 100, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
51 14 0.14
52 69 0.69
53 13 0.13
54 4 0.04
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (51 bp):
GGGGATACTCCAACTCCGGTTTTATTTCAAAACACCAATTTTTCCACAATC
Found at i:7920038 original size:184 final size:184
Alignment explanation
Indices: 7919724--7920136 Score: 776
Period size: 184 Copynumber: 2.2 Consensus size: 184
7919714 CCCGTTAATC
*
7919724 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACTCCGGTTTTATCGTTAAAAC
1 ATCGAGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACTCCGGTTTTATCGTTAAAAC
7919789 ACTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTT
66 ACTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTT
7919854 TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACA
131 TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACA
7919908 ATCGAGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACTCCGGTTTTATCGTTAAAAC
1 ATCGAGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACTCCGGTTTTATCGTTAAAAC
7919973 ACTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTT
66 ACTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTT
7920038 TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACA
131 TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACA
*
7920092 ATCGAGGATACTCCAACCTCGTTA-TTTC-ATCGGGGATACTCCAAC
1 ATCGAGGATACTCCAACCCCGTTATTTTCGA--GGGGATACTCCAAC
7920137 CCCGTTACTT
Statistics
Matches: 225, Mismatches: 2, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
182 1 0.00
183 4 0.02
184 220 0.98
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (184 bp):
ATCGAGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACTCCGGTTTTATCGTTAAAAC
ACTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTT
TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACA
Found at i:7920049 original size:132 final size:132
Alignment explanation
Indices: 7919807--7920056 Score: 303
Period size: 132 Copynumber: 1.9 Consensus size: 132
7919797 TTCCACAATC
* * **
7919807 GGGGATACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGGGATACTCCAA
1 GGGGATACTCCAATCCTGGTTTTATGTTCAAAACACCAATTTTCCTACAATCGGGGATACTCCAA
* *
7919872 CTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACTCCAACCCCGTTATTTTC
66 CTCCGATTTTATTTCCAAAAACACCAATTTTCCACAATCGAGGATACTCCAACCCCGTTATTTTC
7919937 GA
131 GA
*
7919939 GGGGATACTCCAACTCC-GGTTTTATCGTT-AAAACACTAATTTTTCC-ACAATCGGGGATACTC
1 GGGGATACTCCAA-TCCTGGTTTTAT-GTTCAAAACACCAA-TTTTCCTACAATCGGGGATACTC
* * * ** *
7920001 CAA-TCCTGGTTTTATTTTC-AAAACGCCAATTTTCCTTTAATCGGGGATACTCCAAC
63 CAACTCC-GATTTTATTTCCAAAAACACCAATTTTCC-ACAATCGAGGATACTCCAAC
7920057 TCCGATTTTA
Statistics
Matches: 100, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
131 16 0.16
132 73 0.73
133 11 0.11
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.34
Consensus pattern (132 bp):
GGGGATACTCCAATCCTGGTTTTATGTTCAAAACACCAATTTTCCTACAATCGGGGATACTCCAA
CTCCGATTTTATTTCCAAAAACACCAATTTTCCACAATCGAGGATACTCCAACCCCGTTATTTTC
GA
Found at i:7920128 original size:28 final size:28
Alignment explanation
Indices: 7920092--7920168 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
7920082 ATTTTTCACA
* * *
7920092 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
7920120 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
***
7920148 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
7920169 GCTTTATTCC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:7922424 original size:9 final size:9
Alignment explanation
Indices: 7922393--7922453 Score: 52
Period size: 9 Copynumber: 6.7 Consensus size: 9
7922383 AAAATTATAT
7922393 TATTTAATTA
1 TATTT-ATTA
* *
7922403 AATTTTTTAA
1 TATTTATT-A
7922413 TATTTATTA
1 TATTTATTA
*
7922422 TATTTAATA
1 TATTTATTA
* *
7922431 -ATATAGTA
1 TATTTATTA
7922439 TATTTATTA
1 TATTTATTA
7922448 TATTTA
1 TATTTA
7922454 ATAACATAAT
Statistics
Matches: 40, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
8 6 0.15
9 23 0.57
10 11 0.28
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (9 bp):
TATTTATTA
Found at i:7922474 original size:26 final size:25
Alignment explanation
Indices: 7922412--7922468 Score: 71
Period size: 26 Copynumber: 2.3 Consensus size: 25
7922402 AAATTTTTTA
* *
7922412 ATATTTATTATATTTAATAATATAG
1 ATATTAATTATATTTAATAACATAG
*
7922437 TATATTTATTATATTTAATAACATA-
1 -ATATTAATTATATTTAATAACATAG
7922462 ATATTAA
1 ATATTAA
7922469 AATTATTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 6 0.21
26 23 0.79
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (25 bp):
ATATTAATTATATTTAATAACATAG
Found at i:7922483 original size:20 final size:22
Alignment explanation
Indices: 7922460--7922502 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
7922450 TTTAATAACA
7922460 TAATA-TTAAAATTA-TTTATC
1 TAATATTTAAAATTATTTTATC
*
7922480 TAATATTTAAATTTATTTTATC
1 TAATATTTAAAATTATTTTATC
7922502 T
1 T
7922503 TAACCAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 8 0.40
22 7 0.35
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.56
Consensus pattern (22 bp):
TAATATTTAAAATTATTTTATC
Found at i:7922755 original size:15 final size:16
Alignment explanation
Indices: 7922735--7922768 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
7922725 TCGAATGACA
*
7922735 TATATTTAA-TTCATT
1 TATATTTAAGTTAATT
7922750 TATATTTAAGTTAATT
1 TATATTTAAGTTAATT
7922766 TAT
1 TAT
7922769 GAATTGTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (16 bp):
TATATTTAAGTTAATT
Found at i:7923320 original size:120 final size:119
Alignment explanation
Indices: 7923195--7923416 Score: 286
Period size: 120 Copynumber: 1.9 Consensus size: 119
7923185 ATTATTACCA
* * *
7923195 ATTAATATT-TTTTCAT-TCATTGAATTTAAATTTAATATAATATATTAATTTTATTCATTATTT
1 ATTAATATTATTTTAATCTCATT-AA-TTAAATTTAATATAATATATTAATTTCATTCATTA-CT
*
7923258 TTTTTAAATTTATTTCAACTCTTTGTAATAGAATTTGAATAGTTAAATTACTAATAT
63 TTTTGAAATTTATTTCAACTCTTTGTAATAGAATTTGAATAGTTAAATTACTAATAT
* * *
7923315 ATTAATTTTATTTTAATCTTATTCATTAAATTTAATATAATATATTAATTTCATTCATTACTTTT
1 ATTAATATTATTTTAATCTCATTAATTAAATTTAATATAATATATTAATTTCATTCATTACTTTT
* * * * * *
7923380 TGAATTTTATTTTAATTTTTTTTCATAGAATTTGAAT
66 TGAAATTTATTTCAACTCTTTGTAATAGAATTTGAAT
7923417 GACTAAATTA
Statistics
Matches: 87, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 34 0.39
120 42 0.48
121 7 0.08
122 4 0.05
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (119 bp):
ATTAATATTATTTTAATCTCATTAATTAAATTTAATATAATATATTAATTTCATTCATTACTTTT
TGAAATTTATTTCAACTCTTTGTAATAGAATTTGAATAGTTAAATTACTAATAT
Found at i:7923631 original size:20 final size:20
Alignment explanation
Indices: 7923595--7923634 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
7923585 ATAATTTATT
7923595 AATTTCTTTTATTACTCTTTA
1 AATTTCTTTTA-TACTCTTTA
7923616 AATTTCATTTTA-ACTCTTT
1 AATTTC-TTTTATACTCTTT
7923635 TTAAGAGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 6 0.33
22 5 0.28
ACGTcount: A:0.25, C:0.15, G:0.00, T:0.60
Consensus pattern (20 bp):
AATTTCTTTTATACTCTTTA
Found at i:7927206 original size:32 final size:32
Alignment explanation
Indices: 7927115--7927206 Score: 84
Period size: 32 Copynumber: 2.9 Consensus size: 32
7927105 TCTTCAAATC
* *
7927115 ATTAAAAAT-TAATGTTAAGTGAT-AAAATTCA
1 ATTAAAAATCAAATTTTAA-TGATAAAAATTCA
* * *
7927146 ATCAAAAATCAAAATTTGA-G-TAACAAAATTCA
1 ATTAAAAATCAAATTTTAATGAT-A-AAAATTCA
7927178 ATTAAAAATCAAATTTTAATGATAAAAAT
1 ATTAAAAATCAAATTTTAATGATAAAAAT
7927207 AAATAAATAA
Statistics
Matches: 47, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
29 1 0.02
30 1 0.02
31 8 0.17
32 34 0.72
33 2 0.04
34 1 0.02
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.32
Consensus pattern (32 bp):
ATTAAAAATCAAATTTTAATGATAAAAATTCA
Found at i:7927557 original size:12 final size:12
Alignment explanation
Indices: 7927542--7927602 Score: 70
Period size: 12 Copynumber: 5.1 Consensus size: 12
7927532 GAATTTTTTG
*
7927542 CATCCTTTTTCT
1 CATCTTTTTTCT
7927554 CATCTTTTTTCT
1 CATCTTTTTTCT
7927566 CATCTTTTTTCT
1 CATCTTTTTTCT
*
7927578 C-TGGTTTTTTCT
1 CAT-CTTTTTTCT
* *
7927590 CCTGTTTTTTCT
1 CATCTTTTTTCT
7927602 C
1 C
7927603 TTCGACACTC
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
11 1 0.02
12 43 0.96
13 1 0.02
ACGTcount: A:0.05, C:0.26, G:0.05, T:0.64
Consensus pattern (12 bp):
CATCTTTTTTCT
Found at i:7927897 original size:2 final size:2
Alignment explanation
Indices: 7927892--7927928 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
7927882 ATATATCTAT
7927892 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
7927929 AGGAAAGAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7928542 original size:19 final size:20
Alignment explanation
Indices: 7928499--7928547 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
7928489 AAATTTTAAT
*
7928499 TTAAATTTAAATATAAATAA
1 TTAAATTTAAATATAAAGAA
* *
7928519 TTAAATTTAAA-ATCAAGCA
1 TTAAATTTAAATATAAAGAA
*
7928538 TTAAAATTAA
1 TTAAATTTAA
7928548 GTAAACGAGC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (20 bp):
TTAAATTTAAATATAAAGAA
Found at i:7929052 original size:5 final size:5
Alignment explanation
Indices: 7929042--7929071 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
7929032 CAGGTAAATG
7929042 ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA
7929072 TACATATGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:7931636 original size:2 final size:2
Alignment explanation
Indices: 7931631--7931660 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7931621 AAAAAAAGTG
7931631 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7931661 TAGCTATTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7933828 original size:2 final size:2
Alignment explanation
Indices: 7933821--7933853 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
7933811 TTTTTCCTCA
*
7933821 AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7933854 ACGTGGAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:7935101 original size:13 final size:13
Alignment explanation
Indices: 7935083--7935108 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7935073 TACACCAAGT
7935083 ATGTATCGATACA
1 ATGTATCGATACA
7935096 ATGTATCGATACA
1 ATGTATCGATACA
7935109 CCAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Done.