Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold64
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7997333
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 95991 characters in sequence are not A, C, G, or T
File 8 of 45
Found at i:1520042 original size:16 final size:16
Alignment explanation
Indices: 1520015--1520096 Score: 57
Period size: 16 Copynumber: 5.2 Consensus size: 16
1520005 TATATGTAAA
1520015 TATAAA-ATTTAAAAT
1 TATAAATATTTAAAAT
*
1520030 TATAAATATTTAATAT
1 TATAAATATTTAAAAT
1520046 CTA-AAAT-TTTAAAA-
1 -TATAAATATTTAAAAT
* *
1520060 TACCAAATAATT-AAAT
1 TA-TAAATATTTAAAAT
* *
1520076 ATAAAAATATTTAAAAA
1 -TATAAATATTTAAAAT
1520093 TATA
1 TATA
1520097 GTGAATTATT
Statistics
Matches: 52, Mismatches: 7, Indels: 15
0.70 0.09 0.20
Matches are distributed among these distances:
13 2 0.04
15 19 0.37
16 24 0.46
17 7 0.13
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.38
Consensus pattern (16 bp):
TATAAATATTTAAAAT
Found at i:1520068 original size:31 final size:31
Alignment explanation
Indices: 1520011--1520091 Score: 80
Period size: 31 Copynumber: 2.6 Consensus size: 31
1520001 TGTTTATATG
*
1520011 TAAATA-TAAAA-TTTAAAATTATAAAT-AT
1 TAAATATTAAAATTTTAAAATTACAAATAAT
*
1520039 TTAATATCTAAAATTTTAAAA-TACCAAATAAT
1 TAAATAT-TAAAATTTTAAAATTA-CAAATAAT
*
1520071 TAAATATAAAAATATTTAAAA
1 TAAATATTAAAAT-TTTAAAA
1520092 ATATAGTGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
28 5 0.12
30 7 0.16
31 16 0.37
32 15 0.35
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (31 bp):
TAAATATTAAAATTTTAAAATTACAAATAAT
Found at i:1521455 original size:13 final size:13
Alignment explanation
Indices: 1521413--1521470 Score: 57
Period size: 13 Copynumber: 4.6 Consensus size: 13
1521403 AGTATAATTA
1521413 AAAATTTAAAAAT
1 AAAATTTAAAAAT
* * *
1521426 GAGATATAAAAAT
1 AAAATTTAAAAAT
1521439 --AATTTAAAAAT
1 AAAATTTAAAAAT
*
1521450 AAAATTTAAATAT
1 AAAATTTAAAAAT
*
1521463 CAAATTTA
1 AAAATTTA
1521471 TTAAACGTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
11 9 0.25
13 27 0.75
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (13 bp):
AAAATTTAAAAAT
Found at i:1522252 original size:14 final size:14
Alignment explanation
Indices: 1522233--1522265 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
1522223 TACAAATTAC
1522233 ATAATATATATAAT
1 ATAATATATATAAT
*
1522247 ATAATATATATTAT
1 ATAATATATATAAT
1522261 ATAAT
1 ATAAT
1522266 TGAAAACGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATAATATATATAAT
Found at i:1523875 original size:2 final size:2
Alignment explanation
Indices: 1523868--1523897 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
1523858 TCGAAATACT
1523868 TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1523898 GTTAAGATAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1530048 original size:2 final size:2
Alignment explanation
Indices: 1530041--1530066 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1530031 GCAAAAGAAT
1530041 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
1530067 TATATATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:1530071 original size:2 final size:2
Alignment explanation
Indices: 1530066--1530092 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1530056 ACACACACAC
1530066 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1530093 ATACATTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1532024 original size:2 final size:2
Alignment explanation
Indices: 1532011--1532042 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
1532001 CTTCAACAAA
*
1532011 AC AC AC AG AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1532043 CCTAGACGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.47, G:0.03, T:0.00
Consensus pattern (2 bp):
AC
Found at i:1532709 original size:20 final size:20
Alignment explanation
Indices: 1532671--1532722 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 20
1532661 GAAGGGAGAT
*
1532671 AAATATTTTAAAATCAAATAA
1 AAAT-TTTTAAAATAAAATAA
*
1532692 ATAATTTTTAAAA-AAAATTA
1 A-AATTTTTAAAATAAAATAA
*
1532712 AAATATTTAAA
1 AAATTTTTAAA
1532723 GATATAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 9 0.33
20 6 0.22
21 9 0.33
22 3 0.11
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (20 bp):
AAATTTTTAAAATAAAATAA
Found at i:1534525 original size:2 final size:2
Alignment explanation
Indices: 1534508--1534570 Score: 58
Period size: 2 Copynumber: 31.0 Consensus size: 2
1534498 TATCATCATT
* * *
1534508 TA TA TA TT TA TT TA TA TA TA TA TA TA GTA TCA -A TA CA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA -TA T-A TA TA TA TA TA TA
1534551 TA TA TA TA TA -A TA TGA TA TA
1 TA TA TA TA TA TA TA T-A TA TA
1534571 ACATACAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
1 2 0.04
2 43 0.86
3 5 0.10
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (2 bp):
TA
Found at i:1536440 original size:3 final size:3
Alignment explanation
Indices: 1536427--1536461 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
1536417 AAGCGAAAAC
*
1536427 ATT AGT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1536462 ATGCACATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:1538521 original size:28 final size:27
Alignment explanation
Indices: 1538486--1538540 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 27
1538476 ATTAAATAAA
1538486 AATTTATAAA-T-ATTAAAATTTAAAATT
1 AATTTATAAATTGATT-AAA-TTAAAATT
1538513 AATTATATAAATTGATTAAATTAAAATT
1 AATT-TATAAATTGATTAAATTAAAATT
1538541 TACTATAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
27 4 0.16
28 14 0.56
29 4 0.16
30 3 0.12
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (27 bp):
AATTTATAAATTGATTAAATTAAAATT
Found at i:1539426 original size:60 final size:60
Alignment explanation
Indices: 1539315--1539427 Score: 149
Period size: 59 Copynumber: 1.9 Consensus size: 60
1539305 TCATTCATGA
*
1539315 CTTATAAAAGTTACATTGATCCTATGCAACCTTTATTAATATTTAATTTTCATCTACTAT
1 CTTATAAAAGTTACATTGATCATATGCAACCTTTATTAATATTTAATTTTCATCTACTAT
* ** *
1539375 CTTA-AAAAGTTACATTTATCATATGTTACTTTTGATTAATA-TTATATTTTCAT
1 CTTATAAAAGTTACATTGATCATATGCAACCTTT-ATTAATATTTA-ATTTTCAT
1539428 TTATAACTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
59 27 0.59
60 19 0.41
ACGTcount: A:0.34, C:0.13, G:0.05, T:0.48
Consensus pattern (60 bp):
CTTATAAAAGTTACATTGATCATATGCAACCTTTATTAATATTTAATTTTCATCTACTAT
Found at i:1539444 original size:60 final size:59
Alignment explanation
Indices: 1539286--1539445 Score: 139
Period size: 59 Copynumber: 2.7 Consensus size: 59
1539276 GATCTTAAAC
* * * * *
1539286 CTTTTG-TTTATATTT-TATTTCATTCATGACTTATAAAAGTTACATTGATCCTATGCAA
1 CTTTTGATTAATATTTAT-TTTCATTTATAACTTTTAAAAGTTACATTGATCATATGCAA
* * * * * **
1539344 CCTTT-ATTAATATTTAATTTTCATCTACTATC-TTAAAAAGTTACATTTATCATATGTTA
1 CTTTTGATTAATATTT-ATTTTCATTTA-TAACTTTTAAAAGTTACATTGATCATATGCAA
*
1539403 CTTTTGATTAATATTATATTTTCATTTATAACTTTTGAAAGTT
1 CTTTTGATTAATATT-TATTTTCATTTATAACTTTTAAAAGTT
1539446 TAATATACCA
Statistics
Matches: 78, Mismatches: 17, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
58 12 0.15
59 35 0.45
60 30 0.38
61 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.06, T:0.51
Consensus pattern (59 bp):
CTTTTGATTAATATTTATTTTCATTTATAACTTTTAAAAGTTACATTGATCATATGCAA
Found at i:1539665 original size:26 final size:26
Alignment explanation
Indices: 1539610--1539665 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
1539600 ATATGTTAAT
* * **
1539610 TATTTATATTTAAAAAATAATAAATT
1 TATTTATATGTAAAAAATAAAAAAGA
*
1539636 TATTTTTATGTAAAAAATAAAAAAGA
1 TATTTATATGTAAAAAATAAAAAAGA
1539662 TATT
1 TATT
1539666 AATAATTTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43
Consensus pattern (26 bp):
TATTTATATGTAAAAAATAAAAAAGA
Found at i:1539745 original size:14 final size:14
Alignment explanation
Indices: 1539726--1539774 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 14
1539716 ATAAAATCAT
1539726 ATATTTTTTAAAAA
1 ATATTTTTTAAAAA
1539740 ATATTTTTT--AAA
1 ATATTTTTTAAAAA
1539752 ATATTTTTTGAAAGAA
1 ATATTTTTT-AAA-AA
*
1539768 ACATTTT
1 ATATTTT
1539775 AAAGATGTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
12 12 0.40
14 9 0.30
15 1 0.03
16 8 0.27
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (14 bp):
ATATTTTTTAAAAA
Found at i:1539817 original size:18 final size:20
Alignment explanation
Indices: 1539796--1539836 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
1539786 TAACTTATAT
1539796 AAAA-CATATTT-TTAGAAA
1 AAAATCATATTTATTAGAAA
*
1539814 AAAATTCATATTTATTTGAAA
1 AAAA-TCATATTTATTAGAAA
1539835 AA
1 AA
1539837 TTGAAGAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
18 4 0.21
20 7 0.37
21 8 0.42
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.37
Consensus pattern (20 bp):
AAAATCATATTTATTAGAAA
Found at i:1540366 original size:18 final size:18
Alignment explanation
Indices: 1540343--1540381 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
1540333 AAAATATGAT
1540343 AATAATAAATATATTAAA
1 AATAATAAATATATTAAA
* * *
1540361 AATAATTAATTTTTTAAA
1 AATAATAAATATATTAAA
1540379 AAT
1 AAT
1540382 TAAAAAATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
AATAATAAATATATTAAA
Found at i:1540471 original size:19 final size:21
Alignment explanation
Indices: 1540428--1540471 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
1540418 ATAATTAAAT
* *
1540428 TTAATTAAAAAATATATTATT
1 TTAATTAAAAAATATACTATA
1540449 TTAATT-AAAAAT-TACTATA
1 TTAATTAAAAAATATACTATA
1540468 TTAA
1 TTAA
1540472 ATTATGATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 9 0.43
20 6 0.29
21 6 0.29
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (21 bp):
TTAATTAAAAAATATACTATA
Found at i:1541950 original size:11 final size:11
Alignment explanation
Indices: 1541934--1542099 Score: 80
Period size: 11 Copynumber: 15.2 Consensus size: 11
1541924 TAATTAGAGA
1541934 ATTTATATTAT
1 ATTTATATTAT
1541945 ATTTATATTAT
1 ATTTATATTAT
1541956 -TTT-TA-TAT
1 ATTTATATTAT
*
1541964 A-TTATAGATAT
1 ATTTATA-TTAT
1541975 ATTTAAAATATTAT
1 ATTT---ATATTAT
* * *
1541989 AGTTATATAAA
1 ATTTATATTAT
1542000 ATTTA-A-TAT
1 ATTTATATTAT
*
1542009 ATTAATA-TAT
1 ATTTATATTAT
*
1542019 AATTTTTATTAT
1 -ATTTATATTAT
* *
1542031 ATATA-ATTTT
1 ATTTATATTAT
*
1542041 A-ATATATTTAT
1 ATTTATA-TTAT
*
1542052 ATTTTAATATCAT
1 A-TTT-ATATTAT
1542065 ATTTATATTAT
1 ATTTATATTAT
*
1542076 TTTTATATTAT
1 ATTTATATTAT
* *
1542087 GTTTATCTTAT
1 ATTTATATTAT
1542098 AT
1 AT
1542100 AATTTTATCT
Statistics
Matches: 118, Mismatches: 21, Indels: 32
0.69 0.12 0.19
Matches are distributed among these distances:
8 5 0.04
9 12 0.10
10 14 0.12
11 62 0.53
12 8 0.07
13 5 0.04
14 9 0.08
15 3 0.03
ACGTcount: A:0.39, C:0.01, G:0.02, T:0.58
Consensus pattern (11 bp):
ATTTATATTAT
Found at i:1542001 original size:18 final size:20
Alignment explanation
Indices: 1541962--1542001 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
1541952 TTATTTTTAT
*
1541962 ATATTATAGATATATTTAAA
1 ATATTATAGATATATATAAA
1541982 ATATTATAG-T-TATATAAA
1 ATATTATAGATATATATAAA
1542000 AT
1 AT
1542002 TTAATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
19 1 0.05
20 9 0.47
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (20 bp):
ATATTATAGATATATATAAA
Found at i:1544338 original size:25 final size:25
Alignment explanation
Indices: 1544296--1544381 Score: 68
Period size: 25 Copynumber: 3.3 Consensus size: 25
1544286 ATAAAATAAA
*
1544296 AATAAAAATATATT-AAAATTTATAT
1 AATATAAAT-TATTAAAAATTTATAT
* *
1544321 AATATAAATTATTAAAAAATTAAAT
1 AATATAAATTATTAAAAATTTATAT
* *
1544346 -ATATAATATTTTTAAATAAATATATAT
1 AATATAA-ATTATT-AA-AAATTTATAT
1544373 AAATATAAA
1 -AATATAAA
1544382 ATAAATATAT
Statistics
Matches: 48, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
24 10 0.21
25 22 0.46
26 2 0.04
27 7 0.15
28 1 0.02
29 6 0.12
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (25 bp):
AATATAAATTATTAAAAATTTATAT
Found at i:1545943 original size:2 final size:2
Alignment explanation
Indices: 1545936--1545973 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
1545926 CCTTTATTCT
*
1545936 TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1545974 ACGTTGACTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:1547083 original size:9 final size:9
Alignment explanation
Indices: 1547071--1547150 Score: 56
Period size: 9 Copynumber: 8.7 Consensus size: 9
1547061 GGATTTAAAA
1547071 ATTTTATAT
1 ATTTTATAT
1547080 ATTTT-TATT
1 ATTTTATA-T
1547089 ATTTT-TAT
1 ATTTTATAT
*
1547097 ATTTTTTAT
1 ATTTTATAT
* *
1547106 ATTATAAAT
1 ATTTTATAT
*
1547115 ATGTTTTTGAT
1 AT-TTTAT-AT
*
1547126 ATTATATAT
1 ATTTTATAT
*
1547135 ATTTATATAA
1 ATTT-TATAT
1547145 ATTTTA
1 ATTTTA
1547151 ACATATTAAT
Statistics
Matches: 56, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
8 8 0.14
9 31 0.55
10 13 0.23
11 4 0.07
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.64
Consensus pattern (9 bp):
ATTTTATAT
Found at i:1547116 original size:18 final size:19
Alignment explanation
Indices: 1547095--1547138 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
1547085 TATTATTTTT
1547095 ATATTTTTT-ATATTATAA
1 ATATTTTTTGATATTATAA
*
1547113 ATATGTTTTTGATATTATAT
1 ATAT-TTTTTGATATTATAA
1547133 ATATTT
1 ATATTT
1547139 ATATAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 4 0.17
19 7 0.30
20 12 0.52
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (19 bp):
ATATTTTTTGATATTATAA
Found at i:1547256 original size:29 final size:29
Alignment explanation
Indices: 1547198--1547265 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
1547188 TTCTTATGTT
* *
1547198 TATTTTATTTTTTATTTCATATTATTTTA
1 TATTTTATTTTTTATATCATATTATATTA
1547227 TATTTTAATTTTTTTATATCATA-TA-ATTA
1 TATTTT-A-TTTTTTATATCATATTATATTA
*
1547256 TATTATATTT
1 TATTTTATTT
1547266 AAGATTATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
27 3 0.09
28 1 0.03
29 14 0.41
30 3 0.09
31 13 0.38
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (29 bp):
TATTTTATTTTTTATATCATATTATATTA
Found at i:1554051 original size:18 final size:18
Alignment explanation
Indices: 1554025--1554062 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
1554015 TTATTTTTAT
*
1554025 TAAATTTAAATATATATA
1 TAAAATTAAATATATATA
*
1554043 TAAAATTAATTATATATA
1 TAAAATTAAATATATATA
1554061 TA
1 TA
1554063 TATTTTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TAAAATTAAATATATATA
Found at i:1559104 original size:18 final size:20
Alignment explanation
Indices: 1559081--1559137 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
1559071 TATTTAATTA
1559081 TATTTAAA-AAA-AATTAAT
1 TATTTAAATAAATAATTAAT
*
1559099 TATTTATAATAAATAATTTAT
1 TATTTA-AATAAATAATTAAT
1559120 T-TTTAAATAATATAATTA
1 TATTTAAATAA-ATAATTA
1559138 TATAACATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 6 0.18
19 7 0.21
20 13 0.39
21 7 0.21
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TATTTAAATAAATAATTAAT
Found at i:1560164 original size:18 final size:18
Alignment explanation
Indices: 1560141--1560184 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
1560131 TGGTACATGC
1560141 TATAAT-TAAAATATAAAA
1 TATAATATAAAA-ATAAAA
1560159 TATAATATAAAAATAAAA
1 TATAATATAAAAATAAAA
1560177 TA-AATATA
1 TATAATATA
1560185 TACAAATGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.24
18 14 0.56
19 5 0.20
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
TATAATATAAAAATAAAA
Found at i:1560185 original size:19 final size:18
Alignment explanation
Indices: 1560147--1560191 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
1560137 ATGCTATAAT
*
1560147 TAAAATATAAAATATAATA
1 TAAAA-ATAAAATAAAATA
1560166 TAAAAATAAAATAAATATA
1 TAAAAATAAAATAAA-ATA
*
1560185 TACAAAT
1 TAAAAAT
1560192 GTTAAAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAAAATAAAATAAAATA
Found at i:1562476 original size:19 final size:20
Alignment explanation
Indices: 1562448--1562485 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
1562438 TATAATTAAA
1562448 ATTTAATAAA-AATATTTTT
1 ATTTAATAAATAATATTTTT
*
1562467 ATTTATTAAATAATATTTT
1 ATTTAATAAATAATATTTT
1562486 AAATAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTTAATAAATAATATTTTT
Found at i:1562483 original size:48 final size:49
Alignment explanation
Indices: 1562407--1562500 Score: 122
Period size: 48 Copynumber: 1.9 Consensus size: 49
1562397 AAAATATTTA
* *
1562407 AAAAATATTTTTATTAATATTTATATATTTT-TAT-AATTAAAATTTAAT
1 AAAAATATTTTTATT-ATATTAATATATTTTAAATAAATTAAAATTTAAT
1562455 AAAAATATTTTTATT-TATTAAATAATATTTTAAATAAATTAAAATT
1 AAAAATATTTTTATTATATT-AAT-ATATTTTAAATAAATTAAAATT
1562501 AATTTAAATT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
46 4 0.10
47 2 0.05
48 22 0.55
49 2 0.05
50 10 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (49 bp):
AAAAATATTTTTATTATATTAATATATTTTAAATAAATTAAAATTTAAT
Found at i:1562843 original size:23 final size:26
Alignment explanation
Indices: 1562813--1562867 Score: 80
Period size: 24 Copynumber: 2.2 Consensus size: 26
1562803 ATACTATTAG
1562813 TAAAAT-AAATTATTT-TATTT-TAT
1 TAAAATAAAATTATTTATATTTATAT
*
1562836 TAAAATAAAATTATTTATATTTATTT
1 TAAAATAAAATTATTTATATTTATAT
1562862 TAAAAT
1 TAAAAT
1562868 TTTTTTAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 6 0.21
24 9 0.32
25 5 0.18
26 8 0.29
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (26 bp):
TAAAATAAAATTATTTATATTTATAT
Found at i:1566498 original size:51 final size:51
Alignment explanation
Indices: 1566408--1566510 Score: 140
Period size: 49 Copynumber: 2.0 Consensus size: 51
1566398 TGGGTTGTAA
1566408 ATAAATTTTTAAAAATATTTATATTTATATTTAAATAAT-AATATAAAAAT
1 ATAAATTTTTAAAAATATTTATATTTATATTTAAATAATAAATATAAAAAT
* *
1566458 ATAATATTTTT-AAAA-ATTTATATTTATATTTATATTTAATAAATATTAAAAT
1 ATAA-ATTTTTAAAAATATTTATATTTATATTTA-A-ATAATAAATATAAAAAT
1566510 A
1 A
1566511 CGAGTAACTT
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
49 17 0.36
50 9 0.19
51 10 0.21
52 11 0.23
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (51 bp):
ATAAATTTTTAAAAATATTTATATTTATATTTAAATAATAAATATAAAAAT
Found at i:1570637 original size:2 final size:2
Alignment explanation
Indices: 1570632--1570663 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
1570622 ATGTGTGTGC
*
1570632 GA GA GA GA GC GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1570664 CTCATCTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:1574433 original size:24 final size:24
Alignment explanation
Indices: 1574406--1574451 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
1574396 AATAATAATT
*
1574406 TAAATAAAAGTAATTATAAAAAAA
1 TAAAAAAAAGTAATTATAAAAAAA
*
1574430 TAAAAAAAATTAATTATAAAAA
1 TAAAAAAAAGTAATTATAAAAA
1574452 TATATTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (24 bp):
TAAAAAAAAGTAATTATAAAAAAA
Found at i:1574741 original size:23 final size:25
Alignment explanation
Indices: 1574701--1574764 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
1574691 ATATTTATAT
1574701 TTATATTTTT-TA-ATTTAA-AA-TA
1 TTATATTTTTATATA-TTAATAATTA
1574723 TTATATTTTTATATATTAATTAATTA
1 TTATATTTTTATATATTAA-TAATTA
*
1574749 TTTTA-TTTTATATATT
1 TTATATTTTTATATATT
1574765 TATATATATA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
22 10 0.28
23 6 0.17
24 1 0.03
25 13 0.36
26 6 0.17
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (25 bp):
TTATATTTTTATATATTAATAATTA
Found at i:1574741 original size:28 final size:26
Alignment explanation
Indices: 1574695--1574764 Score: 70
Period size: 28 Copynumber: 2.7 Consensus size: 26
1574685 ACATTTATAT
* * *
1574695 TTATATTTATATTTTTTAATTTAAAATA
1 TTATATTTTTATATATTAA-TT-AAATA
*
1574723 TTATATTTTTATATATTAATTAATTA
1 TTATATTTTTATATATTAATTAAATA
*
1574749 TTTTA-TTTTATATATT
1 TTATATTTTTATATATT
1574765 TATATATATA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
25 11 0.30
26 8 0.22
27 2 0.05
28 16 0.43
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (26 bp):
TTATATTTTTATATATTAATTAAATA
Found at i:1574936 original size:11 final size:11
Alignment explanation
Indices: 1574920--1574957 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
1574910 TATATTCATG
*
1574920 TATTTATATCA
1 TATTTATATTA
1574931 TATTTATATTA
1 TATTTATATTA
1574942 T-TTTCATATTA
1 TATTT-ATATTA
1574953 TATTT
1 TATTT
1574958 TAAATTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
10 3 0.12
11 18 0.75
12 3 0.12
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (11 bp):
TATTTATATTA
Found at i:1574970 original size:20 final size:22
Alignment explanation
Indices: 1574922--1574971 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
1574912 TATTCATGTA
*
1574922 TTTATATCATATTTATATTATT
1 TTTATATCATATTTATATAATT
* *
1574944 TTCATATTATATTT-TA-AATT
1 TTTATATCATATTTATATAATT
1574964 TTTATATC
1 TTTATATC
1574972 TATCTTAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
20 9 0.39
21 2 0.09
22 12 0.52
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTATATCATATTTATATAATT
Found at i:1575143 original size:7 final size:7
Alignment explanation
Indices: 1575091--1575126 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
1575081 TTTATATTTA
1575091 TATTATT
1 TATTATT
1575098 TATTATT
1 TATTATT
1575105 TATTATT
1 TATTATT
1575112 TATTATT
1 TATTATT
1575119 TATTATT
1 TATTATT
1575126 T
1 T
1575127 GTAGTTTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TATTATT
Found at i:1575728 original size:24 final size:23
Alignment explanation
Indices: 1575684--1575728 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
1575674 TTATATTCAT
*
1575684 ATTATTTTTTATGTATTATTTTA
1 ATTATTTTTTATGTATCATTTTA
1575707 ATTATTTTTCTATGCT-TCATTT
1 ATTATTTTT-TATG-TATCATTT
1575729 ATATCATGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 9 0.47
24 9 0.47
25 1 0.05
ACGTcount: A:0.22, C:0.07, G:0.04, T:0.67
Consensus pattern (23 bp):
ATTATTTTTTATGTATCATTTTA
Found at i:1576161 original size:19 final size:20
Alignment explanation
Indices: 1576139--1576177 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
1576129 ATTTTAAATT
1576139 ATAAAAATAATTTAA-ATAA
1 ATAAAAATAATTTAATATAA
* *
1576158 ATAATAATTATTTAATATAA
1 ATAAAAATAATTTAATATAA
1576178 TTTAATTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
ATAAAAATAATTTAATATAA
Found at i:1576190 original size:16 final size:16
Alignment explanation
Indices: 1576135--1576192 Score: 52
Period size: 15 Copynumber: 3.8 Consensus size: 16
1576125 TAAAATTTTA
*
1576135 AATTATAAAAATAATTT
1 AATT-TAAATATAATTT
*
1576152 AA-ATAAATAATAA-TT
1 AATTTAAAT-ATAATTT
1576167 -ATTT-AATATAATTT
1 AATTTAAATATAATTT
1576181 AATTTAAATATA
1 AATTTAAATATA
1576193 TATAATCATT
Statistics
Matches: 33, Mismatches: 3, Indels: 11
0.70 0.06 0.23
Matches are distributed among these distances:
13 4 0.12
14 6 0.18
15 11 0.33
16 10 0.30
17 2 0.06
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AATTTAAATATAATTT
Found at i:1576190 original size:27 final size:28
Alignment explanation
Indices: 1576160--1576230 Score: 73
Period size: 26 Copynumber: 2.7 Consensus size: 28
1576150 TTAAATAAAT
*
1576160 AATAATTATTTAAT-A-TAATTTAATTTA
1 AATAATTATATAATCATTAATTTAA-TTA
1576187 AAT-A-TATATAATCATTAATTTAATTA
1 AATAATTATATAATCATTAATTTAATTA
*
1576213 AAT-ATT-TATAATTATTAA
1 AATAATTATATAATCATTAA
1576231 AAATCTTTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
25 7 0.18
26 20 0.51
27 12 0.31
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (28 bp):
AATAATTATATAATCATTAATTTAATTA
Found at i:1576217 original size:22 final size:20
Alignment explanation
Indices: 1576171--1576217 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
1576161 ATAATTATTT
1576171 AATATAATTTAATTTAAATA
1 AATATAATTTAATTTAAATA
* *
1576191 TATATAATCATTAATTTAATTA
1 AATATAAT--TTAATTTAAATA
1576213 AATAT
1 AATAT
1576218 TTATAATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 7 0.32
22 15 0.68
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
AATATAATTTAATTTAAATA
Found at i:1576220 original size:34 final size:33
Alignment explanation
Indices: 1576143--1576220 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 33
1576133 TAAATTATAA
1576143 AAATAATTTAAATAAATAATAATTATTTAATAT
1 AAATAATTTAAATAAATAATAATTATTTAATAT
* *
1576176 AATTTAATTTAAATATATATAATCATTAATTTAAT-T
1 AA-ATAATTTAAATA-A-ATAATAATT-ATTTAATAT
1576212 AAAT-ATTTA
1 AAATAATTTA
1576221 TAATTATTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
33 2 0.05
34 16 0.42
35 2 0.05
36 11 0.29
37 7 0.18
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (33 bp):
AAATAATTTAAATAAATAATAATTATTTAATAT
Found at i:1576222 original size:26 final size:27
Alignment explanation
Indices: 1576175--1576230 Score: 87
Period size: 26 Copynumber: 2.1 Consensus size: 27
1576165 TTATTTAATA
1576175 TAATTTAATTTAAATATATATAATCAT
1 TAATTTAATTTAAATATATATAATCAT
* *
1576202 TAATTTAA-TTAAATATTTATAATTAT
1 TAATTTAATTTAAATATATATAATCAT
1576228 TAA
1 TAA
1576231 AAATCTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 19 0.70
27 8 0.30
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (27 bp):
TAATTTAATTTAAATATATATAATCAT
Found at i:1577118 original size:23 final size:23
Alignment explanation
Indices: 1577083--1577130 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 23
1577073 TATATCGATT
1577083 TAAAATTCATATTTAATTATAAATA
1 TAAAATT-ATATTTAA-TATAAATA
*
1577108 TAAAATT-TATTTAATATTAATA
1 TAAAATTATATTTAATATAAATA
1577130 T
1 T
1577131 TTATTAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 8 0.36
23 7 0.32
25 7 0.32
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
TAAAATTATATTTAATATAAATA
Found at i:1577121 original size:113 final size:115
Alignment explanation
Indices: 1576889--1577121 Score: 260
Period size: 112 Copynumber: 2.1 Consensus size: 115
1576879 AATAAAAAAA
* * * *
1576889 ATTTTAAAAATAAATTTATTTATTTTATTTTTAAATGATGTATTTAAAAGTATAAGTCAAAATGT
1 ATTTAAAAAATAAATTTATTTATTTTATTTTTAAATAATATATTTAAAAGTATAAGTCAAAATAT
* * * ** *
1576954 TGATTTGCATGTCGATTTAAAATTCATAAATGATTAATTTAATGAAATTT
66 TAATTTGCATATCGATTTAAAATTCATAAATAATTAAAATAATAAAATTT
***
1577004 -TTTAAAAAATAAATTTATTTATTTTA-TTTTAAATAATATATTTAAAAG-ATTAA-TCTGTATA
1 ATTTAAAAAATAAATTTATTTATTTTATTTTTAAATAATATATTTAAAAGTA-TAAGTCAAAATA
** **
1577065 TTAATTTTTATATCGATTTAAAATTCATATTTAATTATAAAT-ATAAAATTT
65 TTAATTTGCATATCGATTTAAAATTCATAAATAATTA-AAATAATAAAATTT
1577116 ATTTAA
1 ATTTAA
1577122 TATTAATATT
Statistics
Matches: 98, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
112 43 0.44
113 30 0.31
114 25 0.26
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (115 bp):
ATTTAAAAAATAAATTTATTTATTTTATTTTTAAATAATATATTTAAAAGTATAAGTCAAAATAT
TAATTTGCATATCGATTTAAAATTCATAAATAATTAAAATAATAAAATTT
Found at i:1577131 original size:36 final size:35
Alignment explanation
Indices: 1577080--1577149 Score: 88
Period size: 36 Copynumber: 2.0 Consensus size: 35
1577070 TTTTATATCG
*
1577080 ATTTAAAATTCATATTTAATT-ATAAATATAAAATTT
1 ATTTAAAATTAATATTT-ATTAATAAATA-AAAATTT
* *
1577116 ATTTAATATTAATATTTATTAATAATTAAAAATT
1 ATTTAAAATTAATATTTATTAATAAATAAAAATT
1577150 AAAAATAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
35 9 0.30
36 21 0.70
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (35 bp):
ATTTAAAATTAATATTTATTAATAAATAAAAATTT
Found at i:1577134 original size:17 final size:17
Alignment explanation
Indices: 1577080--1577144 Score: 53
Period size: 17 Copynumber: 3.7 Consensus size: 17
1577070 TTTTATATCG
* *
1577080 ATTTAAAATTCATATTT
1 ATTTAATATTAATATTT
*
1577097 AATTATAA-ATATAAAATTT
1 -ATT-TAATAT-TAATATTT
1577116 ATTTAATATTAATATTT
1 ATTTAATATTAATATTT
1577133 A-TTAATAATTAA
1 ATTTAAT-ATTAA
1577145 AAATTAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
16 5 0.12
17 16 0.40
18 10 0.25
19 9 0.22
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTTAATATTAATATTT
Found at i:1584695 original size:2 final size:2
Alignment explanation
Indices: 1584688--1584714 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1584678 AGAGCAAAAC
1584688 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1584715 GAGAGAGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1584719 original size:2 final size:2
Alignment explanation
Indices: 1584714--1584766 Score: 79
Period size: 2 Copynumber: 26.5 Consensus size: 2
1584704 ATATATATAT
* *
1584714 AG AG AG AG AG AG AG AG AG AG AG AG AC AG AG AG AC AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
*
1584756 AC AG AG AG AG A
1 AG AG AG AG AG A
1584767 AGGGCTGGGA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.06, G:0.43, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1584848 original size:3 final size:3
Alignment explanation
Indices: 1584840--1584878 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
1584830 GAGTTATTTA
1584840 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1584879 TTGAATTTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:1585336 original size:25 final size:24
Alignment explanation
Indices: 1585308--1585379 Score: 58
Period size: 25 Copynumber: 2.9 Consensus size: 24
1585298 TTAACTCATA
1585308 TTATAATTAAAATAATATTAAAATT
1 TTATAATTAAAATAATATTAAAA-T
** *
1585333 TTATTTTTATAATAATAATT-AAAT
1 TTATAATTAAAATAAT-ATTAAAAT
*
1585357 TTA-AATATAAAATATTATATAAA
1 TTATAAT-TAAAATAATAT-TAAA
1585380 TAATAATTTA
Statistics
Matches: 36, Mismatches: 7, Indels: 8
0.71 0.14 0.16
Matches are distributed among these distances:
23 3 0.08
24 12 0.33
25 18 0.50
26 3 0.08
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (24 bp):
TTATAATTAAAATAATATTAAAAT
Found at i:1585833 original size:17 final size:18
Alignment explanation
Indices: 1585797--1585866 Score: 58
Period size: 18 Copynumber: 3.9 Consensus size: 18
1585787 AAATTATTAA
*
1585797 TATTTATATAATATAAAT
1 TATTAATATAATATAAAT
*
1585815 TATTAATATATTA-AAAT
1 TATTAATATAATATAAAT
1585832 TATATAA-ATAAT-TATAA-
1 TAT-TAATATAATATA-AAT
*
1585849 TATAAATATTAATATAAA
1 TATTAATA-TAATATAAA
1585867 CATGAATTAC
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
16 2 0.05
17 16 0.38
18 22 0.52
19 2 0.05
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
TATTAATATAATATAAAT
Found at i:1585836 original size:26 final size:26
Alignment explanation
Indices: 1585785--1585866 Score: 82
Period size: 24 Copynumber: 3.2 Consensus size: 26
1585775 ATTTAACAAA
* *
1585785 ATAAATTATTAATAT-TT-ATATAAT
1 ATAAATTATTAATATATTAAAATTAT
1585809 ATAAATTATTAATATATTAAAATTAT
1 ATAAATTATTAATATATTAAAATTAT
*
1585835 ATAAATAATT-ATA-ATATAAATATTAAT
1 ATAAATTATTAATATAT-TAAA-ATT-AT
1585862 ATAAA
1 ATAAA
1585867 CATGAATTAC
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
24 17 0.34
25 9 0.18
26 17 0.34
27 7 0.14
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (26 bp):
ATAAATTATTAATATATTAAAATTAT
Found at i:1586568 original size:9 final size:8
Alignment explanation
Indices: 1586521--1586568 Score: 53
Period size: 8 Copynumber: 5.9 Consensus size: 8
1586511 AACATCATTA
1586521 AAAAAAAG
1 AAAAAAAG
*
1586529 TAAAAAA-
1 AAAAAAAG
1586536 AAAAAAAG
1 AAAAAAAG
*
1586544 AAAGAAAG
1 AAAAAAAG
1586552 AAAGAAAAG
1 AAA-AAAAG
1586561 AACAAAAA
1 AA-AAAAA
1586569 TAGACATTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
7 6 0.18
8 16 0.48
9 10 0.30
10 1 0.03
ACGTcount: A:0.83, C:0.02, G:0.12, T:0.02
Consensus pattern (8 bp):
AAAAAAAG
Found at i:1587680 original size:20 final size:20
Alignment explanation
Indices: 1587657--1587697 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
1587647 ATAATTTATT
*
1587657 ATATTAAAAAATATTAATTA
1 ATATTAAAAAACATTAATTA
*
1587677 ATATTAAATAACATTAATTA
1 ATATTAAAAAACATTAATTA
1587697 A
1 A
1587698 AATAATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (20 bp):
ATATTAAAAAACATTAATTA
Found at i:1596353 original size:254 final size:254
Alignment explanation
Indices: 1595904--1596647 Score: 1479
Period size: 254 Copynumber: 2.9 Consensus size: 254
1595894 TATGCTCCCA
1595904 CCAAAACCAGACAACAGATAGATAAGCCCAACACGTACTGCCAGGAGAAAGAACAGATATCAGTT
1 CCAAAACCAGACAACAGATAGATAAGCCCAACACGTACTGCCAGGAGAAAGAACAGATATCAGTT
1595969 ATAACACCATGATGGGCCTACTCCAAAAGTAAAATTTATAAAATCCAGCTGACCAGAGACCACTA
66 ATAACACCATGATGGGCCTACTCCAAAAGTAAAATTTATAAAATCCAGCTGACCAGAGACCACTA
1596034 TGCTGTTGGAATGTACAAAGTCAACCACCAATACCAAGTAATGCAATCAATGGATCATTTGCAAG
131 TGCTGTTGGAATGTACAAAGTCAACCACCAATACCAAGTAATGCAATCAATGGATCATTTGCAAG
1596099 AAATATTTATAGGATTTTCATTTTGCTCACTGATCAAAGACAGATATCATTTATAAAAT
196 AAATATTTATAGGATTTTCATTTTGCTCACTGATCAAAGACAGATATCATTTATAAAAT
1596158 CCAAAACCAGACAACAGATAGATAAGCCCAACACGTACTGCCAGGAGAAAGAACAGATATCAGTT
1 CCAAAACCAGACAACAGATAGATAAGCCCAACACGTACTGCCAGGAGAAAGAACAGATATCAGTT
1596223 ATAACACCATGATGGGCCTACTCCAAAAGTAAAATTTATAAAATCCAGCTGACCAGAGACCACTA
66 ATAACACCATGATGGGCCTACTCCAAAAGTAAAATTTATAAAATCCAGCTGACCAGAGACCACTA
1596288 TGCTGTTGGAATGTACAAAGTCAACCACCAATACCAAGTAATGCAATCAATGGATCATTTGCAAG
131 TGCTGTTGGAATGTACAAAGTCAACCACCAATACCAAGTAATGCAATCAATGGATCATTTGCAAG
1596353 AAATATTTATAGGATTTTCATTTTGCTCACTGATCAAAGACAGATATCATTTATAAAAT
196 AAATATTTATAGGATTTTCATTTTGCTCACTGATCAAAGACAGATATCATTTATAAAAT
1596412 CCAAAACCAGACAACAGATAGATAAGCCCAACACGTACTGCCAGGAGAAAGAACAGATATCAGTT
1 CCAAAACCAGACAACAGATAGATAAGCCCAACACGTACTGCCAGGAGAAAGAACAGATATCAGTT
*
1596477 ATAACACCATGATGGGCCTACTCCAAAAGTACAATTTATAAAATCCAGCTGACCAGAGACCACTA
66 ATAACACCATGATGGGCCTACTCCAAAAGTAAAATTTATAAAATCCAGCTGACCAGAGACCACTA
1596542 TGCTGTTGGAATGTACAAAGTCAACCACCAATACCAAGTAATGCAATCAATGGATCATTTGCAAG
131 TGCTGTTGGAATGTACAAAGTCAACCACCAATACCAAGTAATGCAATCAATGGATCATTTGCAAG
1596607 AAATATTTATAGGATTTTCATTTTGCTCACTGATCAAAGAC
196 AAATATTTATAGGATTTTCATTTTGCTCACTGATCAAAGAC
1596648 TGACCAAACA
Statistics
Matches: 489, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
254 489 1.00
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (254 bp):
CCAAAACCAGACAACAGATAGATAAGCCCAACACGTACTGCCAGGAGAAAGAACAGATATCAGTT
ATAACACCATGATGGGCCTACTCCAAAAGTAAAATTTATAAAATCCAGCTGACCAGAGACCACTA
TGCTGTTGGAATGTACAAAGTCAACCACCAATACCAAGTAATGCAATCAATGGATCATTTGCAAG
AAATATTTATAGGATTTTCATTTTGCTCACTGATCAAAGACAGATATCATTTATAAAAT
Found at i:1600323 original size:22 final size:21
Alignment explanation
Indices: 1600281--1600339 Score: 73
Period size: 22 Copynumber: 2.8 Consensus size: 21
1600271 AAAAATAAGA
* *
1600281 AATTGAATTAATTATTTTATC
1 AATTTAATTAATTTTTTTATC
1600302 AATTTAATTAAGTTTTTTTATC
1 AATTTAATTAA-TTTTTTTATC
* *
1600324 GATTTAATAAATTTTT
1 AATTTAATTAATTTTT
1600340 ATTAATTTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 15 0.45
22 18 0.55
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (21 bp):
AATTTAATTAATTTTTTTATC
Found at i:1600338 original size:21 final size:22
Alignment explanation
Indices: 1600281--1600339 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 22
1600271 AAAAATAAGA
* *
1600281 AATTGAATT-AATTATTTTATC
1 AATTTAATTAAATTTTTTTATC
*
1600302 AATTTAATTAAGTTTTTTTATC
1 AATTTAATTAAATTTTTTTATC
*
1600324 GATTTAA-TAAATTTTT
1 AATTTAATTAAATTTTT
1600340 ATTAATTTGA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 16 0.50
22 16 0.50
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (22 bp):
AATTTAATTAAATTTTTTTATC
Found at i:1601741 original size:3 final size:3
Alignment explanation
Indices: 1601733--1601768 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
1601723 CTTTTGATTC
1601733 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1601769 TCCATTTTCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:1605356 original size:23 final size:22
Alignment explanation
Indices: 1605326--1605408 Score: 71
Period size: 23 Copynumber: 3.7 Consensus size: 22
1605316 ATGATATAGA
1605326 ATTAAAAATAGTATAAAAATAAT
1 ATTAAAAATA-TATAAAAATAAT
* *
1605349 ATTAAAAA-ATAT-ATAATTAT
1 ATTAAAAATATATAAAAATAAT
** *
1605369 ATTATTAATTTATAAAAATACAT
1 ATTAAAAATATATAAAAATA-AT
*
1605392 ATTAAATATATAATAAA
1 ATTAAAAATAT-ATAAA
1605409 TTAAATATAA
Statistics
Matches: 45, Mismatches: 11, Indels: 7
0.71 0.17 0.11
Matches are distributed among these distances:
20 12 0.27
21 6 0.13
22 5 0.11
23 17 0.38
24 5 0.11
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (22 bp):
ATTAAAAATATATAAAAATAAT
Found at i:1605420 original size:42 final size:41
Alignment explanation
Indices: 1605337--1605443 Score: 105
Period size: 42 Copynumber: 2.6 Consensus size: 41
1605327 TTAAAAATAG
*
1605337 TATAAAAATAATATTAAAAAATATATAATTATATTATTAATT
1 TATAAAAATAATATTAAAAAATATATAATTATAATATTAA-T
*
1605379 TATAAAAATACATATT-AAATATATAATAAATTA-AATA-TAAT
1 TATAAAAATA-ATATTAAAAAATAT-AT-AATTATAATATTAAT
* * *
1605420 TAT-AATATAAAAATAAAAAATATA
1 TATAAAAATAATATTAAAAAATATA
1605444 ATACACGTAA
Statistics
Matches: 55, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
39 4 0.07
40 12 0.22
41 4 0.07
42 20 0.36
43 10 0.18
44 5 0.09
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.37
Consensus pattern (41 bp):
TATAAAAATAATATTAAAAAATATATAATTATAATATTAAT
Found at i:1605436 original size:23 final size:21
Alignment explanation
Indices: 1605331--1605436 Score: 65
Period size: 21 Copynumber: 4.8 Consensus size: 21
1605321 ATAGAATTAA
1605331 AAATAGTATAAAAAT-AATATT
1 AAATA-TATAAAAATAAATATT
* * * *
1605352 AAAAAATATATAATTATATTATT
1 -AAATATATAAAAATA-AATATT
* *
1605375 -AATTTATAAAAATACATATT
1 AAATATATAAAAATAAATATT
1605395 AAATATATAATAAATTAAATA-T
1 AAATATATAA-AAA-TAAATATT
1605417 AATTATAATATAAAAATAAA
1 AA--AT-ATATAAAAATAAA
1605437 AAATATAATA
Statistics
Matches: 64, Mismatches: 12, Indels: 15
0.70 0.13 0.16
Matches are distributed among these distances:
20 4 0.06
21 25 0.39
22 10 0.16
23 14 0.22
24 5 0.08
25 6 0.09
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.37
Consensus pattern (21 bp):
AAATATATAAAAATAAATATT
Found at i:1605660 original size:29 final size:27
Alignment explanation
Indices: 1605602--1605662 Score: 70
Period size: 29 Copynumber: 2.2 Consensus size: 27
1605592 CTATAGATTA
* *
1605602 AATAATATTATTTAATTATTATAAATT
1 AATAATATTATTTAATTATAATAAAAT
1605629 AATAATATTATTTAAAATT-TAAATAAAAT
1 AATAATATTATTT--AATTAT-AATAAAAT
1605658 AATAA
1 AATAA
1605663 ACGAGACATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 13 0.45
28 1 0.03
29 15 0.52
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (27 bp):
AATAATATTATTTAATTATAATAAAAT
Found at i:1608975 original size:23 final size:23
Alignment explanation
Indices: 1608948--1608994 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
1608938 CATATTTTGC
1608948 TCGCCATTTTCATGTTTCTTCAG
1 TCGCCATTTTCATGTTTCTTCAG
1608971 TCGCCATTTTCATGTTTCTTCAG
1 TCGCCATTTTCATGTTTCTTCAG
1608994 T
1 T
1608995 TCTGGGTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.13, C:0.26, G:0.13, T:0.49
Consensus pattern (23 bp):
TCGCCATTTTCATGTTTCTTCAG
Found at i:1619644 original size:2 final size:2
Alignment explanation
Indices: 1619639--1619678 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
1619629 CCCCCTCCCA
1619639 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1619679 GGCAATGGGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:1622056 original size:2 final size:2
Alignment explanation
Indices: 1622046--1622081 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
1622036 TACAGAAAAA
*
1622046 AC AC CC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1622082 TTCGTTTTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.53, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:1622412 original size:13 final size:13
Alignment explanation
Indices: 1622394--1622443 Score: 52
Period size: 13 Copynumber: 3.9 Consensus size: 13
1622384 TTATTTAAAA
1622394 TAATATTAAAATT
1 TAATATTAAAATT
*
1622407 TAATATTAATATT
1 TAATATTAAAATT
1622420 T-ATAATT-AAATGT
1 TAAT-ATTAAAAT-T
1622433 TAATA-TAAAAT
1 TAATATTAAAAT
1622444 AATATTGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
12 6 0.19
13 23 0.74
14 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (13 bp):
TAATATTAAAATT
Found at i:1624000 original size:2 final size:2
Alignment explanation
Indices: 1623985--1624034 Score: 82
Period size: 2 Copynumber: 25.0 Consensus size: 2
1623975 TTCACACGAC
* *
1623985 AT AT AT AC AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1624027 AT AT AT AT
1 AT AT AT AT
1624035 TCTAATCCCA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:1624729 original size:32 final size:33
Alignment explanation
Indices: 1624668--1624732 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1624658 ACACTTTCAG
*
1624668 ATGTATCGATATATTATGCTTTGTATCGATACA
1 ATGTATCGATATATTATGCATTGTATCGATACA
1624701 ATGTATCGATATATGT-T-CATTGTATCGATACA
1 ATGTATCGATATAT-TATGCATTGTATCGATACA
1624733 TGAACAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 14 0.47
33 15 0.50
34 1 0.03
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (33 bp):
ATGTATCGATATATTATGCATTGTATCGATACA
Found at i:1632479 original size:33 final size:33
Alignment explanation
Indices: 1632435--1632497 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
1632425 AGTTGATTAT
* *
1632435 TTCACTTTCGCAGCACATGAATGAGCACTTCAC
1 TTCACTCTCGCAGCACATGAATGAACACTTCAC
* *
1632468 TTCACTCTCGCAGCGCATGGATGAACACTT
1 TTCACTCTCGCAGCACATGAATGAACACTT
1632498 TAGTTCTCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.27
Consensus pattern (33 bp):
TTCACTCTCGCAGCACATGAATGAACACTTCAC
Found at i:1633305 original size:21 final size:22
Alignment explanation
Indices: 1633263--1633305 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
1633253 AAGTTATGAA
* **
1633263 CAAATATTTTTGAGCTTTAAAT
1 CAAATATTTTTAAGCTAGAAAT
1633285 CAAATATTTTTAAG-TAGAAAT
1 CAAATATTTTTAAGCTAGAAAT
1633306 ACTTCAAAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.42
Consensus pattern (22 bp):
CAAATATTTTTAAGCTAGAAAT
Found at i:1633562 original size:20 final size:20
Alignment explanation
Indices: 1633521--1633568 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
1633511 CCACTATTTT
* *
1633521 TATCGATACATGGTATAATG
1 TATCGATACATGGAAGAATG
1633541 TATCGATACAT-GAAGAATTG
1 TATCGATACATGGAAGAA-TG
*
1633561 TATTGATA
1 TATCGATA
1633569 TATTGCTTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (20 bp):
TATCGATACATGGAAGAATG
Found at i:1634544 original size:2 final size:2
Alignment explanation
Indices: 1634492--1634527 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
1634482 TTAGATGTGA
1634492 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1634528 CATAATACAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1636400 original size:2 final size:2
Alignment explanation
Indices: 1636388--1636426 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
1636378 TCCATTGTTG
*
1636388 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1636427 CTTAGTGTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1636646 original size:13 final size:13
Alignment explanation
Indices: 1636628--1636653 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1636618 TTCCTCGTTT
1636628 AAAAAGAAAAAAA
1 AAAAAGAAAAAAA
1636641 AAAAAGAAAAAAA
1 AAAAAGAAAAAAA
1636654 CTTTCCCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAAA
Found at i:1639219 original size:19 final size:19
Alignment explanation
Indices: 1639188--1639239 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
1639178 AATTTACTAT
*
1639188 TATTAA-TATTTATAACTAA
1 TATTAATTAATTATAA-TAA
1639207 T-TTAATTAATTATAATAA
1 TATTAATTAATTATAATAA
* *
1639225 TATTTATTTATTATA
1 TATTAATTAATTATA
1639240 TTTATAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
18 8 0.29
19 20 0.71
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (19 bp):
TATTAATTAATTATAATAA
Found at i:1639263 original size:15 final size:15
Alignment explanation
Indices: 1639243--1639277 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
1639233 TATTATATTT
*
1639243 ATAATAATATTAAAA
1 ATAATAAAATTAAAA
1639258 ATAATAAAATTAAAA
1 ATAATAAAATTAAAA
1639273 A-AATA
1 ATAATA
1639278 TCTACAATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
ATAATAAAATTAAAA
Found at i:1640107 original size:32 final size:34
Alignment explanation
Indices: 1640042--1640122 Score: 105
Period size: 32 Copynumber: 2.4 Consensus size: 34
1640032 TCGTTTTATT
*
1640042 ATTTAAATAAATTAAAATATTATTTTTATATTTA
1 ATTTAAATAAATTAAAATATTATTTTTAAATTTA
*
1640076 ATTTAAAT-GATT-AAATATT-TTATTTAAATTTA
1 ATTTAAATAAATTAAAATATTATT-TTTAAATTTA
1640108 ATTTAATATAAATTA
1 ATTTAA-ATAAATTA
1640123 TATTTATTAG
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
31 2 0.05
32 22 0.55
33 5 0.12
34 11 0.28
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (34 bp):
ATTTAAATAAATTAAAATATTATTTTTAAATTTA
Found at i:1640160 original size:16 final size:17
Alignment explanation
Indices: 1640139--1640173 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
1640129 TTAGAATAAA
1640139 TAAAT-AATTTAATTTT
1 TAAATAAATTTAATTTT
1640155 TAAATAAATTTAATTTT
1 TAAATAAATTTAATTTT
1640172 TA
1 TA
1640174 CGATTACATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TAAATAAATTTAATTTT
Found at i:1640868 original size:18 final size:18
Alignment explanation
Indices: 1640841--1640879 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
1640831 ATTTCCAAAC
1640841 TATTAATTA-TATTATTAT
1 TATTAATTATTA-TATTAT
*
1640859 TATTATTTATTATATTAT
1 TATTAATTATTATATTAT
1640877 TAT
1 TAT
1640880 ATGTGTCACG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TATTAATTATTATATTAT
Found at i:1641756 original size:2 final size:2
Alignment explanation
Indices: 1641749--1641781 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1641739 ATCTTAATAA
1641749 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1641782 AAAACTCTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1647892 original size:98 final size:93
Alignment explanation
Indices: 1647720--1647900 Score: 263
Period size: 98 Copynumber: 1.9 Consensus size: 93
1647710 GTAACATGTG
* *
1647720 AAATCCAGAAAGGATAGGAAGAAAATAATGTTTAGGTTTAGGCTGTGGTATCCCCATGGATTGTT
1 AAATCCAGAAAGGATAGGAAGAAAATAATGCTTAGGTTAAGGCTGTGGTATCCCCATGGATTGTT
*
1647785 GCTCTCCCACTTCCATTGTAGCATGCGA
66 GCTCGCCCACTTCCATTGTAGCATGCGA
* * *
1647813 AAATTCAGAAAGGATGGGGGAGAAAATAATGCTTAGGTTAAGGCTTTGATTGGTATCCCCATGGA
1 AAATCCAGAAAGGAT-AGGAAGAAAATAATGCTTAGGTTAAGGC--TG--TGGTATCCCCATGGA
1647878 TTGTTGCTCGCCCACTTCCATTG
61 TTGTTGCTCGCCCACTTCCATTG
1647901 GTCCCTGCAC
Statistics
Matches: 77, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
93 14 0.18
94 24 0.31
96 2 0.03
98 37 0.48
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (93 bp):
AAATCCAGAAAGGATAGGAAGAAAATAATGCTTAGGTTAAGGCTGTGGTATCCCCATGGATTGTT
GCTCGCCCACTTCCATTGTAGCATGCGA
Found at i:1648930 original size:32 final size:32
Alignment explanation
Indices: 1648884--1648954 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
1648874 AAGGACTTAT
1648884 AATACTATAAAAATTCTTCTTTCTTCAAGAAGG
1 AATA-TATAAAAATTCTTCTTTCTTCAAGAAGG
1648917 AATATATAAAAATTCTTCTTTCTTCAAGAAGG
1 AATATATAAAAATTCTTCTTTCTTCAAGAAGG
1648949 AATATA
1 AATATA
1648955 GCTTTTAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 34 0.89
33 4 0.11
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.37
Consensus pattern (32 bp):
AATATATAAAAATTCTTCTTTCTTCAAGAAGG
Found at i:1653270 original size:156 final size:154
Alignment explanation
Indices: 1652970--1653283 Score: 547
Period size: 156 Copynumber: 2.0 Consensus size: 154
1652960 GGAGACCTAC
*
1652970 GCTTTCTTACCTTACCAGTCTGACTCTAGTTTGATTTCTGCTTGACTAGCAATTCCAAGAACCGA
1 GCTTTCTTACCTTACCAGTCTGACTCCAGTTTGATTTCTGCTTGACTAGCAATTCCAAGAACCGA
* * *
1653035 ATCTAAATAACATATGTCAACACTATAATCCACAGTGATATTCTGATCAAGAGAATTTGTTACTT
66 ATCTAAATAACATATGTCAACACTATAATCCACAGTAATATTCTGATCAAGAGAATTTGCTACGT
*
1653100 CGAGACCCTGTCCCTCTTCTTTGA
131 CGAGACCCTCTCCCTCTTCTTTGA
* *
1653124 GCTTTCTTACCTTACCACAGTCTGCCTCCAGTTTGATTTCTGCTTGACTAGCAATTCCAAGAACT
1 GCTTTCTTACCTTA-C-CAGTCTGACTCCAGTTTGATTTCTGCTTGACTAGCAATTCCAAGAACC
1653189 GAATCTAAATAACATATGTCAACACTATAATCCACAGTAATATTCTGATCAAGAGAATTTGCTAC
64 GAATCTAAATAACATATGTCAACACTATAATCCACAGTAATATTCTGATCAAGAGAATTTGCTAC
1653254 GTCGAGACCCTCTCCCTCTTCTTTGA
129 GTCGAGACCCTCTCCCTCTTCTTTGA
1653280 GCTT
1 GCTT
1653284 CATGCATTTT
Statistics
Matches: 151, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
154 14 0.09
155 1 0.01
156 136 0.90
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (154 bp):
GCTTTCTTACCTTACCAGTCTGACTCCAGTTTGATTTCTGCTTGACTAGCAATTCCAAGAACCGA
ATCTAAATAACATATGTCAACACTATAATCCACAGTAATATTCTGATCAAGAGAATTTGCTACGT
CGAGACCCTCTCCCTCTTCTTTGA
Found at i:1657490 original size:22 final size:22
Alignment explanation
Indices: 1657459--1657513 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
1657449 GGTAGATTTA
1657459 ATAATT-TATTTAT-TTATATT
1 ATAATTATATTTATATTATATT
*
1657479 ATATTTGATATTT-TATTATATT
1 ATAATT-ATATTTATATTATATT
1657501 ATAATTATATTTA
1 ATAATTATATTTA
1657514 AAATATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
20 5 0.17
21 7 0.24
22 17 0.59
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (22 bp):
ATAATTATATTTATATTATATT
Found at i:1657522 original size:30 final size:28
Alignment explanation
Indices: 1657454--1657535 Score: 96
Period size: 27 Copynumber: 2.9 Consensus size: 28
1657444 AGATAGGTAG
*
1657454 ATTTAATAATTTATT-TATTTATATTAT
1 ATTTAATATTTTATTATATTTATATTAT
*
1657481 ATTTGATATTTTATTATA-TTATAATTAT
1 ATTTAATATTTTATTATATTTAT-ATTAT
*
1657509 ATTTAAAATATTTTTTTATATTTATAT
1 ATTT--AATATTTTATTATATTTATAT
1657536 AAATTTAGTA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
27 17 0.37
28 11 0.24
30 14 0.30
31 4 0.09
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (28 bp):
ATTTAATATTTTATTATATTTATATTAT
Found at i:1657695 original size:16 final size:17
Alignment explanation
Indices: 1657663--1657695 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
1657653 AAAAACAGGA
1657663 TTAAAAAATAAACTTAT
1 TTAAAAAATAAACTTAT
1657680 TTAAAAAATAAA-TTAT
1 TTAAAAAATAAACTTAT
1657696 AAGTTAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (17 bp):
TTAAAAAATAAACTTAT
Found at i:1668661 original size:2 final size:2
Alignment explanation
Indices: 1668654--1668683 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1668644 GTAAATTGCG
1668654 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1668684 TTTTTAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1672184 original size:29 final size:30
Alignment explanation
Indices: 1672152--1672225 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 30
1672142 AATATTCAAG
*
1672152 TTAAAAACTTATTTAAACAT-AATTAAAAA
1 TTAAAAACTTATTTAAAAATAAATTAAAAA
* * *
1672181 TTAATAATTTATTTAAAAATAAATTAAATA
1 TTAAAAACTTATTTAAAAATAAATTAAAAA
**
1672211 TTAAATGCTTATTTA
1 TTAAAAACTTATTTA
1672226 TCTATAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
29 17 0.47
30 19 0.53
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (30 bp):
TTAAAAACTTATTTAAAAATAAATTAAAAA
Found at i:1682559 original size:2 final size:2
Alignment explanation
Indices: 1682552--1682584 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1682542 ATTCAAATAG
1682552 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1682585 TACTTTTAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1683661 original size:18 final size:18
Alignment explanation
Indices: 1683638--1683722 Score: 63
Period size: 19 Copynumber: 4.8 Consensus size: 18
1683628 CAAATCGAAT
1683638 TTAAATATTTAAAATTAA
1 TTAAATATTTAAAATTAA
1683656 TTAAATATTTTAAAATT--
1 TTAAATA-TTTAAAATTAA
** *
1683673 TT-TTTA-TAAAAATTAAA
1 TTAAATATTTAAAATT-AA
1683690 TTTAAATATTT-AAATTAA
1 -TTAAATATTTAAAATTAA
*
1683708 TTACATATTTTAAAA
1 TTAAATA-TTTAAAA
1683723 CTTTTTATAC
Statistics
Matches: 51, Mismatches: 7, Indels: 17
0.68 0.09 0.23
Matches are distributed among these distances:
14 7 0.14
16 2 0.04
17 8 0.16
18 14 0.27
19 19 0.37
20 1 0.02
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (18 bp):
TTAAATATTTAAAATTAA
Found at i:1683717 original size:52 final size:53
Alignment explanation
Indices: 1683635--1683764 Score: 192
Period size: 53 Copynumber: 2.5 Consensus size: 53
1683625 ACACAAATCG
* * *
1683635 AATTTAAATATTTAAAATTAATTAAATATTTTAAAATTTTTTTATA-A-AAATTA
1 AATTTAAATATTT-AAATTAATTACATATTTTAAAA-CTTTTTATACAGAAACTA
1683688 AATTTAAATATTTAAATTAATTACATATTTTAAAACTTTTTATACAGAAACTA
1 AATTTAAATATTTAAATTAATTACATATTTTAAAACTTTTTATACAGAAACTA
*
1683741 AATTCAAATATTTAAATTAATTAC
1 AATTTAAATATTTAAATTAATTAC
1683765 GCATTCAGAA
Statistics
Matches: 71, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
51 8 0.11
52 22 0.31
53 41 0.58
ACGTcount: A:0.49, C:0.05, G:0.01, T:0.45
Consensus pattern (53 bp):
AATTTAAATATTTAAATTAATTACATATTTTAAAACTTTTTATACAGAAACTA
Found at i:1683808 original size:91 final size:91
Alignment explanation
Indices: 1683688--1683951 Score: 413
Period size: 91 Copynumber: 2.9 Consensus size: 91
1683678 ATAAAAATTA
* * * *
1683688 AATTTAAATATTTAAATTAATTACATATTTTAAAACTT-TTTATACAGAAACTAAATTCAAATAT
1 AATTCAAACATTTAAATTAATTACGTATTTTAAAACTTCTTT-TACAGAAACTGAATTCAAATAT
* *
1683752 TTAAATTAATTACGCATTCAGAAATCG
65 TTAAACTAATTACGCATTCAGAAACCG
* *
1683779 AATTCAAACATTTAAATTAATTACGTATTTTGAAACTTCTTTTACAGAAACCGAATTCAAATATT
1 AATTCAAACATTTAAATTAATTACGTATTTTAAAACTTCTTTTACAGAAACTGAATTCAAATATT
*
1683844 TAAACTAATTATGCATTCAGAAACCG
66 TAAACTAATTACGCATTCAGAAACCG
* *
1683870 AATTCAAACATTTAAATTAATTACGCATTTTAAAACTTCTTTTACAGAAACTGAATTCAAACATT
1 AATTCAAACATTTAAATTAATTACGTATTTTAAAACTTCTTTTACAGAAACTGAATTCAAATATT
1683935 TAAACTAATTACGCATT
66 TAAACTAATTACGCATT
1683952 TTGGAACTTC
Statistics
Matches: 158, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
91 155 0.98
92 3 0.02
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.37
Consensus pattern (91 bp):
AATTCAAACATTTAAATTAATTACGTATTTTAAAACTTCTTTTACAGAAACTGAATTCAAATATT
TAAACTAATTACGCATTCAGAAACCG
Found at i:1683865 original size:38 final size:38
Alignment explanation
Indices: 1683823--1683898 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
1683813 ACTTCTTTTA
* *
1683823 CAGAAACCGAATTCAAATATTTAAACTAATTATGCATT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATT
*
1683861 CAGAAACCGAATTCAAACATTTAAATTAATTACGCATT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATT
1683899 TTAAAACTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.45, C:0.17, G:0.08, T:0.30
Consensus pattern (38 bp):
CAGAAACCGAATTCAAACATTTAAACTAATTACGCATT
Found at i:1683918 original size:53 final size:53
Alignment explanation
Indices: 1683861--1684875 Score: 751
Period size: 53 Copynumber: 18.7 Consensus size: 53
1683851 ATTATGCATT
* *
1683861 CAGAAACCGAATTCAAACATTTAAATTAATTACGCATTTTAAAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTA
* *
1683914 CAGAAACTGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTA
* * * * *
1683967 CAAAAACCCAATACAAACATTTAAACTAATTATGCATTTTGAGA-TATCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACT-TCTTTTA
* *
1684020 CAGAAACCGAATTCAAAGATTTAAACTAATTACGCATTTTGAAACTT-TTTTGT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTT-A
*
1684073 CAAAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTA
1684126 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTA
* * ** *** **
1684179 CAAAAACCGAATTCAAATATTTAAACTAATTACGCATTCAGAAACCGAATTCAAA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAA-CTTCTT-TTA
* * ** * ** ** **
1684234 CATTTAAA-CTAATT-ACGCATTTTGGAACTTCTTTTACAG-AAATTG-AA-TTC--AAA
1 CA--GAAACCGAATTCAAACA-TTT-AAAC-T-AATTAC-GCATTTTGAAACTTCTTTTA
* * ** * ** *** ***
1684287 CATTTAAA-CTAATT-ACGCATTTTCGAACTTCTTTTACAG-AAACTG-AA-TTCAAATA
1 CA--GAAACCGAATTCAAACA-TTT-AAAC-T-AATTAC-GCATTTTGAAACTTCTTTTA
*** * ** ** * * * **
1684342 TTTAAA-CTAATT-ACGCATTTTGAAACTTCTTTTACAGAAACCGA-ATTCAAACAT-TTAAA
1 CAGAAACCGAATTCAAACA-TTT-AAAC-T-AATTAC-G----C-ATTTTGAAACTTCTTTTA
* * * *
1684401 CTA-ATTA-CGTATTCAGAAACCAAATTCAAACATTTAAACTAATTACGCATTTTGGAATTTCTT
1 C-AGA-AACCGAATT-------CAAA--C--A--TTTAAACTAATTACGCATTTTGAAACTTCTT
1684464 TTA
51 TTA
1684467 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTT-AGAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGA-AACTTCTTTTA
* *
1684520 CAGAAACCGAATTCAAACATTTAAACTAATTACGTATTTTGGAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTA
* *
1684573 CAGAAATCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTA
*
1684626 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTTTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTA
*
1684679 CAGAAACCGAATTTAAACATTTAAACTAATTACGCATTTT-AGAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGA-AACTTCTTTTA
* * * *
1684732 TAGAAACTGAATTCAAACATTTAAACTTATTACGCATTTTGGAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTA
* * *
1684785 CAAAAACCAAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTA
* * * * *
1684838 CACAAACTGAATTTAAAAATTTTAACTAATTACGCATT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATT
1684876 CAGAAACCGA
Statistics
Matches: 811, Mismatches: 105, Indels: 92
0.80 0.10 0.09
Matches are distributed among these distances:
52 6 0.01
53 711 0.88
54 8 0.01
55 8 0.01
56 8 0.01
57 7 0.01
58 5 0.01
59 16 0.02
60 7 0.01
64 1 0.00
65 8 0.01
66 10 0.01
68 1 0.00
69 1 0.00
70 5 0.01
71 1 0.00
72 5 0.01
73 3 0.00
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (53 bp):
CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTA
Found at i:1684150 original size:159 final size:159
Alignment explanation
Indices: 1683861--1687022 Score: 3473
Period size: 159 Copynumber: 20.3 Consensus size: 159
1683851 ATTATGCATT
* * *
1683861 CAGAAACCGAATTCAAACATTTAAATTAATTACGCATTTTAAAACTTCTTTTACAGAAACTGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
* * * *
1683926 TCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTACAAAAACCCAATACAAACATTTAA
66 TCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTAA
*
1683991 ACTAATTATGCATTTTGAGATATCTTTTA
131 ACTAATTACGCATTTTGAGATATCTTTTA
* * *
1684020 CAGAAACCGAATTCAAAGATTTAAACTAATTACGCATTTTGAAACTT-TTTTGTCAAAAACCGAA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTT-ACAGAAACCGAA
1684084 TTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTA
65 TTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTA
*
1684149 AACTAATTACGCATTTTGAAACT-TCTTTTA
130 AACTAATTACGCATTTTGAGA-TATCTTTTA
* *
1684179 CAAAAACCGAATTCAAATATTTAAACTAATTACGC--------A------TT-CAGAAACCGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
* **
1684229 TCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTACAGAAATTGAATTCAAACATTTAA
66 TCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTAA
1684294 ACTAATTACGCATTTTCGA-ACT-TCTTTTA
131 ACTAATTACGCATTTT-GAGA-TATCTTTTA
* *
1684323 CAGAAACTGAATTCAAATATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
*
1684388 TCAAACATTTAAACTAATTACG-----T---A------TT-CAGAAACCAAATTCAAACATTTAA
66 TCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTAA
*
1684438 ACTAATTACGCATTTTG-GAATTTCTTTTA
131 ACTAATTACGCATTTTGAG-ATATCTTTTA
1684467 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTT-AGAACTTCTTTTACAGAAACCGAA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGA-AACTTCTTTTACAGAAACCGAA
* * *
1684531 TTCAAACATTTAAACTAATTACGTATTTTGGAACTTCTTTTACAGAAATCGAATTCAAACATTTA
65 TTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTA
1684596 AACTAATTACGCATTTTG-GA-ACTTCTTTTA
130 AACTAATTACGCATTTTGAGATA--TCTTTTA
*
1684626 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTTTTTTACAGAAACCGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
* * *
1684691 TTAAACATTTAAACTAATTACGCATTTT-AGAACTTCTTTTATAGAAACTGAATTCAAACATTTA
66 TCAAACATTTAAACTAATTACGCATTTTGA-AACTTCTTTTACAGAAACCGAATTCAAACATTTA
*
1684755 AACTTATTACGCATTTTG-GA-ACTTCTTTTA
130 AACTAATTACGCATTTTGAGATA--TCTTTTA
* * * * *
1684785 CAAAAACCAAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTACACAAACTGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
* * *
1684850 TTAAAAATTTTAACTAATTACGC--------A------TT-CAGAAACCGAATTCAAACATTTAA
66 TCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTAA
* *
1684900 ACAAATTATGCATTTTGA-ACCTA-CTTTTA
131 ACTAATTACGCATTTTGAGA--TATCTTTTA
* *
1684929 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTACAGAAATCGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
*
1684994 TCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTACAGAAACCGAATTCAAACATTTAA
66 TCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTAA
*
1685059 ACTAATTACGCATTTTGAAACT-TCTTTTA
131 ACTAATTACGCATTTTGAGA-TATCTTTTA
* *
1685088 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTATAGAAACCGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
* * *
1685153 TCAAACATTTAAACTTATTACGCATTTTGAAACTTTTTTTACAGAAACCAAATTCAAACATTTAA
66 TCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTAA
1685218 ACTAATTACGCATTTTG-GA-ACTTCTTTTA
131 ACTAATTACGCATTTTGAGATA--TCTTTTA
* ** * * *
1685247 CACAAACTAAATTTAAAAATTTTAACTAATTACGC--------A------TT-CAGAAACCGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
* * * *
1685297 TCAAACATTTAAACAAATTATGCATTTTGAACCTACTTTTACAGAAACCGAATTCAAACATTTAA
66 TCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTAA
1685362 ACTAATTACGCATTTTG-GA-ACTTCTTTTA
131 ACTAATTACGCATTTTGAGATA--TCTTTTA
* * *
1685391 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTTTTTTATAGAAACCGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
* * *
1685456 TCAAACATTTAAACTAATTACGTATTTTGGAACTTTTTTTACAGAAACCGAATTCAAACATTTAA
66 TCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTAA
* *
1685521 ACTAATTACCCATTTTTAGA-ACTTCTTTTA
131 ACTAATTACGCATTTTGAGATA--TCTTTTA
* * *
1685551 AAGAAACCGAATTCAAACATTTAAACTAATTACACATTTTGGAACTTCTTTTACAGAAACCGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
* * *
1685616 TCAAACATTTAAACTATTTACGTATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACGTTTAA
66 TCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTAA
*
1685681 ACTAATTACACATTTTGTA-ACT-TCTTTTA
131 ACTAATTACGCATTTTG-AGA-TATCTTTTA
* * * *
1685710 CAGAAACCGAATTCAAACATTTAAACTAATTATGGATTTTGGAATTTCTTTTACAGAAACCGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
* *
1685775 TCAAACATTTAAACTAATTACGCATTTTGAAACTTTTTTTACAAAAACCGAATTCAAACATTTAA
66 TCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTAA
1685840 ACTAATTACGCATTTTG-GA-ACTTCTTTTA
131 ACTAATTACGCATTTTGAGATA--TCTTTTA
* * * * *
1685869 CAGAAACCGAATTCAAATATTTAAACTAATTACGCATTTTGGAACATATTTTACAGAAATCGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
* * *** ** * *
1685934 TCAAAAATTTTAACTAATTACGCATTCAAAAACCGAATTCAAATATTTAAACTTATTA-CGCATT
66 TCAAACATTTAAACTAATTACGCATTTTGAAA-C---TTC---T-TTT--ACAGA-AACCG-A-A
* * * ** *
1685998 TTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTAAACTAATTATGCATTTTGGAACTTCTT
118 TTCAAA---CATTT----AAA-CTAATT-ACGCA-TT----T--TGA-G-A---T---A--TCTT
1686063 TTA
157 TTA
* *
1686066 CAGAAATCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTACAGAAACCGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
*
1686131 TCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAATCGAATTCAAACATTTAA
66 TCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTAA
*
1686196 ACTAATTACGCATTTTGAAACT-TCTTTTA
131 ACTAATTACGCATTTTGAGA-TATCTTTTA
* * * *
1686225 CAGAAACCGAATTCAAACATTTAAACTAATTATGCGTTTTGTAACTTCTTTTACGGAAACCGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
* * * *
1686290 TCGAACATTTAAACTAATTACGCATTTTGTAACTTCTTTTACTGAAACCAAATTCAAACATTTAA
66 TCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTAA
1686355 ACTAATTACGC----------A----TT-
131 ACTAATTACGCATTTTGAGATATCTTTTA
* *
1686369 CAGAAACCGAATT-AAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTACAAAAACCGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
*
1686433 TCAAACATTTAAACTAATTACGCATTTT-AGAACTTCTTTTACAAAAACCGAATTCAAACATTTA
66 TCAAACATTTAAACTAATTACGCATTTTGA-AACTTCTTTTACAGAAACCGAATTCAAACATTTA
1686497 AACTAATTACGCATTTT-AGA-ACTTCTTTTA
130 AACTAATTACGCATTTTGAGATA--TCTTTTA
* * * * *
1686527 CAGAAACCGAATTCAAACATTTAAATTATTTACGTATTTTAAAACTTCTTTTACAGAAACAGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
1686592 TCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTAA
66 TCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTAA
*
1686657 ACTAATTA--C----------A-C-ATT-
131 ACTAATTACGCATTTTGAGATATCTTTTA
* * * *
1686671 CAGAAACCGAATTGAAACATTTAAACTAATTATGCATTTTGAAACTTTTTTTACAAAAACCGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
*
1686736 TCAAACATTTAAACTAATTACGC--------A-----TTT--AGAAATCGAATTCAAACATTTAA
66 TCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTAA
1686786 ACTAATTACGCATTTTG-GA-ACTTCTTTTA
131 ACTAATTACGCATTTTGAGATA--TCTTTTA
* * **
1686815 CAGAAACCCAATACAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAATTGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
*
1686880 TCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTTTACAGAAACCGAATTCAAATATTT
66 TCAAACATTTAAACTAATTACGCATTTTGAAACTTC--TTTTACAGAAACCGAATTCAAACATTT
* * * * *
1686945 AAACAAATTACGTATTTTGAAACTTTTTTTTA
129 AAACTAATTACGCATTTTGAGA-TATCTTTTA
* ** *
1686977 TAGAAACCGAATTCAAATTTTTAAACTAATTACGCATTTAGAAACT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACT
1687023 GATTTCAAAC
Statistics
Matches: 2598, Mismatches: 223, Indels: 361
0.82 0.07 0.11
Matches are distributed among these distances:
129 30 0.01
131 4 0.00
136 1 0.00
139 1 0.00
142 1 0.00
143 121 0.05
144 682 0.26
145 12 0.00
146 3 0.00
147 1 0.00
149 2 0.00
151 5 0.00
152 5 0.00
154 1 0.00
157 3 0.00
158 28 0.01
159 1281 0.49
160 155 0.06
161 37 0.01
162 47 0.02
163 2 0.00
165 1 0.00
166 1 0.00
167 4 0.00
169 7 0.00
170 2 0.00
171 6 0.00
174 4 0.00
175 2 0.00
176 3 0.00
177 5 0.00
178 6 0.00
179 5 0.00
180 3 0.00
181 2 0.00
182 4 0.00
185 6 0.00
186 2 0.00
187 6 0.00
189 4 0.00
190 2 0.00
193 3 0.00
196 1 0.00
197 97 0.04
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (159 bp):
CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAAT
TCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCAAACATTTAA
ACTAATTACGCATTTTGAGATATCTTTTA
Found at i:1684224 original size:38 final size:38
Alignment explanation
Indices: 1684182--1684254 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
1684172 TCTTTTACAA
*
1684182 AAACCGAATTCAAATATTTAAACTAATTACGCATTCAG
1 AAACCGAATTCAAACATTTAAACTAATTACGCATTCAG
1684220 AAACCGAATTCAAACATTTAAACTAATTACGCATT
1 AAACCGAATTCAAACATTTAAACTAATTACGCATT
1684255 TTGGAACTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.45, C:0.19, G:0.07, T:0.29
Consensus pattern (38 bp):
AAACCGAATTCAAACATTTAAACTAATTACGCATTCAG
Found at i:1684235 original size:91 final size:91
Alignment explanation
Indices: 1684126--1684307 Score: 319
Period size: 91 Copynumber: 2.0 Consensus size: 91
1684116 ACTTCTTTTA
1684126 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAAAAACCGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAAAAACCGAAT
*
1684191 TCAAATATTTAAACTAATTACGCATT
66 TCAAACATTTAAACTAATTACGCATT
* * **
1684217 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTACAGAAATTGAAT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAAAAACCGAAT
1684282 TCAAACATTTAAACTAATTACGCATT
66 TCAAACATTTAAACTAATTACGCATT
1684308 TTCGAACTTC
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 86 1.00
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (91 bp):
CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAAAAACCGAAT
TCAAACATTTAAACTAATTACGCATT
Found at i:1684888 original size:38 final size:38
Alignment explanation
Indices: 1684841--1684913 Score: 92
Period size: 38 Copynumber: 1.9 Consensus size: 38
1684831 TCTTTTACAC
* * * *
1684841 AAACTGAATTTAAAAATTTTAACTAATTACGCATTCAG
1 AAACCGAATTCAAAAATTTAAACAAATTACGCATTCAG
* *
1684879 AAACCGAATTCAAACATTTAAACAAATTATGCATT
1 AAACCGAATTCAAAAATTTAAACAAATTACGCATT
1684914 TTGAACCTAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 29 1.00
ACGTcount: A:0.47, C:0.15, G:0.07, T:0.32
Consensus pattern (38 bp):
AAACCGAATTCAAAAATTTAAACAAATTACGCATTCAG
Found at i:1684934 original size:53 final size:53
Alignment explanation
Indices: 1684876--1685284 Score: 658
Period size: 53 Copynumber: 7.7 Consensus size: 53
1684866 ATTACGCATT
* * *
1684876 CAGAAACCGAATTCAAACATTTAAACAAATTATGCATTTT-GAACCTACTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAA-CTTCTTTTA
1684929 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
*
1684982 CAGAAATCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
*
1685035 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
1685088 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
* * * *
1685141 TAGAAACCGAATTCAAACATTTAAACTTATTACGCATTTTGAAACTTTTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
*
1685194 CAGAAACCAAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
* ** * * *
1685247 CACAAACTAAATTTAAAAATTTTAACTAATTACGCATT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATT
1685285 CAGAAACCGA
Statistics
Matches: 334, Mismatches: 21, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
53 331 0.99
54 3 0.01
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.35
Consensus pattern (53 bp):
CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
Found at i:1685343 original size:53 final size:53
Alignment explanation
Indices: 1685285--1685959 Score: 1064
Period size: 53 Copynumber: 12.7 Consensus size: 53
1685275 ATTACGCATT
* * *
1685285 CAGAAACCGAATTCAAACATTTAAACAAATTATGCATTTT-GAACCTACTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAA-CTTCTTTTA
1685338 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
*
1685391 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTTTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
* * *
1685444 TAGAAACCGAATTCAAACATTTAAACTAATTACGTATTTTGGAACTTTTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
* *
1685497 CAGAAACCGAATTCAAACATTTAAACTAATTACCCATTTTTAGAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCA-TTTTGGAACTTCTTTTA
* *
1685551 AAGAAACCGAATTCAAACATTTAAACTAATTACACATTTTGGAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
* * *
1685604 CAGAAACCGAATTCAAACATTTAAACTATTTACGTATTTTGAAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
* * *
1685657 CAGAAACCGAATTCAAACGTTTAAACTAATTACACATTTTGTAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
* * *
1685710 CAGAAACCGAATTCAAACATTTAAACTAATTATGGATTTTGGAATTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
* *
1685763 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTTTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
*
1685816 CAAAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
* * *
1685869 CAGAAACCGAATTCAAATATTTAAACTAATTACGCATTTTGGAACATATTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
* * *
1685922 CAGAAATCGAATTCAAAAATTTTAACTAATTACGCATT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATT
1685960 CAAAAACCGA
Statistics
Matches: 575, Mismatches: 45, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
53 523 0.91
54 52 0.09
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.35
Consensus pattern (53 bp):
CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
Found at i:1686026 original size:53 final size:53
Alignment explanation
Indices: 1685963--1686368 Score: 677
Period size: 53 Copynumber: 7.7 Consensus size: 53
1685953 ACGCATTCAA
* *
1685963 AAACCGAATTCAAATATTTAAACTTATTACGCATTTTGAAACTTCTTTTACAG
1 AAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAG
* *
1686016 AAACCGAATTCAAACATTTAAACTAATTATGCATTTTGGAACTTCTTTTACAG
1 AAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAG
* *
1686069 AAATCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTACAG
1 AAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAG
1686122 AAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAG
1 AAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAG
*
1686175 AAATCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAG
1 AAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAG
* * * *
1686228 AAACCGAATTCAAACATTTAAACTAATTATGCGTTTTGTAACTTCTTTTACGG
1 AAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAG
* * *
1686281 AAACCGAATTCGAACATTTAAACTAATTACGCATTTTGTAACTTCTTTTACTG
1 AAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAG
*
1686334 AAACCAAATTCAAACATTTAAACTAATTACGCATT
1 AAACCGAATTCAAACATTTAAACTAATTACGCATT
1686369 CAGAAACCGA
Statistics
Matches: 333, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 333 1.00
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.36
Consensus pattern (53 bp):
AAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAG
Found at i:1686027 original size:91 final size:91
Alignment explanation
Indices: 1685872--1686050 Score: 286
Period size: 91 Copynumber: 2.0 Consensus size: 91
1685862 TCTTTTACAG
* *
1685872 AAACCGAATTCAAATATTTAAACTAATTACGCATTTTGGAACATATTTTACAGAAATCGAATTCA
1 AAACCGAATTCAAATATTTAAACTAATTACGCATTTTGAAACATATTTTACAGAAACCGAATTCA
*
1685937 AAAATTTTAACTAATTACGCATTCAA
66 AAAATTTAAACTAATTACGCATTCAA
* * *
1685963 AAACCGAATTCAAATATTTAAACTTATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCA
1 AAACCGAATTCAAATATTTAAACTAATTACGCATTTTGAAACATATTTTACAGAAACCGAATTCA
* *
1686028 AACATTTAAACTAATTATGCATT
66 AAAATTTAAACTAATTACGCATT
1686051 TTGGAACTTC
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
91 80 1.00
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.34
Consensus pattern (91 bp):
AAACCGAATTCAAATATTTAAACTAATTACGCATTTTGAAACATATTTTACAGAAACCGAATTCA
AAAATTTAAACTAATTACGCATTCAA
Found at i:1686387 original size:37 final size:38
Alignment explanation
Indices: 1686333--1686405 Score: 130
Period size: 37 Copynumber: 1.9 Consensus size: 38
1686323 TTCTTTTACT
1686333 GAAACCAAATTCAAACATTTAAACTAATTACGCATTCA
1 GAAACCAAATTCAAACATTTAAACTAATTACGCATTCA
*
1686371 GAAACCGAATT-AAACATTTAAACTAATTACGCATT
1 GAAACCAAATTCAAACATTTAAACTAATTACGCATT
1686406 TTGGAACTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
37 24 0.71
38 10 0.29
ACGTcount: A:0.47, C:0.19, G:0.07, T:0.27
Consensus pattern (38 bp):
GAAACCAAATTCAAACATTTAAACTAATTACGCATTCA
Found at i:1686405 original size:17 final size:17
Alignment explanation
Indices: 1686348--1686406 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 17
1686338 CAAATTCAAA
1686348 CATTTAAACTAATTACG
1 CATTTAAACTAATTACG
* * **
1686365 CATTCAGAAACCGAATTAAA
1 CATT--TAAA-CTAATTACG
1686385 CATTTAAACTAATTACG
1 CATTTAAACTAATTACG
1686402 CATTT
1 CATTT
1686407 TGGAACTTCT
Statistics
Matches: 31, Mismatches: 8, Indels: 6
0.69 0.18 0.13
Matches are distributed among these distances:
17 15 0.48
18 3 0.10
19 3 0.10
20 10 0.32
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.32
Consensus pattern (17 bp):
CATTTAAACTAATTACG
Found at i:1686434 original size:90 final size:91
Alignment explanation
Indices: 1686280--1686852 Score: 531
Period size: 91 Copynumber: 6.0 Consensus size: 91
1686270 TTCTTTTACG
* * **
1686280 GAAACCGAATTCGAACATTTAAACTAATTACGCATTTTGTAACTTCTTTTACTGAAACCAAATTC
1 GAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTACAAAAACCAAATTC
1686345 AAACATTTAAACTAATTACGCATTCA
66 AAACATTTAAACTAATTACGCATTCA
*
1686371 GAAACCGAATT-AAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTACAAAAACCGAATTC
1 GAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTACAAAAACCAAATTC
*
1686435 AAACATTTAAACTAATTACGCATTTTA
66 AAACATTTAAACTAATTACGCA-TTCA
** ** * *
1686462 GAACTTCTTTTACAAAAACCGAATTCAAACATTTAAACTAATTACGCATTTTAGAACTTCTTTTA
1 GAA--------ACCGAATTC-AA---ACA--TTTAAACTAATTACGCATTTTGGAACTTCTTTTA
* * * * * *
1686527 CAGAAACCGAATTCAAACATTTAAATTATTTACGTATTTTA
52 CAAAAACCAAATTCAAACATTTAAACTAATTACGCA-TTCA
** *
1686568 -AAACTTC-TTTTACAGAAACAGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTT
1 GAAAC--CGAATT-C--AAAC---ATT--------TAAACTAATTACGCATTTTGGAACTTCTTT
* * *
1686631 TACAGAAACCGAATTCAAACATTTAAACTAATTACACATTCA
50 TACAAAAACCAAATTCAAACATTTAAACTAATTACGCATTCA
* * * * *
1686673 GAAACCGAATTGAAACATTTAAACTAATTATGCATTTTGAAACTTTTTTTACAAAAACCGAATTC
1 GAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTACAAAAACCAAATTC
*
1686738 AAACATTTAAACTAATTACGCATTTA
66 AAACATTTAAACTAATTACGCATTCA
* * * *
1686764 GAAATCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTACAGAAACCCAATAC
1 GAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTACAAAAACCAAATTC
1686829 AAACATTTAAACTAATTACGCATT
66 AAACATTTAAACTAATTACGCATT
1686853 TTGAAACTTC
Statistics
Matches: 404, Mismatches: 45, Indels: 66
0.78 0.09 0.13
Matches are distributed among these distances:
90 70 0.17
91 165 0.41
97 3 0.01
98 2 0.00
99 8 0.02
100 4 0.01
101 2 0.00
102 4 0.01
104 3 0.01
105 7 0.02
106 136 0.34
ACGTcount: A:0.41, C:0.18, G:0.07, T:0.34
Consensus pattern (91 bp):
GAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTACAAAAACCAAATTC
AAACATTTAAACTAATTACGCATTCA
Found at i:1686444 original size:53 final size:53
Alignment explanation
Indices: 1686369--1686670 Score: 500
Period size: 53 Copynumber: 5.7 Consensus size: 53
1686359 ATTACGCATT
*
1686369 CAGAAACCGAATT-AAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTAGAACTTCTTTTA
*
1686421 CAAAAACCGAATTCAAACATTTAAACTAATTACGCATTTTAGAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTAGAACTTCTTTTA
*
1686474 CAAAAACCGAATTCAAACATTTAAACTAATTACGCATTTTAGAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTAGAACTTCTTTTA
* * * *
1686527 CAGAAACCGAATTCAAACATTTAAATTATTTACGTATTTTAAAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTAGAACTTCTTTTA
*
1686580 CAGAAACAGAATTCAAACATTTAAACTAATTACGCATTTT-GAAACTTCTTTTA
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTAG-AACTTCTTTTA
*
1686633 CAGAAACCGAATTCAAACATTTAAACTAATTACACATT
1 CAGAAACCGAATTCAAACATTTAAACTAATTACGCATT
1686671 CAGAAACCGA
Statistics
Matches: 234, Mismatches: 14, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
52 12 0.05
53 222 0.95
ACGTcount: A:0.41, C:0.18, G:0.07, T:0.34
Consensus pattern (53 bp):
CAGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTAGAACTTCTTTTA
Found at i:1686509 original size:106 final size:106
Alignment explanation
Indices: 1686372--1687022 Score: 740
Period size: 106 Copynumber: 6.4 Consensus size: 106
1686362 ACGCATTCAG
* *
1686372 AAACCGAATT-AAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTACAAAAACCGAATTCA
1 AAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCA
1686436 AACATTTAAACTAATTACGCATTTTAGAACTTCTTTTACAA
66 AACATTTAAACTAATTACGCATTTTAGAACTTCTTTTACAA
1686477 AAACCGAATTCAAACATTTAAACTAATTACGCATTTT-AGAACTTCTTTTACAGAAACCGAATTC
1 AAACCGAATTCAAACATTTAAACTAATTACGCATTTTGA-AACTTCTTTTACAGAAACCGAATTC
* * * * *
1686541 AAACATTTAAATTATTTACGTATTTTAAAACTTCTTTTACAG
65 AAACATTTAAACTAATTACGCATTTTAGAACTTCTTTTACAA
*
1686583 AAACAGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCA
1 AAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCA
* *
1686648 AACATTTAAACTAATTA--C-----A-CA-TTC----A-GA
66 AACATTTAAACTAATTACGCATTTTAGAACTTCTTTTACAA
* * * *
1686675 AA-CCGAATTGAAACATTTAAACTAATTATGCATTTTGAAACTTTTTTTACAAAAACCGAATTCA
1 AAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCA
1686739 AACATTTAAACTAATTACGCA-TTTAG-------------A
66 AACATTTAAACTAATTACGCATTTTAGAACTTCTTTTACAA
* * * *
1686766 AA-TCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTACAGAAACCCAATACA
1 AAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCA
*
1686830 AACATTTAAACTAATTACGCATTTT-GAAACTTCTTTTACAG
66 AACATTTAAACTAATTACGCATTTTAG-AACTTCTTTTACAA
**
1686871 AAATTGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTTTACAGAAACCGAATT
1 AAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTC--TTTTACAGAAACCGAATT
* * * * * *
1686936 CAAATATTTAAACAAATTACGTATTTT-GAAACTTTTTTTTATAG
64 CAAACATTTAAACTAATTACGCATTTTAG-AAC-TTCTTTTACAA
** *
1686980 AAACCGAATTCAAATTTTTAAACTAATTACGCATTTAGAAACT
1 AAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACT
1687023 GATTTCAAAC
Statistics
Matches: 475, Mismatches: 42, Indels: 54
0.83 0.07 0.09
Matches are distributed among these distances:
91 153 0.32
92 5 0.01
93 2 0.00
97 4 0.01
98 1 0.00
99 1 0.00
105 12 0.03
106 204 0.43
107 1 0.00
108 45 0.09
109 47 0.10
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.35
Consensus pattern (106 bp):
AAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTACAGAAACCGAATTCA
AACATTTAAACTAATTACGCATTTTAGAACTTCTTTTACAA
Found at i:1686696 original size:19 final size:18
Alignment explanation
Indices: 1686636--1686696 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 18
1686626 TCTTTTACAG
1686636 AAACCGAATTCAAACATTT
1 AAACCGAATT-AAACATTT
* * *
1686655 AAA-CTAATTACACATTCAG
1 AAACCGAATTAAACATT--T
1686674 AAACCGAATTGAAACATTT
1 AAACCGAATT-AAACATTT
1686693 AAAC
1 AAAC
1686697 TAATTATGCA
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
17 6 0.19
18 5 0.16
19 10 0.31
20 5 0.16
21 6 0.19
ACGTcount: A:0.49, C:0.20, G:0.07, T:0.25
Consensus pattern (18 bp):
AAACCGAATTAAACATTT
Found at i:1686763 original size:17 final size:17
Alignment explanation
Indices: 1686741--1686800 Score: 57
Period size: 17 Copynumber: 3.3 Consensus size: 17
1686731 CGAATTCAAA
1686741 CATTTAAACTAATTACG
1 CATTTAAACTAATTACG
* **
1686758 CATTTAGAAATCGAATTCAAA
1 CATTT--AAA-CTAATT-ACG
1686779 CATTTAAACTAATTACG
1 CATTTAAACTAATTACG
1686796 CATTT
1 CATTT
1686801 TGGAACTTCT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
17 11 0.33
18 5 0.15
19 6 0.18
20 5 0.15
21 6 0.18
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.35
Consensus pattern (17 bp):
CATTTAAACTAATTACG
Found at i:1686833 original size:53 final size:53
Alignment explanation
Indices: 1686763--1687022 Score: 367
Period size: 53 Copynumber: 4.8 Consensus size: 53
1686753 TTACGCATTT
* *
1686763 AGAAATCGAATTCAAACATTTAAACTAATTACGCATTTTGGAACTTCTTTTAC
1 AGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTAC
* *
1686816 AGAAACCCAATACAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTAC
1 AGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTAC
**
1686869 AGAAATTGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTTTAC
1 AGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTC--TTTTAC
* * * * *
1686924 AGAAACCGAATTCAAATATTTAAACAAATTACGTATTTTGAAACTTTTTTTTAT
1 AGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAAC-TTCTTTTAC
** *
1686978 AGAAACCGAATTCAAATTTTTAAACTAATTACGCATTTAGAAACT
1 AGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACT
1687023 GATTTCAAAC
Statistics
Matches: 185, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
53 93 0.50
54 45 0.24
55 45 0.24
56 2 0.01
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (53 bp):
AGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTAC
Found at i:1687015 original size:19 final size:19
Alignment explanation
Indices: 1686993--1687060 Score: 59
Period size: 19 Copynumber: 3.6 Consensus size: 19
1686983 CCGAATTCAA
*
1686993 ATTTTTAAACTAATTACGC
1 ATTTTGAAACTAATTACGC
* * **
1687012 ATTTAGAAACTGATTTCAAAC
1 ATTTTGAAACT-AATT-ACGC
1687033 A-TTT-AAACTAATTACGC
1 ATTTTGAAACTAATTACGC
1687050 ATTTTGAAACT
1 ATTTTGAAACT
1687061 TCTTTTACAG
Statistics
Matches: 36, Mismatches: 9, Indels: 8
0.68 0.17 0.15
Matches are distributed among these distances:
17 3 0.08
18 6 0.17
19 19 0.53
20 5 0.14
21 3 0.08
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (19 bp):
ATTTTGAAACTAATTACGC
Found at i:1687030 original size:38 final size:38
Alignment explanation
Indices: 1686977--1687060 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
1686967 CTTTTTTTTA
* **
1686977 TAGAAACCGAATTCAAATTTTTAAACTAATTACGCATT
1 TAGAAACTGAATTCAAACATTTAAACTAATTACGCATT
*
1687015 TAGAAACTGATTTCAAACATTTAAACTAATTACGCATT
1 TAGAAACTGAATTCAAACATTTAAACTAATTACGCATT
*
1687053 TTGAAACT
1 TAGAAACT
1687061 TCTTTTACAG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (38 bp):
TAGAAACTGAATTCAAACATTTAAACTAATTACGCATT
Found at i:1687083 original size:53 final size:53
Alignment explanation
Indices: 1687016--1687207 Score: 305
Period size: 53 Copynumber: 3.6 Consensus size: 53
1687006 TTACGCATTT
* *
1687016 AGAAACTGATTTCAAACATTTAAACTAATTACGCATTTTGAAACTTCTTTTAC
1 AGAAACTGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTTTTTTAC
*
1687069 AGAAACTGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTTTTTTAT
1 AGAAACTGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTTTTTTAC
* *
1687122 AGAAACCGAATTCAAACATTTAAACTAATTACGCATTTTGAAATTTTTTTTAC
1 AGAAACTGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTTTTTTAC
* *
1687175 A-AAAATCGAATTCAAACAATTAAACTAATTACG
1 AGAAACT-GAATTCAAACATTTAAACTAATTACG
1687208 TAGAATATGA
Statistics
Matches: 129, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
52 3 0.02
53 126 0.98
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.36
Consensus pattern (53 bp):
AGAAACTGAATTCAAACATTTAAACTAATTACGCATTTTGAAACTTTTTTTAC
Found at i:1687105 original size:91 final size:92
Alignment explanation
Indices: 1686924--1687113 Score: 274
Period size: 91 Copynumber: 2.1 Consensus size: 92
1686914 TCTTTTTTAC
* * * * *
1686924 AGAAACCGAATTCAAATATTTAAACAAATTACGTATTTTGAAACTTTTTTTTATAGAAACCGAAT
1 AGAAACTGAATTCAAACATTTAAACAAATTACGCATTTTGAAACTTTCTTTTACAGAAACCGAAT
**
1686989 TCAAATTTTTAAACTAATTACGCATTT
66 TCAAACATTTAAACTAATTACGCATTT
* * *
1687016 AGAAACTGATTTCAAACATTTAAACTAATTACGCATTTTGAAAC-TTCTTTTACAGAAACTGAAT
1 AGAAACTGAATTCAAACATTTAAACAAATTACGCATTTTGAAACTTTCTTTTACAGAAACCGAAT
1687080 TCAAACATTTAAACTAATTACGCATTT
66 TCAAACATTTAAACTAATTACGCATTT
*
1687107 TGAAACT
1 AGAAACT
1687114 TTTTTTATAG
Statistics
Matches: 87, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
91 48 0.55
92 39 0.45
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (92 bp):
AGAAACTGAATTCAAACATTTAAACAAATTACGCATTTTGAAACTTTCTTTTACAGAAACCGAAT
TCAAACATTTAAACTAATTACGCATTT
Done.