genome.fa.s640.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold640
Parameters: 2 7 7 80 10 50 1000
Length:  76329

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435--464	3	10.3	3	92	7	53	33	0	0	66	0.92
435--461	14	1.9	14	100	0	54	33	0	0	66	0.92
1243--1309	21	3.2	22	70	20	70	67	0	0	32	0.91
1245--1308	19	3.2	19	77	12	74	70	0	0	29	0.88
2751--2809	15	4.0	15	72	10	50	54	1	1	42	1.20
2849--2899	15	3.3	15	81	5	66	50	0	1	47	1.12
2851--2899	16	3.1	16	77	13	57	53	0	2	44	1.12
2757--2958	89	2.3	87	79	12	205	49	3	2	44	1.34
2929--2970	15	2.8	16	85	7	52	45	0	0	54	0.99
3459--3538	28	2.9	28	80	9	74	47	0	0	52	1.00
3493--3533	17	2.4	17	77	22	50	51	0	0	48	1.00
3502--3546	23	2.0	23	82	8	56	55	0	0	44	0.99
3492--3551	19	3.4	16	80	19	59	53	0	0	46	1.00
4168--4244	40	1.9	40	86	5	111	54	5	3	36	1.41
4187--4866	73	9.5	72	80	7	575	54	11	1	32	1.45
4845--4923	38	2.1	39	85	7	108	62	5	0	32	1.17
4987--5020	13	2.5	13	95	4	59	55	5	0	38	1.24
5037--5082	19	2.4	19	92	0	74	41	21	4	32	1.73
7475--7521	18	2.6	18	80	10	51	40	2	0	57	1.11
7477--7529	27	2.0	26	81	3	61	45	3	0	50	1.19
8436--8517	16	5.1	16	74	10	69	40	3	1	54	1.26
9753--9830	31	2.5	31	87	0	102	42	3	1	52	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9803--9848	24	1.9	24	95	0	83	47	2	0	50	1.13
9778--9886	55	2.0	56	82	8	134	44	2	0	51	1.22
10243--10315	28	2.7	27	79	10	78	53	0	1	45	1.09
10254--10314	26	2.5	24	78	19	63	55	0	1	42	1.09
10528--10575	23	2.0	24	84	4	62	58	0	0	41	0.98
13198--13222	2	12.5	2	100	0	50	48	0	0	52	1.00
15311--15336	6	4.3	6	100	0	52	15	34	15	34	1.89
16814--16858	2	22.5	2	100	0	90	51	0	0	48	1.00
21651--21688	2	18.5	2	89	5	58	44	0	5	50	1.24
30787--30911	52	2.4	52	94	0	214	27	18	18	36	1.94
30787--30931	52	2.8	51	88	4	202	28	17	18	34	1.94
30920--30944	13	1.9	13	100	0	50	36	16	16	32	1.90
31008--31032	13	1.9	13	100	0	50	32	16	16	36	1.90
30987--31052	32	2.0	33	88	2	98	39	13	12	34	1.82
39625--39667	19	2.3	19	80	8	52	39	6	2	51	1.42
40475--40601	67	1.9	68	83	4	168	39	9	25	25	1.86
40614--41229	49	12.7	49	84	6	819	29	17	26	25	1.98
41229--41466	33	7.2	33	88	5	340	18	17	34	28	1.94
41230--41465	67	3.6	67	88	5	347	18	17	35	28	1.94
41448--42073	71	9.2	70	82	11	689	33	12	34	20	1.89
41468--42088	34	18.4	34	83	9	677	34	12	33	19	1.89
42079--42135	30	1.9	30	96	0	105	31	19	24	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50333--50457	52	2.4	52	94	0	214	27	18	18	36	1.94
50333--50477	52	2.8	51	88	4	202	28	17	18	34	1.94
50466--50490	13	1.9	13	100	0	50	36	16	16	32	1.90
50554--50578	13	1.9	13	100	0	50	32	16	16	36	1.90
50533--50598	32	2.0	33	88	2	98	39	13	12	34	1.82
59181--59223	19	2.3	19	80	8	52	39	6	2	51	1.42
60029--60155	67	1.9	68	83	4	168	39	9	25	25	1.86
60168--60783	49	12.7	49	84	6	819	29	17	26	25	1.98
60783--61017	33	7.2	33	87	6	338	18	17	34	28	1.94
60776--61017	63	3.8	65	86	6	343	18	17	34	29	1.94
61019--61635	34	18.4	34	82	10	625	33	12	33	19	1.90
61019--61622	138	4.5	136	80	11	681	33	12	34	19	1.89
61418--61621	71	2.9	71	87	7	276	33	12	33	20	1.90
69872--69996	52	2.4	52	94	0	214	27	18	18	36	1.94
69872--70016	52	2.8	51	88	4	202	28	17	18	34	1.94
70005--70029	13	1.9	13	100	0	50	36	16	16	32	1.90
70094--70118	13	1.9	13	100	0	50	32	16	16	36	1.90
70073--70138	32	2.0	33	88	2	98	39	13	12	34	1.82

Tables:   1

The End!