genome.fa.s644.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold644
Parameters: 2 7 7 80 10 50 1000
Length:  70394

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97--178	28	2.9	28	82	7	96	24	31	17	26	1.97
5132--5173	13	3.2	13	93	0	75	28	16	16	38	1.91
7789--7841	20	2.7	20	82	5	63	35	13	16	33	1.88
11592--11991	156	2.6	155	80	5	389	38	16	18	27	1.92
11692--12018	156	2.1	155	85	4	417	38	17	17	27	1.92
12459--12502	10	4.5	10	82	5	54	40	2	20	36	1.65
12556--12587	13	2.6	13	90	9	50	18	0	0	81	0.70
14697--14730	3	11.3	3	93	0	59	38	0	32	29	1.58
16052--16104	20	2.7	20	88	5	72	35	16	11	35	1.85
19145--19792	49	13.1	49	82	5	759	23	26	17	32	1.97
19145--19792	150	4.4	149	83	6	753	23	26	17	32	1.97
19237--19792	102	5.5	102	88	3	747	23	26	17	33	1.96
20626--20687	19	3.6	18	73	24	62	35	12	16	35	1.87
20611--20695	32	2.7	32	94	0	143	34	12	17	35	1.88
20773--20901	52	2.5	52	89	0	213	36	16	17	29	1.92
21884--21950	36	1.9	35	85	11	93	31	25	10	32	1.89
22420--22444	13	1.9	13	100	0	50	32	20	16	32	1.94
22514--22570	21	2.6	22	91	5	98	36	8	24	29	1.86
22558--22588	10	3.1	10	90	0	53	41	6	29	22	1.78
22612--22747	53	2.6	53	97	0	254	27	17	18	36	1.94
22665--22787	20	6.6	19	68	21	64	29	16	17	37	1.91
22737--22788	20	2.6	19	85	8	68	32	15	13	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23180--23294	56	2.1	56	98	0	221	31	27	11	29	1.91
24055--24111	20	2.8	20	84	10	71	29	15	15	38	1.89
24170--24195	13	2.0	13	100	0	52	38	15	15	30	1.88
24152--24215	32	2.0	33	87	3	94	40	17	14	28	1.88
25719--25743	13	1.9	13	100	0	50	32	16	16	36	1.90
28929--28995	37	1.9	35	88	11	102	29	25	11	32	1.92
29527--29583	21	2.6	22	91	5	98	36	8	24	29	1.86
29416--29582	57	3.0	55	70	16	137	35	10	21	32	1.87
29571--29601	10	3.1	10	90	0	53	41	6	29	22	1.78
29625--29760	53	2.6	53	96	0	245	27	16	18	36	1.93
29678--29800	20	6.6	19	68	21	64	29	15	17	38	1.90
29750--29801	20	2.6	19	85	8	68	32	15	13	38	1.86
32089--32130	20	2.1	20	100	0	84	40	14	26	19	1.89
32245--32408	51	3.4	49	76	9	133	31	12	27	28	1.92
32466--32582	50	2.3	50	95	0	216	35	9	23	31	1.87
32513--32958	79	5.7	78	79	6	427	33	12	24	29	1.92
32391--32659	128	2.1	126	84	6	348	35	11	23	30	1.90
36022--36102	35	2.2	36	78	8	94	43	12	23	20	1.86
36082--36446	44	8.5	43	75	6	228	41	11	26	21	1.87
36082--36410	130	2.6	131	81	3	366	41	11	26	20	1.87
36082--36467	42	9.0	42	76	9	280	39	11	25	22	1.88
36518--38675	61	35.4	61	79	6	2102	33	19	22	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36518--38673	123	17.7	123	80	6	2065	33	19	22	24	1.97
40241--40276	2	18.0	2	100	0	72	50	0	0	50	1.00
44960--45247	79	3.7	77	84	3	335	32	13	27	27	1.93
44934--45298	158	2.3	158	78	6	416	34	11	25	28	1.91
45228--45347	50	2.4	50	87	1	168	37	10	21	30	1.88
45282--45585	79	3.9	78	78	7	303	35	13	23	27	1.92
45283--45567	158	1.8	157	81	6	351	36	12	22	28	1.91
49962--50015	20	2.7	20	88	11	76	37	16	12	33	1.87
57165--57601	49	8.8	49	82	4	466	32	17	27	23	1.97
57156--57601	101	4.5	99	83	5	472	32	17	27	22	1.96
57644--57830	28	6.7	27	80	6	187	21	16	29	32	1.95
57644--57823	56	3.2	56	86	2	238	20	16	29	33	1.95
57644--57831	84	2.3	82	84	5	234	21	15	30	32	1.95
59259--59314	10	5.2	11	80	10	55	0	3	10	85	0.71
59259--59313	9	5.9	9	85	4	65	0	3	10	85	0.72
59265--59324	29	2.1	29	90	0	93	1	3	13	81	0.89
59268--59327	15	4.2	14	78	16	61	1	3	11	83	0.84
59259--59304	20	2.4	19	88	3	65	0	2	13	84	0.71
59259--59327	24	2.9	23	79	10	68	1	2	13	82	0.85
64154--64179	13	2.0	13	100	0	52	30	15	15	38	1.88
66698--66736	13	3.0	13	92	0	60	35	12	17	33	1.88
66722--66800	20	3.7	20	78	15	77	44	15	15	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68816--68846	15	2.1	15	93	0	53	12	22	16	48	1.80

Tables:   1

The End!