genome.fa.s646.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold646
Parameters: 2 7 7 80 10 50 1000
Length:  66412

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4409--4433	13	1.9	13	100	0	50	32	16	20	32	1.94
4390--4453	32	2.0	33	90	3	103	40	15	15	28	1.88
6985--7059	20	3.8	20	78	0	87	34	13	12	40	1.81
6985--7062	40	2.0	39	87	2	111	34	12	12	39	1.82
7980--8020	17	2.3	19	87	12	68	19	9	9	60	1.55
7991--8025	17	2.1	17	88	0	52	20	14	11	54	1.70
21080--21112	12	2.9	11	91	8	57	90	9	0	0	0.44
21079--21122	19	2.3	18	84	11	52	86	9	2	2	0.75
22345--23627	32	42.2	32	90	5	1551	30	34	18	17	1.94
24155--24229	20	3.8	20	78	0	87	34	13	12	40	1.81
24155--24232	40	2.0	39	87	2	111	34	12	12	39	1.82
29644--29693	21	2.4	22	83	9	61	32	20	0	48	1.50
31431--31473	21	2.0	23	86	9	63	37	4	18	39	1.72
32056--32114	20	3.0	20	82	7	77	37	13	15	33	1.86
32971--33118	36	3.6	36	65	26	98	35	4	4	54	1.42
36036--37135	94	12.1	92	81	6	1113	33	15	8	43	1.76
36059--37135	183	5.9	183	82	6	1111	33	15	8	43	1.76
36036--37135	270	4.0	272	83	5	1276	33	15	8	43	1.76
37597--37673	27	2.8	26	81	15	75	51	0	1	46	1.09
37632--37973	123	2.7	123	83	9	417	54	1	2	42	1.19
38383--38607	117	1.9	117	83	8	291	43	2	1	52	1.24
38729--38777	14	3.3	15	76	23	59	59	4	0	36	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39077--39115	15	2.7	15	84	11	55	38	0	0	61	0.96
39083--39124	15	2.9	15	86	10	52	35	0	0	64	0.94
39471--39522	20	2.6	19	85	11	61	61	0	0	38	0.96
40952--40976	3	8.3	3	100	0	50	0	68	0	32	0.90
41612--41676	24	2.8	24	86	6	80	46	1	6	46	1.37
42473--42542	20	3.4	21	79	13	67	41	0	0	58	0.98
42530--42581	14	3.6	14	76	2	59	34	0	1	63	1.06
42937--43001	31	2.1	31	85	5	87	29	1	0	69	0.98
42952--43004	11	5.3	9	79	16	52	28	0	0	71	0.86
42958--43008	17	3.0	17	82	8	68	29	0	0	70	0.87
43228--43256	2	14.5	2	100	0	58	51	0	0	48	1.00
45218--45277	24	2.6	22	81	5	75	56	1	0	41	1.09
45218--45284	22	2.9	23	82	4	82	56	1	0	41	1.08
45302--45344	13	3.3	13	80	6	52	60	2	4	32	1.30
45280--45322	22	2.0	22	85	0	59	58	0	6	34	1.25
45302--45367	26	2.5	26	79	13	73	54	1	3	40	1.25
45458--45496	11	3.2	12	85	10	53	51	0	0	48	1.00
50298--50337	18	2.2	18	95	0	71	80	5	10	5	1.02
51317--51416	49	2.1	49	82	1	121	34	13	14	39	1.84
51348--51492	50	2.9	50	73	11	134	31	11	13	43	1.79
61250--61276	13	2.1	13	100	0	54	29	14	14	40	1.86
62793--62844	20	2.5	21	81	3	61	44	15	7	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62914--62978	33	2.0	33	90	0	103	35	13	15	35	1.87

Tables:   1

The End!