Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold647
Parameters: 2 7 7 80 10 50 1000
Length:  27309

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2640--2669
3
10.0
3
100
0
60
0
33
0
66
0.92
6359--6383
13
1.9
13
100
0
50
24
0
0
76
0.80
6626--6683
19
3.0
19
73
16
57
44
0
1
53
1.10
6736--6775
8
5.0
8
85
8
55
25
0
0
75
0.81
6905--6977
27
2.7
28
77
14
82
54
0
0
45
0.99
6905--6946
14
3.1
14
75
3
50
57
0
0
42
0.99
6956--6989
17
2.0
17
94
0
59
50
0
0
50
1.00
7178--7209
15
2.0
17
88
11
50
75
0
9
15
1.05
9812--9840
15
1.9
15
100
0
58
79
0
0
20
0.74
10174--10211
20
1.9
20
88
0
58
60
2
0
36
1.11
10178--10310
11
12.4
11
67
13
62
59
0
1
38
1.12
10251--10310
10
5.4
12
77
16
51
63
0
0
36
0.95
10350--10411
21
2.9
21
72
13
54
56
0
0
43
0.99
10292--10422
53
2.3
58
77
13
132
53
0
2
43
1.18
11154--11224
23
3.1
23
100
0
142
26
22
4
46
1.70
13058--13114
30
1.9
29
85
3
78
54
0
0
45
0.99
19047--19117
28
2.6
29
80
12
78
42
0
0
57
0.98
19098--19136
20
2.0
20
84
0
51
41
0
0
58
0.98
19133--19193
6
10.3
6
80
8
56
21
0
0
78
0.75
19104--19188
29
2.8
30
75
10
75
28
0
0
71
0.86
19137--19202
26
2.5
26
83
9
73
21
1
0
77
0.85
19133--19208
9
8.7
9
79
12
63
22
1
0
76
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19095--19205
15
6.9
17
71
20
71
27
0
0
71
0.92
19133--19193
29
2.1
29
87
9
88
21
0
0
78
0.75
19332--19407
20
3.7
21
75
16
61
46
0
2
51
1.15
19369--19444
27
2.6
30
80
16
88
44
2
0
52
1.14
19558--19615
6
9.7
6
94
5
100
15
0
0
84
0.62

Tables:   1

The End!