genome.fa.s649.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold649
Parameters: 2 7 7 80 10 50 1000
Length:  46039

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11583--11711	52	2.5	52	96	0	240	27	19	18	34	1.95
11720--11744	13	1.9	13	100	0	50	36	16	16	32	1.90
11761--11842	32	2.6	32	96	0	146	37	17	10	34	1.85
11787--11841	13	3.8	13	75	25	56	34	18	12	34	1.89
11766--11828	19	3.6	19	70	24	66	38	17	11	33	1.85
12689--12731	13	3.3	13	100	0	86	30	16	13	39	1.87
14837--14905	28	2.4	28	88	7	95	24	26	21	27	1.99
14893--15012	51	2.4	52	87	5	158	30	25	13	30	1.94
14945--15251	157	1.9	158	84	4	415	27	26	14	32	1.94
14945--15251	79	3.9	78	82	5	334	27	26	14	32	1.94
15487--15555	31	2.2	31	97	0	129	39	18	5	36	1.75
16164--16343	87	2.1	87	91	2	290	32	6	26	34	1.81
17056--17099	22	2.0	21	83	12	54	45	6	11	36	1.67
17218--17242	13	1.9	13	100	0	50	32	16	16	36	1.90
17197--17261	32	2.0	33	90	3	105	27	15	16	40	1.89
17789--17942	32	4.8	30	76	16	127	31	14	24	30	1.94
17817--17932	32	3.6	31	81	15	130	29	16	25	29	1.97
17784--17942	64	2.5	65	80	11	184	32	13	24	29	1.94
18954--19008	20	2.8	20	91	0	92	27	16	12	43	1.84
18992--19021	13	2.3	13	100	0	60	30	16	13	40	1.87
19037--19090	20	2.7	20	85	5	74	25	14	14	44	1.84
19074--19103	13	2.3	13	94	0	51	33	16	10	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18955--19152	82	2.4	81	90	1	306	28	16	14	40	1.88
20821--20894	28	2.6	28	86	2	94	21	25	21	31	1.98
20877--20995	51	2.4	52	87	7	158	31	27	12	28	1.93
20928--21235	79	3.9	78	82	4	307	29	25	12	32	1.93
20928--21235	158	1.9	158	82	5	381	29	25	12	32	1.93
29797--29925	52	2.5	52	96	0	231	30	17	17	34	1.93
29797--29945	52	2.9	51	89	4	219	31	17	17	33	1.93
29999--30065	33	2.0	33	85	0	89	40	13	11	34	1.81
30021--30045	13	1.9	13	100	0	50	32	16	16	36	1.90
36781--36821	21	2.0	22	90	9	68	41	17	21	19	1.90
37697--37749	20	2.7	20	100	0	106	37	11	18	32	1.87
37714--37881	52	3.3	50	81	6	185	42	14	16	26	1.86
37939--37992	20	2.6	21	91	2	83	31	18	11	38	1.86
39583--39681	48	2.1	48	98	0	189	32	3	21	43	1.68

Tables:   1

The End!