genome.fa.s650.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold650
Parameters: 2 7 7 80 10 50 1000
Length:  48425

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1440--1475	17	2.1	17	100	0	72	47	16	5	30	1.70
4277--4319	21	2.0	22	90	4	70	48	0	0	51	1.00
4293--4330	18	2.1	19	95	5	69	50	0	0	50	1.00
4277--4335	21	3.0	20	80	14	68	50	0	0	49	1.00
4356--4400	18	2.5	18	81	0	54	64	0	8	26	1.23
4460--4505	17	2.6	17	83	13	58	39	0	0	60	0.97
4467--4502	16	2.2	16	90	9	56	38	0	0	61	0.96
4573--4644	31	2.4	29	80	8	81	62	0	1	36	1.04
6347--6388	15	2.7	16	85	14	61	35	0	0	64	0.94
7540--7579	19	2.0	21	90	9	66	30	0	0	70	0.88
8839--8871	12	2.8	12	90	0	57	54	3	12	30	1.52
10912--10966	22	2.5	22	75	13	60	54	0	0	45	0.99
12148--12181	2	17.0	2	93	0	59	52	0	0	47	1.00
12718--12784	29	2.6	25	74	19	73	43	0	1	55	1.09
12718--12777	29	2.1	29	87	6	86	43	0	1	55	1.10
12718--12816	10	10.6	10	70	16	61	46	1	2	50	1.19
13060--13118	29	2.0	29	93	6	102	33	13	8	44	1.74
13331--13396	28	2.4	27	77	7	69	31	3	4	60	1.32
18606--18638	6	5.3	6	96	3	57	33	30	21	15	1.94
19106--19157	27	1.9	28	84	7	72	50	0	1	48	1.12
19127--19170	22	2.0	22	83	12	56	43	0	0	56	0.99
19101--19160	26	2.4	25	78	10	68	50	0	1	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19353--19410	10	5.9	10	71	18	50	31	6	1	60	1.33
20252--20287	2	18.0	2	100	0	72	50	0	0	50	1.00
20441--20488	5	9.6	5	84	13	55	41	0	0	58	0.98
20448--20488	21	2.0	21	85	9	57	39	0	0	60	0.96
20551--20606	6	10.0	6	76	18	50	51	1	0	46	1.11
20514--20610	16	6.2	16	75	12	87	52	5	1	41	1.30
20861--20929	24	3.0	22	83	12	77	44	0	0	55	0.99
20852--20929	31	2.5	31	80	10	88	46	0	0	53	1.00
20857--20924	14	4.7	15	69	16	54	47	0	0	52	1.00
21294--21354	24	2.6	23	85	12	79	39	0	0	60	0.97
21280--21363	24	3.6	22	76	17	73	44	0	0	55	0.99
21586--21638	12	4.5	12	77	11	56	47	0	0	52	1.00
22404--22448	23	2.0	23	81	0	54	44	6	2	46	1.42
22655--22705	19	2.7	19	82	11	61	43	0	0	56	0.99
26672--26714	22	2.0	22	90	0	68	46	9	4	39	1.57
27188--27220	3	11.0	3	93	0	57	33	3	0	63	1.10
27384--27438	28	2.0	27	85	3	74	47	3	0	49	1.19
27429--27501	31	2.3	30	81	6	83	45	8	0	46	1.33
27490--27550	6	10.8	6	75	19	60	29	3	0	67	1.07
27493--27550	23	2.6	22	79	15	66	29	3	0	67	1.07
27727--27761	12	2.8	13	86	8	54	77	2	5	14	1.07
28446--28476	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29120--29154	17	2.1	17	100	0	70	40	25	11	22	1.88
32927--32968	2	22.0	2	90	9	70	50	0	0	50	1.00
33291--33316	3	8.7	3	100	0	52	30	34	0	34	1.58
33661--33705	22	2.0	22	83	8	56	42	0	0	57	0.98
33673--33710	18	2.1	18	90	0	58	39	0	0	60	0.97
33677--33759	10	8.6	10	73	17	59	37	0	0	62	0.95
33677--33808	28	4.6	29	69	16	87	39	0	0	60	0.97
33687--33810	34	3.8	34	72	18	100	38	0	0	61	0.96
33668--33863	31	6.2	31	67	19	86	36	0	1	62	1.02
33716--33827	12	8.8	12	70	19	59	35	0	0	64	0.94
34583--34651	12	5.6	12	72	17	61	63	0	1	34	1.03
34572--34649	24	3.1	23	82	12	84	65	0	1	33	1.01
35240--35271	15	2.1	16	88	11	50	37	6	0	56	1.25
37061--37137	20	4.0	20	71	10	70	44	0	1	54	1.08
37054--37127	38	1.9	38	89	5	114	43	0	1	55	1.08
38497--38533	2	18.5	2	100	0	74	48	0	0	51	1.00
38803--38852	26	1.9	26	83	0	64	24	4	2	70	1.15
38934--38961	4	7.0	4	100	0	56	25	0	0	75	0.81
39018--39066	21	2.3	21	82	10	55	51	2	4	42	1.32
40763--40823	29	2.1	28	82	8	70	45	1	1	50	1.21
40776--40844	10	7.1	10	76	18	58	49	0	0	50	1.00
40799--40867	30	2.3	30	80	5	77	44	2	0	52	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41220--41276	24	2.3	24	85	8	71	64	3	0	31	1.10
41202--41292	18	4.6	18	71	24	67	61	2	0	36	1.08
41716--41776	21	2.9	21	81	13	72	57	0	0	42	0.98
41704--41775	22	3.2	22	77	16	76	56	0	0	43	0.99
41704--41787	24	3.7	23	76	22	72	57	0	0	42	0.99
41752--41786	18	1.9	18	88	11	54	60	0	0	40	0.97
42189--42235	22	2.0	24	88	8	71	44	2	4	48	1.34
42632--42665	17	2.0	17	88	0	50	58	0	2	38	1.13
43048--43121	22	3.2	22	75	17	62	37	1	0	60	1.05
43469--43510	22	2.0	21	86	9	59	40	0	2	57	1.12
44716--44761	23	2.0	23	86	0	65	50	4	0	45	1.21
44868--44908	15	2.8	15	85	3	57	26	2	2	68	1.15
44943--44991	21	2.3	21	85	0	62	34	6	0	59	1.22
45206--45256	16	3.2	16	83	5	68	29	1	15	52	1.54
45412--45468	29	1.9	30	82	10	73	38	1	1	57	1.19
45487--45525	18	2.2	17	90	4	60	46	0	0	53	1.00
45499--45534	18	2.0	18	88	0	54	50	0	0	50	1.00
45677--45724	24	2.0	24	88	4	71	56	2	0	41	1.11
46853--46882	16	1.9	15	93	6	51	30	16	0	53	1.44
47380--47427	16	2.9	17	78	6	55	10	18	27	43	1.82
47418--47453	16	2.2	16	90	0	54	13	19	30	36	1.91
47596--47662	28	2.5	26	79	15	73	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47643--47720	18	4.2	18	74	9	68	34	1	1	62	1.11
47996--48055	18	3.4	19	76	17	58	48	0	0	51	1.00
48006--48101	36	2.7	35	80	10	99	42	2	1	54	1.19

Tables:   1

The End!