genome.fa.s653.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold653
Parameters: 2 7 7 80 10 50 1000
Length:  77980

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
967--1015	9	5.1	9	80	20	55	85	0	12	2	0.68
6083--7259	588	2.0	588	98	0	2291	34	13	25	26	1.93
8800--8899	52	1.9	51	81	2	119	33	18	12	37	1.87
12706--12777	29	2.5	29	90	0	117	22	23	19	34	1.96
17664--17793	49	2.6	49	88	2	188	26	12	16	44	1.83
20112--21019	79	11.6	79	82	4	1002	28	24	13	34	1.93
20112--21019	157	5.8	157	80	5	915	28	24	13	34	1.93
34212--34241	15	2.0	15	93	0	51	13	20	16	50	1.78
38324--38348	13	1.9	13	100	0	50	36	16	16	32	1.90
38300--38368	32	2.1	34	89	5	106	31	14	14	39	1.86
38398--38474	21	3.7	21	82	3	111	28	19	11	40	1.87
38419--38492	20	3.7	20	81	3	103	31	20	13	35	1.91
38397--38492	41	2.3	41	100	0	192	30	19	12	37	1.89
44262--44772	61	8.4	60	81	5	562	26	27	18	27	1.98
44262--44771	121	4.2	121	83	5	584	26	27	18	27	1.98
44268--44772	181	2.8	181	82	4	597	26	26	18	27	1.98
44754--44850	41	2.3	41	77	5	106	22	25	15	36	1.94
47945--48687	79	9.4	79	84	4	847	28	23	14	33	1.94
53573--53692	52	2.3	52	97	0	222	29	17	18	35	1.94
53766--53832	33	2.0	33	88	0	98	40	14	11	32	1.83
53788--53812	13	1.9	13	100	0	50	32	16	16	36	1.90
57505--57680	51	3.5	51	78	3	158	27	13	13	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65345--65471	28	4.5	29	83	10	142	24	16	30	28	1.96
65447--65968	36	14.6	36	68	13	193	23	16	26	34	1.95
65720--66010	67	4.3	67	80	6	291	21	15	27	34	1.94
67984--68076	44	2.1	44	95	0	168	31	8	23	36	1.85
69823--69848	13	2.0	13	100	0	52	30	15	15	38	1.88
69887--69962	21	3.7	21	82	3	109	28	18	11	40	1.86
69907--69980	20	3.7	20	81	3	103	31	20	13	35	1.91
69887--69980	41	2.3	41	100	0	188	29	19	12	38	1.89
72431--72469	13	3.0	13	96	0	69	35	15	17	30	1.91
72455--72533	20	3.7	20	78	15	77	44	15	15	25	1.85
72671--72702	8	4.0	8	100	0	64	62	25	0	12	1.30
76998--77041	20	2.2	20	83	4	52	52	4	20	22	1.65

Tables:   1

The End!