genome.fa.s658.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold658
Parameters: 2 7 7 80 10 50 1000
Length:  169098

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--3646	476	7.7	476	92	1	5934	28	20	14	36	1.92
7015--7090	12	6.9	11	75	15	52	39	2	48	9	1.49
7014--7099	24	3.8	24	72	17	85	41	2	45	10	1.51
7005--7123	42	2.8	42	92	0	193	42	2	46	8	1.47
15325--15443	42	2.8	42	90	0	184	9	46	1	42	1.46
15320--15431	21	5.4	19	69	19	73	9	48	1	40	1.47
16181--16227	21	2.2	22	81	11	62	4	19	4	72	1.18
17058--37561	476	43.1	476	92	0	33611	29	20	14	35	1.92
39187--39262	12	6.9	11	75	15	52	39	2	48	9	1.49
39186--39271	24	3.8	24	72	17	85	41	2	45	10	1.51
39177--39295	42	2.8	42	92	0	193	42	2	46	8	1.47
44273--47638	476	7.1	476	93	0	5510	28	20	14	36	1.92
47963--49364	708	2.0	709	97	0	2646	34	22	14	27	1.94
53014--53057	11	3.9	11	87	3	61	4	50	0	45	1.22
53662--53771	42	2.6	42	86	0	157	10	44	1	42	1.50
53686--53771	24	3.8	24	69	17	76	12	41	1	44	1.50
55496--56326	439	1.9	440	90	0	1322	29	21	15	34	1.93
56520--56699	59	3.1	59	98	0	351	32	13	15	38	1.86
56638--58466	476	3.8	476	92	0	2924	29	20	14	35	1.92
63426--63544	42	2.8	42	92	0	193	8	46	2	42	1.47
63459--63534	12	6.9	11	75	15	52	9	48	2	39	1.49
63450--63535	24	3.8	24	72	17	85	10	45	2	41	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63441--63511	18	3.6	18	69	20	52	9	43	2	43	1.52
65954--65993	20	2.0	20	95	0	71	37	30	0	32	1.58
66923--66962	20	2.0	20	95	0	71	37	30	0	32	1.58
65057--96863	475	66.9	475	91	1	49058	29	20	14	36	1.92
65057--124763	951	62.0	951	81	7	60724	29	20	14	35	1.92
101837--101890	15	3.4	15	73	14	54	9	50	1	38	1.45
101853--101914	18	3.6	18	72	12	58	11	43	1	43	1.50
101838--101908	33	2.2	33	92	0	115	11	46	1	40	1.48
101866--101937	12	6.5	11	75	16	53	11	47	1	40	1.48
101868--101947	42	1.9	42	92	0	133	8	46	1	43	1.42
104248--124763	475	43.2	475	91	1	31478	29	20	14	36	1.92
129740--129858	42	2.8	42	90	0	184	8	45	2	43	1.47
129773--129848	12	6.9	11	75	15	52	9	48	2	39	1.49
129764--129849	24	3.8	24	72	17	85	10	45	2	41	1.51
129755--129825	18	3.6	18	69	20	52	9	43	2	43	1.52
130601--130648	24	1.9	26	91	8	82	4	10	4	81	0.97
131483--138134	475	14.0	476	90	0	10305	28	20	14	36	1.92
131483--138119	951	7.0	951	91	0	10461	28	20	14	36	1.92
143105--143223	42	2.8	42	92	0	193	8	46	2	42	1.47
143138--143213	12	6.9	11	75	15	52	9	48	2	39	1.49
143129--143214	24	3.8	24	72	17	85	10	45	2	41	1.51
143120--143190	18	3.6	18	69	20	52	9	43	2	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144218--144247	15	1.9	16	93	6	53	60	6	23	10	1.52
144838--147861	476	6.4	476	91	0	4764	28	20	14	36	1.92
144838--150378	951	5.9	951	90	2	8390	28	20	14	36	1.92
147858--150378	475	5.3	476	90	0	3924	28	20	14	36	1.92
149952--162447	476	26.9	430	73	16	5275	29	20	14	35	1.92
150375--159767	476	19.8	476	91	0	14694	29	20	14	35	1.92
150375--159767	951	9.9	952	92	0	14759	29	20	14	35	1.92
159353--161073	417	4.0	417	73	13	1655	29	20	13	36	1.91
158878--162446	893	4.0	893	95	0	6237	29	20	13	36	1.91
161150--161969	417	2.0	417	95	0	1460	29	20	13	36	1.91
164071--164179	41	2.6	42	91	1	175	41	2	45	10	1.52

Tables:   1

The End!