Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold66
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4623749
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 850 characters in sequence are not A, C, G, or T
File 16 of 26
Found at i:2668288 original size:88 final size:88
Alignment explanation
Indices: 2668135--2668335 Score: 287
Period size: 88 Copynumber: 2.3 Consensus size: 88
2668125 CACTCTTTTT
* * *
2668135 CCTTTTAAGTCCACAACTT-TGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACTCTTTTCCCT
1 CCTTTTAAGTCCACAA-TTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTCCCT
*
2668199 TTTAAGTCCACAACTCTGTGGCAC
65 TTTAAGTCCACAACTCCGTGGCAC
* * * * *
2668223 CCTTTTAAGTCTACAATTCCGTGGCATCCTTTTATGCCCACAACTCCGTGGCATTCTTTTTCCTT
1 CCTTTTAAGTCCACAATTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTCCCTT
*
2668288 TTAAGTCTACAACTCCGTGGCAC
66 TTAAGTCCACAACTCCGTGGCAC
*
2668311 CCTTTTAAGTCCACAACTCCGTGGC
1 CCTTTTAAGTCCACAATTCCGTGGC
2668336 GCCTTATTCC
Statistics
Matches: 100, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
87 2 0.02
88 98 0.98
ACGTcount: A:0.20, C:0.32, G:0.14, T:0.34
Consensus pattern (88 bp):
CCTTTTAAGTCCACAATTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTCCCTT
TTAAGTCCACAACTCCGTGGCAC
Found at i:2668456 original size:95 final size:94
Alignment explanation
Indices: 2668311--2668532 Score: 322
Period size: 95 Copynumber: 2.4 Consensus size: 94
2668301 TCCGTGGCAC
* * *
2668311 CCTTTTAAGTCCACAACTCCGTGGCGCCTTATTCCTTTTAAGTCCACAACTCTGTGCCACCCTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGCCACCCTTT
* * *
2668376 TAAGTCCACAACTCCATGGCA-TCTTTTT
66 TAAGCCCACAACGCCATGACATTCTTTTT
* *
2668404 CTTTTTAAAG-CCTACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCC
1 CCTTTT-AAGTCC-ACAACTCCGTGGCAC-CTTTTTCCTTTTAAGTCCACAACTCCGTGCCACCC
*
2668468 TTTTAAGCCCACAACGCCGTGACATTCTTTTT
63 TTTTAAGCCCACAACGCCATGACATTCTTTTT
2668500 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
2668533 AAGTCCACAA
Statistics
Matches: 114, Mismatches: 10, Indels: 9
0.86 0.08 0.07
Matches are distributed among these distances:
93 7 0.06
94 23 0.20
95 70 0.61
96 14 0.12
ACGTcount: A:0.20, C:0.33, G:0.12, T:0.35
Consensus pattern (94 bp):
CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGCCACCCTTT
TAAGCCCACAACGCCATGACATTCTTTTT
Found at i:2668635 original size:30 final size:29
Alignment explanation
Indices: 2668599--2668694 Score: 124
Period size: 30 Copynumber: 3.3 Consensus size: 29
2668589 TTCTCCTTTT
2668599 AAGCCCACAAGTCAGTGGCACCCTTTTCAA
1 AAGCCCACAAGTCAGTGGCACCC-TTTCAA
*
2668629 AAGCCCACAAGTCAGTGGCAACC-TTCAA
1 AAGCCCACAAGTCAGTGGCACCCTTTCAA
* **
2668657 AAGCACACAAGTTGGT-GCAACCCTTTCAA
1 AAGCCCACAAGTCAGTGGC-ACCCTTTCAA
2668686 AAGCCCACA
1 AAGCCCACA
2668695 CAAGTTGGTG
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 2 0.03
28 21 0.36
29 13 0.22
30 22 0.38
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (29 bp):
AAGCCCACAAGTCAGTGGCACCCTTTCAA
Found at i:2668698 original size:31 final size:30
Alignment explanation
Indices: 2668618--2668704 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 30
2668608 AGTCAGTGGC
**
2668618 ACCCTTTTCAAAAGCC-CACAAGTCAGTGGCA
1 ACCC-TTTCAAAAGCCACACAAGTTGGT-GCA
2668649 A-CC-TTCAAAAG-CACACAAGTTGGTGCA
1 ACCCTTTCAAAAGCCACACAAGTTGGTGCA
2668676 ACCCTTTCAAAAGCCCACACAAGTTGGTG
1 ACCCTTTCAAAAG-CCACACAAGTTGGTG
2668705 ACGTCTTTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
27 5 0.10
28 19 0.39
29 8 0.16
30 2 0.04
31 15 0.31
ACGTcount: A:0.33, C:0.30, G:0.17, T:0.20
Consensus pattern (30 bp):
ACCCTTTCAAAAGCCACACAAGTTGGTGCA
Found at i:2668877 original size:39 final size:39
Alignment explanation
Indices: 2668834--2669155 Score: 257
Period size: 39 Copynumber: 7.6 Consensus size: 39
2668824 AATGTTGCAA
*
2668834 GCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTG
1 GCCTTGAATCAGCACATTGGCATAAGCCCAATATCGTTG
* * *
2668873 GCCTTGAATCAGCACATTGGCACCTTGTCTCTAAGACCAATGTTGTTG
1 GCCTTGAATCAGCACATTGGCA---------TAAGCCCAATATCGTTG
2668921 GCCTTGAATCAGCACATTGGCATAAGCCCAATATCGTTG
1 GCCTTGAATCAGCACATTGGCATAAGCCCAATATCGTTG
* * * *
2668960 GCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTTGTTG
1 GCCTTGAATCAGCACATTGGCA---------TAAGCCCAATATCGTTG
2669008 GCCTTGAATCAGCACATTGGCATAAGCCCAATATCGTTG
1 GCCTTGAATCAGCACATTGGCATAAGCCCAATATCGTTG
* * * * *
2669047 GCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTTGCTG
1 GCCTTGAATCAGCACATTGGCA---------TAAGCCCAATATCGTTG
**
2669095 GCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTG
1 GCCTTGAATCAGCACATTGGCATAAGCCCAATATCGTTG
*
2669134 GCCTTGAATCAGCATATTGGCA
1 GCCTTGAATCAGCACATTGGCA
2669156 CCTTGTCTCT
Statistics
Matches: 230, Mismatches: 26, Indels: 54
0.74 0.08 0.17
Matches are distributed among these distances:
39 126 0.55
48 104 0.45
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (39 bp):
GCCTTGAATCAGCACATTGGCATAAGCCCAATATCGTTG
Found at i:2668932 original size:48 final size:48
Alignment explanation
Indices: 2668856--2669203 Score: 311
Period size: 48 Copynumber: 7.8 Consensus size: 48
2668846 CACATTGGCA
* * *
2668856 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTC
1 TAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTGTCTC
*
2668904 TAAGACCAATGTTGTTGGCCTTGAATCAGCACATTGGCA---------
1 TAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTGTCTC
* * *
2668943 TAAGCCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTGTCTC
1 TAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTGTCTC
*
2668991 TAAGACCAATGTTGTTGGCCTTGAATCAGCACATTGGCA---------
1 TAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTGTCTC
* * *
2669030 TAAGCCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTGTCTC
1 TAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTGTCTC
* *
2669078 TAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCA---------
1 TAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTGTCTC
* * ** *
2669117 TAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGTCTC
1 TAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTGTCTC
* *
2669165 TAAGACCAATGTCGCTAG-CTTGGAATCAGCACATTGGCA
1 TAAGACCAATGTCGTTGGCCTT-GAATCAGCACATTGGCA
2669204 TAAGTCCACA
Statistics
Matches: 241, Mismatches: 31, Indels: 56
0.73 0.09 0.17
Matches are distributed among these distances:
39 104 0.43
47 3 0.01
48 134 0.56
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (48 bp):
TAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTGTCTC
Found at i:2668935 original size:87 final size:87
Alignment explanation
Indices: 2668765--2669207 Score: 708
Period size: 87 Copynumber: 5.0 Consensus size: 87
2668755 TCTTTATCTT
* * * *
2668765 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCATCTCTAAAACCAATGTT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGC-ACCTTG---TCTCTAAGACCAATGTT
**
2668830 GCAAGCCTTGAATCAGCACATTGGCA
62 GCTGGCCTTGAATCAGCACATTGGCA
* *
2668856 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTCTAAGACCAATGTTGTTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTTGCTG
2668921 GCCTTGAATCAGCACATTGGCA
66 GCCTTGAATCAGCACATTGGCA
* *
2668943 TAAGCCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTTGTTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTTGCTG
2669008 GCCTTGAATCAGCACATTGGCA
66 GCCTTGAATCAGCACATTGGCA
*
2669030 TAAGCCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTTGCTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTTGCTG
2669095 GCCTTGAATCAGCACATTGGCA
66 GCCTTGAATCAGCACATTGGCA
* * *
2669117 TAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTA
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTTGCTG
2669182 G-CTTGGAATCAGCACATTGGCA
66 GCCTT-GAATCAGCACATTGGCA
2669204 TAAG
1 TAAG
2669208 TCCACAACTT
Statistics
Matches: 336, Mismatches: 15, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
86 3 0.01
87 293 0.87
90 4 0.01
91 36 0.11
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (87 bp):
TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTTGCTG
GCCTTGAATCAGCACATTGGCA
Found at i:2669247 original size:34 final size:33
Alignment explanation
Indices: 2669204--2669724 Score: 408
Period size: 27 Copynumber: 16.9 Consensus size: 33
2669194 CACATTGGCA
*
2669204 TAAGTCCACAACTTCGTGGCACTCTTTTTCCTTT
1 TAAGTCCACAACTCCGTGGCAC-CTTTTTCCTTT
*
2669238 TAAGTCCACAACTTCGTGGCA-C-----CCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
* *
2669265 TAAGTCCACAACTCTGTGGCACTCTTTTCCCTTT
1 TAAGTCCACAACTCCGTGGCAC-CTTTTTCCTTT
2669299 TAAGTCCACAACTCCGTGGCA-C-----CCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
* *
2669326 TAAGTCTACAATTCCGTGGCA------TCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
* * *
2669353 TATGCCCACAACTCCGTGGCATTCTTTTTCCTTT
1 TAAGTCCACAACTCCGTGGCA-CCTTTTTCCTTT
*
2669387 TAAGTCTACAACTCCGTGGCA-C-----CCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
* *
2669414 TAAGTCCACAACTCCGTGGCGCCTTGTTCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
* *
2669447 TAAGTCCACAACTCTGTGCCA-C-----CCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
* *
2669474 TAAGTCCACAACTCCATGGCACCTTTTTCTTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
2669507 TAAAG-CCTACAACTCCGTGGCACTCTTTTTCCTTT
1 T-AAGTCC-ACAACTCCGTGGCAC-CTTTTTCCTTT
2669542 TAAGTCCACAACTCCGTGGCA-C-----CCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
* * * *
2669569 TAAGCCCACAACGCCGTGACATTCTTTTTCCTTT
1 TAAGTCCACAACTCCGTGGCA-CCTTTTTCCTTT
2669603 TAAGTCCACAACTCCGTGGCACC----T--TTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
* *
2669630 TAAGTCCACAACTCCGTGGCGCCTTGTTCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
* * * *
2669663 TAAGTCCAAAACTTCGTGGCATCTTTCTCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
* * * *
2669696 TAAGCCCACAAGTCAGTGGCACCCTTTTC
1 TAAGTCCACAACTCCGTGGCACCTTTTTC
2669725 AAAAGCCCAC
Statistics
Matches: 398, Mismatches: 45, Indels: 89
0.75 0.08 0.17
Matches are distributed among these distances:
27 165 0.41
28 2 0.01
29 3 0.01
31 1 0.00
32 5 0.01
33 82 0.21
34 127 0.32
35 13 0.03
ACGTcount: A:0.20, C:0.32, G:0.14, T:0.34
Consensus pattern (33 bp):
TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
Found at i:2669299 original size:61 final size:60
Alignment explanation
Indices: 2669204--2669683 Score: 379
Period size: 61 Copynumber: 7.9 Consensus size: 60
2669194 CACATTGGCA
* * *
2669204 TAAGTCCACAACTTCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTTCGTGGCACCCTTT
1 TAAGTCCACAACTCCGTGGCAC-CTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCCTTT
*
2669265 TAAGTCCACAACTCTGTGGCACTCTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCCTTT
1 TAAGTCCACAACTCCGTGGCAC-CTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCCTTT
* * * *
2669326 TAAGTCTACAATTCCGTGGCA-----T-CCTTTTATGCCCACAACTCCGTGGCATTCTTTTTCCT
1 TAAGTCCACAACTCCGTGGCACCTTTTCCCTTTTAAGTCCACAACTCCGTGGCA--C-----CCT
2669385 TT
59 TT
* *
2669387 TAAGTCTACAACTCCGTGGCA------CCCTTTTAAGTCCACAACTCCGTGGCGCCTTGTTCCTT
1 TAAGTCCACAACTCCGTGGCACCTTTTCCCTTTTAAGTCCACAACTCCGTGGC-AC-----CCTT
2669446 T
60 T
* * *
2669447 TAAGTCCACAACTCTGT-G--CC---ACCCTTTTAAGTCCACAACTCCATGGCACCTTTTTCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTCCCTTTTAAGTCCACAACTCCGTGGCACC-----C-TT
2669506 T
60 T
*
2669507 TAAAG-CCTACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTT
1 T-AAGTCC-ACAACTCCGTGGCAC-CTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCCTTT
* * * * * *
2669569 TAAGCCCACAACGCCGTGACATTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTT
1 TAAGTCCACAACTCCGTGGCA-CCTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCCTTT
* * *
2669630 TAAGTCCACAACTCCGTGGCGCCTTGTT-CCTTTTAAGTCCAAAACTTCGTGGCA
1 TAAGTCCACAACTCCGTGGCACCTT-TTCCCTTTTAAGTCCACAACTCCGTGGCA
2669684 TCTTTCTCCT
Statistics
Matches: 356, Mismatches: 33, Indels: 61
0.79 0.07 0.14
Matches are distributed among these distances:
54 25 0.07
55 1 0.00
56 1 0.00
59 3 0.01
60 83 0.23
61 206 0.58
62 7 0.02
63 1 0.00
64 1 0.00
65 1 0.00
68 27 0.08
ACGTcount: A:0.20, C:0.32, G:0.14, T:0.34
Consensus pattern (60 bp):
TAAGTCCACAACTCCGTGGCACCTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCCTTT
Found at i:2669386 original size:88 final size:88
Alignment explanation
Indices: 2669233--2669433 Score: 305
Period size: 88 Copynumber: 2.3 Consensus size: 88
2669223 CACTCTTTTT
* *
2669233 CCTTTTAAGTCCACAACTT-CGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACTCTTTTCCCT
1 CCTTTTAAGTCCACAA-TTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTCCCT
2669297 TTTAAGTCCACAACTCCGTGGCAC
65 TTTAAGTCCACAACTCCGTGGCAC
* * * * *
2669321 CCTTTTAAGTCTACAATTCCGTGGCATCCTTTTATGCCCACAACTCCGTGGCATTCTTTTTCCTT
1 CCTTTTAAGTCCACAATTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTCCCTT
*
2669386 TTAAGTCTACAACTCCGTGGCAC
66 TTAAGTCCACAACTCCGTGGCAC
*
2669409 CCTTTTAAGTCCACAACTCCGTGGC
1 CCTTTTAAGTCCACAATTCCGTGGC
2669434 GCCTTGTTCC
Statistics
Matches: 102, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
87 2 0.02
88 100 0.98
ACGTcount: A:0.20, C:0.33, G:0.14, T:0.33
Consensus pattern (88 bp):
CCTTTTAAGTCCACAATTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTCCCTT
TTAAGTCCACAACTCCGTGGCAC
Found at i:2669494 original size:121 final size:115
Alignment explanation
Indices: 2669293--2669586 Score: 329
Period size: 121 Copynumber: 2.4 Consensus size: 115
2669283 GCACTCTTTT
* * * * *
2669293 CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCTACAATTCCGTGGCATCCTTTTATGC
1 CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGCCACCCTTTTAAGC
* * *
2669358 CCACAACTCCGTGGCATTCTTTTTCCTTTT-AAGTCTACAACTCCGTGGCA
66 CCACAACTCCATGGCA-CCTTTTTCCTTTTAAAGCCTACAACTCCGTGGCA
* *
2669408 CCCTTTTAAGTCCACAACTCCGTGGCGCCTTGTTCCTTTTAAGTCCACAACTCTGTGCCACCCTT
1 CCCTTTTAAGTCCACAACTCCGTGGC-AC-----CCTTTTAAGTCCACAACTCCGTGCCACCCTT
* *
2669473 TTAAGTCCACAACTCCATGGCACCTTTTTCTTTTTAAAGCCTACAACTCCGTGGCA
60 TTAAGCCCACAACTCCATGGCACCTTTTTCCTTTTAAAGCCTACAACTCCGTGGCA
* *
2669529 CTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACGCCGTG
1 --C-----CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTG
2669587 ACATTCTTTT
Statistics
Matches: 149, Mismatches: 16, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
115 26 0.17
116 1 0.01
120 11 0.07
121 64 0.43
122 20 0.13
123 1 0.01
127 1 0.01
128 25 0.17
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.33
Consensus pattern (115 bp):
CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGCCACCCTTTTAAGC
CCACAACTCCATGGCACCTTTTTCCTTTTAAAGCCTACAACTCCGTGGCA
Found at i:2669554 original size:95 final size:94
Alignment explanation
Indices: 2669409--2669630 Score: 313
Period size: 95 Copynumber: 2.4 Consensus size: 94
2669399 TCCGTGGCAC
* * *
2669409 CCTTTTAAGTCCACAACTCCGTGGCGCCTTGTTCCTTTTAAGTCCACAACTCTGTGCCACCCTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGCCACCCTTT
* * *
2669474 TAAGTCCACAACTCCATGGCA-CCTTTTT
66 TAAGCCCACAACGCCATGACATCCTTTTT
* *
2669502 CTTTTTAAAG-CCTACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCC
1 CCTTTT-AAGTCC-ACAACTCCGTGGCAC-CTTTTTCCTTTTAAGTCCACAACTCCGTGCCACCC
* *
2669566 TTTTAAGCCCACAACGCCGTGACATTCTTTTT
63 TTTTAAGCCCACAACGCCATGACATCCTTTTT
2669598 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
2669631 AAGTCCACAA
Statistics
Matches: 113, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
93 7 0.06
94 23 0.20
95 70 0.62
96 13 0.12
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.34
Consensus pattern (94 bp):
CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGCCACCCTTT
TAAGCCCACAACGCCATGACATCCTTTTT
Found at i:2669732 original size:30 final size:29
Alignment explanation
Indices: 2669697--2669792 Score: 124
Period size: 30 Copynumber: 3.3 Consensus size: 29
2669687 TTCTCCTTTT
2669697 AAGCCCACAAGTCAGTGGCACCCTTTTCAA
1 AAGCCCACAAGTCAGTGGCACCC-TTTCAA
*
2669727 AAGCCCACAAGTCAGTGGCAACC-TTCAA
1 AAGCCCACAAGTCAGTGGCACCCTTTCAA
* **
2669755 AAGCACACAAGTTGGT-GCAACCCTTTCAA
1 AAGCCCACAAGTCAGTGGC-ACCCTTTCAA
2669784 AAGCCCACA
1 AAGCCCACA
2669793 CAAGTTGGTG
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 2 0.03
28 21 0.36
29 13 0.22
30 22 0.38
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (29 bp):
AAGCCCACAAGTCAGTGGCACCCTTTCAA
Found at i:2669796 original size:31 final size:30
Alignment explanation
Indices: 2669716--2669802 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 30
2669706 AGTCAGTGGC
**
2669716 ACCCTTTTCAAAAGCC-CACAAGTCAGTGGCA
1 ACCC-TTTCAAAAGCCACACAAGTTGGT-GCA
2669747 A-CC-TTCAAAAG-CACACAAGTTGGTGCA
1 ACCCTTTCAAAAGCCACACAAGTTGGTGCA
2669774 ACCCTTTCAAAAGCCCACACAAGTTGGTG
1 ACCCTTTCAAAAG-CCACACAAGTTGGTG
2669803 ACGTCTTCTT
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
27 5 0.10
28 19 0.39
29 8 0.16
30 2 0.04
31 15 0.31
ACGTcount: A:0.33, C:0.30, G:0.17, T:0.20
Consensus pattern (30 bp):
ACCCTTTCAAAAGCCACACAAGTTGGTGCA
Found at i:2669870 original size:49 final size:48
Alignment explanation
Indices: 2669809--2670875 Score: 672
Period size: 49 Copynumber: 22.8 Consensus size: 48
2669799 GGTGACGTCT
* * *
2669809 TCTTCTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGTATCTTCA
1 TCTT-TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTTCA
* * * *
2669859 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCA
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGC-AC--T-TCA
* * * **
2669911 TCTCTAAAACCAATGTTGCAAGCCTTGAATCAGCACATTGG-----CA
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTCA
* * * *
2669954 ----TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-G
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTTCA
* *
2669998 TCTCTAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGG-----CA
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTCA
* * * *
2670041 ----TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-G
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTTCA
* *
2670085 TCTCTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGG-----CA
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTCA
* * * * *
2670128 ----TAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTT-G
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTTCA
* * *
2670172 TCTCTAAGACCAATGTCACTAG-CTTGGAATCAGCACATTGG-----CA
1 TCTTTAAGACCAATGTCGCTGGCCTT-GAATCAGCACATTGGCACTTCA
* * * *
2670215 ----TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCTTTGTCA
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC--T-TCA
* *
2670262 TCTCTAAGGCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA----A
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTCA
* * * *
2670306 -----AAGCCCAATATCGCTGGCCTTGAATCAGTATATTGGCACATT-A
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC-TTCA
*
2670349 TCTTTAAGACCAATGTCGCTGGCCTTGAATAAGCACATTGG-----CA
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTCA
* * * * **
2670392 -C---AAGCCCAATATCGCTGGCCTTGAATCAACATATTGATACCTTCGTCA
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-T--TCA
* * *
2670440 TCTTTAAAACAAATGTCGCTGGCCTTGAATCAGCACATTGGCACCGTCA
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTTCA
* *
2670489 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGACATCTTCA
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTTCA
* * * * *
2670538 TTTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGACGC-CTTTGTCA
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTG--GCAC--T-TCA
*
2670590 TTTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCA
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTTCA
* ** * * *
2670639 TCTTTAAGTCCGGTATCGCTGGCCTTGAATCAGCATATTGGCACCGTCA
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTTCA
2670688 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCA
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTTCA
* * * * * *
2670737 TGTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCATCTTTA
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTTCA
* * * * ** *
2670786 ACATTCCTAAGCCCAATGTCGTTAGCCTTGTCTCAGCACATTGGCA-TTCT
1 TC-TT--TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTCA
* * * *
2670836 TCTTCAAGTCTAATGTCGCTGGCCATGAATCAGCACATTG
1 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTG
2670876 TCATTCTTCG
Statistics
Matches: 798, Mismatches: 135, Indels: 171
0.72 0.12 0.15
Matches are distributed among these distances:
39 187 0.23
40 3 0.00
42 1 0.00
43 4 0.01
44 1 0.00
47 33 0.04
48 128 0.16
49 250 0.31
50 12 0.02
51 38 0.05
52 141 0.18
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (48 bp):
TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTCA
Found at i:2669975 original size:39 final size:39
Alignment explanation
Indices: 2669932--2670252 Score: 239
Period size: 39 Copynumber: 7.5 Consensus size: 39
2669922 AATGTTGCAA
*
2669932 GCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTG
1 GCCTTGAATCAGCACATTGGCATAAGACCAATATCGCTG
* * *
2669971 GCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGTTG
1 GCCTTGAATCAGCACATTGGCA---------TAAGACCAATATCGCTG
*
2670019 GCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTG
1 GCCTTGAATCAGCACATTGGCATAAGACCAATATCGCTG
* * *
2670058 GCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTTGCTG
1 GCCTTGAATCAGCACATTGGCA---------TAAGACCAATATCGCTG
* *
2670106 GCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTG
1 GCCTTGAATCAGCACATTGGCATAAGACCAATATCGCTG
* * * *
2670145 GCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCACTA
1 GCCTTGAATCAGCACATTGGCA---------TAAGACCAATATCGCTG
*
2670193 G-CTTGGAATCAGCACATTGGCATAAGTCCAATATCGCTG
1 GCCTT-GAATCAGCACATTGGCATAAGACCAATATCGCTG
*
2670232 GCCTTGAATCAGCATATTGGC
1 GCCTTGAATCAGCACATTGGC
2670253 GCTTTGTCAT
Statistics
Matches: 226, Mismatches: 27, Indels: 58
0.73 0.09 0.19
Matches are distributed among these distances:
39 119 0.53
40 3 0.01
47 3 0.01
48 101 0.45
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.27
Consensus pattern (39 bp):
GCCTTGAATCAGCACATTGGCATAAGACCAATATCGCTG
Found at i:2670036 original size:87 final size:87
Alignment explanation
Indices: 2669863--2670482 Score: 882
Period size: 87 Copynumber: 7.0 Consensus size: 87
2669853 TCTTCATCTT
* * * *
2669863 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTCTAAAACCAATGTT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTG---TCTCTAAGACCAATGTC
**
2669928 GCAAGCCTTGAATCAGCACATTGGCA
62 GCTGGCCTTGAATCAGCACATTGGCA
*
2669954 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGTTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTG
2670019 GCCTTGAATCAGCACATTGGCA
66 GCCTTGAATCAGCACATTGGCA
*
2670041 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTTGCTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTG
2670106 GCCTTGAATCAGCACATTGGCA
66 GCCTTGAATCAGCACATTGGCA
* * *
2670128 TAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCACTA
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTG
2670193 G-CTTGGAATCAGCACATTGGCA
66 GCCTT-GAATCAGCACATTGGCA
* * * *
2670215 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCTTTGTCATCTCTAAGGCCAATGTCG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTG---TCTCTAAGACCAATGTCG
2670280 CTGGCCTTGAATCAGCACATTGGCA
63 CTGGCCTTGAATCAGCACATTGGCA
* * * * *
2670305 AAAGCCCAATATCGCTGGCCTTGAATCAGTATATTGGCACATTATCTTTAAGACCAATGTCGCTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTG
*
2670370 GCCTTGAATAAGCACATTGGCA
66 GCCTTGAATCAGCACATTGGCA
* * ** * *
2670392 CAAGCCCAATATCGCTGGCCTTGAATCAACATATTGATACCTTCGTCATCTTTAAAACAAATGTC
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTC-TC--TAAGACCAATGTC
2670457 GCTGGCCTTGAATCAGCACATTGGCA
62 GCTGGCCTTGAATCAGCACATTGGCA
2670483 CCGTCATCTT
Statistics
Matches: 480, Mismatches: 40, Indels: 18
0.89 0.07 0.03
Matches are distributed among these distances:
86 3 0.01
87 319 0.66
88 2 0.00
89 1 0.00
90 77 0.16
91 78 0.16
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (87 bp):
TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTG
GCCTTGAATCAGCACATTGGCA
Found at i:2670325 original size:39 final size:39
Alignment explanation
Indices: 2670271--2670419 Score: 154
Period size: 39 Copynumber: 3.6 Consensus size: 39
2670261 ATCTCTAAGG
*
2670271 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCAAAAGC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCAAAAGC
* * *
2670310 CCAATATCGCTGGCCTTGAATCAGTATATTGGCACATTATCTTTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCACATTGG--CA--A-----AAGC
* * *
2670358 CCAATGTCGCTGGCCTTGAATAAGCACATTGGCACAAGC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCAAAAGC
2670397 CCAATATCGCTGGCCTTGAATCA
1 CCAATATCGCTGGCCTTGAATCA
2670420 ACATATTGAT
Statistics
Matches: 89, Mismatches: 12, Indels: 18
0.75 0.10 0.15
Matches are distributed among these distances:
39 53 0.60
41 2 0.02
43 1 0.01
46 2 0.02
48 31 0.35
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (39 bp):
CCAATATCGCTGGCCTTGAATCAGCACATTGGCAAAAGC
Found at i:2670804 original size:199 final size:200
Alignment explanation
Indices: 2670455--2670875 Score: 607
Period size: 199 Copynumber: 2.1 Consensus size: 200
2670445 AAAACAAATG
*
2670455 TCGCTGGCCTTGAATCAGCACATTGGCACCGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATC
1 TCGCTGGCCTTGAATCAGCACATTGGCACCGTCATCTTTAAGACCAATGTCGCTGGCCTTGAATC
* * *
2670520 AGCACATTGACATCTTCATTTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGACGCCTT
66 AGCACATTGACACCTTCATGTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGACACCTT
** ** *
2670585 TGTCATTTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-TCTTCATCTTTAAGTC
131 TAACATTCCTAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCATTCTTCATCTTTAAGTC
2670649 CGGTA
196 CGGTA
*
2670654 TCGCTGGCCTTGAATCAGCATATTGGCACCGTCATCTTTAAGACCAATGTCGCTGGCCTTGAATC
1 TCGCTGGCCTTGAATCAGCACATTGGCACCGTCATCTTTAAGACCAATGTCGCTGGCCTTGAATC
* * *
2670719 AGCACATTGGCACCTTCATGTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCATCTT
66 AGCACATTGACACCTTCATGTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGACACCTT
* * ** *
2670784 TAACATTCCTAAGCCCAATGTCGTTAGCCTTGTCTCAGCACATTGGCATTC-T--TCTTCAAGTC
131 TAACATTCCTAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCATTCTTCATCTTTAAGTC
*** *
2670846 TAATG
196 CGGTA
*
2670851 TCGCTGGCCATGAATCAGCACATTG
1 TCGCTGGCCTTGAATCAGCACATTG
2670876 TCATTCTTCG
Statistics
Matches: 197, Mismatches: 24, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
197 33 0.17
199 162 0.82
200 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (200 bp):
TCGCTGGCCTTGAATCAGCACATTGGCACCGTCATCTTTAAGACCAATGTCGCTGGCCTTGAATC
AGCACATTGACACCTTCATGTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGACACCTT
TAACATTCCTAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCATTCTTCATCTTTAAGTC
CGGTA
Found at i:2670814 original size:150 final size:148
Alignment explanation
Indices: 2670397--2670875 Score: 523
Period size: 150 Copynumber: 3.2 Consensus size: 148
2670387 TGGCACAAGC
* * * * * * * *
2670397 CCAATATCGCTGGCCTTGAATCAACATATTGATACCTTCGTCATCTTTAAAACAAATGTCGCTGG
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGACACCTT-GTCATGTTTAAGACCAATATCGCTGG
* *
2670462 CCTTGAATCAGCACATTGGCACCGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
65 CCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
* *
2670527 TGACATCTTCATTTTTAAGT
130 TGGCA-CTTCATCTTTAAGT
* * * * * *
2670547 CCAATATCGTTGGCCTTGAATCAGCATATTGACGCCTTTGTCATTTTTAAGACCAATGTCGCTGG
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGACACC-TTGTCATGTTTAAGACCAATATCGCTGG
** * *
2670612 CCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCGGTATCGCTGGCCTTGAATCAGCATAT
65 CCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
* *
2670677 TGGCACCGTCATCTTTAAGA
130 TGGCA-CTTCATCTTTAAGT
* * *
2670697 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-T-TCATGTTTAAGTCCAATATCGTTGGC
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGACACCTTGTCATGTTTAAGACCAATATCGCTGGC
* * * * * * **
2670760 CTTGAATCAGCATATTGGCATCTTTAACATTCCTAAGCCCAATGTCGTTAGCCTTGTCTCAGCAC
66 CTTGAATCAGCACATTGGCATCTTCATC-TT--TAAGTCCAATGTCGCTGGCCTTGAATCAGCAC
* *
2670825 ATTGGCA-TTCTTCTTCAAGT
128 ATTGGCACTTCATCTTTAAGT
* *
2670845 CTAATGTCGCTGGCCATGAATCAGCACATTG
1 CCAATGTCGCTGGCCTTGAATCAGCACATTG
2670876 TCATTCTTCG
Statistics
Matches: 280, Mismatches: 45, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
147 47 0.17
148 41 0.15
150 190 0.68
151 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.32
Consensus pattern (148 bp):
CCAATGTCGCTGGCCTTGAATCAGCACATTGACACCTTGTCATGTTTAAGACCAATATCGCTGGC
CTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT
GGCACTTCATCTTTAAGT
Found at i:2671672 original size:19 final size:19
Alignment explanation
Indices: 2671650--2671699 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
2671640 AAATAATAAC
*
2671650 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAATGT
2671669 TGTATCGATACATAAATGT
1 TGTATCGATACATAAATGT
2671688 TGTATCGATACA
1 TGTATCGATACA
2671700 ATGTATCGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (19 bp):
TGTATCGATACATAAATGT
Found at i:2672991 original size:221 final size:221
Alignment explanation
Indices: 2672608--2673044 Score: 847
Period size: 221 Copynumber: 2.0 Consensus size: 221
2672598 ACGAGATAAA
*
2672608 TTACGATCATTACGTTTTCTTTCTTCTTCCTTGTTTGACCTAGGTAATTCATTTGCATAAAATAT
1 TTACGATCATTACGTTTTCTTTCTTCTTCCTTGTTTGACCCAGGTAATTCATTTGCATAAAATAT
2672673 CATATGCTTCTATTTCCTTGTCAGCATATTTCCTCCTTATTACTCTAGATGGCACTCATATTTTA
66 CATATGCTTCTATTTCCTTGTCAGCATATTTCCTCCTTATTACTCTAGATGGCACTCATATTTTA
*
2672738 AAACTGATTTACAAAAATCATAAGGTAATATTCCGTGTCGGTATCTCTCCAGTGATTGACACGGA
131 AAACTGATTTACAAAAATCATAAGGCAATATTCCGTGTCGGTATCTCTCCAGTGATTGACACGGA
2672803 ATATCAAGTTTTCAAAGTAAACTGAT
196 ATATCAAGTTTTCAAAGTAAACTGAT
2672829 TTACGATCATTACGTTTTCTTTCTTCTTCCTTGTTTGACCCAGGTAATTCATTTGCATAAAATAT
1 TTACGATCATTACGTTTTCTTTCTTCTTCCTTGTTTGACCCAGGTAATTCATTTGCATAAAATAT
*
2672894 CATATGCTTCTATTTCTTTGTCAGCATATTTCCTCCTTATTACTCTAGATGGCACTCATATTTTA
66 CATATGCTTCTATTTCCTTGTCAGCATATTTCCTCCTTATTACTCTAGATGGCACTCATATTTTA
2672959 AAACTGATTTACAAAAATCATAAGGCAATATTCCGTGTCGGTATCTCTCCAGTGATTGACACGGA
131 AAACTGATTTACAAAAATCATAAGGCAATATTCCGTGTCGGTATCTCTCCAGTGATTGACACGGA
2673024 ATATCAAGTTTTCAAAGTAAA
196 ATATCAAGTTTTCAAAGTAAA
2673045 ATCCAGAGAG
Statistics
Matches: 213, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
221 213 1.00
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.40
Consensus pattern (221 bp):
TTACGATCATTACGTTTTCTTTCTTCTTCCTTGTTTGACCCAGGTAATTCATTTGCATAAAATAT
CATATGCTTCTATTTCCTTGTCAGCATATTTCCTCCTTATTACTCTAGATGGCACTCATATTTTA
AAACTGATTTACAAAAATCATAAGGCAATATTCCGTGTCGGTATCTCTCCAGTGATTGACACGGA
ATATCAAGTTTTCAAAGTAAACTGAT
Found at i:2676059 original size:24 final size:24
Alignment explanation
Indices: 2676031--2676097 Score: 107
Period size: 24 Copynumber: 2.8 Consensus size: 24
2676021 AAAAATTAGC
*
2676031 CACCAATTTTAACAAACAACAAGT
1 CACCATTTTTAACAAACAACAAGT
*
2676055 CACCATTTTTGACAAACAACAAGT
1 CACCATTTTTAACAAACAACAAGT
*
2676079 CACCATTTTTTACAAACAA
1 CACCATTTTTAACAAACAA
2676098 AAAGAACCAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.45, C:0.25, G:0.04, T:0.25
Consensus pattern (24 bp):
CACCATTTTTAACAAACAACAAGT
Found at i:2676154 original size:28 final size:26
Alignment explanation
Indices: 2676031--2676155 Score: 105
Period size: 24 Copynumber: 4.9 Consensus size: 26
2676021 AAAAATTAGC
* * *
2676031 CACCAATTTTAACAAACAACAAG--T
1 CACCATTTTTGACAAACAAAAAGAAT
*
2676055 CACCATTTTTGACAAACAACAAG--T
1 CACCATTTTTGACAAACAAAAAGAAT
* *
2676079 CACCATTTTTTACAAACAAAAAGAAC
1 CACCATTTTTGACAAACAAAAAGAAT
* * *
2676105 CACCATTTTTTATAAATAAAAAAGGAAT
1 CACCATTTTTGACAAA-CAAAAA-GAAT
* *
2676133 CACTATTTTTGACAAACTAAAAG
1 CACCATTTTTGACAAACAAAAAG
2676156 GGTGGCTTTT
Statistics
Matches: 84, Mismatches: 13, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
24 43 0.51
26 16 0.19
27 9 0.11
28 16 0.19
ACGTcount: A:0.47, C:0.20, G:0.06, T:0.26
Consensus pattern (26 bp):
CACCATTTTTGACAAACAAAAAGAAT
Found at i:2679723 original size:32 final size:32
Alignment explanation
Indices: 2679682--2679746 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
2679672 CAGGATTGGA
2679682 TTGTACCACATGCCAGTCGATTAATAGTCTTT
1 TTGTACCACATGCCAGTCGATTAATAGTCTTT
2679714 TTGTACCACATGCCAGTCGATTAATAGTCTTT
1 TTGTACCACATGCCAGTCGATTAATAGTCTTT
2679746 T
1 T
2679747 AATCTTTCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (32 bp):
TTGTACCACATGCCAGTCGATTAATAGTCTTT
Found at i:2680329 original size:24 final size:24
Alignment explanation
Indices: 2680301--2680354 Score: 92
Period size: 24 Copynumber: 2.2 Consensus size: 24
2680291 AATAAAAATT
2680301 AGCCACTAATTTT-AACAAACAACA
1 AGCCACTAATTTTGAA-AAACAACA
2680325 AGCCACTAATTTTGAAAAACAACA
1 AGCCACTAATTTTGAAAAACAACA
2680349 AGCCAC
1 AGCCAC
2680355 CGTTTTTTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 27 0.93
25 2 0.07
ACGTcount: A:0.48, C:0.26, G:0.07, T:0.19
Consensus pattern (24 bp):
AGCCACTAATTTTGAAAAACAACA
Found at i:2680368 original size:24 final size:25
Alignment explanation
Indices: 2680341--2680399 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 25
2680331 TAATTTTGAA
* * *
2680341 AAACAACAAG-CCACCGTTTTTTGT
1 AAACAAAAAGACCACCATTTTTTAT
2680365 AAACAAAAAGAACCACCATTTTTTAT
1 AAACAAAAAG-ACCACCATTTTTTAT
2680391 AAACAAAAA
1 AAACAAAAA
2680400 AAAATCACCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 9 0.30
26 21 0.70
ACGTcount: A:0.49, C:0.20, G:0.07, T:0.24
Consensus pattern (25 bp):
AAACAAAAAGACCACCATTTTTTAT
Found at i:2680387 original size:26 final size:27
Alignment explanation
Indices: 2680351--2680414 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
2680341 AAACAACAAG
* * *
2680351 CCACCGTTTTTTGTAAAC-AAAAAGAA
1 CCACCATTTTTTATAAACAAAAAAAAA
2680377 CCACCATTTTTTATAAACAAAAAAAAA
1 CCACCATTTTTTATAAACAAAAAAAAA
*
2680404 TCACCATTTTT
1 CCACCATTTTT
2680415 GACAAACTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
26 16 0.48
27 17 0.52
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.31
Consensus pattern (27 bp):
CCACCATTTTTTATAAACAAAAAAAAA
Found at i:2680399 original size:27 final size:26
Alignment explanation
Indices: 2680351--2680428 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 26
2680341 AAACAACAAG
* *
2680351 CCACCGTTTTTTGTAAACAAAAAGAA
1 CCACCATTTTTTATAAACAAAAAGAA
*
2680377 CCACCATTTTTTATAAACAAAAAAAAA
1 CCACCATTTTTTATAAAC-AAAAAGAA
* * *
2680404 TCACCATTTTTGACAAACTAAAAAG
1 CCACCATTTTTTATAAAC-AAAAAG
2680429 GTGGTTTTTG
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 16 0.37
27 27 0.63
ACGTcount: A:0.47, C:0.19, G:0.06, T:0.27
Consensus pattern (26 bp):
CCACCATTTTTTATAAACAAAAAGAA
Found at i:2690473 original size:14 final size:15
Alignment explanation
Indices: 2690450--2690496 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
2690440 ATTAACCAAG
2690450 TAAAGTTAATTAATTA
1 TAAA-TTAATTAATTA
*
2690466 TAAA-TAATTTATTA
1 TAAATTAATTAATTA
* *
2690480 GAAATTGATTAATTA
1 TAAATTAATTAATTA
2690495 TA
1 TA
2690497 TAAAAAATAT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
14 12 0.48
15 9 0.36
16 4 0.16
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (15 bp):
TAAATTAATTAATTA
Found at i:2690521 original size:17 final size:17
Alignment explanation
Indices: 2690489--2690539 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
2690479 AGAAATTGAT
* *
2690489 TAATTATATAAAAAATA
1 TAATTATGTAATAAATA
2690506 TAATTATGTAATAAATGA
1 TAATTATGTAATAAAT-A
* *
2690524 AAATCATGT-ATAAATA
1 TAATTATGTAATAAATA
2690540 ACAAAAGTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
16 1 0.03
17 20 0.69
18 8 0.28
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (17 bp):
TAATTATGTAATAAATA
Found at i:2692987 original size:139 final size:133
Alignment explanation
Indices: 2692748--2693011 Score: 323
Period size: 139 Copynumber: 1.9 Consensus size: 133
2692738 TAATTAGTAG
* * * * * * * *
2692748 AAACTTAGATTAAAAATAGTTAATATTAATAAAAATATTAATTAAGGAAATTTTAGATTTATAAG
1 AAACTTAGATTAAAAATAATTAATATAAAAAAAAATATTAATTAAGAAAAGTATACATTAATAAG
* * * *
2692813 CTTCAAAATTATTCAGAAAATAATAAATAAAGATTAGTTAATATTTTAATCTAATAAAAATAATA
66 CTTCAAAATTAATCAAAAAATAATAAATAAAGATTAATCAATATTTTAATCTAATAAAAATAATA
2692878 ATT
131 ATT
2692881 AAACTTAGATTAAAAATTAATTAATAATAAAAAATAAATATCTATATTAAGAAAAGTATACATTA
1 AAACTTAGATTAAAAA-TAATTAAT-ATAAAAAA-AAATAT-TA-ATTAAGAAAAGTATACATTA
* * *
2692946 ATAAAGACTTCAAAGTTAAT-AAAAAATAATAAATAAAGATTAATCAATATTTTGATTTAATAAA
61 AT-AAG-CTTCAAAATTAATCAAAAAATAATAAATAAAGATTAATCAATATTTTAATCTAATAAA
2693010 AA
124 AA
2693012 ATCATAAATA
Statistics
Matches: 109, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
133 16 0.15
134 7 0.06
135 6 0.06
136 6 0.06
137 2 0.02
138 17 0.16
139 44 0.40
140 11 0.10
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (133 bp):
AAACTTAGATTAAAAATAATTAATATAAAAAAAAATATTAATTAAGAAAAGTATACATTAATAAG
CTTCAAAATTAATCAAAAAATAATAAATAAAGATTAATCAATATTTTAATCTAATAAAAATAATA
ATT
Found at i:2693057 original size:21 final size:21
Alignment explanation
Indices: 2693018--2693057 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
2693008 AAAAATCATA
*
2693018 AATAAAAAATTAGTTAATATT
1 AATAAAAAATTAGTCAATATT
2693039 AATAAAAAATATA-TCAATA
1 AATAAAAAAT-TAGTCAATA
2693058 AAGAAGAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (21 bp):
AATAAAAAATTAGTCAATATT
Found at i:2693969 original size:20 final size:19
Alignment explanation
Indices: 2693923--2693999 Score: 64
Period size: 20 Copynumber: 3.9 Consensus size: 19
2693913 TCATACCCTG
*
2693923 ATGTATCAATACATTTTTCA
1 ATGTATCAATACA-TTATCA
* * *
2693943 ATATATCGATACATGTATGA
1 ATGTATCAATACAT-TATCA
* *
2693963 ATGTATCAATATATTCAACA
1 ATGTATCAATACATT-ATCA
*
2693983 ATGTATCGATACATTAT
1 ATGTATCAATACATTAT
2694000 GTCTTTTTAC
Statistics
Matches: 43, Mismatches: 12, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
19 3 0.07
20 40 0.93
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (19 bp):
ATGTATCAATACATTATCA
Found at i:2693990 original size:40 final size:39
Alignment explanation
Indices: 2693923--2694000 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
2693913 TCATACCCTG
***
2693923 ATGTATCAATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCAATACATTCAACAATATATCGATACAT-TATGA
* *
2693963 ATGTATCAATATATTCAACAATGTATCGATACATTATG
1 ATGTATCAATACATTCAACAATATATCGATACATTATG
2694001 TCTTTTTACC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.38
Consensus pattern (39 bp):
ATGTATCAATACATTCAACAATATATCGATACATTATGA
Found at i:2694038 original size:20 final size:20
Alignment explanation
Indices: 2694013--2694067 Score: 110
Period size: 20 Copynumber: 2.8 Consensus size: 20
2694003 TTTTTACCTA
2694013 AATGTATCGATACATTGAAT
1 AATGTATCGATACATTGAAT
2694033 AATGTATCGATACATTGAAT
1 AATGTATCGATACATTGAAT
2694053 AATGTATCGATACAT
1 AATGTATCGATACAT
2694068 CTAGTTAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTGAAT
Found at i:2694955 original size:23 final size:23
Alignment explanation
Indices: 2694928--2694983 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 23
2694918 AGCCTTTGAC
2694928 CATGCATTTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
2694951 CATGCA-TTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
2694973 CATGCATTTTT
1 CATGCATTTTT
2694984 AACATGTCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 22 0.69
23 10 0.31
ACGTcount: A:0.18, C:0.11, G:0.09, T:0.62
Consensus pattern (23 bp):
CATGCATTTTTTTTATTATGTTT
Found at i:2694990 original size:20 final size:21
Alignment explanation
Indices: 2694936--2694990 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
2694926 ACCATGCATT
**
2694936 TTTTTTATTATGTTTCATGCA
1 TTTTTTAACATGTTTCATGCA
**
2694957 TTTTTTTATTATGTTTCATGCA
1 -TTTTTTAACATGTTTCATGCA
2694979 -TTTTTAACATGT
1 TTTTTTAACATGT
2694991 CCAGCATCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 10 0.32
22 21 0.68
ACGTcount: A:0.20, C:0.09, G:0.09, T:0.62
Consensus pattern (21 bp):
TTTTTTAACATGTTTCATGCA
Found at i:2702559 original size:27 final size:27
Alignment explanation
Indices: 2702482--2703220 Score: 1138
Period size: 27 Copynumber: 27.0 Consensus size: 27
2702472 TGGCATTTCT
*
2702482 TTTTGAAGTCCACAACTCCGTGGCATCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
*
2702510 TTTTAAAGTCCACAACTCTGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
* *
2702538 TTTTAAATCCACAACTCCGTGGCACTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
2702565 TTTTAAAGTCCACAACTCCGTGGCACTC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
2702593 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
2702621 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
** *
2702648 TTCAAAGTCCACAACTCCGTGGCACTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
2702675 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
*
2702703 TTTTAAGTCCACAACTCTGTGGCA-CC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
2702729 TTTCAAAGTCCACAACTCCGTGGCACCC
1 TTT-TAAGTCCACAACTCCGTGGCACCC
* * *
2702757 TTTTAAGTCCACAACTCCGTAGCGCTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
2702784 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
2702812 TCTTTAAGTCCACAACTCCGTGGCACCC
1 T-TTTAAGTCCACAACTCCGTGGCACCC
*
2702840 TTTTAAGTCCATAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
2702867 TTTTAAGTCCACAACTCCGTGGCATCCC
1 TTTTAAGTCCACAACTCCGTGGCA-CCC
*
2702895 TTTTAAGTCCACAACTCCGTGGCATCTC
1 TTTTAAGTCCACAACTCCGTGGCA-CCC
2702923 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
2702950 TTTTAAGTCCACAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
* * *
2702977 TTTTAAGTCCACAACTCCATAGCACCT
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
2703004 TTTTAAGTCCACAACTCCGTGGCACTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
2703031 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
* *
2703058 TTTTAAGTCCACAACTCCATGGCACCT
1 TTTTAAGTCCACAACTCCGTGGCACCC
2703085 TTTTAAGTCCACAACTCCGTGGCATCCC
1 TTTTAAGTCCACAACTCCGTGGCA-CCC
* *
2703113 TTTTAAGACCACAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
2703140 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
2703167 TTTTAAGTCCACAACTCCGTGGCATCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
2703194 TTTTAAATCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
2703221 ATTTCAAAGC
Statistics
Matches: 654, Mismatches: 49, Indels: 17
0.91 0.07 0.02
Matches are distributed among these distances:
26 5 0.01
27 410 0.63
28 236 0.36
29 3 0.00
ACGTcount: A:0.24, C:0.35, G:0.14, T:0.27
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCGTGGCACCC
Found at i:2702693 original size:82 final size:81
Alignment explanation
Indices: 2702482--2703220 Score: 1117
Period size: 82 Copynumber: 9.0 Consensus size: 81
2702472 TGGCATTTCT
* *
2702482 TTTTGAAGTCCACAACTCCGTGGCA-TCCTTTTAAAGTCCACAACTCTGTGGCACCCTTTTAAAT
1 TTTT-AAGTCCACAACTCCGTGGCACT-CTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGT
*
2702546 CCACAACTCCGTGGCACTC
63 CCACAACTCCGTGGCACCC
2702565 TTTTAAAGTCCACAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
1 TTTT-AAGTCCACAACTCCGTGGCACTCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTC
2702630 CACAACTCCGTGGCACCC
64 CACAACTCCGTGGCACCC
**
2702648 TTCAAAGTCCACAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 TTTTAAGTCCACAACTCCGTGGCACTCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
*
2702713 ACAACTCTGTGGCA-CC
65 ACAACTCCGTGGCACCC
* * * * *
2702729 TTTCAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTAGCGCTCTTTTAAAGTC
1 TTT-TAAGTCCACAACTCCGTGGCACTCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGTC
2702794 CACAACTCCGTGGCACCC
64 CACAACTCCGTGGCACCC
* *
2702812 TCTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCATAACTCCGTGGCACCCTTTTAAGTCC
1 T-TTTAAGTCCACAACTCCGTGGCACTCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
2702877 ACAACTCCGTGGCATCCC
65 ACAACTCCGTGGCA-CCC
2702895 TTTTAAGTCCACAACTCCGTGGCATCTCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 TTTTAAGTCCACAACTCCGTGGCA-CTCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
*
2702960 ACAACTCTGTGGCACCC
65 ACAACTCCGTGGCACCC
* * *
2702977 TTTTAAGTCCACAACTCCATAGCAC-CTTTTTAAGTCCACAACTCCGTGGCACTCTTTTAAGTCC
1 TTTTAAGTCCACAACTCCGTGGCACTC-TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
2703041 ACAACTCCGTGGCACCC
65 ACAACTCCGTGGCACCC
* *
2703058 TTTTAAGTCCACAACTCCATGGCAC-CTTTTTAAGTCCACAACTCCGTGGCATCCCTTTTAAGAC
1 TTTTAAGTCCACAACTCCGTGGCACTC-TTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTC
*
2703122 CACAACTCTGTGGCACCC
64 CACAACTCCGTGGCACCC
* * *
2703140 TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAATCCA
1 TTTTAAGTCCACAACTCCGTGGCACTCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCA
2703205 CAACTCCGTGGCACCC
66 CAACTCCGTGGCACCC
2703221 ATTTCAAAGC
Statistics
Matches: 612, Mismatches: 34, Indels: 22
0.92 0.05 0.03
Matches are distributed among these distances:
80 1 0.00
81 157 0.26
82 263 0.43
83 188 0.31
84 3 0.00
ACGTcount: A:0.24, C:0.35, G:0.14, T:0.27
Consensus pattern (81 bp):
TTTTAAGTCCACAACTCCGTGGCACTCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCA
CAACTCCGTGGCACCC
Found at i:2703258 original size:32 final size:32
Alignment explanation
Indices: 2703203--2703932 Score: 1246
Period size: 32 Copynumber: 22.8 Consensus size: 32
2703193 CTTTTAAATC
* *
2703203 CACAACTCCGTGGC-ACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
2703234 CACAAGTCAGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
2703266 CACAAGTCGGTGGCAACCCATTTAAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
2703298 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
2703330 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
2703362 CACAAGTCGGTGGCAACCCATTTAAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
2703394 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
2703426 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
2703458 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
2703490 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
2703522 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
2703554 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
2703586 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
2703618 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
2703650 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
2703682 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
2703714 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
2703746 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
2703778 CACAAGTCGGTGGCAACCCATTTCAAAACCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
2703810 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
2703842 CACAAGTCGGTGGCAACTCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
2703874 CACAAGTCGGTGGCAACCCATTTAAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
** * *
2703906 TGCAAGTCAGTGGCAACCCTTTTCAAA
1 CACAAGTCGGTGGCAACCCATTTCAAA
2703933 TCACCATTTT
Statistics
Matches: 673, Mismatches: 25, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
31 12 0.02
32 661 0.98
ACGTcount: A:0.32, C:0.35, G:0.18, T:0.15
Consensus pattern (32 bp):
CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
Found at i:2704488 original size:20 final size:20
Alignment explanation
Indices: 2704460--2704534 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
2704450 TCATACCCTG
2704460 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
2704480 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
2704500 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
2704520 ATGTATCGATACATT
1 ATGTATCGATACATT
2704535 ATGTCTTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:2704527 original size:40 final size:39
Alignment explanation
Indices: 2704460--2704537 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
2704450 TCATACCCTG
* *
2704460 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
2704500 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
2704538 TCTTTTTACC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:2705474 original size:23 final size:23
Alignment explanation
Indices: 2705447--2705502 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 23
2705437 AGCCTTTGAC
2705447 CATGCATTTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
2705470 CATGCA-TTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
2705492 CATGCATTTTT
1 CATGCATTTTT
2705503 AACATGTCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 22 0.69
23 10 0.31
ACGTcount: A:0.18, C:0.11, G:0.09, T:0.62
Consensus pattern (23 bp):
CATGCATTTTTTTTATTATGTTT
Found at i:2705509 original size:20 final size:21
Alignment explanation
Indices: 2705455--2705509 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
2705445 ACCATGCATT
**
2705455 TTTTTTATTATGTTTCATGCA
1 TTTTTTAACATGTTTCATGCA
**
2705476 TTTTTTTATTATGTTTCATGCA
1 -TTTTTTAACATGTTTCATGCA
2705498 -TTTTTAACATGT
1 TTTTTTAACATGT
2705510 CCAGCATCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 10 0.32
22 21 0.68
ACGTcount: A:0.20, C:0.09, G:0.09, T:0.62
Consensus pattern (21 bp):
TTTTTTAACATGTTTCATGCA
Found at i:2709925 original size:18 final size:19
Alignment explanation
Indices: 2709888--2709925 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
2709878 CTAGAGTCAT
*
2709888 ATTTTTCTAAATCTTTTAA
1 ATTTTTCTAAATCTTATAA
*
2709907 ATTTTTCTAGATC-TATAA
1 ATTTTTCTAAATCTTATAA
2709925 A
1 A
2709926 AGAAGTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.34, C:0.11, G:0.03, T:0.53
Consensus pattern (19 bp):
ATTTTTCTAAATCTTATAA
Found at i:2710893 original size:2 final size:2
Alignment explanation
Indices: 2710886--2710918 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
2710876 TTAGTACTGT
2710886 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2710919 TCAATGACTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2717903 original size:3 final size:3
Alignment explanation
Indices: 2717895--2717921 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
2717885 AAGATATATC
2717895 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
2717922 GTATCGTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:2721662 original size:11 final size:12
Alignment explanation
Indices: 2721631--2721661 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
2721621 AAGTTAGTGG
2721631 TCGAAAAATTGA
1 TCGAAAAATTGA
2721643 TCGAAAAATTGA
1 TCGAAAAATTGA
2721655 TCGAAAA
1 TCGAAAA
2721662 TGTAGAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.52, C:0.10, G:0.16, T:0.23
Consensus pattern (12 bp):
TCGAAAAATTGA
Found at i:2738203 original size:86 final size:85
Alignment explanation
Indices: 2738035--2738795 Score: 725
Period size: 86 Copynumber: 8.8 Consensus size: 85
2738025 AATATGATTT
* * * * ** *
2738035 CTTTTCAAAGCTCACAAGTCAGTGGCTTTTTTTCAAAGCCCATAAGTCAGCAGCAC-CTTCTCAA
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAA
2738099 AGCCCACAAGTCAGTGGCAC
66 AGCCCACAAGTCAGTGGCAC
* * * * * * *
2738119 CTTCTAAAAGGCCACAAATCAGTGGCATCTTTTCAAAACTCACAAGTTAGTGGCAACTCTTTTCA
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGC-ACTCTTTTCA
* * *
2738184 AAGCCCATAAGTCAATGGCAT
65 AAGCCCACAAGTCAGTGGCAC
* * * *
2738205 CATTTCAAAGCTCACAAGTCAGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGACAC-CTTCTC
1 CTTTTCAAAGCCCACAAGTCAGTGGC-A-TCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
* *
2738269 AAAGCTCACAAGTCAGTGGCAT
64 AAAGCCCACAAGTCAGTGGCAC
* *
2738291 CTTTTCAAAACCCACAAGTCAGTGGCAACTCTTTTTCAAAGCCCACAAGTCAGTGGCAACCCTTT
1 CTTTTCAAAGCCCACAAGTCAGTGGC-A-TC-TTTTCAAAGCCCACAAGTCAGTGGC-ACTCTTT
*
2738356 TCAAAGCCTAC-A---AGTGGCAATC
62 TCAAAGCCCACAAGTCAGTGGC-A-C
* * *
2738378 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCTACAAGTCAGTGGCAACCCTTTTCA
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGC-ACTCTTTTCA
2738443 AAGCCCACAAGTCAGTGGCAC
65 AAGCCCACAAGTCAGTGGCAC
* * * * *
2738464 ATTCTCAAAGCCCACAAGTAAGTGGCACCTTCTT-AAAGCCCACAAGTGAGTGGCA-TCTTTTCA
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCTT-TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
*
2738527 ATGCCCACAAGTCAGTGGCAAC
65 AAGCCCACAAGTCAGTGGC-AC
* * * * * *
2738549 CTTTTTCAAAGCCTAGAAATTAGTGGCA-CATTTTCAAAACCCACAAGTCAGTGGCA-TCATTTC
1 C-TTTTCAAAGCCCACAAGTCAGTGGCATC-TTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
* *
2738612 AAAGCCCACACAAGTTAATGGCAC
64 AAAG-CC-CACAAGTCAGTGGCAC
* * * * *
2738636 CATTTCAAAGCCCACAAGTCTGTGGCATCGTTTCAAAGCCCACAAGTTAGTGGCA-TCCTTTCAA
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAA
*
2738700 AGCCCATAAGTCAGTGGCAC
66 AGCCCACAAGTCAGTGGCAC
* ** * * * ** ** *
2738720 CATTTCAAAGCTTATAAGTCGGTAGCATCCTTTTTCTAAAATCCACACTTCAGTGGCAACTCATT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAT-C-TTTTC-AAAGCCCACAAGTCAGTGGC-ACTCTTT
2738785 TCAAAGCCCAC
62 TCAAAGCCCAC
2738796 CCAAGTTGGT
Statistics
Matches: 561, Mismatches: 90, Indels: 47
0.80 0.13 0.07
Matches are distributed among these distances:
84 143 0.25
85 20 0.04
86 251 0.45
87 76 0.14
88 45 0.08
89 26 0.05
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (85 bp):
CTTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAA
AGCCCACAAGTCAGTGGCAC
Found at i:2738294 original size:114 final size:112
Alignment explanation
Indices: 2738037--2738795 Score: 715
Period size: 114 Copynumber: 6.6 Consensus size: 112
2738027 TATGATTTCT
* * * ** * *
2738037 TTTCAAAGCTCACAAGTCAGTGGCTTTTTTTCAAAGCCCATAAGTCAGCAGC-ACCTTCTCAAAG
1 TTTCAAAGCTCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCAATCTTTTCAAAG
* * * * *
2738101 CCCACAAGTCAGTGGCACCTTCTAAAAGGCCACAAATCAGTGGCATCT
66 CCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCA-CC
* * * * *
2738149 TTTCAAAACTCACAAGTTAGTGGCAACTCTTTTCAAAGCCCATAAGTCAATGGC-ATCATTTCAA
1 TTTCAAAGCTCACAAGTCAGTGGC-A-TCTTTTCAAAGCCCACAAGTCAGTGGCAATCTTTTCAA
* *
2738213 AGCTCACAAGTCAGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGACACC
64 AGCCCACAAGTCAGTGGC-AC-CTTTTCAAAGCCCACAAGTCAGTGGCACC
*
2738264 TTCTCAAAGCTCACAAGTCAGTGGCATCTTTTCAAAACCCACAAGTCAGTGGCAACTCTTTTTCA
1 TT-TCAAAGCTCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCAA-TC-TTTTCA
*
2738329 AAGCCCACAAGTCAGTGGCAACCCTTTTCAAAGCCTAC-A---AGTGGCAATCC
63 AAGCCCACAAGTCAGTGGC-A-CCTTTTCAAAGCCCACAAGTCAGTGGC-A-CC
* * * *
2738379 TTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCTACAAGTCAGTGGCAACCCTTTTCAA
1 -TTTCAAAGCTCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCAA-TCTTTTCAA
* * *
2738444 AGCCCACAAGTCAGTGGCACATTCTCAAAGCCCACAAGTAAGTGGCACC
64 AGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCACC
* * * * *
2738493 TTCTTAAAGCCCACAAGTGAGTGGCATCTTTTCAATGCCCACAAGTCAGTGGCAACCTTTTTCAA
1 TT-TCAAAGCTCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCAATC-TTTTCAA
* * * * * * *
2738558 AGCCTAGAAATTAGTGGCACATTTTCAAAACCCACAAGTCAGTGGCATCA
64 AGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCA-CC
* * * * * * *
2738608 TTTCAAAGCCCACACAAGTTAATGGCACCATTTCAAAGCCCACAAGTCTGTGGC-ATCGTTTCAA
1 TTTCAAAG--CTCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCAATCTTTTCAA
* *
2738672 AGCCCACAAGTTAGTGGCATCC-TTTCAAAGCCCATAAGTCAGTGGCACC
64 AGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCACC
* * * * ** ** *
2738721 ATTTCAAAGCTTATAAGTCGGTAGCATCCTTTTTCTAAAATCCACACTTCAGTGGCAACTCATTT
1 -TTTCAAAGCTCACAAGTCAGTGGCAT-C-TTTTC-AAAGCCCACAAGTCAGTGGCAA-TCTTTT
2738786 CAAAGCCCAC
61 CAAAGCCCAC
2738796 CCAAGTTGGT
Statistics
Matches: 540, Mismatches: 79, Indels: 51
0.81 0.12 0.08
Matches are distributed among these distances:
112 45 0.08
113 13 0.02
114 255 0.47
115 81 0.15
116 91 0.17
117 54 0.10
118 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (112 bp):
TTTCAAAGCTCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCAATCTTTTCAAAG
CCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCACC
Found at i:2738738 original size:28 final size:28
Alignment explanation
Indices: 2738035--2738730 Score: 704
Period size: 28 Copynumber: 24.4 Consensus size: 28
2738025 AATATGATTT
* **
2738035 CTTTTCAAAGCTCACAAGTCAGTGGCTT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * **
2738063 TTTTTCAAAGCCCATAAGTCAGCAGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
*
2738091 CTTCTCAAAGCCCACAAGTCAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * * * *
2738119 CTTCTAAAAGGCCACAAATCAGTGGCAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * *
2738147 CTTTTCAAAACTCACAAGTTAGTGGCAAC
1 CTTTTCAAAGCCCACAAGTCAGTGGC-AC
* * *
2738176 TCTTTTCAAAGCCCATAAGTCAATGGCAT
1 -CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
2738205 CATTTCAAAGCTCACAAGTCAGTGGCAAC
1 CTTTTCAAAGCCCACAAGTCAGTGGC-AC
*
2738234 TCTTTTCAAAGCCCACAAGTCAGTGACAC
1 -CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * *
2738263 CTTCTCAAAGCTCACAAGTCAGTGGCAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
*
2738291 CTTTTCAAAACCCACAAGTCAGTGGCAAC
1 CTTTTCAAAGCCCACAAGTCAGTGGC-AC
2738320 TCTTTTTCAAAGCCCACAAGTCAGTGGCAACC
1 -C-TTTTCAAAGCCCACAAGTCAGTGGC-A-C
*
2738352 CTTTTCAAAGCCTAC-A---AGTGGCAATC
1 CTTTTCAAAGCCCACAAGTCAGTGGC-A-C
2738378 CTTTTCAAAGCCCACAAGTCAGTGGCATC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-C
*
2738407 C-TTTCAAAGCCTACAAGTCAGTGGCAACC
1 CTTTTCAAAGCCCACAAGTCAGTGGC-A-C
2738436 CTTTTCAAAGCCCACAAGTCAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * *
2738464 ATTCTCAAAGCCCACAAGTAAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
2738492 CTTCTT-AAAGCCCACAAGTGAGTGGCAT
1 CTT-TTCAAAGCCCACAAGTCAGTGGCAC
*
2738520 CTTTTCAATGCCCACAAGTCAGTGGCAAC
1 CTTTTCAAAGCCCACAAGTCAGTGGC-AC
* * * *
2738549 CTTTTTCAAAGCCTAGAAATTAGTGGCAC
1 C-TTTTCAAAGCCCACAAGTCAGTGGCAC
* * *
2738578 ATTTTCAAAACCCACAAGTCAGTGGCAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * *
2738606 CATTTCAAAGCCCACACAAGTTAATGGCAC
1 CTTTTCAAAG-CC-CACAAGTCAGTGGCAC
* * *
2738636 CATTTCAAAGCCCACAAGTCTGTGGCAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
2738664 CGTTTCAAAGCCCACAAGTTAGTGGCATC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-C
*
2738693 C-TTTCAAAGCCCATAAGTCAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
*
2738720 CATTTCAAAGC
1 CTTTTCAAAGC
2738731 TTATAAGTCG
Statistics
Matches: 555, Mismatches: 91, Indels: 44
0.80 0.13 0.06
Matches are distributed among these distances:
26 23 0.04
27 5 0.01
28 344 0.62
29 25 0.05
30 130 0.23
31 27 0.05
32 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (28 bp):
CTTTTCAAAGCCCACAAGTCAGTGGCAC
Found at i:2739130 original size:54 final size:54
Alignment explanation
Indices: 2738972--2739135 Score: 156
Period size: 54 Copynumber: 3.1 Consensus size: 54
2738962 CTTTATCAAC
* * * * * *
2738972 CCAATGTCACTGGCCTTGAGTTAACATATTGGCACTCATCCTCTTTCTTAAAGT
1 CCAATGTCACAGGCATTGAATCAACACATTGGCACTCATCCTCTTTCTTTAAGT
* * * *
2739026 CTAATGTCACAGGCATTGCATCAGCACGTTGGCACGT--TCCTC-TTCTTTAAGT
1 CCAATGTCACAGGCATTGAATCAACACATTGGCAC-TCATCCTCTTTCTTTAAGT
** * *
2739078 CCAATGT-AGTTGGCTTTGAATCAACACATTGACACTCATCCTCTTTCTTTAAGT
1 CCAATGTCA-CAGGCATTGAATCAACACATTGGCACTCATCCTCTTTCTTTAAGT
2739132 CCAA
1 CCAA
2739136 GCCTTGAATC
Statistics
Matches: 87, Mismatches: 18, Indels: 10
0.76 0.16 0.09
Matches are distributed among these distances:
51 2 0.02
52 34 0.39
53 10 0.11
54 40 0.46
55 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.34
Consensus pattern (54 bp):
CCAATGTCACAGGCATTGAATCAACACATTGGCACTCATCCTCTTTCTTTAAGT
Found at i:2748944 original size:18 final size:18
Alignment explanation
Indices: 2748916--2748973 Score: 57
Period size: 17 Copynumber: 3.3 Consensus size: 18
2748906 TTATAAATTT
2748916 AAATTATTATTTATTAATA
1 AAATTA-TATTTATTAATA
* *
2748935 AAATTATATTT-TTATTT
1 AAATTATATTTATTAATA
*
2748952 AAATT-TAATTATTAATA
1 AAATTATATTTATTAATA
*
2748969 TAATT
1 AAATT
2748974 CTTTGATATA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
16 4 0.12
17 17 0.53
18 5 0.16
19 6 0.19
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
AAATTATATTTATTAATA
Found at i:2748948 original size:20 final size:21
Alignment explanation
Indices: 2748902--2748950 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
2748892 CTTTCCCAAA
* *
2748902 ATTTTTATAAATTTAAATTAT
1 ATTTTTATTAATTAAAATTAT
*
2748923 -TATTTATTAA-TAAAATTAT
1 ATTTTTATTAATTAAAATTAT
2748942 ATTTTTATT
1 ATTTTTATT
2748951 TAAATTTAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTTTTATTAATTAAAATTAT
Found at i:2750111 original size:3 final size:3
Alignment explanation
Indices: 2750092--2750145 Score: 90
Period size: 3 Copynumber: 18.0 Consensus size: 3
2750082 TGACGGAAAG
* *
2750092 TAT TAC TAT TTT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
2750140 TAT TAT
1 TAT TAT
2750146 GTCTACTTCC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:2750956 original size:39 final size:40
Alignment explanation
Indices: 2750912--2750997 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 40
2750902 CTGGCACTAC
* * *
2750912 CACCCAATTACATATTT-GATTTTCGTGGATTGGTATAG-
1 CACCCAACTACATATTTAAATTTTCGTGGATTGGCATAGT
* *
2750950 CTACCCAACTGCATATTTAAATTTTTGTGGATTGGCATAGT
1 C-ACCCAACTACATATTTAAATTTTCGTGGATTGGCATAGT
2750991 CACCCAA
1 CACCCAA
2750998 ATACTAACAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
38 1 0.03
39 14 0.35
40 24 0.60
41 1 0.03
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (40 bp):
CACCCAACTACATATTTAAATTTTCGTGGATTGGCATAGT
Found at i:2751205 original size:17 final size:19
Alignment explanation
Indices: 2751185--2751227 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 19
2751175 AAAAATTTAA
2751185 ATATATTTATAT-TAA-AT
1 ATATATTTATATCTAATAT
2751202 ATATATTTATATCTAATAT
1 ATATATTTATATCTAATAT
*
2751221 CTATATT
1 ATATATT
2751228 CGAATATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 12 0.52
18 3 0.13
19 8 0.35
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (19 bp):
ATATATTTATATCTAATAT
Found at i:2752429 original size:23 final size:22
Alignment explanation
Indices: 2752386--2752429 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
2752376 GTAATTTTAT
*
2752386 TAAAAATTTTTTAAAATAAATA
1 TAAAAATTTTTTAAAAGAAATA
* *
2752408 TAAATAATTTTTTTAACGAAAT
1 TAAA-AATTTTTTAAAAGAAAT
2752430 GGTATTATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (22 bp):
TAAAAATTTTTTAAAAGAAATA
Found at i:2752876 original size:31 final size:28
Alignment explanation
Indices: 2752822--2752899 Score: 75
Period size: 31 Copynumber: 2.6 Consensus size: 28
2752812 AATAAATTGA
* *
2752822 TATAATCTAATTTATTGATAATATAAAATT
1 TATAATTTAATATATT-A-AATATAAAATT
**
2752852 TATATATGGTTAATATATTAAATATAATTTT
1 TATA-AT--TTAATATATTAAATATAAAATT
2752883 TATAATTTAATATATTA
1 TATAATTTAATATATTA
2752900 CTTTTACTCA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
28 11 0.27
30 6 0.15
31 15 0.37
32 1 0.02
33 8 0.20
ACGTcount: A:0.45, C:0.01, G:0.04, T:0.50
Consensus pattern (28 bp):
TATAATTTAATATATTAAATATAAAATT
Found at i:2754564 original size:8 final size:8
Alignment explanation
Indices: 2754553--2754586 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
2754543 CAATAATTAC
*
2754553 AAGAAAGA
1 AAGAAAAA
2754561 AAGAAAAA
1 AAGAAAAA
2754569 AA-AAAAA
1 AAGAAAAA
2754576 AAGAAAAA
1 AAGAAAAA
2754584 AAG
1 AAG
2754587 TCTGTCCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
7 7 0.29
8 17 0.71
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (8 bp):
AAGAAAAA
Found at i:2757120 original size:19 final size:20
Alignment explanation
Indices: 2757072--2757122 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
2757062 ATTTAAATAA
*
2757072 ATTTAAAT-AATTAAATTTT
1 ATTTAAATAAATTAAATATT
* *
2757091 AATTAACTAAATTAAA-ATT
1 ATTTAAATAAATTAAATATT
2757110 ATTTAAATAAATT
1 ATTTAAATAAATT
2757123 TGATCGATTA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTTAAATAAATTAAATATT
Found at i:2757325 original size:25 final size:23
Alignment explanation
Indices: 2757296--2757341 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
2757286 CAAACTATTT
2757296 AATCAAATAAAATTAAAACTGAACA
1 AATCAAATAAAA-T-AAACTGAACA
*
2757321 AATCAAATCAAATAAACTGAA
1 AATCAAATAAAATAAACTGAA
2757342 ATCATTCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 8 0.40
24 1 0.05
25 11 0.55
ACGTcount: A:0.63, C:0.13, G:0.04, T:0.20
Consensus pattern (23 bp):
AATCAAATAAAATAAACTGAACA
Found at i:2759241 original size:7 final size:7
Alignment explanation
Indices: 2759223--2759257 Score: 61
Period size: 7 Copynumber: 4.9 Consensus size: 7
2759213 TTCTATTCTC
2759223 TTCTCACT
1 TTCTC-CT
2759231 TTCTCCT
1 TTCTCCT
2759238 TTCTCCT
1 TTCTCCT
2759245 TTCTCCT
1 TTCTCCT
2759252 TTCTCC
1 TTCTCC
2759258 AATCTATGGC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 22 0.81
8 5 0.19
ACGTcount: A:0.03, C:0.43, G:0.00, T:0.54
Consensus pattern (7 bp):
TTCTCCT
Found at i:2761628 original size:15 final size:16
Alignment explanation
Indices: 2761610--2761642 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
2761600 AAAAAATTAT
2761610 ATTT-AAATAATAAAA
1 ATTTAAAATAATAAAA
*
2761625 ATTTAAAATTATAAAA
1 ATTTAAAATAATAAAA
2761641 AT
1 AT
2761643 AATAAAATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
ATTTAAAATAATAAAA
Found at i:2762833 original size:15 final size:15
Alignment explanation
Indices: 2762813--2762902 Score: 56
Period size: 15 Copynumber: 5.7 Consensus size: 15
2762803 ATATTTTTAA
2762813 TAAATTTTTAAAATT
1 TAAATTTTTAAAATT
* **
2762828 TAAATTTCTTTTATGTT
1 TAAA-TT-TTTAAAATT
* **
2762845 TAAGTTTTTTTAATT
1 TAAATTTTTAAAATT
*
2762860 CAAATGATTTT-AAATT
1 TAAAT--TTTTAAAATT
2762876 TAAATATTTTAAAATT
1 TAAAT-TTTTAAAATT
*
2762892 TAAATATTTAA
1 TAAATTTTTAA
2762903 TTTTTTATAA
Statistics
Matches: 58, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
15 23 0.40
16 22 0.38
17 13 0.22
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.54
Consensus pattern (15 bp):
TAAATTTTTAAAATT
Found at i:2762870 original size:16 final size:15
Alignment explanation
Indices: 2762851--2762900 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
2762841 TGTTTAAGTT
*
2762851 TTTTTAATTCAAATGA
1 TTTTAAATTCAAAT-A
*
2762867 TTTTAAATTTAAATA
1 TTTTAAATTCAAATA
*
2762882 TTTTAAAATTTAAATA
1 TTTT-AAATTCAAATA
2762898 TTT
1 TTT
2762901 AATTTTTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
15 5 0.16
16 26 0.84
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (15 bp):
TTTTAAATTCAAATA
Found at i:2762918 original size:24 final size:22
Alignment explanation
Indices: 2762868--2762927 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
2762858 TTCAAATGAT
2762868 TTTAAATTTAAATATTTTAAAA
1 TTTAAATTTAAATATTTTAAAA
* * *
2762890 TTTAAATATTTAATTTTTTATAA
1 TTTAAAT-TTAAATATTTTAAAA
2762913 TATTAAA-TTAAATAT
1 T-TTAAATTTAAATAT
2762928 AAATTTTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
22 13 0.42
23 13 0.42
24 5 0.16
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
TTTAAATTTAAATATTTTAAAA
Found at i:2763977 original size:2 final size:2
Alignment explanation
Indices: 2763970--2764003 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
2763960 CATTTCATGG
2763970 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2764004 TAATTTGATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2764423 original size:41 final size:40
Alignment explanation
Indices: 2764354--2764430 Score: 95
Period size: 41 Copynumber: 1.9 Consensus size: 40
2764344 ATCAAATCAA
*
2764354 TAAAAAATTAACATTTAATTTAATTAAATTATATAATTATTT
1 TAAAAAATTAACATTTAATTAAATTAAA-TATA-AATTATTT
*
2764396 TAAAAAA-TAATATTTAA-TAAATATAAATATAAATT
1 TAAAAAATTAACATTTAATTAAAT-TAAATATAAATT
2764431 TAAATTATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
39 4 0.12
40 8 0.25
41 13 0.41
42 7 0.22
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (40 bp):
TAAAAAATTAACATTTAATTAAATTAAATATAAATTATTT
Found at i:2764463 original size:20 final size:22
Alignment explanation
Indices: 2764420--2764464 Score: 60
Period size: 19 Copynumber: 2.2 Consensus size: 22
2764410 TAATAAATAT
2764420 AAATATAAATTTAAATTATAAA
1 AAATATAAATTTAAATTATAAA
*
2764442 AAATAT-AA-TTAAATT-TACA
1 AAATATAAATTTAAATTATAAA
2764461 AAAT
1 AAAT
2764465 TTTACCTTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 7 0.32
20 7 0.32
21 2 0.09
22 6 0.27
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
AAATATAAATTTAAATTATAAA
Found at i:2765408 original size:19 final size:18
Alignment explanation
Indices: 2765366--2765405 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
2765356 TATTTTAAAT
2765366 TTATTA-AAAATAAAAAA
1 TTATTATAAAATAAAAAA
2765383 TTATTATAAAATAAAAAA
1 TTATTATAAAATAAAAAA
2765401 TTATT
1 TTATT
2765406 TATTATCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 6 0.27
18 16 0.73
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
TTATTATAAAATAAAAAA
Found at i:2766247 original size:17 final size:18
Alignment explanation
Indices: 2766225--2766295 Score: 62
Period size: 17 Copynumber: 4.2 Consensus size: 18
2766215 TTTTATTTTT
*
2766225 TATTATA-ATTATTTAAA
1 TATTATATATTATATAAA
2766242 TATTATATATTTATATAAA
1 TATTATATA-TTATATAAA
* *
2766261 T-TTA-AAAATAT-TAAA
1 TATTATATATTATATAAA
*
2766276 AATT-TATATTATATAAA
1 TATTATATATTATATAAA
2766293 TAT
1 TAT
2766296 AAATATATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
15 4 0.10
16 10 0.24
17 15 0.36
18 4 0.10
19 9 0.21
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TATTATATATTATATAAA
Found at i:2766258 original size:27 final size:26
Alignment explanation
Indices: 2766235--2766284 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
2766225 TATTATAATT
* *
2766235 ATTT-AAATATTATATATTTATATAA
1 ATTTAAAATATTAAAAATTTATATAA
2766260 ATTTAAAAATATTAAAAATTTATAT
1 ATTT-AAAATATTAAAAATTTATAT
2766285 TATATAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 4 0.19
27 17 0.81
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (26 bp):
ATTTAAAATATTAAAAATTTATATAA
Found at i:2766290 original size:32 final size:34
Alignment explanation
Indices: 2766237--2766304 Score: 95
Period size: 32 Copynumber: 2.1 Consensus size: 34
2766227 TTATAATTAT
* *
2766237 TTAAATATTATATATTTATATAAATTTAAAAATA
1 TTAAAAATTATATATTTATATAAATATAAAAATA
*
2766271 TTAAAAATT-TATA-TTATATAAATATAAATATA
1 TTAAAAATTATATATTTATATAAATATAAAAATA
2766303 TT
1 TT
2766305 TATTTTATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
32 19 0.61
33 4 0.13
34 8 0.26
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (34 bp):
TTAAAAATTATATATTTATATAAATATAAAAATA
Found at i:2766364 original size:15 final size:14
Alignment explanation
Indices: 2766312--2766364 Score: 54
Period size: 15 Copynumber: 3.7 Consensus size: 14
2766302 ATTTATTTTA
* *
2766312 TTTTTATATTTAAC
1 TTTTTATATATAAT
*
2766326 ATTTTATAT-TAAT
1 TTTTTATATATAAT
2766339 TTTTTATTATATAAT
1 TTTTTA-TATATAAT
2766354 TTTTTCATATA
1 TTTTT-ATATA
2766365 AAAAATTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
13 8 0.24
14 11 0.33
15 13 0.39
16 1 0.03
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTTTATATATAAT
Found at i:2769023 original size:96 final size:92
Alignment explanation
Indices: 2768862--2769050 Score: 333
Period size: 96 Copynumber: 2.0 Consensus size: 92
2768852 TACCCGTTAA
2768862 AAAAATAATCTCTGAAAAATAAAAATATAATAAGAGAAGAAACCTCGAGACTCCTCGTAACTTGG
1 AAAAATAATCTCTGAAAAATAAAAATATAATAAGAGAAGAAACCTCGAGACTCCTCGTAACTTGG
2768927 AGTCAAGCAAGCTAAAGCTAAGCTAGGG
66 AGTCAAGCAAGCT-AAGCTAAGCTAGGG
*
2768955 AAAAATAATCTCTGAAAATAAATAAAAATATAATAAGAGAGGAAACCTCGAGACTCCTCGTAACT
1 AAAAATAATCTCTG--AA-AAATAAAAATATAATAAGAGAAGAAACCTCGAGACTCCTCGTAACT
2769020 TGGAGTCAAGCAAGCTAAGCTAAGCTAGGG
63 TGGAGTCAAGCAAGCTAAGCTAAGCTAGGG
2769050 A
1 A
2769051 GCTACTTGTG
Statistics
Matches: 92, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
93 14 0.15
95 17 0.18
96 61 0.66
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.20
Consensus pattern (92 bp):
AAAAATAATCTCTGAAAAATAAAAATATAATAAGAGAAGAAACCTCGAGACTCCTCGTAACTTGG
AGTCAAGCAAGCTAAGCTAAGCTAGGG
Found at i:2770591 original size:2 final size:2
Alignment explanation
Indices: 2770586--2770620 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
2770576 CGCGCGTGTC
2770586 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2770621 GTATGTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:2771301 original size:4 final size:4
Alignment explanation
Indices: 2771292--2771322 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
2771282 TCAGACATAA
2771292 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
2771323 CATGGGTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:2777412 original size:20 final size:20
Alignment explanation
Indices: 2777387--2777465 Score: 88
Period size: 20 Copynumber: 3.9 Consensus size: 20
2777377 ACTACCAAAG
2777387 AAATGTATCGATACATTACT
1 AAATGTATCGATACATTACT
2777407 AAATGTATCGATACATGCTTAC-
1 AAATGTATCGATACA---TTACT
* *
2777429 AATTGTATCGATACATTTCT
1 AAATGTATCGATACATTACT
* *
2777449 CATTGTATCGATACATT
1 AAATGTATCGATACATT
2777466 CTGGGTTTTT
Statistics
Matches: 52, Mismatches: 3, Indels: 8
0.83 0.05 0.13
Matches are distributed among these distances:
19 3 0.06
20 31 0.60
22 14 0.27
23 4 0.08
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.38
Consensus pattern (20 bp):
AAATGTATCGATACATTACT
Found at i:2781908 original size:153 final size:153
Alignment explanation
Indices: 2781680--2781974 Score: 378
Period size: 153 Copynumber: 1.9 Consensus size: 153
2781670 TCATAAATGA
* * * * *
2781680 GATGAACCTATTCTAAATGCACACCTTTAGCATAAAAGCATCTAGTGACTACATGGGATTCAGTT
1 GATGAACCTATCCTAAATGCACACCTTTAGCATAAAAGCATCTAGTGACTACATAGAACTCACTT
* * *
2781745 ATAAAAAAATTACTAAAATGCCTTTGAGGTTTACATTCGACGTGAAAGTATCTTGATAACC-CTA
66 ATAAAAAAATTACTAAAATGCCTTTGAGGTATACATTCGACGTGAAAGTATCCTAATAACCTC-A
*
2781809 AATGACATGAAAAGATTATAAAAG
130 AAAGACATGAAAAGATTATAAAAG
* * *
2781833 GATGAACTTATCCTAAATGCACACCTTTGGCATAAAAGCATCTAGTGACTACTTAGAACTCGACT
1 GATGAACCTATCCTAAATGCACACCTTTAGCATAAAAGCATCTAGTGACTACATAGAACTC-ACT
*** * * ** *
2781898 T-TAGGGAAATTACTAAAATGCTTTTGGGGTATATTTTCGATGTGAAAGTATCCTAATAACCTCA
65 TATAAAAAAATTACTAAAATGCCTTTGAGGTATACATTCGACGTGAAAGTATCCTAATAACCTCA
2781962 AAAGACATGAAAA
130 AAAGACATGAAAA
2781975 TGGTATAAAA
Statistics
Matches: 120, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
153 116 0.97
154 4 0.03
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.29
Consensus pattern (153 bp):
GATGAACCTATCCTAAATGCACACCTTTAGCATAAAAGCATCTAGTGACTACATAGAACTCACTT
ATAAAAAAATTACTAAAATGCCTTTGAGGTATACATTCGACGTGAAAGTATCCTAATAACCTCAA
AAGACATGAAAAGATTATAAAAG
Found at i:2787827 original size:28 final size:29
Alignment explanation
Indices: 2787792--2787849 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 29
2787782 ATTGTATTAA
*
2787792 AAAAAGCAAGGAATAT-TATTAAAAA-AAT
1 AAAAAGCAAGAAAT-TGTATTAAAAATAAT
2787820 AAAAAGCAAGAAATTGTATTAAAAATAAT
1 AAAAAGCAAGAAATTGTATTAAAAATAAT
2787849 A
1 A
2787850 GTTAAGTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 1 0.04
28 22 0.81
29 4 0.15
ACGTcount: A:0.64, C:0.03, G:0.10, T:0.22
Consensus pattern (29 bp):
AAAAAGCAAGAAATTGTATTAAAAATAAT
Found at i:2788128 original size:39 final size:40
Alignment explanation
Indices: 2788045--2788128 Score: 104
Period size: 39 Copynumber: 2.2 Consensus size: 40
2788035 GACAAAGTTT
2788045 TAAA-AAAATATAATCTTAATCTTATAATATATAATATAA
1 TAAATAAAATATAATCTTAATCTTATAATATATAATATAA
* * *
2788084 T-AATAAAATATTATTTTAATGGTTATAA-A-ATAATATAA
1 TAAATAAAATATAATCTTAAT-CTTATAATATATAATATAA
2788122 TAAATAA
1 TAAATAA
2788129 TAATTGATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
38 12 0.31
39 21 0.54
40 6 0.15
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.39
Consensus pattern (40 bp):
TAAATAAAATATAATCTTAATCTTATAATATATAATATAA
Found at i:2793376 original size:78 final size:79
Alignment explanation
Indices: 2793179--2793398 Score: 243
Period size: 78 Copynumber: 2.8 Consensus size: 79
2793169 ACAACGGGGC
* * * * *
2793179 TGGAGTATCCCCGATTATGAAAAATCTG-TGTTTTGGAAATAAAACCGGGGTTGGAGTATCCCCT
1 TGGAGTATCCCTGATTATGAAAAATC-GATGATTTAGAAATAAAACTGGGGTTGGAGTATCCCTT
2793243 CAGAAATAACAGGGT
65 CAGAAATAACAGGGT
* * * * *
2793258 TGGAGTATCCTTGATTAT-AGAAAATCAAT-ATTTTGAAAATAAAATTGGGGTTAGAGTATCCCT
1 TGGAGTATCCCTGATTATGA-AAAATCGATGATTTAG-AAATAAAACTGGGGTTGGAGTATCCCT
2793321 TC-GAAATAAC-GGAGT
64 TCAGAAATAACAGG-GT
* * **
2793336 TGGAGTATCCCTGATTGTGAAAAATCGATGCTTTAGAAATAAGGCTGGGGTTGGAGTATCCCT
1 TGGAGTATCCCTGATTATGAAAAATCGATGATTTAGAAATAAAACTGGGGTTGGAGTATCCCT
2793399 AATTGTGAGA
Statistics
Matches: 117, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
77 2 0.02
78 62 0.53
79 53 0.45
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (79 bp):
TGGAGTATCCCTGATTATGAAAAATCGATGATTTAGAAATAAAACTGGGGTTGGAGTATCCCTTC
AGAAATAACAGGGT
Found at i:2793396 original size:51 final size:51
Alignment explanation
Indices: 2793334--2793448 Score: 149
Period size: 51 Copynumber: 2.3 Consensus size: 51
2793324 AAATAACGGA
* * * *
2793334 GTTGGAGTATCCCTGATTGTGAAAAATCGATGCTTTAGAAATAAGGCTGGG
1 GTTGGAGTATCCCTAATTGTGAAAAATCAATACTTTAGAAATAAAGCTGGG
* * * *
2793385 GTTGGAGTATCCCTAATTGTGAGAAATCAATATTTTGGAAATAAAGTTGGG
1 GTTGGAGTATCCCTAATTGTGAAAAATCAATACTTTAGAAATAAAGCTGGG
*
2793436 GTTGGAATATCCC
1 GTTGGAGTATCCC
2793449 CTCGAAAATA
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.31
Consensus pattern (51 bp):
GTTGGAGTATCCCTAATTGTGAAAAATCAATACTTTAGAAATAAAGCTGGG
Found at i:2793464 original size:28 final size:28
Alignment explanation
Indices: 2793433--2793502 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
2793423 AAATAAAGTT
*
2793433 GGGGTTGGAATATCCCCTCGA-AAATAGC
1 GGGGTTGGAATATCCCC-CGAGAAATAAC
2793461 GGGGTTGGAATAT-CCCCGATGAAATAAC
1 GGGGTTGGAATATCCCCCGA-GAAATAAC
*
2793489 GGGGTTGGAGTATC
1 GGGGTTGGAATATC
2793503 TCGATTGCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
26 3 0.08
27 3 0.08
28 31 0.84
ACGTcount: A:0.27, C:0.17, G:0.33, T:0.23
Consensus pattern (28 bp):
GGGGTTGGAATATCCCCCGAGAAATAAC
Found at i:2793601 original size:51 final size:51
Alignment explanation
Indices: 2793488--2793604 Score: 148
Period size: 51 Copynumber: 2.3 Consensus size: 51
2793478 GATGAAATAA
* *
2793488 CGGGGTTGGAGTAT-CTCGATTGCAAAAAATTGGTGTTTTAGAAATAAAAT
1 CGGGGTTGGAGTATCCTCGATTGCAAAAAATTGGTGTTTCAGAAATAAAAC
* * **
2793538 CAGAGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTCA-AAAGTAAAAC
1 CGGGGTTGGAGTATCCTCGATTGCAAAAAATTGGTGTTTCAGAAA-TAAAAC
*
2793589 CGGGGTTAGAGTATCC
1 CGGGGTTGGAGTATCC
2793605 CTTCAAAAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
50 15 0.27
51 41 0.73
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.30
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCTCGATTGCAAAAAATTGGTGTTTCAGAAATAAAAC
Found at i:2793743 original size:79 final size:78
Alignment explanation
Indices: 2793543--2793763 Score: 216
Period size: 79 Copynumber: 2.8 Consensus size: 78
2793533 AAAATCAGAG
* * ** * *
2793543 TTGGAGTATCCTCGATTGTGAAAAATTGGTG-TTTCAAAAGTAAAACCGGGGTTAGAGTATCCCT
1 TTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAA-TAAAA-CGGGGTTGGAGTATCCCC
* *
2793607 TCAAAAATGACAGGG
64 TCAAAAATAACAGGA
* * *
2793622 TTGGAGTATCCCCAATTGTGAAAAACT-AGTGCTTTAGG-AATAAAATCGGGGTTGGAGTATCCC
1 TTGGAGTATCCCCGATTGTGAAAAATTGA-TG-TTTTGGAAATAAAA-CGGGGTTGGAGTATCCC
2793685 CTCAAAAATAAC-GAGA
63 CTCAAAAATAACAG-GA
* * * *
2793701 TTTGAGTATCCCCGATTATGAAAAATTGATGTTTTGGAAATAAAACTGAGATTGGAGTATCCC
1 TTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAAC-GGGGTTGGAGTATCCC
2793764 TGAGATGAAG
Statistics
Matches: 116, Mismatches: 19, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
78 7 0.06
79 104 0.90
80 3 0.03
81 2 0.02
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (78 bp):
TTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAACGGGGTTGGAGTATCCCCTC
AAAAATAACAGGA
Found at i:2796132 original size:13 final size:13
Alignment explanation
Indices: 2796114--2796143 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
2796104 GTAAATCCAG
2796114 AATGTATCGATAC
1 AATGTATCGATAC
*
2796127 AATGTATCGATAG
1 AATGTATCGATAC
2796140 AATG
1 AATG
2796144 AGCAACGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:2796181 original size:33 final size:33
Alignment explanation
Indices: 2796119--2796196 Score: 93
Period size: 33 Copynumber: 2.4 Consensus size: 33
2796109 TCCAGAATGT
* **
2796119 ATCGATACAATGTATCGATAGAATGAGCAACGA
1 ATCGATACAATGTATCGATACAACAAGCAACGA
* * *
2796152 ATCGATATAATGTATCGATACAACAAGCAATGT
1 ATCGATACAATGTATCGATACAACAAGCAACGA
*
2796185 ATCAATACAATG
1 ATCGATACAATG
2796197 CAAAATGTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.44, C:0.15, G:0.17, T:0.24
Consensus pattern (33 bp):
ATCGATACAATGTATCGATACAACAAGCAACGA
Found at i:2796185 original size:20 final size:19
Alignment explanation
Indices: 2796160--2796213 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 19
2796150 GAATCGATAT
2796160 AATGTATCGATACAA-CAA
1 AATGTATCGATACAAGCAA
*
2796178 GCAATGTATCAATACAATGCAA
1 --AATGTATCGATACAA-GCAA
2796200 AATGTATCGATACA
1 AATGTATCGATACA
2796214 TCTAGGGTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 27 0.90
22 3 0.10
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.24
Consensus pattern (19 bp):
AATGTATCGATACAAGCAA
Found at i:2797109 original size:45 final size:43
Alignment explanation
Indices: 2796963--2797114 Score: 184
Period size: 42 Copynumber: 3.5 Consensus size: 43
2796953 CTTGCTTTCC
* *
2796963 GAGGACAAAGGAAAAAAGGAAAACGAAATGCGTCCTGCTCTTT
1 GAGGACAAAAGAAAAAAGGAAAATGAAATGCGTCCTGCTCTTT
*
2797006 GAGGACAAAAG-AAAAAGGAAAAT-AAAGTGCGCCCTGCTCTTT
1 GAGGACAAAAGAAAAAAGGAAAATGAAA-TGCGTCCTGCTCTTT
*
2797048 GAGGACAAAAAGGAAAAGAAGG-AAATGAAATGTGTCCTGCTCTTT
1 GAGGAC-AAAA-GAAAA-AAGGAAAATGAAATGCGTCCTGCTCTTT
* * *
2797093 GAGGATAAATGAGAAAAGGAAA
1 GAGGACAAAAGAAAAAAGGAAA
2797115 GGTATCCTGC
Statistics
Matches: 94, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
41 3 0.03
42 35 0.37
43 20 0.21
44 4 0.04
45 25 0.27
46 7 0.07
ACGTcount: A:0.45, C:0.12, G:0.26, T:0.16
Consensus pattern (43 bp):
GAGGACAAAAGAAAAAAGGAAAATGAAATGCGTCCTGCTCTTT
Found at i:2797415 original size:60 final size:60
Alignment explanation
Indices: 2797107--2797683 Score: 549
Period size: 60 Copynumber: 9.6 Consensus size: 60
2797097 ATAAATGAGA
* * * * * * *
2797107 AAAGG-AAAGGTATCCTGCTCTTCGAAGACTAAAAAGTGCCACCAACTCGTGTAGGCTTTG
1 AAAGGAAAAGGCATCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTG
* * * * * * *
2797167 AAAAGAAAAGGCATCCTGCTTTTTAAGGACTAAAAGGTGCCACCACCTCGTGTGGACTTTG
1 AAAGGAAAAGGCATCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTG
* * *
2797228 AGAAGAAAAAGGCATCCTACTCTTTGAGGACTAAGAGGTGCCACCAACTTGTGTGGGCTTTG
1 A-AAGGAAAAGGCATCCTGCTCTTTGAGGACTGA-AGGTGCCACCAACTTGTGTGGGCTTTG
* * * * * * *
2797290 AAAAGAAAAAG-ATGTCTTGTTATTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTATG
1 AAAGGAAAAGGCA--TCCTGCTCTTTGAGGACT-G-AAGGTGCCACCAACTTGTGTGGGCTTTG
* * * *
2797353 AAAGGAGAGGGCATCCTGCTCTTTGAGGATTGAAGGTGCCACCAGCTTGTGTGGGCTTTG
1 AAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTG
** * * * *
2797413 AAAGGCGAAGCCATCCTACTGTTTGAGGACTGAAGGTGCCACCAACTTGTATGGGCTTTG
1 AAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTG
** * *
2797473 AAAGGCGAAGGCGTCCTGCTCTTTGAGGACTGGAGGTGCCACCAACTTGTGTGGGCTTTG
1 AAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTG
* ** * * *
2797533 ACAGGCGAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTATGTGGCCTTT-
1 AAAGGAAAAGGCATCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTG
* * ** *
2797593 ----G-AAAGGCGTCCTGCTCTTTAAGGACTAGAAAACTGCCACCAACTTGTGTGGGCTTTA
1 AAAGGAAAAGGCATCCTGCTCTTTGAGGACT-G-AAGGTGCCACCAACTTGTGTGGGCTTTG
*
2797650 AAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAA
1 AAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAA
2797684 AATTGAAAGG
Statistics
Matches: 435, Mismatches: 66, Indels: 32
0.82 0.12 0.06
Matches are distributed among these distances:
55 22 0.05
56 27 0.06
60 168 0.39
61 82 0.19
62 102 0.23
63 32 0.07
64 2 0.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (60 bp):
AAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTG
Found at i:2810780 original size:51 final size:51
Alignment explanation
Indices: 2810683--2810802 Score: 134
Period size: 51 Copynumber: 2.4 Consensus size: 51
2810673 GAGATAACAA
* * **
2810683 CAGGGTTAGAGTATCCCCGATTATGAAAAATCGGTGTTCTGGAAATAAAAC
1 CAGGGTTAGAGTATCCCCGATTATGAAAAATCGATATTCTAAAAATAAAAC
* * * * *
2810734 CGGGGTTGGAGTATCCCTGATTAT-AGAAAATCGATATTTTAAAAATAAAAT
1 CAGGGTTAGAGTATCCCCGATTATGA-AAAATCGATATTCTAAAAATAAAAC
*
2810785 CAGAGTTAGAGTATCCCC
1 CAGGGTTAGAGTATCCCC
2810803 TCGAAAATAA
Statistics
Matches: 55, Mismatches: 13, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
50 1 0.02
51 54 0.98
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.28
Consensus pattern (51 bp):
CAGGGTTAGAGTATCCCCGATTATGAAAAATCGATATTCTAAAAATAAAAC
Found at i:2810885 original size:51 final size:50
Alignment explanation
Indices: 2810818--2810931 Score: 138
Period size: 51 Copynumber: 2.2 Consensus size: 50
2810808 AATAACGGGG
* * *
2810818 TTGGAGTATTCCCGATTGTGAAAAATCGATGCTTTAGAAATAAGGCTGGGA
1 TTGGAGTA-TCCCGATTGTGAAAAATCAATACTTTAGAAATAAAGCTGGGA
* * * * *
2810869 TTGGAGTATCCTCGATTGTGAGAAATCAATATTTTGGAAATAAAGTTGGGG
1 TTGGAGTATCC-CGATTGTGAAAAATCAATACTTTAGAAATAAAGCTGGGA
2810920 TTGGAGTATCCC
1 TTGGAGTATCCC
2810932 CTTGAAAATA
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
50 4 0.07
51 50 0.93
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.32
Consensus pattern (50 bp):
TTGGAGTATCCCGATTGTGAAAAATCAATACTTTAGAAATAAAGCTGGGA
Found at i:2810927 original size:130 final size:130
Alignment explanation
Indices: 2810685--2810941 Score: 295
Period size: 130 Copynumber: 2.0 Consensus size: 130
2810675 GATAACAACA
* * *
2810685 GGGTTAGAGTATCCCCGATTATGAAAAATCGGTGTTCTGGAAATAAAACCGGGGTTGGAGTATCC
1 GGGTTAGAGTATCCCCGATTATGAAAAATCGATGTTCTAGAAATAAAACCGGGATTGGAGTATCC
*
2810750 CTGATTATAGAAAATCGATATTTTAAAAATAAAATCAGAGTTAGAGTATCCCCTCGAAAATAACG
66 CTGATTATAGAAAATCAATATTTTAAAAATAAAATCAGAGTTAGAGTATCCCCTCGAAAATAACG
* * * ** *
2810815 GGGTTGGAGTATTCCCGATTGTGAAAAATCGATGCTT-TAGAAATAAGGCTGGGATTGGAGTAT-
1 GGGTTAGAGTATCCCCGATTATGAAAAATCGATG-TTCTAGAAATAAAACCGGGATTGGAGTATC
* ** * ** * * *
2810878 CCTCGATTGT-GAGAAATCAATATTTTGGAAATAAAGTTGGGGTTGGAGTATCCCCTTGAAAATA
65 CCT-GATTATAGA-AAATCAATATTTTAAAAATAAAATCAGAGTTAGAGTATCCCCTCGAAAATA
2810942 GCAGGATTGG
Statistics
Matches: 105, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
129 5 0.05
130 98 0.93
131 2 0.02
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.29
Consensus pattern (130 bp):
GGGTTAGAGTATCCCCGATTATGAAAAATCGATGTTCTAGAAATAAAACCGGGATTGGAGTATCC
CTGATTATAGAAAATCAATATTTTAAAAATAAAATCAGAGTTAGAGTATCCCCTCGAAAATAACG
Found at i:2810968 original size:28 final size:28
Alignment explanation
Indices: 2810937--2810991 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
2810927 ATCCCCTTGA
*
2810937 AAATAGCAGGATTGGAATATCCTCGATG
1 AAATAACAGGATTGGAATATCCTCGATG
* * *
2810965 AAATAACGGGGTTGGAGTATCCTCGAT
1 AAATAACAGGATTGGAATATCCTCGAT
2810992 TGTGAAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.25
Consensus pattern (28 bp):
AAATAACAGGATTGGAATATCCTCGATG
Found at i:2811043 original size:51 final size:51
Alignment explanation
Indices: 2810979--2811090 Score: 179
Period size: 51 Copynumber: 2.2 Consensus size: 51
2810969 AACGGGGTTG
* *
2810979 GAGTATCCTCGATTGTGAAAAATTGGTGTTTTAAAAATAAAATCAGAGTTA
1 GAGTATCCCCGATTGTGAAAAATTGGTGTTTGAAAAATAAAATCAGAGTTA
* * *
2811030 GAGTATCCCCGATTGTGAAAAATTGGTGTTTGAAAAGTAAAATCGGGGTTA
1 GAGTATCCCCGATTGTGAAAAATTGGTGTTTGAAAAATAAAATCAGAGTTA
2811081 GAGTATCCCC
1 GAGTATCCCC
2811091 TCAGAAATGA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (51 bp):
GAGTATCCCCGATTGTGAAAAATTGGTGTTTGAAAAATAAAATCAGAGTTA
Found at i:2811085 original size:158 final size:158
Alignment explanation
Indices: 2810807--2811091 Score: 351
Period size: 158 Copynumber: 1.8 Consensus size: 158
2810797 ATCCCCTCGA
* * * * *
2810807 AAATAACGGGGTTGGAGTATTCCCGATTGTGAAAAATCGATGCTTTAGAAATAAGGCTGGGATTG
1 AAATAACGGGGTTGGAGTATTCCCGATTGTGAAAAATCGATGCTTTAAAAATAAAGCAGAGATTA
* * * * * * *
2810872 GAGTATCCTCGATTGTGAGAAATCAATATTTTGGAAATAAAGTTGGGGTTGGAGTATCCCCTTGA
66 GAGTATCCCCGATTGTGAAAAATCAATAGTTTGAAAATAAAATCGGGGTTAGAGTATCCCCTTGA
2810937 AAATAGCAGGATTGGAATATCCTCGATG
131 AAATAGCAGGATTGGAATATCCTCGATG
* * * *
2810965 AAATAACGGGGTTGGAGTA-TCCTCGATTGTGAAAAATTGGTGTTTTAAAAATAAAATCAGAG-T
1 AAATAACGGGGTTGGAGTATTCC-CGATTGTGAAAAATCGATGCTTTAAAAAT-AAAGCAGAGAT
***
2811028 TAGAGTATCCCCGATTGTGAAAAATTGGT-GTTTGAAAAGTAAAATCGGGGTTAGAGTATCCCCT
64 TAGAGTATCCCCGATTGTGAAAAATCAATAGTTTGAAAA-TAAAATCGGGGTTAGAGTATCCCCT
2811092 CAGAAATGAC
Statistics
Matches: 105, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
157 10 0.10
158 90 0.86
159 5 0.05
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (158 bp):
AAATAACGGGGTTGGAGTATTCCCGATTGTGAAAAATCGATGCTTTAAAAATAAAGCAGAGATTA
GAGTATCCCCGATTGTGAAAAATCAATAGTTTGAAAATAAAATCGGGGTTAGAGTATCCCCTTGA
AAATAGCAGGATTGGAATATCCTCGATG
Found at i:2811164 original size:79 final size:78
Alignment explanation
Indices: 2811030--2811248 Score: 289
Period size: 79 Copynumber: 2.8 Consensus size: 78
2811020 ATCAGAGTTA
* * *
2811030 GAGTATCCCCGATTGTGAAAAATTGGTGTTTGAAAAGTAAAATCGGGGTTAGAGTATCCCCTCAG
1 GAGTATCCCCGATTGTGAAAAATTGGTGTTTTAAAA-TAAAATCAGGGTTGGAGTATCCCCTCAG
*
2811095 AAATGACGAGG-TTG
65 AAATAACG-GGATTG
* *
2811109 GAGTATCCCCAATTGTGAAAAACTGGTGTTTTAAGAATAAAATCAGGGTTGGAGTATCCCCTCAG
1 GAGTATCCCCGATTGTGAAAAATTGGTGTTTTAA-AATAAAATCAGGGTTGGAGTATCCCCTCAG
*
2811174 AAATAACGGGATTT
65 AAATAACGGGATTG
* * *
2811188 GAGTATCCCCGATTATGAAAAATTGATGTTTTGAAAATAAAA-CCGAGGTTGGAGTATCCCC
1 GAGTATCCCCGATTGTGAAAAATTGGTGTTTT-AAAATAAAATCAG-GGTTGGAGTATCCCC
2811249 GAGATGATGA
Statistics
Matches: 124, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
78 4 0.03
79 116 0.94
80 4 0.03
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.27
Consensus pattern (78 bp):
GAGTATCCCCGATTGTGAAAAATTGGTGTTTTAAAATAAAATCAGGGTTGGAGTATCCCCTCAGA
AATAACGGGATTG
Found at i:2813620 original size:13 final size:13
Alignment explanation
Indices: 2813602--2813626 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2813592 GTAAATCCAG
2813602 AATGTATCGATAT
1 AATGTATCGATAT
2813615 AATGTATCGATA
1 AATGTATCGATA
2813627 CAATAAGCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
AATGTATCGATAT
Found at i:2813648 original size:33 final size:33
Alignment explanation
Indices: 2813602--2813683 Score: 130
Period size: 33 Copynumber: 2.5 Consensus size: 33
2813592 GTAAATCCAG
*
2813602 AATGTATCGATATAATGTATCGATACAATAAGC
1 AATGTATCGATATAATGTATCGATACAACAAGC
*
2813635 AATGTATCAATATAATGTATCGATACAACAAGC
1 AATGTATCGATATAATGTATCGATACAACAAGC
*
2813668 AA-GTATCGATACAATG
1 AATGTATCGATATAATG
2813684 CAAAATGTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
32 12 0.27
33 33 0.73
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.28
Consensus pattern (33 bp):
AATGTATCGATATAATGTATCGATACAACAAGC
Found at i:2813763 original size:13 final size:13
Alignment explanation
Indices: 2813716--2813744 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
2813706 GTAAACTCAG
2813716 AATGTATCGATAC
1 AATGTATCGATAC
2813729 AATGTATCGATAC
1 AATGTATCGATAC
2813742 AAT
1 AAT
2813745 AAACAACGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:2818471 original size:20 final size:19
Alignment explanation
Indices: 2818445--2818500 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
2818435 CTGCCAATTT
*
2818445 CATGTATCGATATAATTGAG
1 CATGTATCGATACAA-TGAG
*
2818465 TATGTATCGATACAATGAG
1 CATGTATCGATACAATGAG
*
2818484 CATCTATCGATACAATG
1 CATGTATCGATACAATG
2818501 TATCGATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 19 0.59
20 13 0.41
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAG
Found at i:2824126 original size:14 final size:14
Alignment explanation
Indices: 2824104--2824134 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
2824094 CATGATAACT
2824104 TTTTATTCATTGTG
1 TTTTATTCATTGTG
*
2824118 TTTTGTTCATTGTG
1 TTTTATTCATTGTG
2824132 TTT
1 TTT
2824135 GTGGGGATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.06, G:0.16, T:0.68
Consensus pattern (14 bp):
TTTTATTCATTGTG
Found at i:2827746 original size:21 final size:22
Alignment explanation
Indices: 2827720--2827765 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
2827710 TAATATGCTT
2827720 ACCTAATA-CATCACCTAACAC
1 ACCTAATAGCATCACCTAACAC
*
2827741 ACCTAATATGCTTCACCTAACAC
1 ACCTAATA-GCATCACCTAACAC
2827764 AC
1 AC
2827766 TACTTAACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.36
23 14 0.64
ACGTcount: A:0.39, C:0.37, G:0.02, T:0.22
Consensus pattern (22 bp):
ACCTAATAGCATCACCTAACAC
Found at i:2827800 original size:34 final size:34
Alignment explanation
Indices: 2827681--2827800 Score: 143
Period size: 34 Copynumber: 3.5 Consensus size: 34
2827671 TAAAATATCT
* *
2827681 TGCTCACCTAACATAATACTTAACACACCTAATA
1 TGCTCACCTAACACACTACTTAACACACCTAATA
* * *
2827715 TGCTTACCTAATACA-TCACCTAACACACCTAATA
1 TGCTCACCTAACACACT-ACTTAACACACCTAATA
*
2827749 TGCTTCACCTAACACACTACTTAACATACCTAATA
1 TGC-TCACCTAACACACTACTTAACACACCTAATA
* *
2827784 TACTCACCTAATACACT
1 TGCTCACCTAACACACT
2827801 TAATATATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
33 1 0.01
34 44 0.60
35 27 0.37
36 1 0.01
ACGTcount: A:0.38, C:0.32, G:0.03, T:0.28
Consensus pattern (34 bp):
TGCTCACCTAACACACTACTTAACACACCTAATA
Found at i:2827804 original size:22 final size:22
Alignment explanation
Indices: 2827770--2827847 Score: 93
Period size: 22 Copynumber: 3.5 Consensus size: 22
2827760 ACACACTACT
* * * *
2827770 TAACATACCTAATATACTCACC
1 TAACACACTTAATATATTTACC
*
2827792 TAATACACTTAATATATTTACC
1 TAACACACTTAATATATTTACC
* *
2827814 TAACACACCTAATATGTTTACC
1 TAACACACTTAATATATTTACC
2827836 TAACACACTTAA
1 TAACACACTTAA
2827848 CAAAGAAATT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 47 1.00
ACGTcount: A:0.41, C:0.26, G:0.01, T:0.32
Consensus pattern (22 bp):
TAACACACTTAATATATTTACC
Found at i:2827836 original size:57 final size:57
Alignment explanation
Indices: 2827701--2827838 Score: 156
Period size: 57 Copynumber: 2.4 Consensus size: 57
2827691 ACATAATACT
*
2827701 TAACACACCTAATATGCTTACCTAATACATCACCTAACACACCTAATATGCTTCACC
1 TAACACACCTAATATGCTTACCTAATACATCACCTAACACACCTAATATGATTCACC
* * * * * * *
2827758 TAACACA-CTACT-TAACATACCTAATATACTCACCTAATACACTTAATAT-ATTTACC
1 TAACACACCTAATAT-GCTTACCTAATACA-TCACCTAACACACCTAATATGATTCACC
*
2827814 TAACACACCTAATATGTTTACCTAA
1 TAACACACCTAATATGCTTACCTAA
2827839 CACACTTAAC
Statistics
Matches: 65, Mismatches: 12, Indels: 8
0.76 0.14 0.09
Matches are distributed among these distances:
55 1 0.02
56 27 0.42
57 36 0.55
58 1 0.02
ACGTcount: A:0.39, C:0.29, G:0.02, T:0.30
Consensus pattern (57 bp):
TAACACACCTAATATGCTTACCTAATACATCACCTAACACACCTAATATGATTCACC
Found at i:2831088 original size:12 final size:12
Alignment explanation
Indices: 2831071--2831095 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2831061 AATATCTTGC
2831071 TTACCTAACACA
1 TTACCTAACACA
2831083 TTACCTAACACA
1 TTACCTAACACA
2831095 T
1 T
2831096 CTAATATGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.32, G:0.00, T:0.28
Consensus pattern (12 bp):
TTACCTAACACA
Found at i:2831111 original size:34 final size:34
Alignment explanation
Indices: 2831068--2831149 Score: 119
Period size: 34 Copynumber: 2.4 Consensus size: 34
2831058 TAAAATATCT
* * *
2831068 TGCTTACCTAACACATTACCTAACACATCTAATA
1 TGCTCACCTAACACATCACCTAACACACCTAATA
2831102 TGCTCACCTAACACATCACCTAACACACCTAATA
1 TGCTCACCTAACACATCACCTAACACACCTAATA
* *
2831136 TACTCATCTAACAC
1 TGCTCACCTAACAC
2831150 GCCTAATATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.38, C:0.34, G:0.02, T:0.26
Consensus pattern (34 bp):
TGCTCACCTAACACATCACCTAACACACCTAATA
Found at i:2831149 original size:22 final size:22
Alignment explanation
Indices: 2831117--2831173 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
2831107 ACCTAACACA
2831117 TCACCTAACACACCTAATATAC
1 TCACCTAACACACCTAATATAC
* * *
2831139 TCATCTAACACGCCTAATATAT
1 TCACCTAACACACCTAATATAC
*
2831161 TTACCTAACACAC
1 TCACCTAACACAC
2831174 TTAACAAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.39, C:0.33, G:0.02, T:0.26
Consensus pattern (22 bp):
TCACCTAACACACCTAATATAC
Found at i:2834836 original size:11 final size:11
Alignment explanation
Indices: 2834815--2834876 Score: 53
Period size: 11 Copynumber: 5.9 Consensus size: 11
2834805 TAAATTTAAA
2834815 TATATTTATATT
1 TATA-TTATATT
*
2834827 TATGTTATATT
1 TATATTATATT
2834838 TATATTA-ATT
1 TATATTATATT
*
2834848 T-TTTTATCATT
1 TATATTAT-ATT
2834859 T-T-TTAT-TT
1 TATATTATATT
2834867 TATATTATAT
1 TATATTATAT
2834877 ATTTTAAATA
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
8 3 0.07
9 5 0.12
10 12 0.29
11 19 0.45
12 3 0.07
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (11 bp):
TATATTATATT
Found at i:2834881 original size:29 final size:31
Alignment explanation
Indices: 2834814--2834882 Score: 76
Period size: 29 Copynumber: 2.3 Consensus size: 31
2834804 ATAAATTTAA
2834814 ATATA-TTTATATTTATGTTATATTTATATT
1 ATATATTTTATATTTATGTTATATTTATATT
*
2834844 A-ATTTTTTTATCATTT-T-TTAT-TTTATATT
1 ATA-TATTTTAT-ATTTATGTTATATTTATATT
2834873 ATATATTTTA
1 ATATATTTTA
2834883 AATAATTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
29 16 0.48
30 7 0.21
31 6 0.18
32 4 0.12
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.67
Consensus pattern (31 bp):
ATATATTTTATATTTATGTTATATTTATATT
Found at i:2834894 original size:31 final size:30
Alignment explanation
Indices: 2834831--2834896 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 30
2834821 TATATTTATG
** *
2834831 TTATATTTATATTAATTTTTTTATCATTTT
1 TTATATTTATATTAATTTTTAAATAATTTT
2834861 TTAT-TTTATATTATATATTTTAAATAATTTT
1 TTATATTTATATTA-AT-TTTTAAATAATTTT
2834892 TTATA
1 TTATA
2834897 ACGTATTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.30
30 6 0.20
31 15 0.50
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (30 bp):
TTATATTTATATTAATTTTTAAATAATTTT
Found at i:2836876 original size:22 final size:23
Alignment explanation
Indices: 2836851--2836901 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
2836841 GTTAAATATC
*
2836851 ATTTATATATAA-ATATATA-ATT
1 ATTTATATATAATA-ATATACATA
*
2836873 ATTTTTATATAATAATATACATA
1 ATTTATATATAATAATATACATA
2836896 ATTTAT
1 ATTTAT
2836902 TTTTAAATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 16 0.67
23 8 0.33
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (23 bp):
ATTTATATATAATAATATACATA
Found at i:2836883 original size:26 final size:27
Alignment explanation
Indices: 2836852--2836906 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
2836842 TTAAATATCA
*
2836852 TTTATAT-ATAA-ATATATAA-TTATT
1 TTTATATAATAATATACATAATTTATT
2836876 TTTATATAATAATATACATAATTTATT
1 TTTATATAATAATATACATAATTTATT
2836903 TTTA
1 TTTA
2836907 AATTCTAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 7 0.26
25 4 0.15
26 7 0.26
27 9 0.33
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (27 bp):
TTTATATAATAATATACATAATTTATT
Found at i:2836889 original size:24 final size:26
Alignment explanation
Indices: 2836852--2836906 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
2836842 TTAAATATCA
2836852 TTTATATATAAATAT-ATAA-TTATT
1 TTTATATATAAATATAATAATTTATT
2836876 TTTATATA-ATAATATACATAATTTATT
1 TTTATATATA-AATATA-ATAATTTATT
2836903 TTTA
1 TTTA
2836907 AATTCTAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
23 1 0.04
24 13 0.48
26 4 0.15
27 9 0.33
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (26 bp):
TTTATATATAAATATAATAATTTATT
Found at i:2837438 original size:2 final size:2
Alignment explanation
Indices: 2837431--2837474 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
2837421 ATGTATTGTC
2837431 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2837473 TA
1 TA
2837475 AGTACTTCAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2837582 original size:2 final size:2
Alignment explanation
Indices: 2837575--2837603 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2837565 AATAATTTCT
2837575 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2837604 TTATTTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Done.