Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold66
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4623749
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 850 characters in sequence are not A, C, G, or T
File 18 of 26
Found at i:3021008 original size:18 final size:19
Alignment explanation
Indices: 3020973--3021008 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
3020963 TAATTAAATA
*
3020973 ATTTAATATATTTTGTATT
1 ATTTAATATATATTGTATT
3020992 ATTTAAT-TATATTGTAT
1 ATTTAATATATATTGTAT
3021009 AAGTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (19 bp):
ATTTAATATATATTGTATT
Found at i:3024486 original size:21 final size:22
Alignment explanation
Indices: 3024460--3024519 Score: 90
Period size: 21 Copynumber: 2.8 Consensus size: 22
3024450 TCTTGCCAAC
3024460 AAAATGTATCAATACATT-CAT
1 AAAATGTATCAATACATTACAT
3024481 AAAATGTATCAATACATGTACAT
1 AAAATGTATCAATACAT-TACAT
3024504 --AATGTATCAATACATT
1 AAAATGTATCAATACATT
3024520 TTCACTTGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
20 1 0.03
21 32 0.86
22 1 0.03
23 3 0.08
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (22 bp):
AAAATGTATCAATACATTACAT
Found at i:3025659 original size:10 final size:10
Alignment explanation
Indices: 3025609--3025685 Score: 50
Period size: 10 Copynumber: 7.7 Consensus size: 10
3025599 GATTTAAAAT
*
3025609 TTTATTTAAG
1 TTTATTTAAA
*
3025619 TTTATTTATA
1 TTTATTTAAA
*
3025629 TTTATAAATAAA
1 TTTAT--TTAAA
3025641 -TTA-TTAAA
1 TTTATTTAAA
3025649 TTTATTTAAA
1 TTTATTTAAA
* * *
3025659 TTTAATCATA
1 TTTATTTAAA
*
3025669 TTTTTTTAAA
1 TTTATTTAAA
*
3025679 TATATTT
1 TTTATTT
3025686 TTTAAATTTA
Statistics
Matches: 49, Mismatches: 14, Indels: 8
0.69 0.20 0.11
Matches are distributed among these distances:
8 4 0.08
9 3 0.06
10 36 0.73
11 3 0.06
12 3 0.06
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (10 bp):
TTTATTTAAA
Found at i:3025688 original size:13 final size:13
Alignment explanation
Indices: 3025666--3025703 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
3025656 AAATTTAATC
3025666 ATAT-TTTTTTAA
1 ATATATTTTTTAA
3025678 ATATATTTTTTAA
1 ATATATTTTTTAA
* *
3025691 ATTTAATTTTTAA
1 ATATATTTTTTAA
3025704 TAATTTAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 4 0.17
13 19 0.83
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
ATATATTTTTTAA
Found at i:3025795 original size:18 final size:17
Alignment explanation
Indices: 3025772--3025825 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 17
3025762 ATGTTAAAAT
*
3025772 TATATTATTATTATTATA
1 TATATTATTA-TATAATA
3025790 TATATTTATTATATAATA
1 TATA-TTATTATATAATA
*
3025808 TA-A--ATTACATAATA
1 TATATTATTATATAATA
3025822 TATA
1 TATA
3025826 AATATAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
14 12 0.38
15 1 0.03
17 1 0.03
18 12 0.38
19 6 0.19
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
TATATTATTATATAATA
Found at i:3027351 original size:23 final size:24
Alignment explanation
Indices: 3027300--3027352 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
3027290 ATAAATTTAA
3027300 AATTTAAATATAATAAATATAATT
1 AATTTAAATATAATAAATATAATT
* *
3027324 -TTTTAAA-ATAAT-TATATAAATT
1 AATTTAAATATAATAAATAT-AATT
3027346 AATTTAA
1 AATTTAA
3027353 TTTAATTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
21 4 0.17
22 9 0.38
23 11 0.46
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (24 bp):
AATTTAAATATAATAAATATAATT
Found at i:3027354 original size:5 final size:5
Alignment explanation
Indices: 3027344--3027370 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
3027334 ATTATATAAA
3027344 TTAAT TTAAT TTAAT TTAAT TTAAT TT
1 TTAAT TTAAT TTAAT TTAAT TTAAT TT
3027371 TTTTAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (5 bp):
TTAAT
Found at i:3027363 original size:28 final size:28
Alignment explanation
Indices: 3027300--3027368 Score: 72
Period size: 28 Copynumber: 2.5 Consensus size: 28
3027290 ATAAATTTAA
*
3027300 AATTTAAATATAATAAATATAATTTTTT
1 AATTTAATTATAATAAATATAATTTTTT
**
3027328 AAAATAATTAT-ATAAAT-TAATTTAATTT
1 AATTTAATTATAATAAATATAATTT--TTT
3027356 AATTTAATT-TAAT
1 AATTTAATTATAAT
3027369 TTTTTTAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
26 6 0.18
27 7 0.21
28 20 0.61
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (28 bp):
AATTTAATTATAATAAATATAATTTTTT
Found at i:3028886 original size:114 final size:113
Alignment explanation
Indices: 3028683--3028914 Score: 401
Period size: 114 Copynumber: 2.0 Consensus size: 113
3028673 CAAACATCTC
* * *
3028683 CCAATCTCTGGTTTTTGAAAGTTTCTGATTGTAAGAGTTTTGAATTTTTCATTTTGATCATTAGG
1 CCAATCTCTAGTTTTTGAAAGTTTCTAATTGTAAGAGTTTTGAATTTTTCATTTTGATCATTACG
* *
3028748 AGTATTTACTTATAATGATTTCTACTCAACAGGTTGAAGTATTTGAATG
66 AGTATTTACTTATAATGATCTCTACTCAACAGGTTGAAGTA-TTGAACG
*
3028797 CCAATCTCTAGTTTTTGGAAGTTTCTAATTGTAAGAGTTTTGAATTTTTCATTTTGATCATTACG
1 CCAATCTCTAGTTTTTGAAAGTTTCTAATTGTAAGAGTTTTGAATTTTTCATTTTGATCATTACG
3028862 AGTATTTACTTATAATGATCTCTACTCAACAGGTTGAAGTATTGAACG
66 AGTATTTACTTATAATGATCTCTACTCAACAGGTTGAAGTATTGAACG
3028910 CCAAT
1 CCAAT
3028915 ATTGGTACCA
Statistics
Matches: 112, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
113 11 0.10
114 101 0.90
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.43
Consensus pattern (113 bp):
CCAATCTCTAGTTTTTGAAAGTTTCTAATTGTAAGAGTTTTGAATTTTTCATTTTGATCATTACG
AGTATTTACTTATAATGATCTCTACTCAACAGGTTGAAGTATTGAACG
Found at i:3040524 original size:27 final size:26
Alignment explanation
Indices: 3040477--3040529 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
3040467 ATTTTAACAT
* * * *
3040477 ATTTAATAATATTTTATTATATTTAA
1 ATTTAATAATATATAAATATAATTAA
3040503 ATTTATATAATATATAAATATAATTAA
1 ATTTA-ATAATATATAAATATAATTAA
3040530 TCTAATTCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (26 bp):
ATTTAATAATATATAAATATAATTAA
Found at i:3041326 original size:35 final size:35
Alignment explanation
Indices: 3041287--3041360 Score: 139
Period size: 35 Copynumber: 2.1 Consensus size: 35
3041277 TATTAATTAA
3041287 ATTGAGTTTATACTTGTTAATACAACGATTGTTGG
1 ATTGAGTTTATACTTGTTAATACAACGATTGTTGG
*
3041322 ATTGAGTTTATACTTGTTAATACAATGATTGTTGG
1 ATTGAGTTTATACTTGTTAATACAACGATTGTTGG
3041357 ATTG
1 ATTG
3041361 TGTTCATTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.45
Consensus pattern (35 bp):
ATTGAGTTTATACTTGTTAATACAACGATTGTTGG
Found at i:3046355 original size:11 final size:11
Alignment explanation
Indices: 3046341--3046365 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
3046331 CTAGTTCAAG
3046341 TTTAGTAACAT
1 TTTAGTAACAT
3046352 TTTAGTAACAT
1 TTTAGTAACAT
3046363 TTT
1 TTT
3046366 GATGCTTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (11 bp):
TTTAGTAACAT
Found at i:3054855 original size:22 final size:23
Alignment explanation
Indices: 3054829--3054872 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
3054819 CAAAACCAGT
3054829 AAAAATTT-TAATTT-AATTTTTC
1 AAAAATTTAT-ATTTCAATTTTTC
3054851 AAAAATTTATATTTCAATTTTT
1 AAAAATTTATATTTCAATTTTT
3054873 TATCTCTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.55
Consensus pattern (23 bp):
AAAAATTTATATTTCAATTTTTC
Found at i:3057234 original size:19 final size:18
Alignment explanation
Indices: 3057207--3057245 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
3057197 ATAATATTTA
*
3057207 AAATATTAATTATTTTGAT
1 AAATATTAA-TATTTTAAT
*
3057226 AAATTTTAATATTTTAAT
1 AAATATTAATATTTTAAT
3057244 AA
1 AA
3057246 TTAATATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
AAATATTAATATTTTAAT
Found at i:3057718 original size:29 final size:30
Alignment explanation
Indices: 3057663--3057723 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 30
3057653 CAATAATTAT
* *
3057663 TTTTAAAAAATAAAAAATTATTTTTAAAAA
1 TTTTAAAAAATAAAAAATCATTATTAAAAA
* * *
3057693 TTTT-AAAAATAAAAGATCGTTATTAACAA
1 TTTTAAAAAATAAAAAATCATTATTAAAAA
3057722 TT
1 TT
3057724 ATCTCTAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 22 0.85
30 4 0.15
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.39
Consensus pattern (30 bp):
TTTTAAAAAATAAAAAATCATTATTAAAAA
Found at i:3057898 original size:27 final size:29
Alignment explanation
Indices: 3057843--3057904 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 29
3057833 ATTTTGTAAT
* **
3057843 ATAAAATAATTTTTATAAAATTTTAAATA
1 ATAAAATAAATTTTATAAAATAATAAATA
3057872 ATAAAATAAATTTT-T-AAATAATAAATA
1 ATAAAATAAATTTTATAAAATAATAAATA
*
3057899 ACAAAA
1 ATAAAA
3057905 CTTTATTCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 15 0.52
28 1 0.03
29 13 0.45
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (29 bp):
ATAAAATAAATTTTATAAAATAATAAATA
Found at i:3057899 original size:19 final size:20
Alignment explanation
Indices: 3057857--3057896 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
3057847 AATAATTTTT
3057857 ATAAAATTTTAAATAATAAA
1 ATAAAATTTTAAATAATAAA
*
3057877 ATAAATTTTTAAATAATAAA
1 ATAAAATTTTAAATAATAAA
3057897 TAACAAAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
ATAAAATTTTAAATAATAAA
Found at i:3061673 original size:17 final size:18
Alignment explanation
Indices: 3061653--3061695 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
3061643 AAATAGCTCT
*
3061653 AAAAATGAAATTGA-ATA
1 AAAAATGAAATTCATATA
* *
3061670 AAAAATCAAATTCATTTA
1 AAAAATGAAATTCATATA
3061688 AAAAATGA
1 AAAAATGA
3061696 GCTAAGCTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.63, C:0.05, G:0.07, T:0.26
Consensus pattern (18 bp):
AAAAATGAAATTCATATA
Found at i:3062157 original size:8 final size:8
Alignment explanation
Indices: 3062144--3062170 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
3062134 TAAATTATTT
3062144 AAATTTTA
1 AAATTTTA
3062152 AAATTTTA
1 AAATTTTA
3062160 AAATTTTA
1 AAATTTTA
3062168 AAA
1 AAA
3062171 AATTAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (8 bp):
AAATTTTA
Found at i:3062176 original size:16 final size:16
Alignment explanation
Indices: 3062144--3062204 Score: 63
Period size: 16 Copynumber: 3.9 Consensus size: 16
3062134 TAAATTATTT
**
3062144 AAATTTTAAAATTTTA
1 AAATTTTAAAAAATTA
3062160 AAATTTTAAAAAATT-
1 AAATTTTAAAAAATTA
* *
3062175 AAATTAGT-AAAGATTA
1 AAATT-TTAAAAAATTA
3062191 AAATTTTAAAAAAT
1 AAATTTTAAAAAAT
3062205 ATATTAAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
15 12 0.33
16 24 0.67
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
AAATTTTAAAAAATTA
Found at i:3065648 original size:15 final size:14
Alignment explanation
Indices: 3065599--3065649 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 14
3065589 CATATACATA
*
3065599 AAATTTATATTAACA
1 AAATTTATATTAA-T
3065614 AAATTTTAATATTAAT
1 AAA-TTT-ATATTAAT
3065630 -AATTTATATTATAT
1 AAATTTATATTA-AT
3065644 AAATTT
1 AAATTT
3065650 TAAAATATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
13 6 0.19
14 5 0.16
15 10 0.32
16 3 0.10
17 7 0.23
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (14 bp):
AAATTTATATTAAT
Found at i:3067344 original size:22 final size:22
Alignment explanation
Indices: 3067302--3067345 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
3067292 ATCGATACAC
*
3067302 TTAAAAATGCATTGATAAATTT
1 TTAAAAATGCATTAATAAATTT
*
3067324 TTAAAAA-GTATTAATATAATTT
1 TTAAAAATGCATTAATA-AATTT
3067346 AAGGTTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (22 bp):
TTAAAAATGCATTAATAAATTT
Found at i:3067616 original size:3 final size:3
Alignment explanation
Indices: 3067608--3067654 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
3067598 TCAACATTAA
3067608 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
3067655 ATCAAAATTG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:3069196 original size:13 final size:13
Alignment explanation
Indices: 3069180--3069233 Score: 51
Period size: 12 Copynumber: 4.2 Consensus size: 13
3069170 TAATTATTTA
3069180 TTTTATATATAAT
1 TTTTATATATAAT
3069193 TTTTA-ATATAAT
1 TTTTATATATAAT
*
3069205 TATT-TA-ATAAT
1 TTTTATATATAAT
3069216 ATTTTATTATTATAAT
1 -TTTTA-TA-TATAAT
3069232 TT
1 TT
3069234 ACCTTACTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
11 5 0.15
12 14 0.42
13 5 0.15
14 2 0.06
15 2 0.06
16 5 0.15
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TTTTATATATAAT
Found at i:3069211 original size:39 final size:39
Alignment explanation
Indices: 3069158--3069233 Score: 102
Period size: 39 Copynumber: 1.9 Consensus size: 39
3069148 TTTAACATAA
* *
3069158 AATATAATTTTTTAAT--TATTTATTTTATATATAATTTTT
1 AATATAATTATTTAATAATATTT-TATTAT-TATAATTTTT
3069197 AATATAATTATTTAATAATATTTTATTATTATAATTT
1 AATATAATTATTTAATAATATTTTATTATTATAATTT
3069234 ACCTTACTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
39 23 0.70
40 5 0.15
41 5 0.15
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (39 bp):
AATATAATTATTTAATAATATTTTATTATTATAATTTTT
Found at i:3069229 original size:27 final size:27
Alignment explanation
Indices: 3069159--3069232 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 27
3069149 TTAACATAAA
* *
3069159 ATATAATTTTTTAAT-TATTTATTTTAT
1 ATATAA-TTTTTAATATAATTATTTAAT
3069186 ATATAATTTTTAATATAATTATTTAAT
1 ATATAATTTTTAATATAATTATTTAAT
* *
3069213 A-ATATTTTATTATTATAATT
1 ATATAATTT-TTAATATAATT
3069233 TACCTTACTA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 14 0.34
27 27 0.66
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (27 bp):
ATATAATTTTTAATATAATTATTTAAT
Found at i:3069233 original size:24 final size:23
Alignment explanation
Indices: 3069188--3069234 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
3069178 TATTTTATAT
*
3069188 ATAATTTTTAATATAATTATTTA
1 ATAATTTTTAATATAATAATTTA
* *
3069211 ATAATATTTTATTATTATAATTTA
1 ATAAT-TTTTAATATAATAATTTA
3069235 CCTTACTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
ATAATTTTTAATATAATAATTTA
Found at i:3069299 original size:12 final size:12
Alignment explanation
Indices: 3069284--3069310 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
3069274 AATTATTAAT
3069284 TTAATTTTATCA
1 TTAATTTTATCA
3069296 TTAATTTTATCA
1 TTAATTTTATCA
3069308 TTA
1 TTA
3069311 TAATAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.59
Consensus pattern (12 bp):
TTAATTTTATCA
Found at i:3074343 original size:154 final size:153
Alignment explanation
Indices: 3073873--3074479 Score: 491
Period size: 154 Copynumber: 3.9 Consensus size: 153
3073863 TAAGTTAAAA
* * * * *
3073873 AAAAAATTATGAAAATGCTCCTA-GAGGATACTTTCGACATAGAAGTGCCTGATATCCCTAAAGA
1 AAAAAATTATGAAAATGCTCCTAGGA-GATACCTTCGACATAGAAGTACCCGATACCCCTAAAGG
* ** * * * * * *
3073937 ACTAAAAAGGATTGTAGATGGGATGAACCTATCTTAAATACCTATCTTTGCCATAGAAGCAGACT
65 ACTAAAAAGGATTATAGAAAGGATGAACCTATCCTAAATACCTA-CTTCGGCATAAAAGTAGACC
* * * *
3074002 CAGTGACAACTTAGGAGTTAGTTTT
129 CGGTGACAACCTAGGAGTTGGTTCT
** * * * * * * ** * *
3074027 AAAAAATTACAAAAATACCCCCATGAGATACTTTCGACGT-GAAAGTGTCCTATACCCCTTAAGG
1 AAAAAATTATGAAAATGCTCCTAGGAGATACCTTCGACATAG-AAGTACCCGATACCCCTAAAGG
* * * * *
3074091 ACTAAAAAAGGATAATAAAATAGGATGAACCTATCCTAAATACCCACCTTCTGCATTAAAGT-GA
65 ACT-AAAAAGGATTATAGAA-AGGATGAACCTATCCTAAATACCTA-CTTCGGCATAAAAGTAG-
* * ** *
3074155 ACCCGATGACGACCTAAAACTTGGTTCT
126 ACCCGGTGACAACCTAGGAGTTGGTTCT
* *
3074183 AAAAAATTATGAAAATGCACCTAGGAGATACCTTCGACATAGAAGTACCCGATACCCCTAGAGGA
1 AAAAAATTATGAAAATGCTCCTAGGAGATACCTTCGACATAGAAGTACCCGATACCCCTAAAGGA
*
3074248 CATAAAAA-GATTATAGAAAGGATGAACCTATCCTAAATACCTACATTCGGCATAAAAATAGACC
66 C-TAAAAAGGATTATAGAAAGGATGAACCTATCCTAAATACCTAC-TTCGGCATAAAAGTAGACC
*
3074312 CGGTAACAACCTAGGAGTTGGTTCT
129 CGGTGACAACCTAGGAGTTGGTTCT
* ** * * *
3074337 GAAAAATTATGAAAATGCTTTTAAGG-GATAACTTCGACATAGAAGTACTCGATACTCCTAAAGG
1 AAAAAATTATGAAAATGCTCCT-AGGAGATACCTTCGACATAGAAGTACCCGATACCCCTAAAGG
* * * *
3074401 ATTAAAAAAGG--TA-A-AAAAGATAAAACCTATCCTAAATACAC-ACATTTGGCATAGAAACG-
65 ACT-AAAAAGGATTATAGAAAGGAT-GAACCTATCCTAAATAC-CTAC-TTCGGCATA-AAA-GT
*
3074460 A-ACCCGGTGACAACTTAGGA
124 AGACCCGGTGACAACCTAGGA
3074480 CTCGATTCTA
Statistics
Matches: 361, Mismatches: 76, Indels: 34
0.77 0.16 0.07
Matches are distributed among these distances:
151 6 0.02
152 45 0.12
153 10 0.03
154 165 0.46
155 28 0.08
156 105 0.29
157 2 0.01
ACGTcount: A:0.41, C:0.19, G:0.17, T:0.24
Consensus pattern (153 bp):
AAAAAATTATGAAAATGCTCCTAGGAGATACCTTCGACATAGAAGTACCCGATACCCCTAAAGGA
CTAAAAAGGATTATAGAAAGGATGAACCTATCCTAAATACCTACTTCGGCATAAAAGTAGACCCG
GTGACAACCTAGGAGTTGGTTCT
Found at i:3074504 original size:152 final size:154
Alignment explanation
Indices: 3074209--3074504 Score: 329
Period size: 152 Copynumber: 1.9 Consensus size: 154
3074199 GCACCTAGGA
* * * * *
3074209 GATACCTTCGACATAGAAGTACCCGATACCCCTAGAGGACATAAAAAGATTATAGAAAGGATGAA
1 GATAACTTCGACATAGAAGTACCCGATACCCCTAAAGGACATAAAAAGAGTATAGAAAAGATAAA
* * * *
3074274 CCTATCCTAAATACCTACATTCGGCATAAAAATAGACCCGGTAACAACCTAGGAGTTGGTTCTGA
66 CCTATCCTAAATACCTACATTCGGCATAAAAAGAGACCCGGTAACAACCTAGGACTCGATTCTGA
*
3074339 AAAATTATGAAAATGCTTTTAAGG
131 AAAATTATCAAAATGCTTTTAAGG
* * *
3074363 GATAACTTCGACATAGAAGTACTCGATACTCCTAAAGGA-TTAAAAA-AGGTA-A-AAAAGATAA
1 GATAACTTCGACATAGAAGTACCCGATACCCCTAAAGGACATAAAAAGA-GTATAGAAAAGAT-A
* * * *
3074424 AACCTATCCTAAATACAC-ACATTTGGCATAGAAACGA-ACCCGGTGACAACTTAGGACTCGATT
64 AACCTATCCTAAATAC-CTACATTCGGCATA-AAAAGAGACCCGGTAACAACCTAGGACTCGATT
3074487 CT-AATGAAATTA-CAAAAT
127 CTGAA--AAATTATCAAAAT
3074505 TACCCCTAAG
Statistics
Matches: 119, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
151 8 0.07
152 57 0.48
153 19 0.16
154 35 0.29
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.23
Consensus pattern (154 bp):
GATAACTTCGACATAGAAGTACCCGATACCCCTAAAGGACATAAAAAGAGTATAGAAAAGATAAA
CCTATCCTAAATACCTACATTCGGCATAAAAAGAGACCCGGTAACAACCTAGGACTCGATTCTGA
AAAATTATCAAAATGCTTTTAAGG
Found at i:3074767 original size:9 final size:10
Alignment explanation
Indices: 3074742--3074766 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
3074732 ATAGGAATAA
3074742 TAAAAATCTT
1 TAAAAATCTT
3074752 TAAAAATCTT
1 TAAAAATCTT
3074762 TAAAA
1 TAAAA
3074767 TTAAGATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (10 bp):
TAAAAATCTT
Found at i:3076001 original size:12 final size:12
Alignment explanation
Indices: 3075957--3076003 Score: 58
Period size: 12 Copynumber: 3.6 Consensus size: 12
3075947 GAAATTTAGT
3075957 TTTTTTTTCTTAGTG
1 TTTTTTTT-TT-G-G
3075972 TTTTTGTTTTTGG
1 TTTTT-TTTTTGG
3075985 TTTTTTTTTTGG
1 TTTTTTTTTTGG
3075997 TTTTTTT
1 TTTTTTT
3076004 ATTCAATCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
12 14 0.45
13 6 0.19
14 1 0.03
15 7 0.23
16 3 0.10
ACGTcount: A:0.02, C:0.02, G:0.15, T:0.81
Consensus pattern (12 bp):
TTTTTTTTTTGG
Found at i:3076154 original size:25 final size:24
Alignment explanation
Indices: 3076116--3076170 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
3076106 CTTTTTGTCA
*
3076116 TCTTTTTCATTTTTTTATTCCTTTT
1 TCTTTTTCACTTTTTTATT-CTTTT
* * *
3076141 TCTTTTTTACTTTTTTGTTTTTTT
1 TCTTTTTCACTTTTTTATTCTTTT
3076165 TCTTTT
1 TCTTTT
3076171 CATTTAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 10 0.38
25 16 0.62
ACGTcount: A:0.05, C:0.13, G:0.02, T:0.80
Consensus pattern (24 bp):
TCTTTTTCACTTTTTTATTCTTTT
Found at i:3076342 original size:14 final size:15
Alignment explanation
Indices: 3076300--3076351 Score: 52
Period size: 14 Copynumber: 3.3 Consensus size: 15
3076290 TTATATCGTA
3076300 AAAATTAATAAAAATAAT
1 AAAATT-ATAAAAAT--T
* *
3076318 TAAATTATAAAAGTT
1 AAAATTATAAAAATT
3076333 AAAATT-TAAAAATT
1 AAAATTATAAAAATT
3076347 AAAAT
1 AAAAT
3076352 AAAATTTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
14 12 0.40
15 6 0.20
17 7 0.23
18 5 0.17
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (15 bp):
AAAATTATAAAAATT
Found at i:3076464 original size:17 final size:16
Alignment explanation
Indices: 3076439--3076470 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
3076429 CTCTTAAGAT
3076439 TTTTCGAGAAAAATTC
1 TTTTCGAGAAAAATTC
3076455 TTTTCAGAGAAAAATT
1 TTTTC-GAGAAAAATT
3076471 ATTATACGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (16 bp):
TTTTCGAGAAAAATTC
Found at i:3077037 original size:166 final size:164
Alignment explanation
Indices: 3076638--3077038 Score: 388
Period size: 166 Copynumber: 2.4 Consensus size: 164
3076628 AATAGAAAAA
** * * * *
3076638 TTTCGAAGAAA-AAATTTAAAACTCATGAAAATAAATTATTTTTTCAAAATTGATTTAATATGAA
1 TTTCG-AGAAAGAAATCAAAAACTCATGAAGATAAATGAATTTTTCAAAATTGATTT-A-CTGAA
*
3076702 TTAAATAATAATATTTGATGAATTTCAAAAATTAAAAACCAAGAAAAATCCTATCAAAAATATTT
63 TTAAATAATAATATTTGATAAATTTCAAAAATTAAAAACCAAGAAAAATCCTATCAAAAATATTT
* * * *
3076767 ACGGAGTAGAAAACTCTGTATTTTAGAATTAGGGAAG
128 ACGGAGAAGAAAACTCCGTATTTTAAAATAAGGGAAG
* * * *
3076804 TTTCGAGGAAAGAAATGAAAAACTCATGAAGATAAGTGAA-TTTTGAAAACT-AGTTTAACATGA
1 TTTCGA-GAAAGAAATCAAAAACTCATGAAGATAAATGAATTTTTCAAAATTGA-TTT-AC-TGA
* * * * * *
3076867 ATTAAATAATAATATTTGATAAATTTTAAAATTTATAAA-CGAGTAAAAATTCTTTCGAAAAA-A
62 ATTAAATAATAATATTTGATAAATTTCAAAAATTAAAAACCAAG-AAAAATCCTATC-AAAAATA
*
3076930 TTTACGGAGAAGAAAATTCCGTATTTTGAAAATAAGAGGAA-
125 TTTACGGAGAAGAAAACTCCGTATTTT-AAAATAAG-GGAAG
* *
3076971 TTTC-A-AAAGAAAATCAATAACTTATGAA-ATAAAATGAATTTTTCAAAATTGATTTGACTGGA
1 TTTCGAGAAAG-AAATCAAAAACTCATGAAGAT-AAATGAATTTTTCAAAATTGATTT-ACT-GA
3077033 ATTAAA
62 ATTAAA
3077039 AATTAAATGA
Statistics
Matches: 194, Mismatches: 28, Indels: 26
0.78 0.11 0.10
Matches are distributed among these distances:
164 6 0.03
165 27 0.14
166 119 0.61
167 38 0.20
168 4 0.02
ACGTcount: A:0.48, C:0.07, G:0.12, T:0.32
Consensus pattern (164 bp):
TTTCGAGAAAGAAATCAAAAACTCATGAAGATAAATGAATTTTTCAAAATTGATTTACTGAATTA
AATAATAATATTTGATAAATTTCAAAAATTAAAAACCAAGAAAAATCCTATCAAAAATATTTACG
GAGAAGAAAACTCCGTATTTTAAAATAAGGGAAG
Found at i:3078064 original size:25 final size:25
Alignment explanation
Indices: 3078026--3078078 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
3078016 AGCCGATCTG
3078026 TCAACTGCCAGAAACAATTTACCAA
1 TCAACTGCCAGAAACAATTTACCAA
*
3078051 TCAACTGCCTGAAACAATTTACCAA
1 TCAACTGCCAGAAACAATTTACCAA
3078076 TCA
1 TCA
3078079 GCGTATATTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.42, C:0.28, G:0.08, T:0.23
Consensus pattern (25 bp):
TCAACTGCCAGAAACAATTTACCAA
Found at i:3080470 original size:27 final size:26
Alignment explanation
Indices: 3080407--3080470 Score: 85
Period size: 26 Copynumber: 2.4 Consensus size: 26
3080397 ATTTCAAAGT
*
3080407 TTAAAAATATTAATTTTTATATAAAA
1 TTAAAAAAATTAATTTTTATATAAAA
*
3080433 TTAAAATAATTAATTTTTATATTAATAA
1 TTAAAAAAATTAATTTTTATA-TAA-AA
3080461 -TAAAAAAATT
1 TTAAAAAAATT
3080471 TATAAATAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.58
27 12 0.36
28 2 0.06
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (26 bp):
TTAAAAAAATTAATTTTTATATAAAA
Found at i:3080931 original size:19 final size:19
Alignment explanation
Indices: 3080895--3080930 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
3080885 ACAACATTGT
3080895 AATATTTATGAATATTTTA
1 AATATTTATGAATATTTTA
*
3080914 AATA-TTATGATTATTTT
1 AATATTTATGAATATTTT
3080931 TTATGGCAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56
Consensus pattern (19 bp):
AATATTTATGAATATTTTA
Found at i:3081101 original size:14 final size:14
Alignment explanation
Indices: 3081071--3081126 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 14
3081061 TAAAATATTT
**
3081071 ATATTT-AATATCT
1 ATATTTAAATATAA
3081084 ATATTTAAATATAA
1 ATATTTAAATATAA
**
3081098 ATATAAAAATAT-A
1 ATATTTAAATATAA
3081111 ATATTTTAAATATAA
1 ATA-TTTAAATATAA
3081126 A
1 A
3081127 AAAAATTAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
13 10 0.29
14 22 0.65
15 2 0.06
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (14 bp):
ATATTTAAATATAA
Found at i:3082268 original size:16 final size:16
Alignment explanation
Indices: 3082247--3082292 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
3082237 AATTTTTTTT
*
3082247 AATTATTTTAGTTTGA
1 AATTATTTTAATTTGA
* *
3082263 AGTTATTTTAATTTTA
1 AATTATTTTAATTTGA
*
3082279 AATTATTTAAATTT
1 AATTATTTTAATTT
3082293 AATATTAAGT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.59
Consensus pattern (16 bp):
AATTATTTTAATTTGA
Found at i:3082295 original size:21 final size:21
Alignment explanation
Indices: 3082269--3082315 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
3082259 TTGAAGTTAT
* *
3082269 TTTAATTTTAAATTATTTAAA
1 TTTAATATTAAATTAATTAAA
*
3082290 TTTAATATTAAGTTAATTAAA
1 TTTAATATTAAATTAATTAAA
3082311 TTTAA
1 TTTAA
3082316 GTTATTTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (21 bp):
TTTAATATTAAATTAATTAAA
Found at i:3082322 original size:36 final size:35
Alignment explanation
Indices: 3082270--3082340 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 35
3082260 TGAAGTTATT
*
3082270 TTAATTTTAAATTA-TTTAAATTTAATATTAAGTTAA
1 TTAAATTTAAATTATTTTAAATTTAA-ATTAA-TTAA
* *
3082306 TTAAATTTAAGTTATTTTATATTTAAATTAATTAA
1 TTAAATTTAAATTATTTTAAATTTAAATTAATTAA
3082341 ATTTAATATT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
35 4 0.13
36 17 0.55
37 10 0.32
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (35 bp):
TTAAATTTAAATTATTTTAAATTTAAATTAATTAA
Found at i:3082340 original size:31 final size:29
Alignment explanation
Indices: 3082283--3082358 Score: 95
Period size: 31 Copynumber: 2.7 Consensus size: 29
3082273 ATTTTAAATT
* *
3082283 ATTTAA-ATTTAATA-TTAAGTTAATTAA
1 ATTTAATATTTTATATTTAAATTAATTAA
3082310 ATTTAAGTTATTTTATATTTAAATTAATTAA
1 ATTTAA--TATTTTATATTTAAATTAATTAA
3082341 ATTTAATATTTTA-ATTTA
1 ATTTAATATTTTATATTTA
3082359 TCATGTTAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 6 0.14
28 5 0.12
29 7 0.16
30 7 0.16
31 18 0.42
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (29 bp):
ATTTAATATTTTATATTTAAATTAATTAA
Found at i:3082358 original size:5 final size:5
Alignment explanation
Indices: 3082207--3082347 Score: 54
Period size: 5 Copynumber: 27.0 Consensus size: 5
3082197 TTAAGATGGA
* ** *
3082207 TTAAT TTAGA- TTAAA TTAAT TTAAAAT TTAAAT TTTTT TTAA- TTATT
1 TTAAT TTA-AT TTAAT TTAAT TT--AAT TT-AAT TTAAT TTAAT TTAAT
* * * * *
3082254 TTAGT TTGAAG TTATT TTAATT TTAAA TT-AT TTAAAT TTAAT ATTAAG
1 TTAAT TT-AAT TTAAT TTAA-T TTAAT TTAAT TT-AAT TTAAT -TTAAT
* * * * *
3082302 TTAAT TAAAT TTAAG TTATT TTATAT TTAAA TTAAT TAAAT TTAAT
1 TTAAT TTAAT TTAAT TTAAT TTA-AT TTAAT TTAAT TTAAT TTAAT
3082348 ATTTTAATTT
Statistics
Matches: 99, Mismatches: 26, Indels: 22
0.67 0.18 0.15
Matches are distributed among these distances:
4 7 0.07
5 60 0.61
6 27 0.27
7 5 0.05
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.55
Consensus pattern (5 bp):
TTAAT
Found at i:3082373 original size:52 final size:50
Alignment explanation
Indices: 3082265--3082375 Score: 127
Period size: 52 Copynumber: 2.1 Consensus size: 50
3082255 TAGTTTGAAG
* *
3082265 TTATTTTAATTTTAAATTATTTAAATTTAATATTAAGTTAATTAAATTTAAG
1 TTATTTTAATTTTAAATTAATTAAATTTAATATT-A-TTAATTAAATTTAAA
*
3082317 TTATTTT-ATATTTAAATTAATTAAATTTAATATT-TTAATTTATCATGTTAAA
1 TTATTTTAAT-TTTAAATTAATTAAATTTAATATTATTAA-TTA-AAT-TTAAA
3082369 TTATTTT
1 TTATTTT
3082376 TAAACTATTT
Statistics
Matches: 52, Mismatches: 3, Indels: 8
0.83 0.05 0.13
Matches are distributed among these distances:
49 4 0.08
50 3 0.06
51 4 0.08
52 41 0.79
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.57
Consensus pattern (50 bp):
TTATTTTAATTTTAAATTAATTAAATTTAATATTATTAATTAAATTTAAA
Found at i:3082607 original size:11 final size:11
Alignment explanation
Indices: 3082577--3082610 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
3082567 ATTAATATAA
*
3082577 AATAAAAAAAT
1 AATAAAAATAT
*
3082588 AATTAAAATAT
1 AATAAAAATAT
3082599 AATAAAAATAT
1 AATAAAAATAT
3082610 A
1 A
3082611 TTATATAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (11 bp):
AATAAAAATAT
Found at i:3082673 original size:31 final size:33
Alignment explanation
Indices: 3082596--3082704 Score: 125
Period size: 32 Copynumber: 3.3 Consensus size: 33
3082586 ATAATTAAAA
* *
3082596 TATAATAAAA-ATATATTATATAAATATATAAT
1 TATAATAAAATTTATATAATATAAATATATAAT
3082628 TATAATAAAATTTATATAATATAAATAT-TAAT
1 TATAATAAAATTTATATAATATAAATATATAAT
* * *
3082660 T-TATTTAAATTTATATAAATATATAATATATTAAA
1 TATAATAAAATTTATAT-AATATA-AATATA-TAAT
3082695 TATAATAAAA
1 TATAATAAAA
3082705 ATATAGAAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
31 13 0.20
32 21 0.33
33 20 0.31
35 4 0.06
36 6 0.09
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (33 bp):
TATAATAAAATTTATATAATATAAATATATAAT
Found at i:3082709 original size:33 final size:32
Alignment explanation
Indices: 3082560--3082718 Score: 99
Period size: 35 Copynumber: 4.7 Consensus size: 32
3082550 TAATATAATT
** * *
3082560 ATATAATATTAATATAAAATAAAAAAATAATTAAA
1 ATATAATAAAAATAT-AAATATATAAAT-ATT-AA
*
3082595 ATATAATAAAAATAT-ATTATATAAATATATAA
1 ATATAATAAAAATATAAATATATAAATAT-TAA
* * *
3082627 TTATAAT-AAAATTTATATAATATAAATATT-A
1 ATATAATAAAAATATAAAT-ATATAAATATTAA
* * *
3082658 ATTTATTTAAATTTATATAAATATATAATATATTAA
1 ATATA-ATAAA--AATATAAATATATAA-ATATTAA
3082694 ATATAATAAAAATATAGAAATATAT
1 ATATAATAAAAATAT--AAATATAT
3082719 GGGCATATGA
Statistics
Matches: 95, Mismatches: 18, Indels: 22
0.70 0.13 0.16
Matches are distributed among these distances:
31 10 0.11
32 13 0.14
33 25 0.26
34 6 0.06
35 36 0.38
36 5 0.05
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.40
Consensus pattern (32 bp):
ATATAATAAAAATATAAATATATAAATATTAA
Found at i:3082715 original size:35 final size:35
Alignment explanation
Indices: 3082585--3082718 Score: 113
Period size: 35 Copynumber: 4.0 Consensus size: 35
3082575 AAAATAAAAA
*
3082585 AATA-ATTAAAATATAATAAAAATATAT-TATATA-
1 AATATATT-AAATATAATAAAAATATATAAATATAT
* * *
3082618 AATATA-TAATTATAAT-AAAATTTATATA-ATAT
1 AATATATTAAATATAATAAAAATATATAAATATAT
* * **
3082650 AA-ATATT-AATTTATTTAAATTTATATAAATATAT
1 AATATATTAAATATA-ATAAAAATATATAAATATAT
*
3082684 AATATATTAAATATAATAAAAATATAGAAATATAT
1 AATATATTAAATATAATAAAAATATATAAATATAT
3082719 GGGCATATGA
Statistics
Matches: 78, Mismatches: 14, Indels: 16
0.72 0.13 0.15
Matches are distributed among these distances:
31 18 0.23
32 14 0.18
33 13 0.17
34 7 0.09
35 21 0.27
36 5 0.06
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (35 bp):
AATATATTAAATATAATAAAAATATATAAATATAT
Found at i:3082834 original size:3 final size:3
Alignment explanation
Indices: 3082826--3082852 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
3082816 GTGTTTGTTA
3082826 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
3082853 TATTATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:3083411 original size:31 final size:31
Alignment explanation
Indices: 3083376--3083436 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
3083366 TATTAAAAAT
**
3083376 ATTAAATTAAAATGGTTATATATAATAGAGC
1 ATTAAATTAAAATGACTATATATAATAGAGC
3083407 ATTAAATTAAAATGACTATATATAATAGAG
1 ATTAAATTAAAATGACTATATATAATAGAG
3083437 GTATCTATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.51, C:0.03, G:0.11, T:0.34
Consensus pattern (31 bp):
ATTAAATTAAAATGACTATATATAATAGAGC
Found at i:3083610 original size:21 final size:21
Alignment explanation
Indices: 3083581--3083630 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
3083571 TTATATATTT
3083581 TATAGTTATATTTAA-ATAAAAA
1 TATA-TTAT-TTTAATATAAAAA
*
3083603 TATATTATTTTAATTTAAAAA
1 TATATTATTTTAATATAAAAA
3083624 TACTATT
1 TA-TATT
3083631 TCTAGTCATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 5 0.20
21 12 0.48
22 8 0.32
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (21 bp):
TATATTATTTTAATATAAAAA
Found at i:3087983 original size:27 final size:27
Alignment explanation
Indices: 3087946--3087999 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
3087936 ACGATATTGA
3087946 AAATGAGCATGCCAAGGTCTAGCAAGG
1 AAATGAGCATGCCAAGGTCTAGCAAGG
* *
3087973 AAATTAGCATGCCAAGGTCTATCAAGG
1 AAATGAGCATGCCAAGGTCTAGCAAGG
3088000 GAATACAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.37, C:0.19, G:0.26, T:0.19
Consensus pattern (27 bp):
AAATGAGCATGCCAAGGTCTAGCAAGG
Found at i:3090490 original size:19 final size:19
Alignment explanation
Indices: 3090466--3090513 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
3090456 CGATACAATG
*
3090466 TATCGATACATAAGTGTTC
1 TATCGATACATAAGTGTTA
*
3090485 TATCGATACATAAGTTTTA
1 TATCGATACATAAGTGTTA
3090504 TATCGATACA
1 TATCGATACA
3090514 ATGTATCACT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (19 bp):
TATCGATACATAAGTGTTA
Found at i:3090584 original size:13 final size:13
Alignment explanation
Indices: 3090566--3090590 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3090556 ATTACTCAAA
3090566 TGTATCGATACAT
1 TGTATCGATACAT
3090579 TGTATCGATACA
1 TGTATCGATACA
3090591 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3090727 original size:52 final size:52
Alignment explanation
Indices: 3090599--3090719 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
3090589 CACTGATCTT
*
3090599 TGTATCGATACATGCAGGCAAATTTGCCTAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
*
3090651 TGTATCGATACATACAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
3090703 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
3090720 ATAAATTTTC
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:3091205 original size:13 final size:13
Alignment explanation
Indices: 3091187--3091211 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3091177 TTCAATGATT
3091187 TGTATCGATACAA
1 TGTATCGATACAA
3091200 TGTATCGATACA
1 TGTATCGATACA
3091212 TGAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3091239 original size:17 final size:19
Alignment explanation
Indices: 3091200--3091247 Score: 73
Period size: 17 Copynumber: 2.6 Consensus size: 19
3091190 ATCGATACAA
*
3091200 TGTATCGATACATGAGTGT
1 TGTATCGATACATGAGAGT
3091219 TGTATCGATACAT-A-AGT
1 TGTATCGATACATGAGAGT
3091236 TGTATCGATACA
1 TGTATCGATACA
3091248 ATGTATCGCT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
17 14 0.50
18 1 0.04
19 13 0.46
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.35
Consensus pattern (19 bp):
TGTATCGATACATGAGAGT
Found at i:3091378 original size:52 final size:52
Alignment explanation
Indices: 3091333--3091461 Score: 204
Period size: 52 Copynumber: 2.5 Consensus size: 52
3091323 CACTGATCTT
*
3091333 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCAATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* * * *
3091385 TGTATCGATACATACACGCAAATTTGCCCAGATGTATTGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
3091437 TGTATCGATACATGTAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
3091462 TCATATTTTG
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:3093624 original size:27 final size:27
Alignment explanation
Indices: 3093593--3093662 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
3093583 TTATTCATCG
3093593 GGGACACTCCAACCCCAATCCTCCGAA
1 GGGACACTCCAACCCCAATCCTCCGAA
* * *
3093620 GGGACACTCCAACCTCATTCCTCCGAG
1 GGGACACTCCAACCCCAATCCTCCGAA
3093647 GGGACACTCCAACCCC
1 GGGACACTCCAACCCC
3093663 GTTTTCAACC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.26, C:0.44, G:0.17, T:0.13
Consensus pattern (27 bp):
GGGACACTCCAACCCCAATCCTCCGAA
Found at i:3103652 original size:2 final size:2
Alignment explanation
Indices: 3103645--3103670 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3103635 TTTCATTTGC
3103645 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
3103671 TTGAATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3106209 original size:12 final size:12
Alignment explanation
Indices: 3106194--3106244 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
3106184 TATTAATATG
3106194 ATAATATTTTAT
1 ATAATATTTTAT
*
3106206 ATAAT-TTTAAT
1 ATAATATTTTAT
*
3106217 A-AAAATTTTTAT
1 ATAATA-TTTTAT
*
3106229 TTAATATTTTAT
1 ATAATATTTTAT
3106241 ATAA
1 ATAA
3106245 CTCTTAATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
10 2 0.07
11 6 0.20
12 19 0.63
13 3 0.10
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
ATAATATTTTAT
Found at i:3106210 original size:20 final size:20
Alignment explanation
Indices: 3106174--3106332 Score: 79
Period size: 20 Copynumber: 8.2 Consensus size: 20
3106164 TTTACTTATT
3106174 ATAATA-TTTATATTAATATG
1 ATAATATTTTATA-TAATATG
* *
3106194 ATAATATTTTATATAATTTTA
1 ATAATATTTTATATAA-TATG
* *
3106215 ATAAAAATTT-T-T-AT-T-
1 ATAATATTTTATATAATATG
*
3106230 -TAATATTTTATATAACTCT-
1 ATAATATTTTATATAA-TATG
*
3106249 -TAATATTTATATATAATACG
1 ATAATATTT-TATATAATATG
* *
3106269 ATGAT-TTTTATATAAT-TT
1 ATAATATTTTATATAATATG
* *
3106287 ATAATATTTTTATGTAATGTG
1 ATAATA-TTTTATATAATATG
* *
3106308 GTCATATTTTATATAATTATG
1 ATAATATTTTATATAA-TATG
3106329 ATAA
1 ATAA
3106333 AACCCCATTT
Statistics
Matches: 105, Mismatches: 20, Indels: 27
0.69 0.13 0.18
Matches are distributed among these distances:
14 7 0.07
15 1 0.01
16 2 0.02
17 2 0.02
18 6 0.06
19 19 0.18
20 39 0.37
21 29 0.28
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (20 bp):
ATAATATTTTATATAATATG
Found at i:3106778 original size:21 final size:21
Alignment explanation
Indices: 3106752--3106798 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
3106742 GCCTTTGGTA
*
3106752 ATAATTTATGTAATAAATGAT
1 ATAATTTATGCAATAAATGAT
3106773 ATAATTTATGCAATAAATGAT
1 ATAATTTATGCAATAAATGAT
3106794 ATAAT
1 ATAAT
3106799 ATTTTATACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40
Consensus pattern (21 bp):
ATAATTTATGCAATAAATGAT
Found at i:3107438 original size:3 final size:3
Alignment explanation
Indices: 3107430--3107460 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
3107420 CTACGCACAT
3107430 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
3107461 AAACACTCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:3109939 original size:2 final size:2
Alignment explanation
Indices: 3109932--3109959 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
3109922 TGTATTATGA
3109932 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
3109960 AATGATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:3126856 original size:2 final size:2
Alignment explanation
Indices: 3126849--3126890 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
3126839 AATCCGGCAG
3126849 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3126891 GCCTTTGTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3131361 original size:355 final size:355
Alignment explanation
Indices: 3130710--3131420 Score: 1368
Period size: 355 Copynumber: 2.0 Consensus size: 355
3130700 CAGTTTTAGA
3130710 CAAGGGACATGGTTGCCTAGGAACCATAATTTCTATAGCTACCTTCTGCAATATAATCCATAAGT
1 CAAGGGACATGGTTGCCTAGGAACCATAATTTCTATAGCTACCTTCTGCAATATAATCCATAAGT
* *
3130775 GTTTTAAAATTTCTAATGTATAAAGATGAAACATTTTCCTACTACTTAAGCCTTAAATTGATTAC
66 GATTTAAAATTTCTAATGTATAAAGATGAAACATCTTCCTACTACTTAAGCCTTAAATTGATTAC
3130840 TTTCCCTTTTGTCATGTTTGTTATTGTTAATTGTTGGTCCCTGTGATCTCTAAGAGCTACTAGTT
131 TTTCCCTTTTGTCATGTTTGTTATTGTTAATTGTTGGTCCCTGTGATCTCTAAGAGCTACTAGTT
3130905 TGCTTATCTCTCATCTTTCCTGCTCCCTTGCTTTTCACCCTTCTTTTACCTTGTCTTTGTTTACT
196 TGCTTATCTCTCATCTTTCCTGCTCCCTTGCTTTTCACCCTTCTTTTACCTTGTCTTTGTTTACT
3130970 GCAAAATTGAGATAGCAAGACATTCCTTCAGGAAGAACTTGATCCATTTTCACTCGTTGCCGATG
261 GCAAAATTGAGATAGCAAGACATTCCTTCAGGAAGAACTTGATCCATTTTCACTCGTTGCCGATG
3131035 AGCTGTCACTTGTTGCTAGCAGGTTACGGG
326 AGCTGTCACTTGTTGCTAGCAGGTTACGGG
3131065 CAAGGGACATGGTTGCCTAGGAACCATAATTTCTATAGCTACCTTCTGCAATATAATCCATAAGT
1 CAAGGGACATGGTTGCCTAGGAACCATAATTTCTATAGCTACCTTCTGCAATATAATCCATAAGT
3131130 GATTTAAAATTTCTAATGTATAAAGATGAAACATCTTCCTACTACTTAAGCCTTAAATTGATTAC
66 GATTTAAAATTTCTAATGTATAAAGATGAAACATCTTCCTACTACTTAAGCCTTAAATTGATTAC
* *
3131195 TTTCCCTTTTGTCATGTTTGTTATTGTTAATTGTTGGTGCCTGTGATCTTTAAGAGCTACTAGTT
131 TTTCCCTTTTGTCATGTTTGTTATTGTTAATTGTTGGTCCCTGTGATCTCTAAGAGCTACTAGTT
*
3131260 TGCTTATCTCTCATCTTTCCTGCTCCCTTGCTTTTCACCCTTCTTTTATCTTGTCTTTGTTTACT
196 TGCTTATCTCTCATCTTTCCTGCTCCCTTGCTTTTCACCCTTCTTTTACCTTGTCTTTGTTTACT
*
3131325 GCAAAATTGAGATAGCAAGACATTCCTTCAGGAAGAACTTGATCCATTTTCACTTGTTGCCGATG
261 GCAAAATTGAGATAGCAAGACATTCCTTCAGGAAGAACTTGATCCATTTTCACTCGTTGCCGATG
3131390 AGCTGTCACTTGTTGCTAGCAGGTTACGGG
326 AGCTGTCACTTGTTGCTAGCAGGTTACGGG
3131420 C
1 C
3131421 TATGGTTGTT
Statistics
Matches: 350, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
355 350 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (355 bp):
CAAGGGACATGGTTGCCTAGGAACCATAATTTCTATAGCTACCTTCTGCAATATAATCCATAAGT
GATTTAAAATTTCTAATGTATAAAGATGAAACATCTTCCTACTACTTAAGCCTTAAATTGATTAC
TTTCCCTTTTGTCATGTTTGTTATTGTTAATTGTTGGTCCCTGTGATCTCTAAGAGCTACTAGTT
TGCTTATCTCTCATCTTTCCTGCTCCCTTGCTTTTCACCCTTCTTTTACCTTGTCTTTGTTTACT
GCAAAATTGAGATAGCAAGACATTCCTTCAGGAAGAACTTGATCCATTTTCACTCGTTGCCGATG
AGCTGTCACTTGTTGCTAGCAGGTTACGGG
Found at i:3136321 original size:21 final size:22
Alignment explanation
Indices: 3136291--3136333 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
3136281 GGGAATTTCA
*
3136291 GATATAATTTTGTGATTATTTT
1 GATATAATTTGGTGATTATTTT
*
3136313 GATAT-ATTTGGTGCTTATTTT
1 GATATAATTTGGTGATTATTTT
3136334 CGTATTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.23, C:0.02, G:0.16, T:0.58
Consensus pattern (22 bp):
GATATAATTTGGTGATTATTTT
Found at i:3136846 original size:29 final size:29
Alignment explanation
Indices: 3136806--3136878 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 29
3136796 ATATTTCAAG
* * *
3136806 TAATTTTGAAAAGTTTAGGGATTAAAGTA
1 TAATTTTAAAAAGTTTAAGAATTAAAGTA
*
3136835 TAATTTTAAAAAGTTTAAGAATTAAATTA
1 TAATTTTAAAAAGTTTAAGAATTAAAGTA
3136864 TAATTTTAAAAAGTT
1 TAATTTTAAAAAGTT
3136879 CAGAGACCCG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (29 bp):
TAATTTTAAAAAGTTTAAGAATTAAAGTA
Found at i:3140559 original size:21 final size:23
Alignment explanation
Indices: 3140515--3140566 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
3140505 TTTTAAATTT
*
3140515 AATAAGTTAAAATATATAATATA
1 AATAAATTAAAATATATAATATA
3140538 AATAAATTAAAATATATAATA-A
1 AATAAATTAAAATATATAATATA
3140560 AA-AAATT
1 AATAAATT
3140567 TAGCTTTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
21 5 0.18
22 3 0.11
23 20 0.71
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
AATAAATTAAAATATATAATATA
Found at i:3141382 original size:3 final size:3
Alignment explanation
Indices: 3141374--3141416 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
3141364 AAAAAGTTAT
3141374 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
3141417 GTTTTTGACT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:3141604 original size:3 final size:3
Alignment explanation
Indices: 3141590--3141620 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
3141580 GTCAGATCAA
*
3141590 TAT TAA TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
3141621 CTGATTTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:3148177 original size:21 final size:22
Alignment explanation
Indices: 3148153--3148200 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
3148143 ATTATTGATG
3148153 ATATATTAATAAA-AAATTAAA
1 ATATATTAATAAATAAATTAAA
*
3148174 ATAT-TTTATAAATAAATTAAA
1 ATATATTAATAAATAAATTAAA
*
3148195 AAATAT
1 ATATAT
3148201 ATTTTTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 7 0.30
21 15 0.65
22 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
ATATATTAATAAATAAATTAAA
Found at i:3148863 original size:29 final size:28
Alignment explanation
Indices: 3148831--3148894 Score: 65
Period size: 29 Copynumber: 2.2 Consensus size: 28
3148821 TTTACTGTAG
* *
3148831 TAAAATGAGCATTTTAATTTTTATATTAT
1 TAAAATGAACATTTAAATTTTTATATT-T
* * *
3148860 TAAATTTAATATTTAAATTTTTATATTT
1 TAAAATGAACATTTAAATTTTTATATTT
3148888 TGAAAAT
1 T-AAAAT
3148895 TGAAACAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
28 2 0.07
29 26 0.93
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.53
Consensus pattern (28 bp):
TAAAATGAACATTTAAATTTTTATATTT
Found at i:3148887 original size:21 final size:21
Alignment explanation
Indices: 3148843--3148887 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
3148833 AAATGAGCAT
* *
3148843 TTTAATTTTTATATTATTAAA
1 TTTAATATTTAAATTATTAAA
* *
3148864 TTTAATATTTAAATTTTTATA
1 TTTAATATTTAAATTATTAAA
3148885 TTT
1 TTT
3148888 TGAAAATTGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
TTTAATATTTAAATTATTAAA
Found at i:3149081 original size:21 final size:19
Alignment explanation
Indices: 3149060--3149106 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
3149050 TCAATATTTA
3149060 AATAATTTTTTTATATTATT
1 AATAATTTTTTTAT-TTATT
*
3149080 AATTA-TTTTTTATTTATT
1 AATAATTTTTTTATTTATT
3149098 -ATAATTTTT
1 AATAATTTTT
3149107 AAAATATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 3 0.12
18 9 0.38
19 8 0.33
20 4 0.17
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
AATAATTTTTTTATTTATT
Found at i:3149104 original size:17 final size:19
Alignment explanation
Indices: 3149060--3149106 Score: 62
Period size: 17 Copynumber: 2.5 Consensus size: 19
3149050 TCAATATTTA
3149060 AATAATTTTTTTATATTATT
1 AATAA-TTTTTTATATTATT
*
3149080 AATTATTTTTTAT-TTATT
1 AATAATTTTTTATATTATT
3149098 -ATAATTTTT
1 AATAATTTTT
3149107 AAAATATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 8 0.32
18 5 0.20
19 8 0.32
20 4 0.16
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
AATAATTTTTTATATTATT
Found at i:3152813 original size:30 final size:31
Alignment explanation
Indices: 3152754--3152821 Score: 86
Period size: 30 Copynumber: 2.2 Consensus size: 31
3152744 CAGTAATATG
*
3152754 ATTTAAATTATAATTTTAATAACAAATATTA
1 ATTTAAATTATAATTATAATAACAAATATTA
*
3152785 ATTT-AATTA-AATTATAATATATAAATATTA
1 ATTTAAATTATAATTATAATA-ACAAATATTA
*
3152815 ATATAAA
1 ATTTAAA
3152822 AATAATATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 9 0.28
30 17 0.53
31 6 0.19
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (31 bp):
ATTTAAATTATAATTATAATAACAAATATTA
Found at i:3152816 original size:25 final size:24
Alignment explanation
Indices: 3152779--3152852 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 24
3152769 TTAATAACAA
*
3152779 ATATTAAT-TTAATTAAATTATAAT
1 ATATTAATATTAATTAAA-AATAAT
*
3152803 ATATAAATATTAATATAAAAATAAT
1 ATATTAATATTAAT-TAAAAATAAT
* *
3152828 ATTTTAATATT-ATTAATAAAAAAT
1 ATATTAATATTAATTAA-AAATAAT
3152852 A
1 A
3152853 AAATTTTAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
23 3 0.07
24 16 0.38
25 19 0.45
26 4 0.10
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
ATATTAATATTAATTAAAAATAAT
Found at i:3152858 original size:27 final size:27
Alignment explanation
Indices: 3152806--3152865 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
3152796 TTATAATATA
*
3152806 TAAA-TATTAATATAAAAATAATATTT
1 TAAATTATTAATATAAAAATAAAATTT
3152832 TAATATTATTAATA-AAAAATAAAATTT
1 TAA-ATTATTAATATAAAAATAAAATTT
3152859 TAAATTA
1 TAAATTA
3152866 ACTCAATTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 7 0.23
27 16 0.52
28 8 0.26
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (27 bp):
TAAATTATTAATATAAAAATAAAATTT
Found at i:3154791 original size:13 final size:15
Alignment explanation
Indices: 3154761--3154792 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
3154751 AAGATCATTT
3154761 AAATATAGAAAAAGA
1 AAATATAGAAAAAGA
3154776 AAATAT-GAAAAA-A
1 AAATATAGAAAAAGA
3154789 AAAT
1 AAAT
3154793 GACATTAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 5 0.29
14 6 0.35
15 6 0.35
ACGTcount: A:0.75, C:0.00, G:0.09, T:0.16
Consensus pattern (15 bp):
AAATATAGAAAAAGA
Found at i:3161909 original size:24 final size:24
Alignment explanation
Indices: 3161881--3161927 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
3161871 TTTGTAAAAT
3161881 CATATTAAAATTTAAATTATTATC
1 CATATTAAAATTTAAATTATTATC
* *
3161905 CATATTAAATTTTATATTATTAT
1 CATATTAAAATTTAAATTATTAT
3161928 TTAAATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (24 bp):
CATATTAAAATTTAAATTATTATC
Found at i:3161935 original size:24 final size:24
Alignment explanation
Indices: 3161884--3161938 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
3161874 GTAAAATCAT
* *
3161884 ATTAAAATTTAAATTATTATCCAT
1 ATTAAATTTTAAATTATTATCCAA
* **
3161908 ATTAAATTTTATATTATTATTTAA
1 ATTAAATTTTAAATTATTATCCAA
3161932 ATTAAAT
1 ATTAAAT
3161939 AATTTATCTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (24 bp):
ATTAAATTTTAAATTATTATCCAA
Found at i:3162952 original size:7 final size:7
Alignment explanation
Indices: 3162908--3162936 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
3162898 TAATGTTATC
3162908 TAATATA
1 TAATATA
3162915 TAATATA
1 TAATATA
3162922 TAATATA
1 TAATATA
3162929 TAATATA
1 TAATATA
3162936 T
1 T
3162937 TCTGTATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
TAATATA
Found at i:3162964 original size:13 final size:13
Alignment explanation
Indices: 3162910--3162979 Score: 54
Period size: 14 Copynumber: 5.1 Consensus size: 13
3162900 ATGTTATCTA
*
3162910 ATATATAATATATA
1 ATATATAA-ATATT
3162924 ATATATAATATATTCT
1 ATATATAA-ATA-T-T
*
3162940 GTATATATAATATT
1 ATATATA-AATATT
3162954 ATA-ATAAAATATT
1 ATATAT-AAATATT
3162967 -TATATAAATATT
1 ATATATAAATATT
3162979 A
1 A
3162980 AGTATTCTAA
Statistics
Matches: 47, Mismatches: 3, Indels: 13
0.75 0.05 0.21
Matches are distributed among these distances:
12 9 0.19
13 10 0.21
14 16 0.34
15 2 0.04
16 9 0.19
17 1 0.02
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (13 bp):
ATATATAAATATT
Found at i:3163481 original size:19 final size:19
Alignment explanation
Indices: 3163457--3163493 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
3163447 CAAGCCAAAT
*
3163457 TTCAATTCTTACATTGAGG
1 TTCAATTCTCACATTGAGG
*
3163476 TTCAATTGTCACATTGAG
1 TTCAATTCTCACATTGAG
3163494 TATAAGATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (19 bp):
TTCAATTCTCACATTGAGG
Found at i:3168323 original size:16 final size:16
Alignment explanation
Indices: 3168302--3168339 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
3168292 TTACATTTAA
*
3168302 TTTTATTCATGTTCGG
1 TTTTATTCATGTTCAG
3168318 TTTTA-TCATGTTCAG
1 TTTTATTCATGTTCAG
3168333 TTTTATT
1 TTTTATT
3168340 AAGTATTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.16, C:0.11, G:0.13, T:0.61
Consensus pattern (16 bp):
TTTTATTCATGTTCAG
Found at i:3170588 original size:20 final size:20
Alignment explanation
Indices: 3170560--3170634 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
3170550 TCATACCCTG
3170560 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
3170580 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
3170600 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
3170620 ATGTATCGATACATT
1 ATGTATCGATACATT
3170635 ATGTCTTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:3170627 original size:40 final size:39
Alignment explanation
Indices: 3170560--3170637 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
3170550 TCATACCCTG
* *
3170560 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
3170600 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
3170638 TCTTTTTACC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:3171575 original size:23 final size:23
Alignment explanation
Indices: 3171545--3171600 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 23
3171535 AGCCTTTGAC
3171545 CATGCATTTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
3171568 CATGCA-TTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
3171590 CATGCATTTTT
1 CATGCATTTTT
3171601 AACATGTCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 22 0.69
23 10 0.31
ACGTcount: A:0.18, C:0.11, G:0.09, T:0.62
Consensus pattern (23 bp):
CATGCATTTTTTTTATTATGTTT
Found at i:3171607 original size:20 final size:21
Alignment explanation
Indices: 3171553--3171607 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
3171543 ACCATGCATT
**
3171553 TTTTTTATTATGTTTCATGCA
1 TTTTTTAACATGTTTCATGCA
**
3171574 TTTTTTTATTATGTTTCATGCA
1 -TTTTTTAACATGTTTCATGCA
3171596 -TTTTTAACATGT
1 TTTTTTAACATGT
3171608 CCAGCATCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 10 0.32
22 21 0.68
ACGTcount: A:0.20, C:0.09, G:0.09, T:0.62
Consensus pattern (21 bp):
TTTTTTAACATGTTTCATGCA
Found at i:3175711 original size:15 final size:15
Alignment explanation
Indices: 3175691--3175727 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
3175681 AGCATCACAA
3175691 ATCGACCCCATAACT
1 ATCGACCCCATAACT
3175706 ATCGACCCCATAACT
1 ATCGACCCCATAACT
*
3175721 ATTGACC
1 ATCGACC
3175728 ACAAGGGCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.32, C:0.38, G:0.08, T:0.22
Consensus pattern (15 bp):
ATCGACCCCATAACT
Found at i:3179157 original size:27 final size:27
Alignment explanation
Indices: 3179114--3180858 Score: 2905
Period size: 27 Copynumber: 64.0 Consensus size: 27
3179104 GTGGCATTTT
*
3179114 CTTTTAAAGTCCACAACTCTGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
* *
3179142 CTTTTTAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3179169 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3179196 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3179223 CTTTTAAGTCCACAACTCCGTGGTACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3179250 CTTTTAAGTCCACAACTCCGTGGCATTC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
*
3179278 CTTTTAAGACCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3179305 CTTTTAAGACCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
3179332 CTTTTAAGTCCATAACTCCATGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
3179360 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3179387 CTTTTAAGACCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3179414 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* * *
3179441 CTTTTAAGCCCACAACTCTGTGGCATC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3179468 CTTTTAAGTCCACAACTCCGTGGCATTC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
* *
3179496 CTTTTAAGACCACAACTTCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3179523 CTTTTAAGACCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
3179550 CTTTTAAGTCCATAACTCCATGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
3179578 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3179605 CTTTTAAGACCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3179632 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* * *
3179659 CTTTTAAGCCCACAACTCTGTGGCATC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3179686 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3179713 CTTTTAAAGTCCACAACTCCGTGGTACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
3179741 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3179768 CTTTTAAAGTCCACAACTCTGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
3179796 CTTTTAAAGTCCACAACTCTGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
3179824 CTTTTTAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
3179851 CTTTTTAGTCCACAACTCCGTGGTACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3179878 CTTTTAAGTCCACAACCCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3179905 CTTTTTAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3179932 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3179959 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3179986 CTTTTAAGTCCACAACTCCGTGGCATTC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
* *
3180014 CTTTTAAGACCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3180041 CTTTTAAGACCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3180068 CTTTTAAGTCCACAACTCCATGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3180095 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3180122 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3180149 CTTTTAAGTCCACAACTCCGTGGCATTC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
*
3180177 CTTTTAAGTCCACAACTCCGTGGCATTC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
3180205 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3180232 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3180259 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3180286 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3180313 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3180340 CTTTTAAGACCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3180367 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3180394 CTTTTAAGTCCACAACTCCGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
*
3180422 CTTTTAAGTCCACAACTCCGTGGCATCT
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
3180450 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3180477 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
3180504 TTTTTAAGTCCACAACTCCGTGGCACT
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3180531 CTTTTAAGTCCACAACTCCGTGGCACT
1 CTTTTAAGTCCACAACTCCGTGGCACC
3180558 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3180585 CTTTTAAGTCCACAACTCCGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
*
3180613 CTTTTAAGACCACAACTCCGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
3180641 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3180668 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3180695 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3180722 CTTTTAAGTCCACAACTCCGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
*
3180750 CTTTTAAGACCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3180777 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3180804 CTTTTAAGTCCACAACTCCGTGGCATC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3180831 CTTTTAAATCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3180858 C
1 C
3180859 ATTTCAAAGC
Statistics
Matches: 1632, Mismatches: 74, Indels: 23
0.94 0.04 0.01
Matches are distributed among these distances:
27 1236 0.76
28 396 0.24
ACGTcount: A:0.23, C:0.35, G:0.14, T:0.27
Consensus pattern (27 bp):
CTTTTAAGTCCACAACTCCGTGGCACC
Found at i:3179492 original size:218 final size:216
Alignment explanation
Indices: 3179114--3180858 Score: 2889
Period size: 218 Copynumber: 8.0 Consensus size: 216
3179104 GTGGCATTTT
* * *
3179114 CTTTTAAAGTCCACAACTCTGTGGCACCCTTTTTAGTCCACAACTCTGTGGCACCCTTTTAAGTC
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
3179179 CACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGT
65 CACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGT
* * *
3179244 GGTACCCTTTTAAGTCCACAACTCCGTGGCATTCCTTTTAAGACCACAACTCCGTGGCACCCTTT
130 GGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTT
3179309 TAAGACCACAACTCCGTGGCACC
194 TAAGACCACAACTCCGTGGCACC
* * *
3179332 CTTTTAAGTCCATAACTCCATGGCATCCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGAC
1 CTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
* *
3179397 CACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCTGT
65 CACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGT
* * * *
3179462 GGCATCCTTTTAAGTCCACAACTCCGTGGCATTCCTTTTAAGACCACAACTTCGTGGCACCCTTT
130 GGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTT
3179527 TAAGACCACAACTCCGTGGCACC
194 TAAGACCACAACTCCGTGGCACC
* * *
3179550 CTTTTAAGTCCATAACTCCATGGCATCCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGAC
1 CTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
* *
3179615 CACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCTGT
65 CACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGT
* * *
3179680 GGCATCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAAGTCCACAACTCCGTGGTACCCTTT
130 GGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACCCTTT
* *
3179745 TAAGTCCACAACTCTGTGGCACC
194 TAAGACCACAACTCCGTGGCACC
* * *
3179768 CTTTTAAAGTCCACAACTCTGTGGCACCCTTTTAAAGTCCACAACTCTGTGGCACCCTTTTTAGT
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGT
* * *
3179833 CCACAACTCCGTGGCACCCTTTTTAGTCCACAACTCCGTGGTACCCTTTTAAGTCCACAACCCCG
64 CCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCG
*
3179898 TGGCACCCTTTTTAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTT
129 TGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTT
*
3179963 TAAGTCCACAACTCCGTGGCACC
194 TAAGACCACAACTCCGTGGCACC
* * * *
3179986 CTTTTAAGTCCACAACTCCGTGGCATTCCTTTTAAGACCACAACTCTGTGGCACCCTTTTAAGAC
1 CTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
*
3180051 CACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCGT
65 CACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGT
*
3180116 GGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATTCCTTT
130 GGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCCTTT
* *
3180181 TAAGTCCACAACTCCGTGGCATTC
194 TAAGACCACAACTCCGTGGCA-CC
3180205 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
3180270 ACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTG
66 ACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTG
*
3180335 GCACCCTTTTAAGACCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTA
131 GCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTA
*
3180400 AGTCCACAACTCCGTGGCATCC
196 AGACCACAACTCCGTGGCA-CC
*
3180422 CTTTTAAGTCCACAACTCCGTGGCATCTCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
1 CTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
* *
3180487 CACAACTCCGTGGCACCTTTTTAAGTCCACAACTCCGTGGCACTCTTTTAAGTCCACAACTCCGT
65 CACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGT
*
3180552 GGCACTCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCCTTT
130 GGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCCTTT
3180617 TAAGACCACAACTCCGTGGCATCC
194 TAAGACCACAACTCCGTGGCA-CC
3180641 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
*
3180706 ACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCCTTTTAAGACCACAACTCCGT
66 ACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGT
*
3180771 GGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCTTTT
130 GGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT
3180836 AA-ATCCACAACTCCGTGGCACC
195 AAGA-CCACAACTCCGTGGCACC
3180858 C
1 C
3180859 ATTTCAAAGC
Statistics
Matches: 1450, Mismatches: 66, Indels: 23
0.94 0.04 0.01
Matches are distributed among these distances:
217 246 0.17
218 905 0.62
219 299 0.21
ACGTcount: A:0.23, C:0.35, G:0.14, T:0.27
Consensus pattern (216 bp):
CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
ACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTG
GCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTA
AGACCACAACTCCGTGGCACC
Found at i:3180896 original size:32 final size:32
Alignment explanation
Indices: 3180841--3181697 Score: 1423
Period size: 32 Copynumber: 26.8 Consensus size: 32
3180831 CTTTTAAATC
* *
3180841 CACAACTCCGTGGC-ACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
3180872 CACAAGTCAGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
3180904 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
3180936 CACATGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
3180968 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
3181000 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
3181032 CACAAGTTGGTGGCAACCTATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
3181064 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
3181096 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
3181128 CACAAGTCGGTGGCAACTCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
3181160 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
3181192 CACAAGTCGGTGGCAACCCACTTCAAAGCTCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
3181224 CACAAGGCGGTGGCAACCTATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
3181256 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
3181288 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
3181320 CACAAGTCGGTGGCAACTCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
3181352 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
3181384 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
3181416 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
3181448 CAC-AGCCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
3181479 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
3181511 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
3181543 CACAAGTCGGTGGCAACCCATTTCAAAACCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
3181575 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
3181607 CACAAGTCGGTGGCAACTCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
3181639 CACAAGTCGGTGGCAACCCATTTAAAAGCCTA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
** *
3181671 TGCAAGTCAGTGGCAACCC-TATTCAAA
1 CACAAGTCGGTGGCAACCCAT-TTCAAA
3181698 TCACCATTTT
Statistics
Matches: 778, Mismatches: 45, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
31 43 0.06
32 735 0.94
ACGTcount: A:0.31, C:0.35, G:0.18, T:0.16
Consensus pattern (32 bp):
CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
Found at i:3182208 original size:20 final size:20
Alignment explanation
Indices: 3182180--3182254 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
3182170 TCATACCCTG
3182180 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
3182200 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
3182220 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
3182240 ATGTATCGATACATT
1 ATGTATCGATACATT
3182255 ATGTCTTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:3182247 original size:40 final size:39
Alignment explanation
Indices: 3182180--3182257 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
3182170 TCATACCCTG
* *
3182180 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
3182220 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
3182258 TCTTTTTACC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:3183195 original size:23 final size:23
Alignment explanation
Indices: 3183165--3183220 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 23
3183155 AGCCTTTGAC
3183165 CATGCATTTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
3183188 CATGCA-TTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
3183210 CATGCATTTTT
1 CATGCATTTTT
3183221 AACATGTACA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 22 0.69
23 10 0.31
ACGTcount: A:0.18, C:0.11, G:0.09, T:0.62
Consensus pattern (23 bp):
CATGCATTTTTTTTATTATGTTT
Found at i:3183227 original size:20 final size:21
Alignment explanation
Indices: 3183173--3183227 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
3183163 ACCATGCATT
**
3183173 TTTTTTATTATGTTTCATGCA
1 TTTTTTAACATGTTTCATGCA
**
3183194 TTTTTTTATTATGTTTCATGCA
1 -TTTTTTAACATGTTTCATGCA
3183216 -TTTTTAACATGT
1 TTTTTTAACATGT
3183228 ACAGCATCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 10 0.32
22 21 0.68
ACGTcount: A:0.20, C:0.09, G:0.09, T:0.62
Consensus pattern (21 bp):
TTTTTTAACATGTTTCATGCA
Found at i:3187706 original size:30 final size:30
Alignment explanation
Indices: 3187672--3187766 Score: 84
Period size: 30 Copynumber: 3.5 Consensus size: 30
3187662 CATTGTTCAT
3187672 TGTATCGATACATTTTGGATTTTACCCAGA
1 TGTATCGATACATTTTGGATTTTACCCAGA
* *
3187702 TGTATCGAT--A---T--ATTTT--TCA-T
1 TGTATCGATACATTTTGGATTTTACCCAGA
* *
3187722 TATATCGATACATTTTGGGTTTTACCCAGA
1 TGTATCGATACATTTTGGATTTTACCCAGA
3187752 TGTATCGATACATTT
1 TGTATCGATACATTT
3187767 CTCAATTTAT
Statistics
Matches: 48, Mismatches: 7, Indels: 20
0.64 0.09 0.27
Matches are distributed among these distances:
20 8 0.17
21 2 0.04
22 1 0.02
23 5 0.10
25 2 0.04
27 4 0.08
28 1 0.02
29 2 0.04
30 23 0.48
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (30 bp):
TGTATCGATACATTTTGGATTTTACCCAGA
Found at i:3187706 original size:50 final size:48
Alignment explanation
Indices: 3187652--3187785 Score: 187
Period size: 50 Copynumber: 2.7 Consensus size: 48
3187642 TTTCACAATT
*
3187652 TGTATGGATACATTGTTCATTGTATCGATACATTTTGGATTTTACCCAGA
1 TGTATCGATACATT-TTCATT-TATCGATACATTTTGGATTTTACCCAGA
* *
3187702 TGTATCGATATATTTTTCATTATATCGATACATTTTGGGTTTTACCCAGA
1 TGTATCGATACA-TTTTCATT-TATCGATACATTTTGGATTTTACCCAGA
3187752 TGTATCGATACATTTCTCAATTTATCGATACATT
1 TGTATCGATACATTT-TC-ATTTATCGATACATT
3187786 CAGACATTTT
Statistics
Matches: 76, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
49 3 0.04
50 68 0.89
51 5 0.07
ACGTcount: A:0.27, C:0.15, G:0.14, T:0.44
Consensus pattern (48 bp):
TGTATCGATACATTTTCATTTATCGATACATTTTGGATTTTACCCAGA
Found at i:3190345 original size:157 final size:158
Alignment explanation
Indices: 3190138--3190882 Score: 789
Period size: 157 Copynumber: 4.7 Consensus size: 158
3190128 ATTCATGTTT
* * ** *
3190138 TTATTTCCGAGGAGATACTCCAACCCCGGTTTTATTCCCAAAACACCAATTTTTCATAATCGGAG
1 TTATTTCCGAGGAGATACTTCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATCGGAG
* *
3190203 ATACTCTAACCCCGTTATTTTCGAGATGATAC-CCAACCCCAGTTTTATTTCCAAAACATCAATT
66 ATACTCCAACCCCGTTATTTTCGAGAGGATACTCCAACCCCAGTTTTATTTCCAAAACATCAATT
*
3190267 TTTCACAATCT-GGGATACTCCAACCCCA
131 TTTCACAAT-TAGGGATACTCCAACCCCG
* * * * *
3190295 TTACTTCCGA-GAGGATACTTCAACCTCGATTTTATTTTCAAAATATCAATTTTTCACAATCGGG
1 TTATTTCCGAGGA-GATACTTCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATCGGA
* * * * * * *
3190359 GATACTCCAACCTCGTTACTTTCGAG-GAGATACTCCAACCTCGGTTTTATTTCTAAAATACCAA
65 GATACTCCAACCCCGTTATTTTCGAGAG-GATACTCCAACCCCAGTTTTATTTCCAAAACATCAA
*
3190423 -TTTTCTACAATTGGGGATACTCCAACCCCG
129 TTTTTC-ACAATTAGGGATACTCCAACCCCG
* * * *
3190453 TTATTTCCGAGGAGATACTCCAACCTCGA-TTT-TTTTCTAAAATACCGATTTTTCACAATCGGA
1 TTATTTCCGAGGAGATACTTCAACCCCGATTTTATTTTC-AAAACACCAATTTTTCACAATCGGA
* * * **
3190516 GATACTCCAACCCCGTTATTTTTGAGGGGATACTTCAACCCC-GATTTTATTTCTC-AAACATTG
65 GATACTCCAACCCCGTTATTTTCGAGAGGATACTCCAACCCCAG-TTTTATTTC-CAAAACATCA
* ** *
3190579 ATTTTTCATAATTAGGGATACTTTAACCTCG
128 ATTTTTCACAATTAGGGATACTCCAACCCCG
* * * * *
3190610 TTATTTTCGAGGAGATAC-TCTAACCCCGGTTTTTATTTTCAAAACATCGATTTTCCACAATC-G
1 TTATTTCCGAGGAGATACTTC-AACCCC-GATTTTATTTTCAAAACACCAATTTTTCACAATCGG
* * * * * * *
3190673 AGGATACTCCAACCCCGTTATTTCCGAGGGGATACTTCAATCCCAGTTTTATTTTCAAAACGTCG
64 A-GATACTCCAACCCCGTTATTTTCGAGAGGATACTCCAACCCCAGTTTTATTTCCAAAACATCA
* **
3190738 ATTTTTCACGATCGGGGATACTCCAACCCCG
128 ATTTTTCACAATTAGGGATACTCCAACCCCG
* *
3190769 TTATTTCTGAGGAGATAC-TCAAACCCCGGTTTTATTTTCAAAACACCAATTTTTCACAATCAGG
1 TTATTTCCGAGGAGATACTTC-AACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATC-GG
* * *
3190833 -GATACTCCAACCCCGTTATTTCCGA-AGGGATACTCCAACCTCGGTTTTAT
64 AGATACTCCAACCCCGTTATTTTCGAGA-GGATACTCCAACCCCAGTTTTAT
3190883 CTCTAAAATA
Statistics
Matches: 495, Mismatches: 72, Indels: 41
0.81 0.12 0.07
Matches are distributed among these distances:
156 9 0.02
157 200 0.40
158 154 0.31
159 125 0.25
160 7 0.01
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (158 bp):
TTATTTCCGAGGAGATACTTCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACAATCGGAG
ATACTCCAACCCCGTTATTTTCGAGAGGATACTCCAACCCCAGTTTTATTTCCAAAACATCAATT
TTTCACAATTAGGGATACTCCAACCCCG
Found at i:3190349 original size:79 final size:78
Alignment explanation
Indices: 3190138--3190882 Score: 767
Period size: 79 Copynumber: 9.4 Consensus size: 78
3190128 ATTCATGTTT
* ** * *
3190138 TTATTTCCGAGGAGATACTCCAACCCCGGTTTTATTCCCAAAACACCAATTTTTCATAATCGGAG
1 TTATTTCCGAGGAGATACTCCAACCCCGATTTTATTTTCAAAACATCAATTTTTCACAATCGG-G
*
3190203 ATACTCTAACCCCG
65 ATACTCCAACCCCG
* *
3190217 TTATTTTCGA-GATGATAC-CCAACCCC-AGTTTTATTTCCAAAACATCAATTTTTCACAATCTG
1 TTATTTCCGAGGA-GATACTCCAACCCCGA-TTTTATTTTCAAAACATCAATTTTTCACAATC-G
*
3190279 GGATACTCCAACCCCA
63 GGATACTCCAACCCCG
* * * *
3190295 TTACTTCCGA-GAGGATACTTCAACCTCGATTTTATTTTCAAAATATCAATTTTTCACAATCGGG
1 TTATTTCCGAGGA-GATACTCCAACCCCGATTTTATTTTCAAAACATCAATTTTTCACAATC-GG
*
3190359 GATACTCCAACCTCG
64 GATACTCCAACCCCG
* * * * *
3190374 TTACTTT-CGAGGAGATACTCCAACCTCGGTTTTA-TTTCTAAAATACCAA-TTTTCTACAATTG
1 TTA-TTTCCGAGGAGATACTCCAACCCCGATTTTATTTTC-AAAACATCAATTTTTC-ACAA-TC
3190436 GGGATACTCCAACCCCG
62 GGGATACTCCAACCCCG
* * * *
3190453 TTATTTCCGAGGAGATACTCCAACCTCGA-TTT-TTTTCTAAAATACCGATTTTTCACAATCGGA
1 TTATTTCCGAGGAGATACTCCAACCCCGATTTTATTTTC-AAAACATCAATTTTTCACAATCGG-
3190516 GATACTCCAACCCCG
64 GATACTCCAACCCCG
** * * ** * *
3190531 TTATTTTTGAGGGGATACTTCAACCCCGATTTTATTTCTC-AAACATTGATTTTTCATAATTAGG
1 TTATTTCCGAGGAGATACTCCAACCCCGATTTTATTT-TCAAAACATCAATTTTTCACAA-TCGG
** *
3190595 GATACTTTAACCTCG
64 GATACTCCAACCCCG
* * * * *
3190610 TTATTTTCGAGGAGATACTCTAACCCCGGTTTTTATTTTCAAAACATCGATTTTCCACAATCGAG
1 TTATTTCCGAGGAGATACTCCAACCCC-GATTTTATTTTCAAAACATCAATTTTTCACAATCG-G
3190675 GATACTCCAACCCCG
64 GATACTCCAACCCCG
* * * * * *
3190690 TTATTTCCGAGGGGATACTTCAATCCC-AGTTTTATTTTCAAAACGTCGATTTTTCACGATCGGG
1 TTATTTCCGAGGAGATACTCCAACCCCGA-TTTTATTTTCAAAACATCAATTTTTCACAATC-GG
3190754 GATACTCCAACCCCG
64 GATACTCCAACCCCG
* * * *
3190769 TTATTTCTGAGGAGATACTCAAACCCCGGTTTTATTTTCAAAACACCAATTTTTCACAATCAGGG
1 TTATTTCCGAGGAGATACTCCAACCCCGATTTTATTTTCAAAACATCAATTTTTCACAATC-GGG
3190834 ATACTCCAACCCCG
65 ATACTCCAACCCCG
* *
3190848 TTATTTCCGAAGG-GATACTCCAACCTCGGTTTTAT
1 TTATTTCCG-AGGAGATACTCCAACCCCGATTTTAT
3190883 CTCTAAAATA
Statistics
Matches: 567, Mismatches: 74, Indels: 50
0.82 0.11 0.07
Matches are distributed among these distances:
77 3 0.01
78 139 0.25
79 347 0.61
80 76 0.13
81 2 0.00
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (78 bp):
TTATTTCCGAGGAGATACTCCAACCCCGATTTTATTTTCAAAACATCAATTTTTCACAATCGGGA
TACTCCAACCCCG
Found at i:3190522 original size:236 final size:231
Alignment explanation
Indices: 3190138--3190890 Score: 856
Period size: 236 Copynumber: 3.2 Consensus size: 231
3190128 ATTCATGTTT
* * * *
3190138 TTATTTCCGAGGAGATACTCCAACCCCGGTTTTATTCCCAAAACACCAATTTT-TCATAATCGGA
1 TTATTT-CGAGGAGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTCT-ACAATCGGG
* * * *
3190202 GATACTCTAACCCCGTTATTTTCGA-GATGATAC-CCAACCCCAGTTTTATTTCCAAAACATCAA
64 GATACTCCAACCCCGTTATTTCCGAGGA-GATACTCCAACCCGA-TTTT-TTT-CAAAACATCGA
* * * *
3190265 TTTTTCACAATCTGGGATACTCCAACCCCATTACTTCCGAGAGGATACTTCAACCTCGATTTTAT
125 TTTTTCACAATC-GGGATACTCCAACCCCGTTATTTCTGAG-GGATACTTCAACCCCGATTTTAT
*
3190330 TTTCAAAATATCAATTTTTCACAATCGGGGATACTCCAACCTCG
188 TTTCAAAATATCAATTTTTCACAATCAGGGATACTCCAACCTCG
* * *
3190374 TTACTTTCGAGGAGATACTCCAACCTCGGTTTTATTTCTAAAATACCAATTTTCTACAATTGGGG
1 TTA-TTTCGAGGAGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTCTACAATCGGGG
* *
3190439 ATACTCCAACCCCGTTATTTCCGAGGAGATACTCCAACCTCGATTTTTTTCTAAAATACCGATTT
65 ATACTCCAACCCCGTTATTTCCGAGGAGATACTCCAACC-CGATTTTTTTC-AAAACATCGATTT
*
3190504 TTCACAATCGGAGATACTCCAACCCCGTTATTTTTGAGGGGATACTTCAACCCCGATTTTATTTC
128 TTCACAATCGG-GATACTCCAACCCCGTTATTTCTGA-GGGATACTTCAACCCCGATTTTATTT-
* * * **
3190569 TCAAACAT-T-GATTTTTCATAATTAGGGATACTTTAACCTCG
190 TCAAA-ATATCAATTTTTCACAATCAGGGATACTCCAACCTCG
* * * * *
3190610 TTATTTTCGAGGAGATACTCTAACCCCGGTTTTTATTT-TCAAAACATCGATTTTCCACAATCGA
1 TTA-TTTCGAGGAGATACTCCAACCCCGG-TTTTATTTCT-AAAACACCAATTTTCTACAATCGG
* * * *
3190674 GGATACTCCAACCCCGTTATTTCCGAGGGGATACTTCAATCCCAGTTTTATTTTCAAAACGTCGA
63 GGATACTCCAACCCCGTTATTTCCGAGGAGATACTCCAA-CCC-GATTT-TTTTCAAAACATCGA
* *
3190739 TTTTTCACGATCGGGGATACTCCAACCCCGTTATTTCTGAGGAGATAC-TCAAACCCCGGTTTTA
125 TTTTTCACAATC-GGGATACTCCAACCCCGTTATTTCTGAGG-GATACTTC-AACCCCGATTTTA
* * *
3190803 TTTTCAAAACACCAATTTTTCACAATCAGGGATACTCCAACCCCG
187 TTTTCAAAATATCAATTTTTCACAATCAGGGATACTCCAACCTCG
* *
3190848 TTATTTCCGAAGG-GATACTCCAACCTCGGTTTTATCTCTAAAA
1 TTATTT-CG-AGGAGATACTCCAACCCCGGTTTTATTTCTAAAA
3190891 TATTAAACTT
Statistics
Matches: 441, Mismatches: 53, Indels: 45
0.82 0.10 0.08
Matches are distributed among these distances:
235 3 0.01
236 200 0.45
237 110 0.25
238 118 0.27
239 10 0.02
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (231 bp):
TTATTTCGAGGAGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTCTACAATCGGGGA
TACTCCAACCCCGTTATTTCCGAGGAGATACTCCAACCCGATTTTTTTCAAAACATCGATTTTTC
ACAATCGGGATACTCCAACCCCGTTATTTCTGAGGGATACTTCAACCCCGATTTTATTTTCAAAA
TATCAATTTTTCACAATCAGGGATACTCCAACCTCG
Found at i:3192101 original size:38 final size:38
Alignment explanation
Indices: 3192050--3192125 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
3192040 TTTATTCGGA
3192050 CAATTTCCATTCATGTGAGAGATTATTAGATATCAATG
1 CAATTTCCATTCATGTGAGAGATTATTAGATATCAATG
*
3192088 CAATTTCCATTCATGTGGGAGATTATTAGATATCAATG
1 CAATTTCCATTCATGTGAGAGATTATTAGATATCAATG
3192126 GCCTATTATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (38 bp):
CAATTTCCATTCATGTGAGAGATTATTAGATATCAATG
Found at i:3192353 original size:13 final size:13
Alignment explanation
Indices: 3192335--3192391 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
3192325 CATAAAGTGT
3192335 TGTATCGATACAA
1 TGTATCGATACAA
3192348 TGTATCGATACATAA
1 TGTATCGATAC--AA
3192363 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
3192380 TGTATCGATACA
1 TGTATCGATACA
3192392 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3192370 original size:32 final size:32
Alignment explanation
Indices: 3192315--3192412 Score: 178
Period size: 32 Copynumber: 3.0 Consensus size: 32
3192305 TTCAATGATT
3192315 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACAT-AAGTGTTGTATCGATACAA
3192348 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
3192380 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
3192412 T
1 T
3192413 TTAAGCTACT
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
32 51 0.80
33 13 0.20
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:3192372 original size:19 final size:18
Alignment explanation
Indices: 3192313--3192410 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
3192303 ATTTCAATGA
3192313 TTTGTATCGATACATAAAG
1 TTTGTATCGATACAT-AAG
3192332 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
3192348 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
3192364 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
3192380 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
3192396 TTTTGTATCGATACA
1 -TTTGTATCGATACA
3192411 ATTTAAGCTA
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
15 4 0.06
17 4 0.06
19 24 0.36
20 12 0.18
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:3192471 original size:13 final size:13
Alignment explanation
Indices: 3192453--3192477 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3192443 ATTACTCAAA
3192453 TGTATCGATACAT
1 TGTATCGATACAT
3192466 TGTATCGATACA
1 TGTATCGATACA
3192478 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3196083 original size:17 final size:18
Alignment explanation
Indices: 3196061--3196100 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
3196051 TGGTTAAGAT
*
3196061 ATTTTATCTAGTT-TCAA
1 ATTTTAACTAGTTATCAA
*
3196078 ATTTTAACTAGTTATCCA
1 ATTTTAACTAGTTATCAA
3196096 ATTTT
1 ATTTT
3196101 TAAATTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.30, C:0.12, G:0.05, T:0.53
Consensus pattern (18 bp):
ATTTTAACTAGTTATCAA
Found at i:3196639 original size:2 final size:2
Alignment explanation
Indices: 3196632--3196663 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
3196622 TGATTCTAGA
3196632 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3196664 TCACTAGTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3197353 original size:54 final size:54
Alignment explanation
Indices: 3197288--3197461 Score: 159
Period size: 54 Copynumber: 3.3 Consensus size: 54
3197278 ATACTTTTAA
3197288 AAATTTAAAATTAATAAAATTATCTTATTTAAAATGTAATTTTATTAATTTATTT
1 AAATTTAAAATTAATAAAATTAT-TTATTTAAAATGTAATTTTATTAATTTATTT
* * ** * * *
3197343 AAATTT-AAATTAAT-AAA-TAGTTA---AAAATGGAGCTATATT-ATATTAATC
1 AAATTTAAAATTAATAAAATTATTTATTTAAAATGTAATTTTATTAAT-TTATTT
** *
3197391 AGTTTTAAAATTAATAAAATT-TTTATTTAAATATGTAATTTTAATAATTTATTT
1 AAATTTAAAATTAATAAAATTATTTATTTAAA-ATGTAATTTTATTAATTTATTT
*
3197445 AAATTT-AATTTAATAAA
1 AAATTTAAAATTAATAAA
3197462 TATTTAAAAA
Statistics
Matches: 90, Mismatches: 20, Indels: 20
0.69 0.15 0.15
Matches are distributed among these distances:
47 2 0.02
48 20 0.22
49 8 0.09
50 6 0.07
51 4 0.04
52 2 0.02
53 16 0.18
54 24 0.27
55 8 0.09
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (54 bp):
AAATTTAAAATTAATAAAATTATTTATTTAAAATGTAATTTTATTAATTTATTT
Found at i:3197466 original size:48 final size:47
Alignment explanation
Indices: 3197313--3197470 Score: 129
Period size: 48 Copynumber: 3.2 Consensus size: 47
3197303 AAAATTATCT
*
3197313 TATTTAAAATGTAATTTTATTAATTTATTTAAATTTAAATTAATAAA
1 TATTTAAAATGTAATTTTATTAATTTATTTAAATTTAATTTAATAAA
* * * * ** ***
3197360 TAGTTAAAAATGGAGCTATATTATATTAA-TCAGTTTTAAAATTAATAAAATTTT
1 TA-TTTAAAAT---G-TA-ATTTTATTAATTTA--TTTAAATTTAATTTAATAAA
*
3197414 TATTTAAATATGTAATTTTAATAATTTATTTAAATTTAATTTAATAAA
1 TATTTAAA-ATGTAATTTTATTAATTTATTTAAATTTAATTTAATAAA
3197462 TATTTAAAA
1 TATTTAAAA
3197471 ATAAAATCAA
Statistics
Matches: 81, Mismatches: 20, Indels: 20
0.67 0.17 0.17
Matches are distributed among these distances:
47 3 0.04
48 29 0.36
49 8 0.10
50 4 0.05
51 2 0.02
52 4 0.05
53 14 0.17
54 17 0.21
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.48
Consensus pattern (47 bp):
TATTTAAAATGTAATTTTATTAATTTATTTAAATTTAATTTAATAAA
Found at i:3197468 original size:22 final size:26
Alignment explanation
Indices: 3197414--3197469 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
3197404 ATAAAATTTT
*
3197414 TATTTAAATATGTAATTTTAATAATT
1 TATTTAAATATGTAATTTTAATAATA
3197440 TATTTAAAT-T-TAA-TTTAATAA-A
1 TATTTAAATATGTAATTTTAATAATA
3197462 TATTTAAA
1 TATTTAAA
3197470 AATAAAATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 8 0.28
23 8 0.28
24 3 0.10
25 1 0.03
26 9 0.31
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (26 bp):
TATTTAAATATGTAATTTTAATAATA
Found at i:3202679 original size:22 final size:23
Alignment explanation
Indices: 3202653--3202706 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
3202643 ATAATACATG
3202653 TTATTAATCAGT-TACTATTATA
1 TTATTAATCAGTGTACTATTATA
* * *
3202675 TTATTATTC-TTGTACTCTTATA
1 TTATTAATCAGTGTACTATTATA
*
3202697 TTATTCATCA
1 TTATTAATCA
3202707 TTTATTAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.30, C:0.13, G:0.04, T:0.54
Consensus pattern (23 bp):
TTATTAATCAGTGTACTATTATA
Found at i:3206002 original size:22 final size:23
Alignment explanation
Indices: 3205976--3206029 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
3205966 ATAATACATG
3205976 TTATTAATCAGT-TACTATTATA
1 TTATTAATCAGTGTACTATTATA
* * *
3205998 TTATTATTC-TTGTACTCTTATA
1 TTATTAATCAGTGTACTATTATA
*
3206020 TTATTCATCA
1 TTATTAATCA
3206030 TTTATTAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.30, C:0.13, G:0.04, T:0.54
Consensus pattern (23 bp):
TTATTAATCAGTGTACTATTATA
Found at i:3207440 original size:29 final size:29
Alignment explanation
Indices: 3207390--3207445 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
3207380 ATGATAATAT
3207390 TTTTAATTAAAAACATAAAAATTATTTATC
1 TTTTAATTAAAAACATAAAAATT-TTTATC
* * *
3207420 TTTT-ATTAATAACCTATAAATTTTTA
1 TTTTAATTAAAAACATAAAAATTTTTA
3207446 CAATCATGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 4 0.17
29 15 0.65
30 4 0.17
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (29 bp):
TTTTAATTAAAAACATAAAAATTTTTATC
Found at i:3208571 original size:22 final size:22
Alignment explanation
Indices: 3208545--3208586 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
3208535 ATTAAAAAAT
3208545 TATTTTTAT-ATTAATATTTATA
1 TATTTTTATAATTAA-ATTTATA
3208567 TATTTTTATAATTAAATTTA
1 TATTTTTATAATTAAATTTA
3208587 AATAAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (22 bp):
TATTTTTATAATTAAATTTATA
Done.