Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold66
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4623749
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 850 characters in sequence are not A, C, G, or T
File 24 of 26
Found at i:4180043 original size:2 final size:2
Alignment explanation
Indices: 4179989--4180026 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
4179979 CGTCATTAAC
* *
4179989 TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA CA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4180027 ATTTAAGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:4180840 original size:28 final size:30
Alignment explanation
Indices: 4180781--4180845 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
4180771 ATAAAATTTA
* *
4180781 TATAAATATAAAAAATATCATAAATACAAT
1 TATAAATATAAAAAATATCACAAACACAAT
4180811 TATAACATA-AAAAAATAT-ACAAACAC-AT
1 TATAA-ATATAAAAAATATCACAAACACAAT
4180839 TATAAAT
1 TATAAAT
4180846 TATATAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 2 0.06
28 7 0.22
29 6 0.19
30 14 0.44
31 3 0.09
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.28
Consensus pattern (30 bp):
TATAAATATAAAAAATATCACAAACACAAT
Found at i:4183814 original size:3 final size:3
Alignment explanation
Indices: 4183806--4183830 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
4183796 TGCCAATTCA
4183806 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
4183831 CCACAAGGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:4184986 original size:3 final size:3
Alignment explanation
Indices: 4184978--4185032 Score: 83
Period size: 3 Copynumber: 18.3 Consensus size: 3
4184968 TATTTAATTG
* *
4184978 AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
4185026 AGT AAT A
1 AAT AAT A
4185033 GCATAAATCA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:4188805 original size:3 final size:3
Alignment explanation
Indices: 4188799--4188829 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
4188789 AACAACAACC
4188799 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
4188830 CTAGTCATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:4189921 original size:399 final size:399
Alignment explanation
Indices: 4189202--4189933 Score: 960
Period size: 399 Copynumber: 1.8 Consensus size: 399
4189192 GAATGCTGAA
* *
4189202 AAAATGATCAGTAATAGCAGCTATGAAACTATTGACAGGAAAATGAATGATATATTACATTTTTA
1 AAAATGATCAGTAATAGCA-CTAAGAAACTATTGACAGGAAAATGAAAGATATATTACATTTTTA
* *
4189267 AAAGCATAATGGTAACAATTAGACCATTTCTCTGTTATAAGATCATGTTTAAGTGATTTCAAGTT
65 AAAGCATAATGCTAACAATTAGACCATTTCTCTGTTATAAGATCATGATTAAGTGATTTCAAGTT
* * * * *
4189332 CTACTTTCCAAGCAGATACCATCATTGAAAATATTATGGAGTTGCAATAAATAGTATCTCAATGT
130 CTACTTTCCAAGCAGATACCAGCACTGAAAATATTATGGAGTAGCAATAAATAATATCTCAATGC
* * * * * *
4189397 TTGAACATTGGGATATAACAATGTTATATACACAACTTTAAAGAACTTTATACCTAAAATAAACA
195 CTGAACATTGAGATATAACAATGTTAAATACACAAATTTAAAGAACCTCATACCTAAAATAAACA
* * * *
4189462 TTAGAAGTTGCTTCATGTTTTCACACTCTAAACTTATGGAGAGAAATTAAATAAATAAATTGATC
260 TCAGAAGTTACTTCATGTTTTCACACTATAAACTTATGGAGAGAAACTAAATAAATAAATTGATC
4189527 ACAGATGGCCCAATATTTTAAAAACTATCCATCAAGAACCAAAAGGCATCTTATCAAAACCAGGA
325 ACAGATGGCCCAATATTTTAAAAACTATCCATCAAGAACCAAAAGGCATCTTATCAAAACCAGGA
4189592 CATGTTGCTT
390 CATGTTGCTT
* * * * *
4189602 AAAATGATGAGTAGTAGC-CTAAGAACACTATTGAGAGGAAAATGAAAGATTTATTATATTTTTA
1 AAAATGATCAGTAATAGCACTAAGAA-ACTATTGACAGGAAAATGAAAGATATATTACATTTTTA
*
4189666 AAAGCATAATGCTAACAATTAGACCATTTCTTTCTGTTATAA-ACTTATGATTAAGTGATTTCAA
65 AAAGCATAATGCTAACAATTAGACCATTTC--TCTGTTATAAGA-TCATGATTAAGTGATTTCAA
* *
4189730 GTTCTGCATTTCCATGCAGATACCAGCACTG-AAATAATTA-GGAAGTAGCAATAAATAAT-TCT
127 GTTCTAC-TTTCCAAGCAGATACCAGCACTGAAAAT-ATTATGG-AGTAGCAATAAATAATATCT
* * * * * *
4189792 CGATGCCTGAACTTTTAGATATAACCATGTTAAATATACAAATTT-AAGAACCTCCTACCTAAAA
189 CAATGCCTGAACATTGAGATATAACAATGTTAAATACACAAATTTAAAGAACCTCATACCTAAAA
** * * **
4189856 TAAACATCAGAAGTTACTTCCAT-TTTTCATTCTATAAACTTTAT-G-GAGACACTGAATGCATA
254 TAAACATCAGAAGTTACTT-CATGTTTTCACACTATAAAC-TTATGGAGAGAAACTAAATAAATA
4189918 AATTGATCACAGATGG
317 AATTGATCACAGATGG
4189934 GACAGACCTG
Statistics
Matches: 284, Mismatches: 39, Indels: 19
0.83 0.11 0.06
Matches are distributed among these distances:
398 6 0.02
399 91 0.32
400 64 0.23
401 85 0.30
402 38 0.13
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.32
Consensus pattern (399 bp):
AAAATGATCAGTAATAGCACTAAGAAACTATTGACAGGAAAATGAAAGATATATTACATTTTTAA
AAGCATAATGCTAACAATTAGACCATTTCTCTGTTATAAGATCATGATTAAGTGATTTCAAGTTC
TACTTTCCAAGCAGATACCAGCACTGAAAATATTATGGAGTAGCAATAAATAATATCTCAATGCC
TGAACATTGAGATATAACAATGTTAAATACACAAATTTAAAGAACCTCATACCTAAAATAAACAT
CAGAAGTTACTTCATGTTTTCACACTATAAACTTATGGAGAGAAACTAAATAAATAAATTGATCA
CAGATGGCCCAATATTTTAAAAACTATCCATCAAGAACCAAAAGGCATCTTATCAAAACCAGGAC
ATGTTGCTT
Found at i:4190556 original size:58 final size:58
Alignment explanation
Indices: 4190465--4190582 Score: 200
Period size: 58 Copynumber: 2.0 Consensus size: 58
4190455 AAGATATAAA
* *
4190465 AACAATGTGAGAGAATGCATACATGCAATACTAATTACTGTTTAATGACCAACAAAAG
1 AACAATGTGAGAGAATGCATACATGCAAAACTAATTACAGTTTAATGACCAACAAAAG
**
4190523 AACAATGTGAGAGAATGTTTACATGCAAAACTAATTACAGTTTAATGACCAACAAAAG
1 AACAATGTGAGAGAATGCATACATGCAAAACTAATTACAGTTTAATGACCAACAAAAG
4190581 AA
1 AA
4190583 AACATTCAAC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.47, C:0.14, G:0.15, T:0.24
Consensus pattern (58 bp):
AACAATGTGAGAGAATGCATACATGCAAAACTAATTACAGTTTAATGACCAACAAAAG
Found at i:4191771 original size:14 final size:14
Alignment explanation
Indices: 4191752--4191784 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
4191742 AATTCGACTT
4191752 TTTTTTCGTTTT-TA
1 TTTTTTC-TTTTCTA
4191766 TTTTTTCTTTTCTA
1 TTTTTTCTTTTCTA
4191780 TTTTT
1 TTTTT
4191785 CTCTACGATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.06, C:0.09, G:0.03, T:0.82
Consensus pattern (14 bp):
TTTTTTCTTTTCTA
Found at i:4192763 original size:48 final size:48
Alignment explanation
Indices: 4192687--4192831 Score: 263
Period size: 48 Copynumber: 3.0 Consensus size: 48
4192677 TATTCATGAC
* *
4192687 TAAGCACAGGGGATAGAATCCCACGGCATGGCGTCATCAATACAAGAT
1 TAAGCACAGGGGATAGAATCCCATGGCATGGCATCATCAATACAAGAT
4192735 TAAGCACAGGGGATAGAATCCCATGGCATGGCATCATCAATACAAGAT
1 TAAGCACAGGGGATAGAATCCCATGGCATGGCATCATCAATACAAGAT
*
4192783 TAAGCACAGGGGATAGCATCCCATGGCATGGCATCATCAATACAAGAT
1 TAAGCACAGGGGATAGAATCCCATGGCATGGCATCATCAATACAAGAT
4192831 T
1 T
4192832 TCGTCCCAAA
Statistics
Matches: 94, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 94 1.00
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (48 bp):
TAAGCACAGGGGATAGAATCCCATGGCATGGCATCATCAATACAAGAT
Found at i:4193146 original size:19 final size:19
Alignment explanation
Indices: 4193124--4193160 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
4193114 TTTTAAAAAT
4193124 ATTTATTATTAATAAATAA
1 ATTTATTATTAATAAATAA
4193143 ATTTATTATTAATAAATA
1 ATTTATTATTAATAAATA
4193161 TAATATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTTATTATTAATAAATAA
Found at i:4193876 original size:72 final size:72
Alignment explanation
Indices: 4193759--4193907 Score: 244
Period size: 72 Copynumber: 2.1 Consensus size: 72
4193749 CGTCTAGGGA
* *
4193759 GGGAATTAATCTAATCCTGTATTGATTATTGTTGTTGTCATTGTTCTTAGATGCAAGGGAGGTTC
1 GGGAATTAATCTAATCCTATATTGATTATTGTTGTTGTCATTGTTCTTAAATGCAAGGGAGGTTC
4193824 GTTGTCG
66 GTTGTCG
* * *
4193831 GGGAATTAGTCTAATCCTATTTTGATTATTGTTGTTGTCATTGTTCTTAAATGCAAGGGAGGTTT
1 GGGAATTAATCTAATCCTATATTGATTATTGTTGTTGTCATTGTTCTTAAATGCAAGGGAGGTTC
*
4193896 GTTGTTG
66 GTTGTCG
4193903 GGGAA
1 GGGAA
4193908 AACCTCATAT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.21, C:0.09, G:0.27, T:0.42
Consensus pattern (72 bp):
GGGAATTAATCTAATCCTATATTGATTATTGTTGTTGTCATTGTTCTTAAATGCAAGGGAGGTTC
GTTGTCG
Found at i:4194828 original size:6 final size:6
Alignment explanation
Indices: 4194817--4194855 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
4194807 GACCAGGTTT
* *
4194817 AATTTA AATTTA AATTTA AATTTT AATTCA AA-TTA AATT
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATT
4194856 ACTAATTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 4 0.14
6 24 0.86
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (6 bp):
AATTTA
Found at i:4195215 original size:17 final size:16
Alignment explanation
Indices: 4195189--4195232 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 16
4195179 TAGACCTTGT
4195189 TAAATAAATATTTATG
1 TAAATAAATATTTATG
*
4195205 TAAATTAAATATTTATCC
1 TAAA-TAAATATTTAT-G
4195223 TAAATAAATA
1 TAAATAAATA
4195233 ACACAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 4 0.16
17 17 0.68
18 4 0.16
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (16 bp):
TAAATAAATATTTATG
Found at i:4198787 original size:19 final size:19
Alignment explanation
Indices: 4198727--4198787 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 19
4198717 GCAAAGTAGC
*
4198727 TTTGTATCGATACAACACT-
1 TTTGTATCGATACAA-ATTG
* *
4198746 TATGTATCGATACATTTATTG
1 TTTGTATCGATACA--AATTG
4198767 TTTGTATCGATACAAATTG
1 TTTGTATCGATACAAATTG
4198786 TT
1 TT
4198788 GAAATTCAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
19 19 0.56
20 2 0.06
21 13 0.38
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.44
Consensus pattern (19 bp):
TTTGTATCGATACAAATTG
Found at i:4200535 original size:19 final size:21
Alignment explanation
Indices: 4200483--4200537 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
4200473 AATTTCAATA
*
4200483 ATTTGTATCGATACATTCAGT
1 ATTTGTATCGATACATTAAGT
** *
4200504 AAATGTATTGATACA-TAAGT
1 ATTTGTATCGATACATTAAGT
4200524 -TTTGTATCGATACA
1 ATTTGTATCGATACA
4200538 ATATATCGCT
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
19 11 0.41
20 4 0.15
21 12 0.44
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.40
Consensus pattern (21 bp):
ATTTGTATCGATACATTAAGT
Found at i:4200587 original size:13 final size:13
Alignment explanation
Indices: 4200569--4200596 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
4200559 GCCAAGGAAA
4200569 TGTATCGATACAT
1 TGTATCGATACAT
4200582 TGTATCGATACAT
1 TGTATCGATACAT
4200595 TG
1 TG
4200597 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4203010 original size:51 final size:51
Alignment explanation
Indices: 4202955--4203140 Score: 257
Period size: 51 Copynumber: 3.6 Consensus size: 51
4202945 TAAGTTTTTC
*
4202955 AATTTTTCATAATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACT
1 AATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACT
*
4203006 AATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTT-TCAAAACACC
1 AATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTCT-AAAACACT
* ** * * *
4203057 AATTTTCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAAACACT
1 AATTTTTC-ACAATCGGGGATACTCCAACCCCGGTTTTA-TTTCTAAAACACT
*
4203110 AATTTTTCACAATCGAGGATACTCCAACCCC
1 AATTTTTCACAATCGGGGATACTCCAACCCC
4203141 ATTAATCATC
Statistics
Matches: 117, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
50 1 0.01
51 54 0.46
52 45 0.38
53 17 0.15
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.33
Consensus pattern (51 bp):
AATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACT
Found at i:4203095 original size:52 final size:52
Alignment explanation
Indices: 4202955--4203140 Score: 268
Period size: 52 Copynumber: 3.6 Consensus size: 52
4202945 TAAGTTTTTC
* *
4202955 AATTTTTCATAATCGGGGATACTCCAACCCCGGTTTTA-TTTCTAAAACACT
1 AATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAAACACT
*
4203006 AATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACC
1 AATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAAACACT
* ** * *
4203057 AATTTTCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAAACACT
1 AATTTTTC-ACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAAACACT
*
4203110 AATTTTTCACAATCGAGGATACTCCAACCCC
1 AATTTTTCACAATCGGGGATACTCCAACCCC
4203141 ATTAATCATC
Statistics
Matches: 119, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
51 51 0.43
52 54 0.45
53 14 0.12
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.33
Consensus pattern (52 bp):
AATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAAACACT
Found at i:4203329 original size:79 final size:80
Alignment explanation
Indices: 4203148--4203330 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 80
4203138 CCCATTAATC
* ** * *
4203148 ATCGAGGATACTCCAACCCTGTTATTTTCGAGGGGATACTCCAACCCCCGGCTTTATTCCTAAAA
1 ATCGGGGATACTCCAACCCCATTATTTTCGAAGGGATACTCCAACCCCCGACTTTATTCCTAAAA
* *
4203213 TATTGATTTCTCATA
66 CATCGATTTCTCATA
* * * **
4203228 ATCGGGGATACTCCAACTCCATTATTTTC-ACAGGGATACTCCAA-CCTCGATTTTATTTTTAAA
1 ATCGGGGATACTCCAACCCCATTATTTTCGA-AGGGATACTCCAACCCCCGACTTTATTCCTAAA
4203291 ACATCGATTT-TCTATA
65 ACATCGATTTCTC-ATA
4203307 ATCGGGGATACTCCAACCCCATTA
1 ATCGGGGATACTCCAACCCCATTA
4203331 CTATCTCCAA
Statistics
Matches: 88, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
78 2 0.02
79 49 0.56
80 37 0.42
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (80 bp):
ATCGGGGATACTCCAACCCCATTATTTTCGAAGGGATACTCCAACCCCCGACTTTATTCCTAAAA
CATCGATTTCTCATA
Found at i:4205388 original size:4 final size:4
Alignment explanation
Indices: 4205379--4205407 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
4205369 TATTTTGAGG
4205379 TATT TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT T
4205408 GTTTTGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:4215733 original size:9 final size:9
Alignment explanation
Indices: 4215719--4215773 Score: 62
Period size: 9 Copynumber: 6.4 Consensus size: 9
4215709 ATTCTCTTCT
4215719 AAAAAAC-A
1 AAAAAACAA
4215727 AAAAAA-AA
1 AAAAAACAA
*
4215735 AACAAA-AA
1 AAAAAACAA
4215743 AAAAAACAA
1 AAAAAACAA
4215752 AAAAAACAA
1 AAAAAACAA
* *
4215761 AACAAAGAA
1 AAAAAACAA
4215770 AAAA
1 AAAA
4215774 GAGAGAAAAG
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
8 19 0.47
9 21 0.52
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (9 bp):
AAAAAACAA
Found at i:4215736 original size:12 final size:12
Alignment explanation
Indices: 4215719--4215773 Score: 83
Period size: 12 Copynumber: 4.3 Consensus size: 12
4215709 ATTCTCTTCT
4215719 AAAAAACAAAAA
1 AAAAAACAAAAA
4215731 AAAAAACAAAAA
1 AAAAAACAAAAA
4215743 AAAAAACAAAAAA
1 AAAAAAC-AAAAA
4215756 AACAAAACAAAGAA
1 AA-AAAACAAA-AA
4215770 AAAA
1 AAAA
4215774 GAGAGAAAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
12 19 0.47
13 12 0.30
14 9 0.22
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (12 bp):
AAAAAACAAAAA
Found at i:4215788 original size:1 final size:1
Alignment explanation
Indices: 4215719--4215773 Score: 56
Period size: 1 Copynumber: 55.0 Consensus size: 1
4215709 ATTCTCTTCT
* * * * * *
4215719 AAAAAACAAAAAAAAAAACAAAAAAAAAAACAAAAAAAACAAAACAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
4215774 GAGAGAAAAG
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:4215788 original size:26 final size:25
Alignment explanation
Indices: 4215719--4215773 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 25
4215709 ATTCTCTTCT
4215719 AAAAAAC-AAAAAAAAAAACAAAAA
1 AAAAAACAAAAAAAAAAAACAAAAA
*
4215743 AAAAAACAAAAAAAACAAAACAAAGA
1 AAAAAACAAAAAAAA-AAAACAAAAA
4215769 AAAAA
1 AAAAA
4215774 GAGAGAAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 7 0.25
25 7 0.25
26 14 0.50
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (25 bp):
AAAAAACAAAAAAAAAAAACAAAAA
Found at i:4216858 original size:55 final size:55
Alignment explanation
Indices: 4216774--4217000 Score: 289
Period size: 55 Copynumber: 4.0 Consensus size: 55
4216764 GATGCCTTCT
*
4216774 CCTTTTAAAGCCCACAAAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACG
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACG
*
4216829 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTT--TAGTCCTCAAAGAGCAGGATG
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACG
* * * *
4216883 CCTTTCAAAGCCCACACGAGTTGGTGGCA-TTTCTCAGTCCTCAAAGAGCAGGATG
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCT-AGTCCTCAAAGAGCAGGACG
* *
4216938 CCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACG
1 CC---T--TTT-AAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACG
4216999 CC
1 CC
4217001 CTCTCCCTTC
Statistics
Matches: 153, Mismatches: 8, Indels: 16
0.86 0.05 0.09
Matches are distributed among these distances:
52 2 0.01
54 48 0.31
55 50 0.33
56 3 0.02
58 1 0.01
60 2 0.01
61 44 0.29
62 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (55 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACG
Found at i:4216982 original size:61 final size:58
Alignment explanation
Indices: 4216747--4216996 Score: 300
Period size: 61 Copynumber: 4.3 Consensus size: 58
4216737 TTCCGCTTTT
* *
4216747 CAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACAAAAGTTGGTGGCACTTCC
1 CAGTCCTCAAAGAGCAGGATG-C--CTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCC
* *
4216808 TAGTCCTCAAAGAGCAGGACGCCT--TTT-AAAGCCCACACAAGTTGGTGGCACCTT--
1 CAGTCCTCAAAGAGCAGGATGCCTCCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCC
* * * *
4216862 TAGTCCTCAAAGAGCAGGATG---CCTTTCAAAGCCCACACGAGTTGGTGGCATTTCT
1 CAGTCCTCAAAGAGCAGGATGCCTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCC
*
4216917 CAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACTTCC
1 CAGTCCTCAAAGAGCAGGATGCC---TCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCC
4216978 CAGTCCTCAAAGAGCAGGA
1 CAGTCCTCAAAGAGCAGGA
4216997 CGCCCTCTCC
Statistics
Matches: 168, Mismatches: 9, Indels: 24
0.84 0.04 0.12
Matches are distributed among these distances:
53 5 0.03
54 42 0.25
55 42 0.25
56 6 0.04
58 2 0.01
60 1 0.01
61 70 0.42
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (58 bp):
CAGTCCTCAAAGAGCAGGATGCCTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCC
Found at i:4217102 original size:54 final size:53
Alignment explanation
Indices: 4217014--4217267 Score: 294
Period size: 55 Copynumber: 4.6 Consensus size: 53
4217004 TCCCTTCACC
* *
4217014 CTTTAGTCCTCAAAGAGCAAGACGCGTTTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
4217067 CATTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCA
1 C-TTTAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * **
4217121 TTTTCCAGTCCTCAAAGAGCAAGACGCATTTCAAAGCCCACATGAGTTGGTGGCA
1 CTTT--AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
4217176 CTTCTCAGTCCTCAAAGAGCAGGATGCCTTTTCGTTTTAAAGCCCACACAAGTTGGTGGCA
1 CTT-T-AGTCCTCAAAGAGCAAGACGCC-TTTC-----AAAGCCCACACAAGTTGGTGGCA
4217237 CCTTCTAGTCCTCAAAGAGCAAGACG-CTTTC
1 -CTT-TAGTCCTCAAAGAGCAAGACGCCTTTC
4217268 TCTTTTCAAC
Statistics
Matches: 174, Mismatches: 16, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
53 4 0.02
54 48 0.28
55 68 0.39
56 5 0.03
59 4 0.02
60 1 0.01
61 39 0.22
62 5 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (53 bp):
CTTTAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:4217137 original size:148 final size:151
Alignment explanation
Indices: 4216858--4217147 Score: 417
Period size: 148 Copynumber: 1.9 Consensus size: 151
4216848 GTTGGTGGCA
* * * *
4216858 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACGAGTTGGTGGCATTTCTCAGTCC
1 CCTTTAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCAATTCTCAGTCC
*
4216923 TCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACTTCCCAGTCCTCAA
66 TCAAAGAGCAGGA--CC--TGCCTTTCAAAGCCCACACGAGTTGGTGGCACTTCCCAGTCCTCAA
*
4216988 AGAGCAGGACGCCCTCTCCCTTCAC
127 AGAGCAAGACGCCCTCTCCCTTCAC
* *
4217013 CCTTTAGTCCTCAAAGAGCAAGACGCGTTTTAAAGCCCACACAAGTTGGTGGCACATT-T-AGTC
1 CCTTTAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-ATTCTCAGTC
* *
4217076 CTCAAAGAGCAGGA-C-GCCTTTCAAAGCCCACACGAGTTGGTGGCATTTTCCAGTCCTCAAAGA
65 CTCAAAGAGCAGGACCTGCCTTTCAAAGCCCACACGAGTTGGTGGCACTTCCCAGTCCTCAAAGA
4217139 GCAAGACGC
130 GCAAGACGC
4217148 ATTTCAAAGC
Statistics
Matches: 124, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
148 53 0.43
151 1 0.01
154 18 0.15
155 50 0.40
156 2 0.02
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (151 bp):
CCTTTAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCAATTCTCAGTCC
TCAAAGAGCAGGACCTGCCTTTCAAAGCCCACACGAGTTGGTGGCACTTCCCAGTCCTCAAAGAG
CAAGACGCCCTCTCCCTTCAC
Found at i:4217249 original size:264 final size:263
Alignment explanation
Indices: 4216774--4217471 Score: 981
Period size: 264 Copynumber: 2.6 Consensus size: 263
4216764 GATGCCTTCT
*
4216774 CCTTTTAAAGCCCACAAAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCCTTTTAAAG
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTT--TAGTCCTCAAAGAGCAGGACGCCTTTTAAAG
* * *
4216839 CCCACACAAGTTGGTGGCACCTTT--AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACGA
64 CCCACACGAGTTGGTGGCA-CTTTCCAGTCCTCAAAGAGCAGGACGCATTTCAAAGCCCACACGA
* *
4216902 GTTGGTGGCATTTCTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACGAGTTG
128 GTTGGTGGCACTTCTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTG
* *
4216967 GTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCCTCTCCCTTCACCCTTTAGTCCTCAAAGAGC
193 GTGGCACTTCCCAGTCCTCAAAGAGCAAGACGCCCTCTCCCTTCAACCTTTAGTCCTCAAAGAGC
4217032 AAGACG
258 AAGACG
* *
4217038 CGTTTTAAAGCCCACACAAGTTGGTGGCACATTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGC
1 CCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGC
* * *
4217103 CCACACGAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAAGACGCATTTCAAAGCCCACATGAGT
65 CCACACGAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACGCATTTCAAAGCCCACACGAGT
* *
4217168 TGGTGGCACTTCTCAGTCCTCAAAGAGCAGGATGCCTTTTCGTTTTAAAGCCCACACAAGTTGGT
130 TGGTGGCACTTCTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGT
* ** **
4217233 GGCACCTT-CTAGTCCTCAAAGAGCAAGACGCTTTCTCTTTTCAACCTTTAGTCCTCAAAGAGCA
195 GGCA-CTTCCCAGTCCTCAAAGAGCAAGACGCCCTCTCCCTTCAACCTTTAGTCCTCAAAGAGCA
*
4217297 GGACG
259 AGACG
*
4217302 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAG
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-C-TTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAG
** * *
4217367 CCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCC
64 CCCACACGAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACG-------CATTTCAAAGCCC
* *
4217432 ACACAAGTTGGTGGCAC-TCTGTAGTCCTCAAAGAGCAGGA
122 ACACGAGTTGGTGGCACTTCT-CAGTCCTCAAAGAGCAGGA
4217472 CCCACTTTAT
Statistics
Matches: 387, Mismatches: 34, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
262 3 0.01
263 48 0.12
264 210 0.54
265 78 0.20
271 3 0.01
272 45 0.12
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (263 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCC
CACACGAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACGCATTTCAAAGCCCACACGAGTT
GGTGGCACTTCTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTG
GCACTTCCCAGTCCTCAAAGAGCAAGACGCCCTCTCCCTTCAACCTTTAGTCCTCAAAGAGCAAG
ACG
Found at i:4217256 original size:116 final size:108
Alignment explanation
Indices: 4217013--4217468 Score: 415
Period size: 109 Copynumber: 4.2 Consensus size: 108
4217003 CTCCCTTCAC
*
4217013 CCTT-TAGTCCTCAAAGAGCAAGACGCGTTTTAAAGCCCACACAAGTTGGTGGCACATTTAGTCC
1 CCTTCTAGTCCTCAAAGAGCAAGACGC-TTTCAAAGCCCACACAAGTTGGTGGCACATTTAGTCC
*
4217077 TCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCA
65 TCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
** * **
4217121 TTTTCCAGTCCTCAAAGAGCAAGACGCATTTCAAAGCCCACATGAGTTGGTGGCAC-TTCTCAGT
1 CCTTCTAGTCCTCAAAGAGCAAGACGC-TTTCAAAGCCCACACAAGTTGGTGGCACATT-T-AGT
*
4217185 CCTCAAAGAGCAGGATGCCTTTTCGTTTTAAAGCCCACACAAGTTGGTGGCA
63 CCTCAAAGAGCAGGACGCC-TTTC-----AAAGCCCACACAAGTTGGTGGCA
* *** *
4217237 CCTTCTAGTCCTCAAAGAGCAAGACGCTTT---------CTC---TT--TTCAACCTTTAGTCCT
1 CCTTCTAGTCCTCAAAGAGCAAGACGCTTTCAAAGCCCACACAAGTTGGTGGCACATTTAGTCCT
4217288 CAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
66 CAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * * **
4217331 CCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACGAGTTGGTGGCACCCTCCAGTC
1 CCTTCTAGTCCTCAAAGAGCAAGACG-CTTTCAAAGCCCACACAAGTTGGTGGCA-CATTTAGTC
*
4217396 CTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
64 CTCAAAGAGCAGGACG-C-----C-TTTCAAAGCCCACACAAGTTGGTGGCA
*
4217448 -CTCTGTAGTCCTCAAAGAGCA
1 CCT-TCTAGTCCTCAAAGAGCA
4217469 GGACCCACTT
Statistics
Matches: 286, Mismatches: 28, Indels: 59
0.77 0.08 0.16
Matches are distributed among these distances:
94 47 0.16
95 4 0.01
99 4 0.01
100 21 0.07
101 4 0.01
102 2 0.01
103 2 0.01
104 2 0.01
106 1 0.00
107 2 0.01
108 4 0.01
109 49 0.17
110 43 0.15
111 5 0.02
115 3 0.01
116 49 0.17
117 44 0.15
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (108 bp):
CCTTCTAGTCCTCAAAGAGCAAGACGCTTTCAAAGCCCACACAAGTTGGTGGCACATTTAGTCCT
CAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:4217328 original size:210 final size:210
Alignment explanation
Indices: 4217069--4217468 Score: 630
Period size: 210 Copynumber: 1.9 Consensus size: 210
4217059 TGGTGGCACA
*
4217069 TTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCA-TTTTCCAGTCCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTT--AGTCCT
* *
4217133 CAAAGAGCAAGACGCATTTCAAAGCCCACATGAGTTGGTGGCA-CTTCTCAGTCCTCAAAGAGCA
64 CAAAGAGCAAGACGCATTTCAAAGCCCACACGAGTTGGTGGCACCCTC-CAGTCCTCAAAGAGCA
*
4217197 GGATGCC-TTTTCGTTTT-AAAGCCCACACAAGTTGGTGGCAC-CTTCTAGTCCTCAAAGAGCAA
128 GGACGCCTTTTTC-TTTTCAAAGCCCACACAAGTTGGTGGCACTC-TCTAGTCCTCAAAGAGCAA
4217259 GACGCTTTCTCTTTTCAACC
191 GACGCTTTCTCTTTTCAACC
4217279 TTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTC
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTTTAGTCCTC
* * * *
4217344 AAAGAGCAGGACGCCTTTTAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGTAGG
65 AAAGAGCAAGACGCATTTCAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGG
*
4217409 ACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACTCTGTAGTCCTCAAAGAGCA
130 ACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACTCTCTAGTCCTCAAAGAGCA
4217469 GGACCCACTT
Statistics
Matches: 175, Mismatches: 9, Indels: 11
0.90 0.05 0.06
Matches are distributed among these distances:
210 121 0.69
211 49 0.28
212 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (210 bp):
TTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTAGTCCTCA
AAGAGCAAGACGCATTTCAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGA
CGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACTCTCTAGTCCTCAAAGAGCAAGACGC
TTTCTCTTTTCAACC
Found at i:4217339 original size:55 final size:55
Alignment explanation
Indices: 4217279--4217472 Score: 246
Period size: 55 Copynumber: 3.4 Consensus size: 55
4217269 CTTTTCAACC
4217279 TTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCT
* * *
4217334 TTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACGAGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCT
** *
4217389 TCCAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA-CT
1 TTTAGTCCTCAAAGAGCAGGACG-C-----C-TTTCAAAGCCCACACAAGTTGGTGGCACCT
*
4217450 CTGTAGTCCTCAAAGAGCAGGAC
1 -TTTAGTCCTCAAAGAGCAGGAC
4217473 CCACTTTATT
Statistics
Matches: 119, Mismatches: 12, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
55 72 0.61
56 1 0.01
61 2 0.02
62 44 0.37
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (55 bp):
TTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCT
Found at i:4217502 original size:42 final size:43
Alignment explanation
Indices: 4217455--4217646 Score: 221
Period size: 42 Copynumber: 4.4 Consensus size: 43
4217445 GCACTCTGTA
*
4217455 GTCCTCAAAGAGCAGGACCCACTTTATTTTCCTCTTT-T-TTTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCT-TTTCTCTTTT
* *
4217497 GTCCTCAAAGAGCAGGACGCA-TTTCAGTTTCCTTTTCTCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTTTTCTCTTTT
* * * *
4217540 GTCCTCAAAGAGCAGGACGCTCTTTATTTCTTTCTTTTCCCTTCTA
1 GTCCTCAAAGAGCAGGACGCACTTTA-TT-TTCCTTTTCTCTT-TT
*
4217586 GTCCTCAAAGAGCAGGACACACTTTATTTTCCTTTTC-CTTTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCTTTT
* *
4217628 GTCCTCAGAGAGCAAGACG
1 GTCCTCAAAGAGCAGGACG
4217647 TATTTCGTTT
Statistics
Matches: 127, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
41 6 0.05
42 45 0.35
43 27 0.21
44 12 0.09
45 12 0.09
46 25 0.20
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.38
Consensus pattern (43 bp):
GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCTTTT
Found at i:4217555 original size:43 final size:42
Alignment explanation
Indices: 4217455--4217675 Score: 202
Period size: 42 Copynumber: 5.1 Consensus size: 42
4217445 GCACTCTGTA
* * *
4217455 GTCCTCAAAGAGCAGGACCCACTTTATTTTCCTCTTT-T-TTTT
1 GTCCTCAAAGAGCAGGACGCA-TTTAGTTTCCT-TTTCTCCTTT
4217497 GTCCTCAAAGAGCAGGACGCATTTCAGTTTCCTTTTCTCCTTT
1 GTCCTCAAAGAGCAGGACGCATTT-AGTTTCCTTTTCTCCTTT
*
4217540 GTCCTCAAAGAGCAGGACGCTCTTTA-TTTCTTTCTTTTC-CCTTCT
1 GTCCTCAAAGAGCAGGACGC-ATTTAGTTTC---CTTTTCTCCTT-T
* * *
4217585 AGTCCTCAAAGAGCAGGACACACTTTATTTTCCTTTTC-CTTTT
1 -GTCCTCAAAGAGCAGGACGCA-TTTAGTTTCCTTTTCTCCTTT
* * * *
4217628 GTCCTCAGAGAGCAAGACGTATTTCGTTTCCCTTTT-TCCTTT
1 GTCCTCAAAGAGCAGGACGCATTTAGTTT-CCTTTTCTCCTTT
4217670 GTCCTC
1 GTCCTC
4217676 GAAAAATAGG
Statistics
Matches: 152, Mismatches: 14, Indels: 26
0.79 0.07 0.14
Matches are distributed among these distances:
41 12 0.08
42 65 0.43
43 25 0.16
44 16 0.11
45 7 0.05
46 23 0.15
47 4 0.03
ACGTcount: A:0.18, C:0.28, G:0.14, T:0.40
Consensus pattern (42 bp):
GTCCTCAAAGAGCAGGACGCATTTAGTTTCCTTTTCTCCTTT
Found at i:4218464 original size:21 final size:22
Alignment explanation
Indices: 4218428--4218470 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
4218418 AATTTTAAAT
*
4218428 TTCAATAATTTGTATCGATACA
1 TTCAATAATATGTATCGATACA
4218450 TTCAATAA-ATGTATCGATACA
1 TTCAATAATATGTATCGATACA
4218471 AAACTTTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37
Consensus pattern (22 bp):
TTCAATAATATGTATCGATACA
Found at i:4218540 original size:21 final size:21
Alignment explanation
Indices: 4218514--4218555 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
4218504 AGCTACTGCC
4218514 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
*
4218535 AAGGAAGTGTATCGATACATT
1 AAGGAAATGTATCGATACATT
4218556 GTATCGATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (21 bp):
AAGGAAATGTATCGATACATT
Found at i:4218560 original size:13 final size:13
Alignment explanation
Indices: 4218542--4218567 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4218532 ATTAAGGAAG
4218542 TGTATCGATACAT
1 TGTATCGATACAT
4218555 TGTATCGATACAT
1 TGTATCGATACAT
4218568 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4220975 original size:51 final size:50
Alignment explanation
Indices: 4220920--4221104 Score: 237
Period size: 51 Copynumber: 3.6 Consensus size: 50
4220910 TAAGTTTCTC
* *
4220920 AATTTTTCATAATCGGGGATACTCCAACCCTGGTTTTATTTCTAAAACACT
1 AATTTTCCACAATCGGGGATACTCCAACCC-GGTTTTATTTCTAAAACACT
*
4220971 AATTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTT-TCAAAACACC
1 AATTTTCCACAATCGGGGATACTCCAA-CCCGGTTTTATTTCT-AAAACACT
** * *
4221022 AATTTTCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACT
1 AATTTTCC-ACAATCGGGGATACTCCAAC-CCGGTTTTATTT-CTAAAACACT
*
4221075 AATTTTTCACAATCGGGGATACTCCAACCC
1 AATTTTCCACAATCGGGGATACTCCAACCC
4221105 CGTTAATCAT
Statistics
Matches: 117, Mismatches: 11, Indels: 12
0.84 0.08 0.09
Matches are distributed among these distances:
50 1 0.01
51 53 0.45
52 49 0.42
53 14 0.12
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.33
Consensus pattern (50 bp):
AATTTTCCACAATCGGGGATACTCCAACCCGGTTTTATTTCTAAAACACT
Found at i:4221060 original size:52 final size:51
Alignment explanation
Indices: 4220920--4221104 Score: 239
Period size: 52 Copynumber: 3.6 Consensus size: 51
4220910 TAAGTTTCTC
* * *
4220920 AATTTTTCATAATCGGGGATACTCCAACCCTGGTTTTA-TTTCTAAAACACT
1 AATTTTCCACAATCGGGGATACTCCAACCC-GGTTTTATTTTCAAAAACACT
*
4220971 AATTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACC
1 AATTTTCCACAATCGGGGATACTCCAA-CCCGGTTTTATTTTCAAAAACACT
** * *
4221022 AATTTTCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACT
1 AATTTTCC-ACAATCGGGGATACTCCAAC-CCGGTTTTATTTTCAAAAACACT
*
4221075 AATTTTTCACAATCGGGGATACTCCAACCC
1 AATTTTCCACAATCGGGGATACTCCAACCC
4221105 CGTTAATCAT
Statistics
Matches: 118, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
51 50 0.42
52 54 0.46
53 14 0.12
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.33
Consensus pattern (51 bp):
AATTTTCCACAATCGGGGATACTCCAACCCGGTTTTATTTTCAAAAACACT
Found at i:4221157 original size:28 final size:28
Alignment explanation
Indices: 4221089--4221160 Score: 103
Period size: 27 Copynumber: 2.6 Consensus size: 28
4221079 TTTCACAATC
4221089 GGGGATACTCCAACCCCGTTAATCATCA
1 GGGGATACTCCAACCCCGTTAATCATCA
**
4221117 -GGGATACTCCAACCCCGTT-ATTTTCGA
1 GGGGATACTCCAACCCCGTTAATCATC-A
4221144 GGGGATACTCCAACCCC
1 GGGGATACTCCAACCCC
4221161 CAACTTTATT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
26 4 0.10
27 20 0.50
28 16 0.40
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.22
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTAATCATCA
Found at i:4221268 original size:80 final size:79
Alignment explanation
Indices: 4221117--4221289 Score: 260
Period size: 79 Copynumber: 2.2 Consensus size: 79
4221107 TTAATCATCA
* *
4221117 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCCAACTTTATTTCTAAAATATT
1 GGGATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACCCCCAACTTTATTTCTAAAACATT
4221182 GATTTCTCATAATCG
66 GATTTCT-ATAATCG
* * *
4221197 GGGATACTCCAACCCCATTATTTTC-ACGGGGATACTCCAA-CCCCGATTTTATTTTTAAAACAT
1 GGGATACTCCAACCCCATTATTTTCGA-GGGGATACTCCAACCCCCAACTTTATTTCTAAAACAT
4221260 TGATTTTCTATAATCG
65 TGA-TTTCTATAATCG
4221276 GGGATACTCCAACC
1 GGGATACTCCAACC
4221290 TCGTTACTAT
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
79 44 0.51
80 42 0.49
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (79 bp):
GGGATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACCCCCAACTTTATTTCTAAAACATT
GATTTCTATAATCG
Found at i:4223465 original size:165 final size:166
Alignment explanation
Indices: 4223126--4223508 Score: 411
Period size: 165 Copynumber: 2.3 Consensus size: 166
4223116 AACTGCATGT
*
4223126 ATATGATCAAAAATGAAAT-AAATGATAATGACTCCTCTTTTATATTCTATGGAGCTCAAACTCA
1 ATATGATTAAAAATG-AATCAAATGATAATGACTCCTCTTTTATATTCTATGGAGCTCAAACTCA
* *
4223190 ATGATATTTCCAAGAAGATTGTCATTTTCTCTCTATTTTTGAAGTTGTAGCAGAAAATCTGACAA
65 ATGATATTTCCAAGAAAATTGTCATTTTCTCTCTATTTTTAAAGTTGTAGCAGAAAATCTGACAA
* * * *
4223255 ATTGCATTCTTTTAATCATTTGATGGATTCATTATAT
130 ACTGCATTCTTTCAATCATTTGATAGATTCATTATAC
* * * * *
4223292 ATATGATTAAAAATGAATCAAATGATGATGACTTTCCTC-TTT-TGTTGTATGGAGCTCAATCTG
1 ATATGATTAAAAATGAATCAAATGATAATGAC--TCCTCTTTTATATTCTATGGAGCTCAAACTC
* * * *
4223355 AGTGATATTTCCAAGAAAATTAGTCATTTTC-CT-TGTTTTTAAAGTTTTAGCAGAAAATCTGAT
64 AATGATATTTCCAAGAAAATT-GTCATTTTCTCTCTATTTTTAAAGTTGTAGCAGAAAATCTGAC
** * * *
4223418 GGACTGCATTCTTTCATTCATTTGATAGAGTTGA-TATGC
128 AAACTGCATTCTTTCAATCATTTGATAGA-TTCATTATAC
* ** * * * *
4223457 ATATGATTAGAAACAAATCAAATGACAATAACTCC-CTAATTCTATTCTATGG
1 ATATGATTAAAAATGAATCAAATGATAATGACTCCTCT-TTTATATTCTATGG
4223509 TTCTCAATGC
Statistics
Matches: 179, Mismatches: 30, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
162 1 0.01
163 3 0.02
164 2 0.01
165 89 0.50
166 67 0.37
167 12 0.07
168 5 0.03
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (166 bp):
ATATGATTAAAAATGAATCAAATGATAATGACTCCTCTTTTATATTCTATGGAGCTCAAACTCAA
TGATATTTCCAAGAAAATTGTCATTTTCTCTCTATTTTTAAAGTTGTAGCAGAAAATCTGACAAA
CTGCATTCTTTCAATCATTTGATAGATTCATTATAC
Found at i:4230334 original size:2 final size:2
Alignment explanation
Indices: 4230327--4230355 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
4230317 TTCATTTTCT
4230327 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
4230356 TCGCAATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:4232174 original size:2 final size:2
Alignment explanation
Indices: 4232162--4232195 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
4232152 CTGTATGCTC
*
4232162 CT CT CT TT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
4232196 ATATATATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
CT
Found at i:4232200 original size:2 final size:2
Alignment explanation
Indices: 4232195--4232231 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
4232185 TCTCTCTCTC
4232195 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4232232 GTAATTTAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4233532 original size:14 final size:14
Alignment explanation
Indices: 4233513--4233539 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
4233503 AGGCTTAGGA
4233513 AACAAAGAGAAGAG
1 AACAAAGAGAAGAG
4233527 AACAAAGAGAAGA
1 AACAAAGAGAAGA
4233540 TGTTTACGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.07, G:0.26, T:0.00
Consensus pattern (14 bp):
AACAAAGAGAAGAG
Found at i:4236701 original size:20 final size:20
Alignment explanation
Indices: 4236661--4236714 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
4236651 TTCTACAATT
* *
4236661 TGTATCGATACAGTTAGTGAA
1 TGTATTGATACA-TAAGTGAA
4236682 TGTATTGATACATAAGTGAA
1 TGTATTGATACATAAGTGAA
4236702 TGTATTGATACAT
1 TGTATTGATACAT
4236715 GTCTCAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 20 0.65
21 11 0.35
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.37
Consensus pattern (20 bp):
TGTATTGATACATAAGTGAA
Found at i:4239239 original size:27 final size:26
Alignment explanation
Indices: 4239197--4239247 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
4239187 TTTGATTGTT
*
4239197 GGGGATACTCCAACCTTGCTCTTTCGA
1 GGGGATACTCCAACCTCGCT-TTTCGA
4239224 GGGGATACTCTC-ACCTCGCTTTTC
1 GGGGATACTC-CAACCTCGCTTTTC
4239248 TTTAATATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 4 0.18
27 17 0.77
28 1 0.05
ACGTcount: A:0.16, C:0.31, G:0.22, T:0.31
Consensus pattern (26 bp):
GGGGATACTCCAACCTCGCTTTTCGA
Found at i:4243375 original size:81 final size:81
Alignment explanation
Indices: 4243240--4243396 Score: 314
Period size: 81 Copynumber: 1.9 Consensus size: 81
4243230 TTATCTTGAG
4243240 AATGTAACCGTCTTTCTTATTTTCAAATCTAGCTTGGATGAAATCAAACTATTATTAATGAAAGA
1 AATGTAACCGTCTTTCTTATTTTCAAATCTAGCTTGGATGAAATCAAACTATTATTAATGAAAGA
4243305 TTTATGTTGAATCGAT
66 TTTATGTTGAATCGAT
4243321 AATGTAACCGTCTTTCTTATTTTCAAATCTAGCTTGGATGAAATCAAACTATTATTAATGAAAGA
1 AATGTAACCGTCTTTCTTATTTTCAAATCTAGCTTGGATGAAATCAAACTATTATTAATGAAAGA
4243386 TTTATGTTGAA
66 TTTATGTTGAA
4243397 GCTGTTGCCA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 76 1.00
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.39
Consensus pattern (81 bp):
AATGTAACCGTCTTTCTTATTTTCAAATCTAGCTTGGATGAAATCAAACTATTATTAATGAAAGA
TTTATGTTGAATCGAT
Found at i:4252903 original size:45 final size:47
Alignment explanation
Indices: 4252783--4252906 Score: 153
Period size: 49 Copynumber: 2.6 Consensus size: 47
4252773 AGATGAGATG
*
4252783 AGTGCCAATGTGCTAATTCAAGGCCAGCGACATTGGGCTAAGGGAAA
1 AGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTAAGGGAAA
* * *
4252830 AGTAGACCAATGTGCTGATTCAAGGCCAGTGACTTTGGGCTAA-TG-AA
1 AGT-G-CCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTAAGGGAAA
* * *
4252877 GGTGCCAATATGCTGATTCAATGCCAGCGA
1 AGTGCCAATGTGCTGATTCAAGGCCAGCGA
4252907 TATCGAACTT
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
45 23 0.34
46 1 0.01
47 7 0.10
48 2 0.03
49 34 0.51
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (47 bp):
AGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTAAGGGAAA
Found at i:4253129 original size:28 final size:28
Alignment explanation
Indices: 4252977--4253946 Score: 604
Period size: 28 Copynumber: 33.4 Consensus size: 28
4252967 GCTTTTAAAA
* *
4252977 AAAGG-TGCCACTAACTTATGTAGGCTTTG
1 AAAGGATGCCACTGAC-T-TGTGGGCTTTG
* *
4253006 AAAAGAGTTGCCACCGACTTGCATGGGCTTTG
1 -AAAG-GATGCCACTGACTTG--TGGGCTTTG
* * *
4253038 AAAGGGTGCCACTAACTTGTAGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
4253066 AAAAAAGAGTTGCCA-TCGACTTGTGTGGGCTTTG
1 ---AAAG-GATGCCACT-GAC-T-TGTGGGCTTTG
*
4253100 AAAGGATGCCATTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
4253128 AAAAGATGCTACTGTCTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
4253156 AAA-AAGTGCCACTGACTTGTGGGCTTTG
1 AAAGGA-TGCCACTGACTTGTGGGCTTTG
4253184 AAAAGGTATGCCACTGACTTGTGGGCTTTGG
1 -AAAGG-ATGCCACTGACTTGTGGGCTTT-G
* *
4253215 AAAGG-TTCCACTAACTTGTGGGCTTTGG
1 AAAGGATGCCACTGACTTGTGGGCTTT-G
* * *
4253243 AAATG-TGCCACCGATTTGTGTGGACTTTG
1 AAAGGATGCCACTGACTTGTG-GG-CTTTG
*
4253272 AAAAGAGTTGCCA-TCGACTTGTGTGGACTTTG
1 -AAAG-GATGCCACT-GACTTGTG-GG-CTTTG
* * *
4253304 AAAAGAGTTGCCA-TCAACTTGTGTGGATTTTG
1 -AAAG-GATGCCACT-GACTTGTG-GG-CTTTG
*
4253336 AAAAGAATTGCCACTGACTTGTGGGCTTTG
1 -AAAGGA-TGCCACTGACTTGTGGGCTTTG
* *
4253366 AAAAGGGTGCCACTGACTTGTGAGCTTTG
1 -AAAGGATGCCACTGACTTGTGGGCTTTG
4253395 AAAGAGTATGCCACTGACTTGTGGGCTTT-
1 AAAG-G-ATGCCACTGACTTGTGGGCTTTG
* * *
4253424 AAAAGAGTGCCACTGACTTGTGGGTTTTA
1 AAAGGA-TGCCACTGACTTGTGGGCTTTG
* * *
4253453 AAAGG-TACCACTGATTTGTGGGCTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
4253480 AAAGGGTGCCATTGATTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
4253508 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
4253536 AAATGGGTTGCCACCGACTTGTGTGGGCTTTC
1 AAA--GGATGCCACTGAC-T-TGTGGGCTTTG
* * * *
4253568 AAATGGGTTGCCACCGACTTATAGGCTTTG
1 AAA--GGATGCCACTGACTTGTGGGCTTTG
* *
4253598 AAAAAAAGATGCCACTAACTTGTGGGCTTTTG
1 ---AAAGGATGCCACTGACTTGTGGGC-TTTG
** * * * *
4253630 AAAATATGCCACTAACTTGTTGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
4253658 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
4253686 AAATGG-TGCCATTGACTTATGGGCATTG
1 AAA-GGATGCCACTGACTTGTGGGCTTTG
*
4253714 AAAGGATGCCACTGACTTATGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
4253742 AAATGG-TGCCGCTGACTTGTGAGCTTT-
1 AAA-GGATGCCACTGACTTGTGGGCTTTG
* * * ** * * *
4253769 AGAAGGGTTCTAGGGAGTTGTGGAC-TTA
1 A-AAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
4253797 AAAGGATACCA-TGGAGTTGTAGACTTTA
1 AAAGGATGCCACT-GACTTGTGGGCTTTG
* * * *
4253825 AAAGGATGCCACGGAGTTGTGGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
4253853 AAAGGATGCCACGGAATTATGGAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * **
4253880 AAAGGATACCACAGAGTTGTGAAC-TTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * *
4253907 AAAGGATGCCACGGAGTTGTGGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
4253935 AAAGGATGCCAC
1 AAAGGATGCCAC
4253947 AAAGTTGTGG
Statistics
Matches: 782, Mismatches: 110, Indels: 98
0.79 0.11 0.10
Matches are distributed among these distances:
27 95 0.12
28 341 0.44
29 61 0.08
30 108 0.14
31 38 0.05
32 124 0.16
33 5 0.01
34 10 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (28 bp):
AAAGGATGCCACTGACTTGTGGGCTTTG
Found at i:4253849 original size:55 final size:55
Alignment explanation
Indices: 4253783--4253965 Score: 260
Period size: 55 Copynumber: 3.3 Consensus size: 55
4253773 GGGTTCTAGG
* * * *
4253783 GAGTTGTGGACTTAAAAGGATACCATGGAGTTGTAGACTTTAAAAGGATGCCACG
1 GAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGATGCCACA
* * *
4253838 GAGTTGTGGACTTTAAAAGGATGCCACGGAATTATGGAC-TTAAAAGGATACCACA
1 GAGTTGTGGAC-TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGATGCCACA
* *
4253893 GAGTTGTGAACTTGAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGATGCCACA
1 GAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGATGCCACA
*
4253948 AAGTTGTGGACTTAAAAG
1 GAGTTGTGGACTTAAAAG
4253966 AACTCACAGT
Statistics
Matches: 111, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
54 24 0.22
55 65 0.59
56 22 0.20
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (55 bp):
GAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGATGCCACA
Found at i:4253935 original size:82 final size:83
Alignment explanation
Indices: 4253784--4253965 Score: 271
Period size: 82 Copynumber: 2.2 Consensus size: 83
4253774 GGTTCTAGGG
* **
4253784 AGTTGTGGACTTAAAAGGATACCATGGAGTTGTAGACTTTAAAAGGATGCCACGGAGTTGTGGAC
1 AGTTATGGACTTAAAAGGATACCACAGAGTTGTAGACTTTAAAAGGATGCCACGGAGTTGTGGAC
*
4253849 TTTAAAAGGATGCCACGGA
66 TTTAAAAGGATGCCAC-AA
*
4253868 A-TTATGGACTTAAAAGGATACCACAGAGTTGT-GAAC-TTGAAAGGATGCCACGGAGTTGTGGA
1 AGTTATGGACTTAAAAGGATACCACAGAGTTGTAG-ACTTTAAAAGGATGCCACGGAGTTGTGGA
4253930 CTTTAAAAGGATGCCACAA
65 CTTTAAAAGGATGCCACAA
*
4253949 AGTTGTGGACTTAAAAG
1 AGTTATGGACTTAAAAG
4253966 AACTCACAGT
Statistics
Matches: 90, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
81 2 0.02
82 57 0.63
83 30 0.33
84 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (83 bp):
AGTTATGGACTTAAAAGGATACCACAGAGTTGTAGACTTTAAAAGGATGCCACGGAGTTGTGGAC
TTTAAAAGGATGCCACAA
Found at i:4253952 original size:28 final size:27
Alignment explanation
Indices: 4253782--4253965 Score: 242
Period size: 28 Copynumber: 6.7 Consensus size: 27
4253772 AGGGTTCTAG
* *
4253782 GGAGTTGTGGACTTAAAAGGATACCAT
1 GGAGTTGTGGACTTAAAAGGATGCCAC
*
4253809 GGAGTTGTAGACTTTAAAAGGATGCCAC
1 GGAGTTGTGGAC-TTAAAAGGATGCCAC
4253837 GGAGTTGTGGACTTTAAAAGGATGCCAC
1 GGAGTTGTGGAC-TTAAAAGGATGCCAC
* * *
4253865 GGAATTATGGACTTAAAAGGATACCAC
1 GGAGTTGTGGACTTAAAAGGATGCCAC
* * *
4253892 AGAGTTGTGAACTTGAAAGGATGCCAC
1 GGAGTTGTGGACTTAAAAGGATGCCAC
4253919 GGAGTTGTGGACTTTAAAAGGATGCCAC
1 GGAGTTGTGGAC-TTAAAAGGATGCCAC
**
4253947 AAAGTTGTGGACTTAAAAG
1 GGAGTTGTGGACTTAAAAG
4253966 AACTCACAGT
Statistics
Matches: 137, Mismatches: 18, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
27 63 0.46
28 74 0.54
ACGTcount: A:0.34, C:0.13, G:0.29, T:0.24
Consensus pattern (27 bp):
GGAGTTGTGGACTTAAAAGGATGCCAC
Found at i:4255294 original size:6 final size:6
Alignment explanation
Indices: 4255285--4255319 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
4255275 TCCCTTTTTA
*
4255285 TTTTGC TTTTGC TTGTGC TTTTGC TTTTGAC TTTT
1 TTTTGC TTTTGC TTTTGC TTTTGC TTTTG-C TTTT
4255320 TCGTCATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
6 21 0.81
7 5 0.19
ACGTcount: A:0.03, C:0.14, G:0.17, T:0.66
Consensus pattern (6 bp):
TTTTGC
Found at i:4262417 original size:134 final size:135
Alignment explanation
Indices: 4262255--4262555 Score: 462
Period size: 135 Copynumber: 2.2 Consensus size: 135
4262245 CATTATGCAT
* * * *
4262255 TAAA-GTGGCCTGGGTTTGAAACCCAGGCCATTCATTTTCATCG-TTTTTTTCTTTTTTGTTCCC
1 TAAAGGTGGCCTGGGTTCGAAACCTAGGCCACTCATTTTCACCGTTTTTTTTCTTTTTTGTTCCC
* * *
4262318 TTTTTGATTTTTTTGTTAGTTTATGACTAAAGTTTGACATTGGTTCATGGGCCATAGTGACCTTT
66 TTTTTGATTTTTTTGTTAGTTTATGACTAAAATTTAACATTGGTTCATGGGCCATAGTGACCCTT
4262383 TGTCA
131 TGTCA
*
4262388 TAAAGGTGGCTTGGGTTCGAAACCTAGGCCACTCATTTTCACCGTTTTTTTTCTTTTTTGTTCCC
1 TAAAGGTGGCCTGGGTTCGAAACCTAGGCCACTCATTTTCACCGTTTTTTTTCTTTTTTGTTCCC
* **
4262453 TTTTTGATTTTTTTGTTAGTTTATGACTAAAATTTAACCTTGGTTCATGGGTTATAGTGACCCTT
66 TTTTTGATTTTTTTGTTAGTTTATGACTAAAATTTAACATTGGTTCATGGGCCATAGTGACCCTT
4262518 TGTCA
131 TGTCA
* * *
4262523 CAAAGGTGGCCTGAGTTCAAAACCTAGGCCACT
1 TAAAGGTGGCCTGGGTTCGAAACCTAGGCCACT
4262556 TATTCTTTTT
Statistics
Matches: 151, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
133 4 0.03
134 34 0.23
135 113 0.75
ACGTcount: A:0.20, C:0.18, G:0.19, T:0.44
Consensus pattern (135 bp):
TAAAGGTGGCCTGGGTTCGAAACCTAGGCCACTCATTTTCACCGTTTTTTTTCTTTTTTGTTCCC
TTTTTGATTTTTTTGTTAGTTTATGACTAAAATTTAACATTGGTTCATGGGCCATAGTGACCCTT
TGTCA
Found at i:4266269 original size:42 final size:43
Alignment explanation
Indices: 4266168--4266281 Score: 124
Period size: 42 Copynumber: 2.7 Consensus size: 43
4266158 ACTTTTTTTT
* * * * * ** *
4266168 CTTTTCCCTTTGTACTCAAGGAGCATGACGCATTCTTTTTTTC
1 CTTTTTCCTTTGTCCTCAAGGAGTAGGACCCATTCTCATTCTC
*
4266211 CTTTTTCCTTTTTCCTCAAGGAGTAGGACCCATT-TCATTCTC
1 CTTTTTCCTTTGTCCTCAAGGAGTAGGACCCATTCTCATTCTC
4266253 CTTTTTCCTTTGTCCTCGAA-GAGTAGGAC
1 CTTTTTCCTTTGTCCTC-AAGGAGTAGGAC
4266282 ATACTTTTTT
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 30 0.50
43 30 0.50
ACGTcount: A:0.17, C:0.26, G:0.15, T:0.42
Consensus pattern (43 bp):
CTTTTTCCTTTGTCCTCAAGGAGTAGGACCCATTCTCATTCTC
Found at i:4266397 original size:31 final size:31
Alignment explanation
Indices: 4266362--4266669 Score: 114
Period size: 31 Copynumber: 9.4 Consensus size: 31
4266352 CGAGTTTATA
* *
4266362 GCACCTGAGTCAAAGCCCACATAAGTTGGTG
1 GCACCTGAGTCAAAGCCCACACAAGCTGGTG
**** * *
4266393 GCACCTAAGTCTGAGTCAAAGCTTGTATAAGCTGATG
1 GCA-C-----CTGAGTCAAAGCCCACACAAGCTGGTG
* * * * * *
4266430 TCACCCGAGTTAAAGCACGCACAAGCTGATG
1 GCACCTGAGTCAAAGCCCACACAAGCTGGTG
* * * * *
4266461 GCACTTAAGTCAAAACCCACATAAGTTGGTG
1 GCACCTGAGTCAAAGCCCACACAAGCTGGTG
** *
4266492 GCACCAAAGCTTGAGTCAAAGCCCGTACAAGCTGGCG
1 GCA-C----C-TGAGTCAAAGCCCACACAAGCTGGTG
* * * **
4266529 GCA-CTCGAGTCTAAGCCCACACGAGTTGGCA
1 GCACCT-GAGTCAAAGCCCACACAAGCTGGTG
* * *
4266560 GCACCTAAGTCAAAGCCCACACAAACTAGTG
1 GCACCTGAGTCAAAGCCCACACAAGCTGGTG
* *
4266591 GCACTTAAGCTTGAGTCAAAGCCCGCACAAGCTGGCG
1 GCAC-----C-TGAGTCAAAGCCCACACAAGCTGGTG
* *
4266628 GCACCCGAGTCAAAGCCCACATAAGCTGGTG
1 GCACCTGAGTCAAAGCCCACACAAGCTGGTG
* *
4266659 GTACCTAAGTC
1 GCACCTGAGTC
4266670 CAAGTCAAGT
Statistics
Matches: 199, Mismatches: 58, Indels: 40
0.67 0.20 0.13
Matches are distributed among these distances:
30 1 0.01
31 121 0.61
32 5 0.03
36 2 0.01
37 70 0.35
ACGTcount: A:0.31, C:0.28, G:0.24, T:0.18
Consensus pattern (31 bp):
GCACCTGAGTCAAAGCCCACACAAGCTGGTG
Found at i:4266665 original size:99 final size:99
Alignment explanation
Indices: 4266362--4266669 Score: 348
Period size: 99 Copynumber: 3.1 Consensus size: 99
4266352 CGAGTTTATA
* ** *
4266362 GCACCTGAGTCAAAGCCCACATAAGTTGGTGGCACCTAAG-TCTGAGTCAAAGCTTGTATAAGCT
1 GCACCTAAGTCAAAGCCCACATAAGTTGGTGGCACCTAAGCT-TGAGTCAAAGCCCGTACAAGCT
** * * * * *
4266426 GATGTCACCCGAGTTAAAGCACGCACAAGCTGATG
65 GGCGGCACCCGAGTCAAAGCCCACACAAGCTGGTG
* * *
4266461 GCACTTAAGTCAAAACCCACATAAGTTGGTGGCACCAAAGCTTGAGTCAAAGCCCGTACAAGCTG
1 GCACCTAAGTCAAAGCCCACATAAGTTGGTGGCACCTAAGCTTGAGTCAAAGCCCGTACAAGCTG
* * * * **
4266526 GCGGCACTCGAGTCTAAGCCCACACGAGTTGGCA
66 GCGGCACCCGAGTCAAAGCCCACACAAGCTGGTG
* ** * * *
4266560 GCACCTAAGTCAAAGCCCACACAAACTAGTGGCACTTAAGCTTGAGTCAAAGCCCGCACAAGCTG
1 GCACCTAAGTCAAAGCCCACATAAGTTGGTGGCACCTAAGCTTGAGTCAAAGCCCGTACAAGCTG
*
4266625 GCGGCACCCGAGTCAAAGCCCACATAAGCTGGTG
66 GCGGCACCCGAGTCAAAGCCCACACAAGCTGGTG
*
4266659 GTACCTAAGTC
1 GCACCTAAGTC
4266670 CAAGTCAAGT
Statistics
Matches: 171, Mismatches: 37, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
99 170 0.99
100 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.24, T:0.18
Consensus pattern (99 bp):
GCACCTAAGTCAAAGCCCACATAAGTTGGTGGCACCTAAGCTTGAGTCAAAGCCCGTACAAGCTG
GCGGCACCCGAGTCAAAGCCCACACAAGCTGGTG
Found at i:4267280 original size:20 final size:21
Alignment explanation
Indices: 4267230--4267280 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
4267220 TTCTATAATT
4267230 TGTATCGATATAATTAATGAA
1 TGTATCGATATAATTAATGAA
* *
4267251 TATATTGATA-AA-TAAGTGAA
1 TGTATCGATATAATTAA-TGAA
4267271 TGTATCGATA
1 TGTATCGATA
4267281 CATGTCTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
19 3 0.12
20 14 0.56
21 8 0.32
ACGTcount: A:0.43, C:0.04, G:0.16, T:0.37
Consensus pattern (21 bp):
TGTATCGATATAATTAATGAA
Found at i:4273890 original size:29 final size:29
Alignment explanation
Indices: 4273858--4274065 Score: 78
Period size: 29 Copynumber: 7.2 Consensus size: 29
4273848 TCATTGATGC
4273858 AATTTCATGTATTTTAAGGCCATTTTAGT
1 AATTTCATGTATTTTAAGGCCATTTTAGT
*
4273887 AATTTGCCAT-TA-TTT-AGGACCA-TTTATGC
1 AATTT--CATGTATTTTAAGG-CCATTTTA-GT
*** ***
4273916 AATTTCATGCGCTTTAAGGTTGTTTTAGT
1 AATTTCATGTATTTTAAGGCCATTTTAGT
* *
4273945 GATTT-TTCGT-TATTTAATGG-C-TTTTATGT
1 AATTTCAT-GTAT-TTTAA-GGCCATTTTA-GT
* * *
4273974 AATTTTATGTATTTTAGGGTCATTTTAGT
1 AATTTCATGTATTTTAAGGCCATTTTAGT
*
4274003 AATTTACCATGT-TTTAAAGG-C-TTTTATGT
1 AATTT--CATGTATTTTAAGGCCATTTTA-GT
* * * *
4274032 AATTTCATATATTTTATGACTATTTTAGT
1 AATTTCATGTATTTTAAGGCCATTTTAGT
*
4274061 CATTT
1 AATTT
4274066 TCGATGTTTA
Statistics
Matches: 133, Mismatches: 24, Indels: 44
0.66 0.12 0.22
Matches are distributed among these distances:
27 7 0.05
28 25 0.19
29 65 0.49
30 29 0.22
31 7 0.05
ACGTcount: A:0.25, C:0.10, G:0.14, T:0.51
Consensus pattern (29 bp):
AATTTCATGTATTTTAAGGCCATTTTAGT
Found at i:4273944 original size:58 final size:58
Alignment explanation
Indices: 4273820--4273934 Score: 149
Period size: 58 Copynumber: 2.0 Consensus size: 58
4273810 ATTTATGCAT
* ** * *
4273820 CATTTTAGTTATTTACCATGATTTAGGTTCATTGATGCAATTTCATGTATTTTAAGGC
1 CATTTTAGTAATTTACCATGATTTAGGACCATTGATGCAATTTCATGCACTTTAAGGC
* * * *
4273878 CATTTTAGTAATTTGCCATTATTTAGGACCATTTATGCAATTTCATGCGCTTTAAGG
1 CATTTTAGTAATTTACCATGATTTAGGACCATTGATGCAATTTCATGCACTTTAAGG
4273935 TTGTTTTAGT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
58 48 1.00
ACGTcount: A:0.26, C:0.14, G:0.16, T:0.44
Consensus pattern (58 bp):
CATTTTAGTAATTTACCATGATTTAGGACCATTGATGCAATTTCATGCACTTTAAGGC
Found at i:4274057 original size:58 final size:57
Alignment explanation
Indices: 4273957--4274078 Score: 147
Period size: 58 Copynumber: 2.1 Consensus size: 57
4273947 TTTTTCGTTA
* * * **
4273957 TTTAATGGCTTTTATGTAATTTTATGTATTTTAGGGTCATTTTAGTAATTTACCATG
1 TTTAAAGGCTTTTATGTAATTTCATATATTTTAGACTCATTTTAGTAATTTACCATG
* * *
4274014 TTTTAAAGGCTTTTATGTAATTTCATATATTTTATGACT-ATTTTAGTCATTTTCGATG
1 -TTTAAAGGCTTTTATGTAATTTCATATATTTTA-GACTCATTTTAGTAATTTACCATG
4274072 TTTAAAG
1 TTTAAAG
4274079 AATTATAATG
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
57 7 0.13
58 46 0.84
59 2 0.04
ACGTcount: A:0.26, C:0.07, G:0.14, T:0.52
Consensus pattern (57 bp):
TTTAAAGGCTTTTATGTAATTTCATATATTTTAGACTCATTTTAGTAATTTACCATG
Found at i:4277110 original size:163 final size:161
Alignment explanation
Indices: 4276701--4277170 Score: 544
Period size: 163 Copynumber: 2.9 Consensus size: 161
4276691 TAGAGTTTGT
* * * * * * *
4276701 AAGTGTTAATTTACTTTAATTTGTTT-TATTTCG-AAAATATTATTTCATATCTTAATGGAAGCC
1 AAGTGTTAATTTAATTTAATTTATTTAT-TTTCGAAAAATATCATTTCGTACCTTAATGAAAACC
**
4276764 CAAAAAGATACGAAAAGTATTTGAAATCTTTTATACCCTTA-AGAAC-CCCATAGGAATATAAAA
65 TGAAAAGATACGAAAAGT-TTTGAAATCTTTTATACCCTTACAG-ACTCCCATAGGAATATAAAA
* **
4276827 GA-TAAAAAATATTAA-AGTTCCTCTCGGTTATGA
128 GATTAAAAAATATTAATA-TTCATCTCAATTATGA
* * * * * *
4276860 AAGTATTAGTTTAATTTTATTTATTTATTTTCAAAAAATA-CCTTTCGTACGTTAAT-AGAAACC
1 AAGTGTTAATTTAATTTAATTTATTTATTTTCGAAAAATATCATTTCGTACCTTAATGA-AAACC
* *
4276923 TGAAAAGATACGAAAAGTTTTTGAAATCTTTTATACCCTTACAGACTCCTATAGAAATATAAAAG
65 TGAAAAGATACGAAAAG-TTTTGAAATCTTTTATACCCTTACAGACTCCCATAGGAATATAAAAG
* *
4276988 ATTAGAAAAATGATTAATATTTATTTCAATTATGA
129 ATTA-AAAAAT-ATTAATATTCATCTCAATTATGA
* *
4277023 AAGTGCTAATTTAATTTAATTTATTTATTTTCGAAAAATATCATTTCGTACCTTAATGAAAATCT
1 AAGTGTTAATTTAATTTAATTTATTTATTTTCGAAAAATATCATTTCGTACCTTAATGAAAACCT
* * *
4277088 GAAAAGATACAAAAAGTTTTGAAATCTTTTATACCCCTAC-GAATACCCATAGGAATATAAAAGA
66 GAAAAGATACGAAAAGTTTTGAAATCTTTTATACCCTTACAGACT-CCCATAGGAATATAAAAGA
4277152 TTAAAAAATAATTAATATT
130 TTAAAAAAT-ATTAATATT
4277171 AAAATATCTT
Statistics
Matches: 262, Mismatches: 36, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
159 79 0.30
160 27 0.10
161 2 0.01
162 24 0.09
163 94 0.36
164 35 0.13
165 1 0.00
ACGTcount: A:0.41, C:0.11, G:0.10, T:0.37
Consensus pattern (161 bp):
AAGTGTTAATTTAATTTAATTTATTTATTTTCGAAAAATATCATTTCGTACCTTAATGAAAACCT
GAAAAGATACGAAAAGTTTTGAAATCTTTTATACCCTTACAGACTCCCATAGGAATATAAAAGAT
TAAAAAATATTAATATTCATCTCAATTATGA
Found at i:4277970 original size:21 final size:21
Alignment explanation
Indices: 4277931--4277996 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 21
4277921 ACTAGCTTAG
* *
4277931 TTTTCTA-TTTTTCTACCTTT
1 TTTTCTATTTTTTTTTCCTTT
4277951 TTTTCTATTTTTTTTTCCTTT
1 TTTTCTATTTTTTTTTCCTTT
* * * * *
4277972 CTTTCTCTCTTTCTTTCTTTT
1 TTTTCTATTTTTTTTTCCTTT
4277993 TTTT
1 TTTT
4277997 TAGCTGATCA
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
20 7 0.19
21 30 0.81
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTCTATTTTTTTTTCCTTT
Found at i:4287393 original size:70 final size:71
Alignment explanation
Indices: 4287317--4287477 Score: 179
Period size: 71 Copynumber: 2.3 Consensus size: 71
4287307 CCCTTAGAGG
* * * *
4287317 AATGGGG-CTAGAGTGTTCCT-GACGATGATAATT-TAGACGAAAATAAGATTTAAATCTTGA-T
1 AATGGGGTCTAGAGT-ATCCTCGACGATGATAATTAAAG-CAAAAATAAGATTTAAATCTTGACG
4287378 AAGTTTAAA
64 AA-TTTAAA
* * *
4287387 AATGGGGTTTGGAGTATCCTCGATGATGATAATTAAAGCAAAAATAAGATTTAAATCTTGACGAA
1 AATGGGGTCTAGAGTATCCTCGACGATGATAATTAAAGCAAAAATAAGATTTAAATCTTGACGAA
*
4287452 TTTAGA
66 TTTAAA
*
4287458 AATGGGGT-TGGAGTATCCTC
1 AATGGGGTCTAGAGTATCCTC
4287478 ATGAATTTTT
Statistics
Matches: 79, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
70 23 0.29
71 52 0.66
72 4 0.05
ACGTcount: A:0.37, C:0.09, G:0.23, T:0.31
Consensus pattern (71 bp):
AATGGGGTCTAGAGTATCCTCGACGATGATAATTAAAGCAAAAATAAGATTTAAATCTTGACGAA
TTTAAA
Found at i:4289987 original size:20 final size:21
Alignment explanation
Indices: 4289955--4290006 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
4289945 ATAAGGTCCA
* * *
4289955 GTATCGATGCATTCACTT-AT
1 GTATTGATACATTAACTTGAT
*
4289975 GTATTGATACATTAACTTGTT
1 GTATTGATACATTAACTTGAT
4289996 GTATTGATACA
1 GTATTGATACA
4290007 AATTGTAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 15 0.56
21 12 0.44
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.42
Consensus pattern (21 bp):
GTATTGATACATTAACTTGAT
Found at i:4290437 original size:21 final size:21
Alignment explanation
Indices: 4290413--4290465 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 21
4290403 TATGGGTAAA
4290413 TTAATTATTTATATAAT-TAAT
1 TTAA-TATTTATATAATCTAAT
* *
4290434 TTAAT-TTTAAATAATCTTAT
1 TTAATATTTATATAATCTAAT
4290454 TTAAATATTTAT
1 TT-AATATTTAT
4290466 TTATAAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
19 9 0.35
20 6 0.23
21 7 0.27
22 4 0.15
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
TTAATATTTATATAATCTAAT
Found at i:4292203 original size:24 final size:23
Alignment explanation
Indices: 4292185--4292240 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
4292175 GAAAAGAATG
4292185 GAAAATAAAAAAATCAAAAGCAA
1 GAAAATAAAAAAATCAAAAGCAA
*
4292208 GAAAATAAAAAAAAT-AAAA-AAA
1 GAAAAT-AAAAAAATCAAAAGCAA
4292230 G-AAATAAAAAA
1 GAAAATAAAAAA
4292241 TCCTACTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
20 6 0.19
21 4 0.13
22 3 0.10
23 10 0.32
24 8 0.26
ACGTcount: A:0.80, C:0.04, G:0.07, T:0.09
Consensus pattern (23 bp):
GAAAATAAAAAAATCAAAAGCAA
Found at i:4293643 original size:19 final size:19
Alignment explanation
Indices: 4293619--4293686 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
4293609 AATTCAACGA
4293619 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
4293638 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
4293653 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
4293670 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
4293687 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:4293657 original size:32 final size:32
Alignment explanation
Indices: 4293621--4293683 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
4293611 TTCAACGATT
*
4293621 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
4293653 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
4293684 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:4293658 original size:13 final size:13
Alignment explanation
Indices: 4293640--4293664 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4293630 ACATAAGTTT
4293640 TGTATCGATACAA
1 TGTATCGATACAA
4293653 TGTATCGATACA
1 TGTATCGATACA
4293665 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4293744 original size:13 final size:13
Alignment explanation
Indices: 4293726--4293751 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4293716 CATTTTTCTA
4293726 TGTATCGATACAT
1 TGTATCGATACAT
4293739 TGTATCGATACAT
1 TGTATCGATACAT
4293752 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4293748 original size:33 final size:33
Alignment explanation
Indices: 4293706--4293772 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
4293696 GCCAAGGAAA
***
4293706 TGTATCGATACATTTTTCTATGTATCGATACAT
1 TGTATCGATACATGGATCTATGTATCGATACAT
*
4293739 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTATGTATCGATACAT
4293772 T
1 T
4293773 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTATGTATCGATACAT
Found at i:4296186 original size:51 final size:53
Alignment explanation
Indices: 4296117--4296458 Score: 199
Period size: 52 Copynumber: 6.5 Consensus size: 53
4296107 AGTTTATCAA
* * * * *
4296117 TTCTCCACAATCGAGGATATTCCAACTCCGATTTTATTTTC-AAAACACTAA-
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
* *
4296168 TT-TTCTATAATCGGGGATACTCTAACTCCGATTTTATTTCCAAAAAACACCAAT
1 TTCTTC-ACAATCGGGGATACTCCAACTCCGATTTTATTTCC-AAAAACACCAAT
* * * *** * * *
4296222 TTCTTCACAATCGGGGATACTCCAACCCCG--TTAATCATCGGGGATACTCCAAC
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTAT-TTC-CAAAAACACCAAT
** *** * * *
4296275 CCCGTT-ATTTTCGAGGGGATACTCCAACTCCGGTTTTA--TCGCTAAAACACTAAT
1 TTC-TTCACAATC--GGGGATACTCCAACTCCGATTTTATTTC-CAAAAACACCAAT
* * *
4296329 TT-TTCCACAATCGGGGATACTCCAA-TCCTGGTTTTATTTTC-AAAACGCCAATT
1 TTCTT-CACAATCGGGGATACTCCAACTCC-GATTTTATTTCCAAAAACACCAA-T
* * *
4296382 TTCCTT--TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACTAAT
1 TT-CTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
*
4296434 TT-TTCACAATCGAGGATACTCCAAC
1 TTCTTCACAATCGGGGATACTCCAAC
4296459 CTCGTTATTT
Statistics
Matches: 219, Mismatches: 48, Indels: 47
0.70 0.15 0.15
Matches are distributed among these distances:
50 4 0.02
51 35 0.16
52 81 0.37
53 36 0.16
54 38 0.17
55 22 0.10
57 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (53 bp):
TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
Found at i:4296344 original size:107 final size:106
Alignment explanation
Indices: 4296180--4296572 Score: 345
Period size: 107 Copynumber: 3.7 Consensus size: 106
4296170 TTCTATAATC
* *
4296180 GGGGATACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCC
1 GGGGATACTCCAACTCCGATTTTA-TTCC-AAAAACACTAATTT-TTCACAATCGGGGATACTCC
4296245 AACCCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTTCGA
63 AACCCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTTCGA
* *
4296289 GGGGATACTCCAACTCCGGTTTTA-TCGCTAAAACACTAATTTTTCCACAATCGGGGATACTCCA
1 GGGGATACTCCAACTCCGATTTTATTC-CAAAAACACTAATTTTT-CACAATCGGGGATACTCCA
** * ** * * * ** **
4296353 ATCCTGGTTTTATTTTC---AAAACGCCAATTTTCC-TT-TAATC--
64 A-CCCCG-TTAATCATCGGGGATACTCCAA--CCCCGTTATTTTCGA
* *
4296393 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACTAATTTTTCACAATCGAGGATACTCCAA
1 GGGGATACTCCAACTCCGATTTTA-TTCCAAAAACACTAATTTTTCACAATCGGGGATACTCCAA
* * * *
4296458 CCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGA
65 CCCCGTTA-ATCATCGGGGATACTCCAACCCCGTTATTTTCGA
** * * * * * *
4296501 GGGGATACTCCAAC-CCTGGCTTTATTCCCAAAATATTAATTTCTCATAATTGGGGATACTCCAA
1 GGGGATACTCCAACTCC-GATTTTATTCCAAAAACACTAATTTTTCACAATCGGGGATACTCCAA
4296565 CCCCGTTA
65 CCCCGTTA
4296573 TTTTCGAAGG
Statistics
Matches: 224, Mismatches: 43, Indels: 36
0.74 0.14 0.12
Matches are distributed among these distances:
102 2 0.01
103 7 0.03
104 44 0.20
105 17 0.08
106 22 0.10
107 79 0.35
108 25 0.11
109 28 0.12
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (106 bp):
GGGGATACTCCAACTCCGATTTTATTCCAAAAACACTAATTTTTCACAATCGGGGATACTCCAAC
CCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTTCGA
Found at i:4296442 original size:104 final size:103
Alignment explanation
Indices: 4296122--4296457 Score: 297
Period size: 104 Copynumber: 3.2 Consensus size: 103
4296112 ATCAATTCTC
* * * *
4296122 CACAATCGAGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTT-CTATAATCGGGGAT
1 CACAATCGAGGATACTCCAA-TCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGAT
* *
4296186 ACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTT
65 ACTCCAACTCCGATTTTATTTCC-AAAAACACTAATTT-TT
* * * * ** * * * ** **
4296227 CACAATCGGGGATACTCCAACCCCG-TTAATCATCGGGGATACTCCAA--CCCCGTTATTTTCGA
1 CACAATCGAGGATACTCCAATCCGGTTTTATTTTC---AAAACACCAATTTTCC-TT-TAATC--
* *
4296289 GGGGATACTCCAACTCCGGTTTTA--TCGCTAAAACACTAATTTTT
59 GGGGATACTCCAACTCCGATTTTATTTC-CAAAAACACTAATTTTT
* *
4296333 CCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGGGA
1 -CACAATCGAGGATACTCCAATCC-GGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGA
*
4296398 TACTCCAACTCCGATTTTATTTCCAAAAATACTAATTTTT
64 TACTCCAACTCCGATTTTATTTCCAAAAACACTAATTTTT
4296438 CACAATCGAGGATACTCCAA
1 CACAATCGAGGATACTCCAA
4296458 CCTCGTTATT
Statistics
Matches: 178, Mismatches: 37, Indels: 33
0.72 0.15 0.13
Matches are distributed among these distances:
103 6 0.03
104 44 0.25
105 34 0.19
106 21 0.12
107 41 0.23
108 4 0.02
109 28 0.16
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.32
Consensus pattern (103 bp):
CACAATCGAGGATACTCCAATCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATA
CTCCAACTCCGATTTTATTTCCAAAAACACTAATTTTT
Found at i:4296478 original size:28 final size:28
Alignment explanation
Indices: 4296442--4296516 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 28
4296432 ATTTTTCACA
* * *
4296442 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
4296470 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
***
4296498 CGAGGGGATACTCCAACCC
1 ATCGGGGATACTCCAACCC
4296517 TGGCTTTATT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:4296487 original size:212 final size:212
Alignment explanation
Indices: 4296120--4296514 Score: 616
Period size: 212 Copynumber: 1.9 Consensus size: 212
4296110 TTATCAATTC
* *
4296120 TCCACAATCGAGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGAGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
* *
4296185 TACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCC
66 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
* *
4296250 CGTTAATCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACTCCGGTTTTATC
131 CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACTCCGGTTTTATC
4296315 GCTAAAACACTAATTTT
196 GCTAAAACACTAATTTT
* * * *
4296332 TCCACAATCGGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGG
1 TCCACAATCGAGGATACTCCAACTCC-GATTTTATTTTCAAAACACCAATTTT-CTATAATCGGG
* *
4296396 GATACTCCAACTCCGATTTTATTTCC-AAAAATACTAATTT-TTCACAATCGAGGATACTCCAAC
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAAC
* *
4296459 CTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAAC
129 CCCGTTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAAC
4296515 CCTGGCTTTA
Statistics
Matches: 166, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
211 31 0.19
212 100 0.60
213 35 0.21
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (212 bp):
TCCACAATCGAGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACTCCGGTTTTATC
GCTAAAACACTAATTTT
Found at i:4306258 original size:79 final size:79
Alignment explanation
Indices: 4306127--4306346 Score: 210
Period size: 79 Copynumber: 2.8 Consensus size: 79
4306117 ATCAGGGTTG
** ** ** * *
4306127 GAGTATCCCCGATTACAAAAAATTGATGCTTTAGAAATAAGGCC-AGGGTTGGAGTATCCCCGCC
1 GAGTATCCCCGATTATGAAAAATCAATATTTTAGAAATAAAGCCGA-GGTTGGAGTATCCCCGCA
4306191 AAAATAACAAGG-TAA
65 AAAATAAC-AGGATAA
* * * * *
4306206 GAGTATCCCTGATTGTGAGAAATCAATATTTTAGAAATAAAGTCGAGGTTGGAGTATCCCCTCAA
1 GAGTATCCCCGATTATGAAAAATCAATATTTTAGAAATAAAGCCGAGGTTGGAGTATCCCCGCAA
* **
4306271 AAATAACGGGATTG
66 AAATAACAGGATAA
** * * * *
4306285 GAGTATCCCCGATTATGAAAAATTGATGTTTTGGAAATAAAACCGGGGTTGGAGTATCCCCG
1 GAGTATCCCCGATTATGAAAAATCAATATTTTAGAAATAAAGCCGAGGTTGGAGTATCCCCG
4306347 AGATGAAAAA
Statistics
Matches: 112, Mismatches: 27, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
78 2 0.02
79 109 0.97
80 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.25
Consensus pattern (79 bp):
GAGTATCCCCGATTATGAAAAATCAATATTTTAGAAATAAAGCCGAGGTTGGAGTATCCCCGCAA
AAATAACAGGATAA
Found at i:4306373 original size:50 final size:50
Alignment explanation
Indices: 4306277--4306408 Score: 167
Period size: 50 Copynumber: 2.6 Consensus size: 50
4306267 TCAAAAATAA
* * ** * *
4306277 CGGGATTGGAGTATCCCCGATTATGAAAAATTGATGTTTTGGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGA-GATGAAAAATCAATATTTTAGAAATAAAAC
**
4306328 CGGGGTTGGAGTATCCCCGAGATGAAAAATCAATATTTTAGAAATAAAGT
1 CGGGGTTGGAGTATCCCCGAGATGAAAAATCAATATTTTAGAAATAAAAC
4306378 CGGGGTTAGG-GTATCCCCGAGATGAAAAATC
1 CGGGGTT-GGAGTATCCCCGAGATGAAAAATC
4306409 TAGAAATTTA
Statistics
Matches: 72, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
50 51 0.71
51 21 0.29
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.26
Consensus pattern (50 bp):
CGGGGTTGGAGTATCCCCGAGATGAAAAATCAATATTTTAGAAATAAAAC
Found at i:4309385 original size:13 final size:13
Alignment explanation
Indices: 4309367--4309392 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4309357 ACAATGAACT
4309367 TGTATCGATACAA
1 TGTATCGATACAA
4309380 TGTATCGATACAA
1 TGTATCGATACAA
4309393 AGAAACTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4309391 original size:32 final size:33
Alignment explanation
Indices: 4309347--4309410 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
4309337 ATAATTCTTC
* *
4309347 ATGTATCAATACAATG-AACTTGTATCGATACA
1 ATGTATCAATACAAAGAAACTTGTATCAATACA
*
4309379 ATGTATCGATACAAAGAAACTTGTATCAATAC
1 ATGTATCAATACAAAGAAACTTGTATCAATAC
4309411 TTTTGGGCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.50
33 14 0.50
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (33 bp):
ATGTATCAATACAAAGAAACTTGTATCAATACA
Found at i:4317623 original size:32 final size:33
Alignment explanation
Indices: 4317579--4317641 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
4317569 TACCAGTTTC
* * *
4317579 ATGTATCGATACAATG-AACATGTATTGATATA
1 ATGTATCAATACAAAGCAACATGTATCGATATA
4317611 ATGTATCAATACAAAGCAACATGTATCGATA
1 ATGTATCAATACAAAGCAACATGTATCGATA
4317642 CTTCTAGGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 14 0.52
33 13 0.48
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.30
Consensus pattern (33 bp):
ATGTATCAATACAAAGCAACATGTATCGATATA
Found at i:4325785 original size:23 final size:23
Alignment explanation
Indices: 4325756--4325813 Score: 100
Period size: 23 Copynumber: 2.5 Consensus size: 23
4325746 ATCATAATGG
4325756 GTATTGATACATCC-TATGGATTT
1 GTATTGATACA-CCTTATGGATTT
4325779 GTATTGATACACCTTATGGATTT
1 GTATTGATACACCTTATGGATTT
4325802 GTATTGATACAC
1 GTATTGATACAC
4325814 AAGCTTGTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 2 0.06
23 32 0.94
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (23 bp):
GTATTGATACACCTTATGGATTT
Found at i:4327270 original size:74 final size:72
Alignment explanation
Indices: 4326608--4327582 Score: 522
Period size: 74 Copynumber: 13.5 Consensus size: 72
4326598 ATTGTGTAGA
* * * * * * *
4326608 CTTTGAAG-AAAAAAAGACGTTC-TGCTCTTTGAGGACTAGAAAATATAAGTGATGCCACCAACT
1 CTTTGAAGAAAAAAAAGGC-ATCATGCTCTTTGAGGACTAAAAAAGATAAATGATGCCACTAGCT
**
4326671 TATGTAAG
65 TATGTGGG
* * * * ** *
4326679 CTTTGAAAAAGAAGAAAAAAATG--TCATGCTATTTAAGGACTAGAAAAGATAAGGGATGCCACC
1 CTTTG---AAG-A-AAAAAAAGGCATCATGCTCTTTGAGGACTAAAAAAGATAAATGATGCCACT
4326742 AGCCTT-TGTGGG
61 AG-CTTATGTGGG
* * * * * * * *
4326754 CTTTAAAGAATAAGAAAATGCGTCATGCTCTTTAAGGACTAAGAAAGATAAGTGAAGCCACCAGC
1 CTTTGAAGAA-AA-AAAAGGCATCATGCTCTTTGAGGACTAAAAAAGATAAATGATGCCACTAGC
* *
4326819 TTGTGTGAG
64 TTATGTGGG
* * * * * * ** *
4326828 CTTTGAAGAAGAAGAAAATGCACCATGCTCCTTGAGAATTGGAAAAA-ATAACGGATGCTACTAG
1 CTTTGAAGAA-AA-AAAAGGCATCATGCTCTTTGAGGACT-AAAAAAGATAAATGATGCCACTAG
* * *
4326892 TTTGTATGGG
63 CTTATGTGGG
* * ** * *
4326902 TTTTGAAGAAGAAAAAAAGGCATCCTGCTCTTTGAGGACTAGGAAAGATAAGTGATGCCACTAGT
1 CTTTGAAG-A-AAAAAAAGGCATCATGCTCTTTGAGGACTAAAAAAGATAAATGATGCCACTAGC
4326967 TTATGTGGG
64 TTATGTGGG
* * * * * *** *
4326976 CTTT---GAAAAAAAATG--TCTTACTCTTTGA-GATTGAAGTGGATAAGTGATGCCACTAGCTT
1 CTTTGAAGAAAAAAAAGGCATCATGCTCTTTGAGGACTAAAAAAGATAAATGATGCCACTAGCTT
*
4327035 GTGTGGG
66 ATGTGGG
* *
4327042 CTTTGAAGAAAAAAAAGGCATCATGCTCTTTGAGGACTAAAAAAAATAAATGATGCCACCAGCTT
1 CTTTGAAGAAAAAAAAGGCATCATGCTCTTTGAGGACTAAAAAAGATAAATGATGCCACTAGCTT
*
4327107 GTGTGGG
66 ATGTGGG
* * * * * *
4327114 CTTTG-AGAAAAAAAA-G--TCATGTTCTTTAAGAACT-GAAGAGAATAAGTGATGCCA-TCAGC
1 CTTTGAAGAAAAAAAAGGCATCATGCTCTTTGAGGACTAAAAAAG-ATAAATGATGCCACT-AGC
*
4327173 TTATGTGGC
64 TTATGTGGG
* * *
4327182 CTTTGAA-AAGAAAGAAGAGGCATCTTGCTCTTTGAGGACTAAAAAAGATAAATGATACCAATAG
1 CTTTGAAGAA-AAA-AA-AGGCATCATGCTCTTTGAGGACTAAAAAAGATAAATGATGCCACTAG
* *
4327246 TTTATGTGAG
63 CTTATGTGGG
* * * * * *
4327256 TTTTGAAGAAAAAGAAAAGGCATCCTACTCTTTGAGGACTGAAAAATATAAATGATGCCAC-CGA
1 CTTTGAAG-AAAA-AAAAGGCATCATGCTCTTTGAGGACTAAAAAAGATAAATGATGCCACTAG-
* *
4327320 CTTATATAGG
63 CTTATGTGGG
** * ** * *
4327330 CTTT---GAAAAAAAAGGCATGTTGCTCTTTGAGGATTGGAAAAGATAAATGATGCCACAAGTTT
1 CTTTGAAGAAAAAAAAGGCATCATGCTCTTTGAGGACTAAAAAAGATAAATGATGCCACTAGCTT
* * *
4327392 GTATGGC
66 ATGTGGG
* * * * ** * *
4327399 CTTTGAAGAAAAAGAAAAAGGCATCTTACTCTTTAAAGACTGGAAAAGATAAATGTTGCCACCAG
1 CTTTGAAG--AAA-AAAAAGGCATCATGCTCTTTGAGGACTAAAAAAGATAAATGATGCCACTAG
*
4327464 CTGATGTGGG
63 CTTATGTGGG
* ** * * * * * * * *
4327474 CTTTGAAGAAAAAAAATGTGTCTTACTCTATAAGGACTGAAAAAG-TAAATGATGCCACCACCTC
1 CTTTGAAGAAAAAAAAGGCATCATGCTCTTTGAGGACTAAAAAAGATAAATGATGCCACTAGCTT
* **
4327538 GTGTGCC
66 ATGTGGG
* * *
4327545 CTTTGAAGAAAAAGAAAAGGCATCCTACTTTTTGAGGA
1 CTTTGAAG-AAAA-AAAAGGCATCATGCTCTTTGAGGA
4327583 TTGAAATAGA
Statistics
Matches: 708, Mismatches: 149, Indels: 92
0.75 0.16 0.10
Matches are distributed among these distances:
66 33 0.05
67 14 0.02
68 44 0.06
69 73 0.10
70 10 0.01
71 60 0.08
72 78 0.11
73 27 0.04
74 240 0.34
75 115 0.16
76 7 0.01
77 7 0.01
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (72 bp):
CTTTGAAGAAAAAAAAGGCATCATGCTCTTTGAGGACTAAAAAAGATAAATGATGCCACTAGCTT
ATGTGGG
Found at i:4327278 original size:354 final size:359
Alignment explanation
Indices: 4326702--4327489 Score: 841
Period size: 354 Copynumber: 2.2 Consensus size: 359
4326692 GAAAAAAATG
* ** *
4326702 TCATGCTATTTAAGGACTAGAAAAGATAAGGGATGCCACCAGCCTT-TGTGGGCTTTAAAGAATA
1 TCATGCTCTTTAAGGACTAGAAAAGATAAATGATGCCACCAG-CTTGTGTGGGCTTT-GAGAA-A
* *
4326766 AGAAAATGCGTCATGCTCTTTAAGGACTAAGAAAGATAAGTGAAGCCACCAGCTTGTGTGAGCTT
63 A-AAAA--CGTCATGCTCTTTAAGAACTAAGAAAGATAAGTGAAGCCACCAGCTTATGTGAGCTT
* * * * * * * *
4326831 TGAAGAAGAAGAAAATGCACCATGCTCCTTGAGAATTGGAAAAAATAACGGATGCTACTAGTTTG
125 TGAAGAAGAAGAAAAGGCACCATGCTCCTTGAGAACTGAAAAAAATAAAGGATACCAATAGTTTA
* * * *
4326896 TATGGGTTTTGAAGAAGAAAAAAAGGCATCCTGCTCTTTGAGGACT-AGGAAAGATAAGTGATGC
190 TATGAGTTTTGAAGAAGAAAAAAAGGCATCCTACTCTTTGAGGACTGA-AAAAGATAAATGATGC
* * * * ** *
4326960 CACTAG-TTTATGTGGGCTTTGAAAAAAAATG-TCTTACTCTTTGA-GATT-GAAGTGGATAAGT
254 CAC-AGACTTATATAGGCTTTGAAAAAAAAGGATCTTACTCTTTGAGGATTGGAA-AAGATAAAT
* * *
4327021 GATGCCACTAGCTTGTGTGGGCTTTGAAG-AAA-AAAAAGGCA
317 GATGCCACAAGCTTGTATGGCCTTTGAAGAAAAGAAAAAGGCA
* * *
4327062 TCATGCTCTTTGAGGACTAAAAAAAATAAATGATGCCACCAGCTTGTGTGGGCTTTGAGAAAAAA
1 TCATGCTCTTTAAGGACTAGAAAAGATAAATGATGCCACCAGCTTGTGTGGGCTTTGAGAAAAAA
* * * *
4327127 AA-GTCATGTTCTTTAAGAACTGAAGAGA-ATAAGTGATGCCATCAGCTTATGTG-GCCTTTGAA
66 AACGTCATGCTCTTTAAGAACT-AAGAAAGATAAGTGAAGCCACCAGCTTATGTGAG-CTTTGAA
* * * * * * *
4327189 -AAGAAAGAAGAGGCATCTTGCTCTTTGAGGACT-AAAAAAGATAAATGATACCAATAGTTTATG
129 GAAG-AAGAAAAGGCACCATGCTCCTTGAGAACTGAAAAAA-ATAAAGGATACCAATAGTTTATA
*
4327252 TGAGTTTTGAAGAA-AAAGAAAAGGCATCCTACTCTTTGAGGACTGAAAAATATAAATGATGCCA
192 TGAGTTTTGAAGAAGAAA-AAAAGGCATCCTACTCTTTGAGGACTGAAAAAGATAAATGATGCCA
* * *
4327316 CCGACTTATATAGGCTTTGAAAAAAAAGGCATGTTGCTCTTTGAGGATTGGAAAAGATAAATGAT
256 CAGACTTATATAGGCTTTGAAAAAAAAGG-ATCTTACTCTTTGAGGATTGGAAAAGATAAATGAT
*
4327381 GCCACAAGTTTGTATGGCCTTTGAAGAAAAAGAAAAAGGCA
320 GCCACAAGCTTGTATGGCCTTTGAAG-AAAAGAAAAAGGCA
* * * * *
4327422 TCTTACTCTTTAAAGACTGGAAAAGATAAATGTTGCCACCAGC-TGATGTGGGCTTTGAAGAAAA
1 TCATGCTCTTTAAGGACTAGAAAAGATAAATGATGCCACCAGCTTG-TGTGGGCTTTG-AGAAAA
4327486 AAAA
64 AAAA
4327490 TGTGTCTTAC
Statistics
Matches: 356, Mismatches: 55, Indels: 33
0.80 0.12 0.07
Matches are distributed among these distances:
353 13 0.04
354 159 0.45
355 6 0.02
356 11 0.03
357 39 0.11
358 5 0.01
359 12 0.03
360 101 0.28
361 10 0.03
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.26
Consensus pattern (359 bp):
TCATGCTCTTTAAGGACTAGAAAAGATAAATGATGCCACCAGCTTGTGTGGGCTTTGAGAAAAAA
AACGTCATGCTCTTTAAGAACTAAGAAAGATAAGTGAAGCCACCAGCTTATGTGAGCTTTGAAGA
AGAAGAAAAGGCACCATGCTCCTTGAGAACTGAAAAAAATAAAGGATACCAATAGTTTATATGAG
TTTTGAAGAAGAAAAAAAGGCATCCTACTCTTTGAGGACTGAAAAAGATAAATGATGCCACAGAC
TTATATAGGCTTTGAAAAAAAAGGATCTTACTCTTTGAGGATTGGAAAAGATAAATGATGCCACA
AGCTTGTATGGCCTTTGAAGAAAAGAAAAAGGCA
Found at i:4327313 original size:216 final size:217
Alignment explanation
Indices: 4327036--4327567 Score: 521
Period size: 216 Copynumber: 2.5 Consensus size: 217
4327026 CACTAGCTTG
* * *
4327036 TGTGGGCTTTGAAG-AAAAAAAAGGCATCATGCTCTTTGAGGACTAAAAAAAATAAATGATGCCA
1 TGTGAGCTTTGAAGAAAAAAAAAGGCATCATACTCTTTGAGGACT-GAAAAAATAAATGATGCCA
* * *
4327100 CCAGCTTGTGTGGGCTTTGAGAAAAAAAAGTCATG-T-TCTTTAAGAACT-GAAGAGAATAAGTG
65 CCAGCTTGTGTGGGCTTTGAGAAAAAAAAGGCATGTTCTCTTTAAGAACTGGAAAAG-ATAAATG
* * * * *
4327162 ATGCCATC-AGCTTATGTGGCCTTTGAA-AAGAAAG-AAGAGGCATCTTGCTCTTTGAGGACTAA
129 ATGCCA-CAAGCTTATATGGCCTTTGAAGAA-AAAGAAAAAGGCATCTTACTCTTTAAAGACTAA
* * *
4327224 AAAAGATAAATGATACCAATAGTTTA
192 AAAAGATAAATGATACCAACAGCTGA
* *
4327250 TGTGAGTTTTGAAGAAAAAGAAAAGGCATCCTACTCTTTGAGGACTGAAAAATATAAATGATGCC
1 TGTGAGCTTTGAAGAAAAA-AAAAGGCATCATACTCTTTGAGGACTGAAAAA-ATAAATGATGCC
* * * * * *
4327315 ACC-GACTTATATAGGCTTT--GAAAAAAAAGGCATGTTGCTCTTTGAGGATTGGAAAAGATAAA
64 ACCAG-CTTGTGTGGGCTTTGAGAAAAAAAAGGCATGTT-CTCTTTAAGAACTGGAAAAGATAAA
* * **
4327377 TGATGCCACAAGTTTGTATGGCCTTTGAAGAAAAAGAAAAAGGCATCTTACTCTTTAAAGACTGG
127 TGATGCCACAAGCTTATATGGCCTTTGAAGAAAAAGAAAAAGGCATCTTACTCTTTAAAGACTAA
* * *
4327442 AAAAGATAAATGTTGCCACCAGCTGA
192 AAAAGATAAATGATACCAACAGCTGA
* * * * * *
4327468 TGTGGGCTTTGAAGAAAAAAAATGTG--TCTTACTCTATAAGGACTGAAAAAGTAAATGATGCCA
1 TGTGAGCTTTGAAGAAAAAAAAAG-GCATCATACTCTTTGAGGACTGAAAAAATAAATGATGCCA
* * **
4327531 CCACCTCGTGTGCCCTTTGAAGAAAAAGAAAAGGCAT
65 CCAGCTTGTGTGGGCTTTG-AG-AAAA-AAAAGGCAT
4327568 CCTACTTTTT
Statistics
Matches: 257, Mismatches: 43, Indels: 30
0.78 0.13 0.09
Matches are distributed among these distances:
214 26 0.10
215 33 0.13
216 72 0.28
217 45 0.18
218 68 0.26
219 4 0.02
220 9 0.04
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (217 bp):
TGTGAGCTTTGAAGAAAAAAAAAGGCATCATACTCTTTGAGGACTGAAAAAATAAATGATGCCAC
CAGCTTGTGTGGGCTTTGAGAAAAAAAAGGCATGTTCTCTTTAAGAACTGGAAAAGATAAATGAT
GCCACAAGCTTATATGGCCTTTGAAGAAAAAGAAAAAGGCATCTTACTCTTTAAAGACTAAAAAA
GATAAATGATACCAACAGCTGA
Found at i:4327372 original size:143 final size:145
Alignment explanation
Indices: 4326909--4327573 Score: 403
Period size: 143 Copynumber: 4.7 Consensus size: 145
4326899 GGGTTTTGAA
* ** * * * *
4326909 GAAGAAAAAAAGGCATCCTGCTCTTTGAGGACTAGGAAAGATAAGTGATGCCACTAGTTTATGTG
1 GAAG-AAAAAAGGCATCTTGCTCTTTGAGGACTAAAAAAGATAAATGATACCACAAGTTTATATG
* * * * * *** * *
4326974 GGCTTT---G--AAA-AAAAATG--TCTTACTCTTT-GAGATTGAAGTGGATAAGTGATGCCACT
65 GCCTTTGAAGAAAAAGAAAAAGGCATCCTACTCTTTAAAGACTGAAAAAGATAAATGATGCCACC
* *
4327030 AGCTTG-TGTGGGCTTT
130 AGC-TGATATAGGCTTT
* * * * * * *
4327046 GAAGAAAAAAAAGGCATCATGCTCTTTGAGGACTAAAAAAAATAAATGATGCCACCAGCTTGTGT
1 GAAG--AAAAAAGGCATCTTGCTCTTTGAGGACTAAAAAAGATAAATGATACCACAAGTTTATAT
* * * * *
4327111 GGGCTTTG-AG--AAA-AAAAAGTCAT-GT--TCTTT-AAGAACTG-AAGAGAATAAGTGATGCC
64 GGCCTTTGAAGAAAAAGAAAAAGGCATCCTACTCTTTAAAG-ACTGAAAAAG-ATAAATGATGCC
* * *
4327167 ATCAGCTTATGT-GGCCTTT
127 ACCAGCTGATATAGG-CTTT
4327186 GAAAAGAAAGAAGAGGCATCTTGCTCTTTGAGGACTAAAAAAGATAAATGATACCA-ATAGTTTA
1 G--AAGAAA-AA-AGGCATCTTGCTCTTTGAGGACTAAAAAAGATAAATGATACCACA-AGTTTA
* * * * *
4327250 TGTGAG-TTTTGAAGAAAAAG-AAAAGGCATCCTACTCTTTGAGGACTGAAAAATATAAATGATG
61 TATG-GCCTTTGAAGAAAAAGAAAAAGGCATCCTACTCTTTAAAGACTGAAAAAGATAAATGATG
*
4327313 CCACC-GACTTATATAGGCTTT
125 CCACCAG-CTGATATAGGCTTT
* * ** * *
4327334 GAA-AAAAAAGGCATGTTGCTCTTTGAGGATTGGAAAAGATAAATGATGCCACAAGTTTGTATGG
1 GAAGAAAAAAGGCATCTTGCTCTTTGAGGACTAAAAAAGATAAATGATACCACAAGTTTATATGG
* * *
4327398 CCTTTGAAGAAAAAGAAAAAGGCATCTTACTCTTTAAAGACTGGAAAAGATAAATGTTGCCACCA
66 CCTTTGAAGAAAAAGAAAAAGGCATCCTACTCTTTAAAGACTGAAAAAGATAAATGATGCCACCA
* *
4327463 GCTGATGTGGGCTTT
131 GCTGATATAGGCTTT
* ** * * * * * * ** ** *
4327478 GAAGAAAAAAAATGTGTCTTACTCTATAAGGACTGAAAAAG-TAAATGATGCCACCACCTCGTGT
1 GAAG--AAAAAAGGCATCTTGCTCTTTGAGGACTAAAAAAGATAAATGATACCACAAGTTTATAT
*
4327542 GCCCTTTGAAGAAAAAG-AAAAGGCATCCTACT
64 GGCCTTTGAAGAAAAAGAAAAAGGCATCCTACT
4327574 TTTTGAGGAT
Statistics
Matches: 428, Mismatches: 67, Indels: 58
0.77 0.12 0.10
Matches are distributed among these distances:
137 4 0.01
138 59 0.14
139 12 0.03
140 39 0.09
141 3 0.01
142 57 0.13
143 62 0.14
144 59 0.14
145 29 0.07
146 37 0.09
147 27 0.06
148 33 0.08
149 7 0.02
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.26
Consensus pattern (145 bp):
GAAGAAAAAAGGCATCTTGCTCTTTGAGGACTAAAAAAGATAAATGATACCACAAGTTTATATGG
CCTTTGAAGAAAAAGAAAAAGGCATCCTACTCTTTAAAGACTGAAAAAGATAAATGATGCCACCA
GCTGATATAGGCTTT
Found at i:4329643 original size:20 final size:20
Alignment explanation
Indices: 4329618--4329671 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
4329608 TTTACCCAAA
4329618 TGTATCGATACATTGTTTAT
1 TGTATCGATACATTGTTTAT
4329638 TGTATCGATACATTGTTTAT
1 TGTATCGATACATTGTTTAT
*
4329658 TATATCGATACATT
1 TGTATCGATACATT
4329672 CTGGGTTTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.28, C:0.11, G:0.13, T:0.48
Consensus pattern (20 bp):
TGTATCGATACATTGTTTAT
Found at i:4329694 original size:70 final size:70
Alignment explanation
Indices: 4329574--4329717 Score: 200
Period size: 70 Copynumber: 2.1 Consensus size: 70
4329564 AATTTCTACT
* * *
4329574 GATACATTATTCATTGTATCAATACATTCTGGGTTTTACCCAAATGTATCGATACATTGTTT-AT
1 GATACATTATTCATTATATCAATACATTCTGGGTTTTACCCAAATATATCGATACATT-TTTCAA
4329638 TGTATC
65 TGTATC
* * * * *
4329644 GATACATTGTTTATTATATCGATACATTCTGGGTTTTACCTAGATATATCGATACATTTTTCAAT
1 GATACATTATTCATTATATCAATACATTCTGGGTTTTACCCAAATATATCGATACATTTTTCAAT
4329709 GTATC
66 GTATC
4329714 GATA
1 GATA
4329718 TATTCAGGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
69 3 0.05
70 62 0.95
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.43
Consensus pattern (70 bp):
GATACATTATTCATTATATCAATACATTCTGGGTTTTACCCAAATATATCGATACATTTTTCAAT
GTATC
Found at i:4332091 original size:79 final size:79
Alignment explanation
Indices: 4332008--4332541 Score: 589
Period size: 79 Copynumber: 6.8 Consensus size: 79
4331998 TACTTTCGAA
* ** * * *
4332008 GGGATACTCCAACCCCGGTTTTATTTTCAAAATATTGATTTTTCATAATCGGGGATACTCTAACC
1 GGGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTTCACAATCGAGGATACTCCAACC
*
4332073 CTGTTATTTCTGAG
66 CCGTTATTTCTGAG
* * * * *
4332087 GGGATACCCCAACCCCAGTTTTA-TTTCTAAAATACCAATTTTTCATAATCG-GAGATACTCCAA
1 GGGATACTCCAACCCCGGTTTTATTTTC-AAAACATCAATTTTTCACAATCGAG-GATACTCCAA
*
4332150 CCCCGTTATTTCCGAG
64 CCCCGTTATTTCTGAG
* * * *
4332166 GGGA-AGCTCCATCCCCGATTTTATTTTCAAAACATCAATTTTCCACAATCAAGGATACTCCAAC
1 GGGATA-CTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTTCACAATCGAGGATACTCCAAC
*
4332230 CCCGTTATTT-TCAAG
65 CCCGTTATTTCT-GAG
*** * * * *
4332245 GGGATACTCCAACCCTAATTTTCTTTCCAAAACACCAATTTTTCATAATCGAGGATACTCCAACC
1 GGGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTTCACAATCGAGGATACTCCAACC
4332310 CCGTTATTTCCT-AG
66 CCGTTATTT-CTGAG
* * * *
4332324 GGGATGCTCCAACCCCAGTTTTATTTTCAAAACATCAATTTTTCACAATTGAGGATACTCCAATC
1 GGGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTTCACAATCGAGGATACTCCAACC
4332389 CCGTTATTTCTGAG
66 CCGTTATTTCTGAG
* * * *
4332403 GAGATACACCAACCCCGGTTTTATTTTCAAAACA-CTGATTTTCCACAATC-AGGGATACTCCAA
1 GGGATACTCCAACCCCGGTTTTATTTTCAAAACATC-AATTTTTCACAATCGA-GGATACTCCAA
* *
4332466 CCTCGTTATTTCCGAG
64 CCCCGTTATTTCTGAG
* * * *
4332482 GGAATACTCCAACCTCGATTTTA-TTTCAAAAACATCAATTTTTCACCATCGAGGATACTC
1 GGGATACTCCAACCCCGGTTTTATTTTC-AAAACATCAATTTTTCACAATCGAGGATACTC
4332542 TAACTCCGAT
Statistics
Matches: 385, Mismatches: 55, Indels: 30
0.82 0.12 0.06
Matches are distributed among these distances:
78 14 0.04
79 362 0.94
80 8 0.02
81 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (79 bp):
GGGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTTCACAATCGAGGATACTCCAACC
CCGTTATTTCTGAG
Found at i:4332427 original size:237 final size:237
Alignment explanation
Indices: 4332045--4332541 Score: 655
Period size: 237 Copynumber: 2.1 Consensus size: 237
4332035 CAAAATATTG
* * *
4332045 ATTTTTCATAATCGGGGATACTCTAACCCTGTTATTTCTGAGGGGATACCCCAACCCCAGTTTTA
1 ATTTTTCATAATCGAGGATACTCCAACCCCGTTATTTCTGAGGGGATACCCCAACCCCAGTTTTA
* * * *
4332110 TTTCTAAAATACCAATTTTTCATAATCGGAGATACTCCAACCCCGTTATTTCCGAGGGGAAGCTC
66 TTTCTAAAACACCAATTTTTCACAATCGGAGATACTCCAACCCCGTTATTTCCGAGGAGAAGCAC
*
4332175 CATCCCCGATTTTATTTTCAAAACA-TCAATTTTCCACAATCAAGGATACTCCAACCCCGTTATT
131 CAACCCCGATTTTATTTTCAAAACACT-AATTTTCCACAATCAAGGATACTCCAACCCCGTTATT
* * * *
4332239 TTCAAGGGGATACTCCAACC-CTAATTTTCTTTCCAAAACACCA
195 TCCAAGGGAATACTCCAACCTC-AATTTTATTTCAAAAACACCA
* *
4332282 ATTTTTCATAATCGAGGATACTCCAACCCCGTTATTTCCT-AGGGGATGCTCCAACCCCAGTTTT
1 ATTTTTCATAATCGAGGATACTCCAACCCCGTTATTT-CTGAGGGGATACCCCAACCCCAGTTTT
* * * *
4332346 ATTT-TCAAAACATCAATTTTTCACAAT-TGAGGATACTCCAATCCCGTTATTTCTGAGGAGATA
65 ATTTCT-AAAACACCAATTTTTCACAATCGGA-GATACTCCAACCCCGTTATTTCCGAGGAGA-A
* * * *
4332409 -CACCAACCCCGGTTTTATTTTCAAAACACTGATTTTCCACAATCAGGGATACTCCAACCTCGTT
127 GCACCAACCCCGATTTTATTTTCAAAACACTAATTTTCCACAATCAAGGATACTCCAACCCCGTT
* * *
4332473 ATTTCCGAGGGAATACTCCAACCTCGATTTTATTTCAAAAACATCA
192 ATTTCCAAGGGAATACTCCAACCTCAATTTTATTTCAAAAACACCA
**
4332519 ATTTTTCACCATCGAGGATACTC
1 ATTTTTCATAATCGAGGATACTC
4332542 TAACTCCGAT
Statistics
Matches: 227, Mismatches: 27, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
236 3 0.01
237 219 0.96
238 5 0.02
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (237 bp):
ATTTTTCATAATCGAGGATACTCCAACCCCGTTATTTCTGAGGGGATACCCCAACCCCAGTTTTA
TTTCTAAAACACCAATTTTTCACAATCGGAGATACTCCAACCCCGTTATTTCCGAGGAGAAGCAC
CAACCCCGATTTTATTTTCAAAACACTAATTTTCCACAATCAAGGATACTCCAACCCCGTTATTT
CCAAGGGAATACTCCAACCTCAATTTTATTTCAAAAACACCA
Found at i:4332556 original size:51 final size:51
Alignment explanation
Indices: 4332497--4332596 Score: 164
Period size: 51 Copynumber: 2.0 Consensus size: 51
4332487 ACTCCAACCT
*
4332497 CGATTTTATTTCAAAAACATCAATTTTTCACCATCGAGGATACTCTAACTC
1 CGATTTTATTTCAAAAACATCAATTTTTCACAATCGAGGATACTCTAACTC
* * *
4332548 CGATTTTATTTCCAGAACATCGATTTTTCACAATCGAGGATACTCTAAC
1 CGATTTTATTTCAAAAACATCAATTTTTCACAATCGAGGATACTCTAAC
4332597 CCTGTTATTT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.32, C:0.23, G:0.10, T:0.35
Consensus pattern (51 bp):
CGATTTTATTTCAAAAACATCAATTTTTCACAATCGAGGATACTCTAACTC
Found at i:4332712 original size:78 final size:78
Alignment explanation
Indices: 4332534--4332717 Score: 214
Period size: 78 Copynumber: 2.3 Consensus size: 78
4332524 TCACCATCGA
* * *
4332534 GGATACTCTAACTCCGATTTTATTTCCAGAACATCGATTTTTCACAATCGAGGATACTCTAACCC
1 GGATACTCCAACCCCG-TTTTATTTCCAGAACATCGATTTTCCACAATCGAGGATACTCTAACCC
4332599 TGTTATTTTCGAGG
65 TGTTATTTTCGAGG
* * ** *
4332613 GGATACTCCAACCCTGGTTTATTTTTAGAACATCGATTTTCCACAATCG-GGAATACTCTAGTCC
1 GGATACTCCAACCCCGTTTTATTTCCAGAACATCGATTTTCCACAATCGAGG-ATACTCTA-ACC
4332677 C-GTTA-TTTCTGA-G
64 CTGTTATTTTC-GAGG
*
4332690 GGATACTCCAACCCCGTCTTTATCTCCA
1 GGATACTCCAACCCCGT-TTTATTTCCA
4332718 AAATATTAAA
Statistics
Matches: 88, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
77 22 0.25
78 50 0.57
79 16 0.18
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (78 bp):
GGATACTCCAACCCCGTTTTATTTCCAGAACATCGATTTTCCACAATCGAGGATACTCTAACCCT
GTTATTTTCGAGG
Found at i:4332752 original size:208 final size:207
Alignment explanation
Indices: 4332342--4332741 Score: 494
Period size: 209 Copynumber: 1.9 Consensus size: 207
4332332 CCAACCCCAG
* *
4332342 TTTTATTTTCAAAACATCAATTTTTCACAATTGAGGATACTCCAATCCCGTTATTTCTGAGGAGA
1 TTTTATTTCCAAAACATCAATTTTTCACAATCGAGGATACTCCAATCCCGTTATTTCTGAGGAGA
4332407 TACACCAACCCCGGTTTTATTTTCAAAACACTGATTTTCCACAATCAGGGATACTCCAACCTCGT
66 TACACCAACCCCGGTTTTATTTTCAAAACACTGATTTTCCACAATCAGGGATACTCCAACCTCGT
* * *
4332472 TATTTCCGAGGGAATACTCCAACCTCGATTTTATTTCAAAAACATCAATTTTTCACCATCGAGGA
131 TATTTCCGAGGGAATACTCCAACCCCGATTTTATCTCAAAAACATAAATTTTT--CCATCGAGGA
4332537 TACTCTAACTCCGA
194 TACTCTAACTCCGA
* * * *
4332551 TTTTATTTCCAGAACATCGATTTTTCACAATCGAGGATACTCTAA-CCCTGTTATTT-TCGAGGG
1 TTTTATTTCCAAAACATCAATTTTTCACAATCGAGGATACTCCAATCCC-GTTATTTCT-GAGGA
* * * * * *
4332614 GATACTCCAACCCTGG-TTTATTTTTAGAACA-TCGATTTTCCACAATC-GGGAATACTCTAGTC
64 GATACACCAACCCCGGTTTTATTTTCAAAACACT-GATTTTCCACAATCAGGG-ATACTCCA-AC
* * *
4332676 C-CGTTATTTCTGAGGG-ATACTCCAACCCCG-TCTTTATCTCCAAAATATTAAATTTTT-CATC
126 CTCGTTATTTCCGAGGGAATACTCCAACCCCGAT-TTTATCTCAAAAACA-TAAATTTTTCCATC
4332737 GAGGA
189 GAGGA
4332742 ATGTACTCTA
Statistics
Matches: 166, Mismatches: 18, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
205 9 0.05
206 1 0.01
207 29 0.17
208 60 0.36
209 67 0.40
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (207 bp):
TTTTATTTCCAAAACATCAATTTTTCACAATCGAGGATACTCCAATCCCGTTATTTCTGAGGAGA
TACACCAACCCCGGTTTTATTTTCAAAACACTGATTTTCCACAATCAGGGATACTCCAACCTCGT
TATTTCCGAGGGAATACTCCAACCCCGATTTTATCTCAAAAACATAAATTTTTCCATCGAGGATA
CTCTAACTCCGA
Found at i:4336569 original size:29 final size:29
Alignment explanation
Indices: 4336537--4336600 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
4336527 TTTTAGGCCA
*
4336537 TTTTAGGGTCAAAATGTAATTTTAAAAAG
1 TTTTAGGGTCAAAATGTAATTTCAAAAAG
* *
4336566 TTTTGGGGTCAAAATGTAATTTCGAAAAG
1 TTTTAGGGTCAAAATGTAATTTCAAAAAG
4336595 TTTTAG
1 TTTTAG
4336601 AAGATAATCG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.36, C:0.05, G:0.20, T:0.39
Consensus pattern (29 bp):
TTTTAGGGTCAAAATGTAATTTCAAAAAG
Found at i:4337037 original size:153 final size:156
Alignment explanation
Indices: 4336788--4337186 Score: 443
Period size: 157 Copynumber: 2.6 Consensus size: 156
4336778 CGAGTTAGTT
* *
4336788 TATGCCAAAGGTGTGCATTTAGGATAGGTTTATCCTTTTCCTTATCTTTTTTCATGTCCTTTAAG
1 TATGCCAAAGGTGTGCATTTAGGATAGGTTCATCCTTTT-CTTATCTTTTTT-GTGTCCTTTAAG
** * **
4336853 GTTACCAAGATACTTTCACGTCGACAATATACCTTAAGGGTATTTGGGTAATTTTCCTT-AAACT
64 GTTAAAAAGATACTTTCACGTCGACAATATACCCTAAGGCCATTTGGGTAA-TTTCCTTAAAACT
**
4336917 GAGTCC-TAGGTTATCACCGGGCCGCTTG
128 GAGTCCTTAGGTTATCACCAAGCCGCTTG
* *
4336945 TATGCTAAAGGTGTGCATTTAGGATAGGTTCA-CCTTTT-TTATCTTTTTTGTGTCCTTTAGGGT
1 TATGCCAAAGGTGTGCATTTAGGATAGGTTCATCCTTTTCTTATCTTTTTTGTGTCCTTTAAGGT
* * * *
4337008 TAAAAAGTTATTTTCACGTC-A-AAGGTATACCCTAAGGCCATTTTGGTAATTTCTTTAAAACTG
66 TAAAAAGATACTTTCACGTCGACAA--TATACCCTAAGGCCATTTGGGTAATTTCCTTAAAACTG
* * * *
4337071 AGTCCATTTTGGTTATCATCAAGTCGCTTT
129 AGTCC--TTAGGTTATCACCAAGCCGCTTG
* * * * *
4337101 TATGCCAAAGGTATCCATTTAGGATAGATTCATCCTTTTATTATC-TTTTTGTGTCTTTTAAGGT
1 TATGCCAAAGGTGTGCATTTAGGATAGGTTCATCCTTTTCTTATCTTTTTTGTGTCCTTTAAGGT
** *
4337165 TATTAAGATACTTTCACATCGA
66 TAAAAAGATACTTTCACGTCGA
4337187 ATGTACATCT
Statistics
Matches: 203, Mismatches: 30, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
151 2 0.01
152 7 0.03
153 59 0.29
154 11 0.05
156 50 0.25
157 68 0.33
158 6 0.03
ACGTcount: A:0.24, C:0.17, G:0.18, T:0.41
Consensus pattern (156 bp):
TATGCCAAAGGTGTGCATTTAGGATAGGTTCATCCTTTTCTTATCTTTTTTGTGTCCTTTAAGGT
TAAAAAGATACTTTCACGTCGACAATATACCCTAAGGCCATTTGGGTAATTTCCTTAAAACTGAG
TCCTTAGGTTATCACCAAGCCGCTTG
Found at i:4337199 original size:156 final size:153
Alignment explanation
Indices: 4336706--4337226 Score: 470
Period size: 156 Copynumber: 3.4 Consensus size: 153
4336696 AGGATTATCG
* * * * *
4336706 AGATACTTTCACATCGAAGGTATATCTAAGGGCATTTTGGTAATTT-TATTAGAA-TCAAGTCC-
1 AGATACTTTCACGTCGAATGTACATCTAAGGGCATTTTGGTAATTTCT-TTAAAACT-GAGTCCT
* * ** *
4336768 AGGTCATCACCGAGTTAG--TTTATGCCAAAGGTGTGCATTTAGGATAGGTTTATCCTTTTCCTT
64 AGGTTATCACCAAG-CCGCTTTTATGCCAAAGGTGTGCATTTAGGATAGGTTCATCCTTTT--TT
* **
4336831 ATCTTTTTTCATGTCCTTTAAGGTTACCA
126 ATCTTTTTT-GTGTCCTTTAAGGTTAAAA
* * * * *
4336860 AGATACTTTCACGTCGACAATATACCT-TAAGGGTATTTGGGTAATTTTCCTT-AAACTGAGTCC
1 AGATACTTTCACGTCG--AATGTACATCTAAGGGCATTTTGGTAA-TTTCTTTAAAACTGAGTCC
** * *
4336923 TAGGTTATCACCGGGCCGCTTGTATGCTAAAGGTGTGCATTTAGGATAGGTTCA-CCTTTTTTAT
63 TAGGTTATCACCAAGCCGCTTTTATGCCAAAGGTGTGCATTTAGGATAGGTTCATCCTTTTTTAT
*
4336987 CTTTTTTGTGTCCTTTAGGGTTAAAA
128 CTTTTTTGTGTCCTTTAAGGTTAAAA
* * * * * * *
4337013 AGTTATTTTCACGTCAAAGGTATACCCTAAGGCCATTTTGGTAATTTCTTTAAAACTGAGTCCAT
1 AGATACTTTCACGTCGAATGTACA-TCTAAGGGCATTTTGGTAATTTCTTTAAAACTGAGTCC--
* * * * * *
4337078 TTTGGTTATCATCAAGTCGCTTTTATGCCAAAGGTATCCATTTAGGATAGATTCATCCTTTTATT
63 -TAGGTTATCACCAAGCCGCTTTTATGCCAAAGGTGTGCATTTAGGATAGGTTCATCCTTTT-TT
* **
4337143 ATC-TTTTTGTGTCTTTTAAGGTTATTA
126 ATCTTTTTTGTGTCCTTTAAGGTTAAAA
* *
4337170 AGATACTTTCACATCGAATGTACATCTAAGGGCATTTTAGTAATTT-TTTAAAA-TGAG
1 AGATACTTTCACGTCGAATGTACATCTAAGGGCATTTTGGTAATTTCTTTAAAACTGAG
4337227 ATGTAATCAC
Statistics
Matches: 295, Mismatches: 56, Indels: 32
0.77 0.15 0.08
Matches are distributed among these distances:
151 4 0.01
152 6 0.02
153 53 0.18
154 30 0.10
155 30 0.10
156 92 0.31
157 75 0.25
158 5 0.02
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (153 bp):
AGATACTTTCACGTCGAATGTACATCTAAGGGCATTTTGGTAATTTCTTTAAAACTGAGTCCTAG
GTTATCACCAAGCCGCTTTTATGCCAAAGGTGTGCATTTAGGATAGGTTCATCCTTTTTTATCTT
TTTTGTGTCCTTTAAGGTTAAAA
Found at i:4339356 original size:36 final size:35
Alignment explanation
Indices: 4339236--4339361 Score: 123
Period size: 35 Copynumber: 3.5 Consensus size: 35
4339226 CATTTGTTCA
*
4339236 TGACATACA-TTTTTTGAAAGCCTTTATCTTTAGAT
1 TGACAT-CATTTTTTTGAAAGCCTTTATCTTTGGAT
*** *
4339271 TGACATCATTTTTTTGAAAAAATATATAT-TTTGAAT
1 TGACATCATTTTTTTGAAAGCCT-T-TATCTTTGGAT
* *
4339307 ATTA-ATACATTTTTTTGAAAGCCTTTGTCTTTGGAT
1 -TGACAT-CATTTTTTTGAAAGCCTTTATCTTTGGAT
4339343 TGACATCATTTTTTTGAAA
1 TGACATCATTTTTTTGAAA
4339362 TATGAATATT
Statistics
Matches: 72, Mismatches: 12, Indels: 14
0.73 0.12 0.14
Matches are distributed among these distances:
34 2 0.03
35 34 0.47
36 17 0.24
37 19 0.26
ACGTcount: A:0.31, C:0.10, G:0.11, T:0.48
Consensus pattern (35 bp):
TGACATCATTTTTTTGAAAGCCTTTATCTTTGGAT
Found at i:4339385 original size:72 final size:71
Alignment explanation
Indices: 4339240--4339377 Score: 217
Period size: 72 Copynumber: 1.9 Consensus size: 71
4339230 TGTTCATGAC
4339240 ATACATTTTTTGAAAGCCTTTATCTTTAGATTGACATCATTTTTTTGAAAAAATATATATTTTGA
1 ATACATTTTTTGAAAGCCTTTATCTTTAGATTGACATCATTTTTTTGAAAAAATATATATTTTGA
4339305 ATATTA
66 ATATTA
* * *
4339311 ATACATTTTTTTGAAAGCCTTTGTCTTTGGATTGACATCATTTTTTTG-AAATATGA-ATATTTT
1 ATACA-TTTTTTGAAAGCCTTTATCTTTAGATTGACATCATTTTTTTGAAAAAAT-ATATATTTT
4339374 GAAT
64 GAAT
4339378 TTTTAATATT
Statistics
Matches: 62, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
71 21 0.34
72 41 0.66
ACGTcount: A:0.32, C:0.09, G:0.11, T:0.49
Consensus pattern (71 bp):
ATACATTTTTTGAAAGCCTTTATCTTTAGATTGACATCATTTTTTTGAAAAAATATATATTTTGA
ATATTA
Found at i:4340420 original size:26 final size:27
Alignment explanation
Indices: 4340372--4340423 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
4340362 TCAATAATAA
*
4340372 AAAAGACAAAAAAAACAGCAAATGAAG
1 AAAAGACAAAAAAAACAGAAAATGAAG
* *
4340399 AAAA-ACAGAAAAAACATAAAATGAA
1 AAAAGACAAAAAAAACAGAAAATGAA
4340424 AAGAAAAGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.73, C:0.10, G:0.12, T:0.06
Consensus pattern (27 bp):
AAAAGACAAAAAAAACAGAAAATGAAG
Found at i:4341210 original size:109 final size:112
Alignment explanation
Indices: 4340977--4341243 Score: 314
Period size: 109 Copynumber: 2.4 Consensus size: 112
4340967 AGAGACATGA
* **
4340977 AAGAACTTCAAATTTGTCTAATTTTCAAAGAAATTCATGTTTTATATGACCTGATCCACTCATGC
1 AAGAACATCAAATTTGTCTAATTTTCAAAGAAATTCATGTTTTATATGACCAAATCCACTCATGC
* *
4341042 CTATGAGAATGAGGCTTGTATCCAATCGATTTTGAAAATTTTAAGCC
66 CTATGAAAATGAGGCTTATATCCAATCGATTTTGAAAATTTTAAGCC
* *
4341089 AA-CACTATCAAATTTGTCT-ATTTTCAAAGAAATTCATGTTTTATATGACCAAATCCA-T-TTG
1 AAGAAC-ATCAAATTTGTCTAATTTTCAAAGAAATTCATGTTTTATATGACCAAATCCACTCATG
* * *
4341150 CCT-TAGAAAAT-AGGGTTTATATCCTATC-AGTTTTGAAATTTTTAAGCC
65 CCTAT-GAAAATGA-GGCTTATATCCAATCGA-TTTTGAAAATTTTAAGCC
* * * * *
4341198 AAGAACATCAAATTTGTTTGATTTTCAAATAAACTCATATTTTATA
1 AAGAACATCAAATTTGTCTAATTTTCAAAGAAATTCATGTTTTATA
4341244 CAATATAATC
Statistics
Matches: 134, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
108 3 0.02
109 53 0.40
110 26 0.19
111 38 0.28
112 14 0.10
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (112 bp):
AAGAACATCAAATTTGTCTAATTTTCAAAGAAATTCATGTTTTATATGACCAAATCCACTCATGC
CTATGAAAATGAGGCTTATATCCAATCGATTTTGAAAATTTTAAGCC
Found at i:4342009 original size:68 final size:69
Alignment explanation
Indices: 4341883--4342029 Score: 183
Period size: 68 Copynumber: 2.1 Consensus size: 69
4341873 CATTTCATGT
* * *
4341883 GCATTTGCATTTTTATTGATGCTTTGTAGCTGCATCTTTTCATGCATATCGGTACTTTAGATGAT
1 GCATTTGCATTTTTATTGATGCTTTGCAGCTGCATCTTTTCACGCATATCGATACTTTAGATGAT
4341948 ACTG
66 ACTG
* *
4341952 GCATTTGCCA-TTTTATTGATGC-TTGCAGCTGCAT-TTTCTTACGCATATCTATACTTTAGATG
1 GCATTTG-CATTTTTATTGATGCTTTGCAGCTGCATCTTT-TCACGCATATCGATACTTTAGATG
* *
4342014 ACATTG
64 ATACTG
*
4342020 GTATTTGCAT
1 GCATTTGCAT
4342030 CATTTCATAT
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
67 5 0.07
68 41 0.61
69 19 0.28
70 2 0.03
ACGTcount: A:0.21, C:0.17, G:0.18, T:0.44
Consensus pattern (69 bp):
GCATTTGCATTTTTATTGATGCTTTGCAGCTGCATCTTTTCACGCATATCGATACTTTAGATGAT
ACTG
Found at i:4342076 original size:44 final size:44
Alignment explanation
Indices: 4342022--4342168 Score: 129
Period size: 44 Copynumber: 3.3 Consensus size: 44
4342012 TGACATTGGT
*
4342022 ATTTGCATCATTTCATATGCATTTGCCACTTTATTGAAGCTTGC
1 ATTTACATCATTTCATATGCATTTGCCACTTTATTGAAGCTTGC
** * * ** * * *
4342066 ATTTACATCATTTCACGTACATCT-ATATTTTAAATG-A-CATTGGT
1 ATTTACATCATTTCATATGCATTTGCCACTTT-ATTGAAGC-TT-GC
*
4342110 ATTTACATCATTTCATATGCATTTGCCACTTTATTGATGCTTGC
1 ATTTACATCATTTCATATGCATTTGCCACTTTATTGAAGCTTGC
* *
4342154 ATTCATATCATTTCA
1 ATTTACATCATTTCA
4342169 CGTATATTTG
Statistics
Matches: 75, Mismatches: 22, Indels: 12
0.69 0.20 0.11
Matches are distributed among these distances:
42 1 0.01
43 7 0.09
44 60 0.80
45 6 0.08
46 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.10, T:0.44
Consensus pattern (44 bp):
ATTTACATCATTTCATATGCATTTGCCACTTTATTGAAGCTTGC
Found at i:4342155 original size:88 final size:88
Alignment explanation
Indices: 4341952--4342172 Score: 302
Period size: 88 Copynumber: 2.5 Consensus size: 88
4341942 GATGATACTG
* ** * * * *
4341952 GCATTTGCCATTTTATTGATGCTTGCAGCTGCAT--TTTCTTACGCATATCTATACTTTAGATGA
1 GCATTTGCCACTTTATTGATGCTTGCATTTACATCATTTC--ACGTACATCTATACTTTAAATGA
*
4342015 CATTGGTATTTGCATCATTTCATAT
64 CATTGGTATTTACATCATTTCATAT
* *
4342040 GCATTTGCCACTTTATTGAAGCTTGCATTTACATCATTTCACGTACATCTATATTTTAAATGACA
1 GCATTTGCCACTTTATTGATGCTTGCATTTACATCATTTCACGTACATCTATACTTTAAATGACA
4342105 TTGGTATTTACATCATTTCATAT
66 TTGGTATTTACATCATTTCATAT
* *
4342128 GCATTTGCCACTTTATTGATGCTTGCATTCATATCATTTCACGTA
1 GCATTTGCCACTTTATTGATGCTTGCATTTACATCATTTCACGTA
4342173 TATTTGCATC
Statistics
Matches: 118, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
88 114 0.97
90 4 0.03
ACGTcount: A:0.25, C:0.19, G:0.13, T:0.43
Consensus pattern (88 bp):
GCATTTGCCACTTTATTGATGCTTGCATTTACATCATTTCACGTACATCTATACTTTAAATGACA
TTGGTATTTACATCATTTCATAT
Found at i:4342786 original size:60 final size:58
Alignment explanation
Indices: 4342693--4342879 Score: 196
Period size: 60 Copynumber: 3.1 Consensus size: 58
4342683 GAATCTACAA
* *
4342693 TCCTTGAGTCTTAGGTTTACCCAAGTCATTGTTTAGGTTTCTGGTCTTATCCAGGCTATT
1 TCCTTGAGTCTT-GGTTTGCCCAAGTCATTGTTTAGGTTTCTGGTCTTATCCAAGC-ATT
* * * *
4342753 TCCTTGAGTCTTGGTTTTGCCCGAGTTATTGTTTAGGTTTTTGGTCTTGTCCAAGCATT
1 TCCTTGAGTCTTGG-TTTGCCCAAGTCATTGTTTAGGTTTCTGGTCTTATCCAAGCATT
* * * * *
4342812 TCTTTTAAGTTTTGGCTTTGCCTAAGTCATTGTTTAGAG-TTCTGGTCATATCCAAGTCATT
1 TC-CTTGAGTCTTGG-TTTGCCCAAGTCATTGTTTAG-GTTTCTGGTCTTATCCAAG-CATT
*
4342873 TCATTGA
1 TCCTTGA
4342880 ATCGCGGTTT
Statistics
Matches: 105, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
59 7 0.07
60 91 0.87
61 7 0.07
ACGTcount: A:0.17, C:0.18, G:0.20, T:0.45
Consensus pattern (58 bp):
TCCTTGAGTCTTGGTTTGCCCAAGTCATTGTTTAGGTTTCTGGTCTTATCCAAGCATT
Found at i:4343117 original size:61 final size:61
Alignment explanation
Indices: 4343010--4343131 Score: 156
Period size: 61 Copynumber: 2.0 Consensus size: 61
4343000 GTCTTGTTTT
* * * * *
4343010 GCCTAACTCATTATTTAGGTTTATAGTTTCATTCTAGCCTTGTTATTGAGTTTTGGTTATG
1 GCCTAACTCATTATTTAGGTTTATAGCTTCATCCAAGCCTTCTTATTGAGTCTTGGTTATG
* * *
4343071 GCCTAAGTCATTATTTAGGTTTTTGGCTTCATCCAAG-CTATCTTATTGAGTCTTGGTTATG
1 GCCTAACTCATTATTTAGGTTTATAGCTTCATCCAAGCCT-TCTTATTGAGTCTTGGTTATG
4343132 CACATGTTAT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
60 2 0.04
61 50 0.96
ACGTcount: A:0.20, C:0.15, G:0.19, T:0.47
Consensus pattern (61 bp):
GCCTAACTCATTATTTAGGTTTATAGCTTCATCCAAGCCTTCTTATTGAGTCTTGGTTATG
Found at i:4343437 original size:76 final size:76
Alignment explanation
Indices: 4343354--4343515 Score: 213
Period size: 76 Copynumber: 2.1 Consensus size: 76
4343344 AAGTTGTTAC
*
4343354 TAGTTTGTT-CGATTGTTGATAAAAATTTTTAAAAACCACATATTCCTCATCATGTT-ATTTTCT
1 TAGTTTGTTCCGATTGTTGATAAAAA-TTTTAAAAACAACATATTCCTCATCATGTTCATTTTCT
4343417 TTCA-GCCTATTAT
65 TT-AGGCC-ATTAT
* * * *
4343430 TAGTTTGTTCCGGTTGTTGATAAAAATTTTAGAAACAACATATTCCTTATCATGTTCCTTTTTCT
1 TAGTTTGTTCCGATTGTTGATAAAAATTTTAAAAACAACATATTCCTCATCATGTT-CATTTTCT
4343495 TTAGGCCATTAT
65 TTAGGCCATTAT
*
4343507 CAGTTTGTT
1 TAGTTTGTT
4343516 TTGACTGTTG
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
76 36 0.47
77 29 0.38
78 11 0.14
ACGTcount: A:0.27, C:0.15, G:0.12, T:0.46
Consensus pattern (76 bp):
TAGTTTGTTCCGATTGTTGATAAAAATTTTAAAAACAACATATTCCTCATCATGTTCATTTTCTT
TAGGCCATTAT
Found at i:4343525 original size:77 final size:76
Alignment explanation
Indices: 4343355--4343549 Score: 216
Period size: 77 Copynumber: 2.6 Consensus size: 76
4343345 AGTTGTTACT
* *
4343355 AGTTTGTT-CGATTGTTGATAAAAATTTTTAAAAACCACATATTCCTCATCATGTTATTTTCTTT
1 AGTTTGTTCCGACTGTTGATAAAAA-TTTTAGAAACCACATATTCCTCATCATGTTATTTTCTTT
*
4343419 CAGCCTATTATT
65 CAGCCTATTATC
** * * *
4343431 AGTTTGTTCCGGTTGTTGATAAAAATTTTAGAAACAACATATTCCTTATCATGTTCCTTTTTCTT
1 AGTTTGTTCCGACTGTTGATAAAAATTTTAGAAACCACATATTCCTCATCATGTT--ATTTTCTT
4343496 T-AGGCC-ATTATC
64 TCA-GCCTATTATC
** ** *
4343508 AGTTTGTTTTGACTGTTGATGGATATTTTAGAAACCACATAT
1 AGTTTGTTCCGACTGTTGATAAAAATTTTAGAAACCACATAT
4343550 CCCCCATTAT
Statistics
Matches: 101, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
76 35 0.35
77 55 0.54
78 11 0.11
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.45
Consensus pattern (76 bp):
AGTTTGTTCCGACTGTTGATAAAAATTTTAGAAACCACATATTCCTCATCATGTTATTTTCTTTC
AGCCTATTATC
Found at i:4344333 original size:121 final size:120
Alignment explanation
Indices: 4344119--4344545 Score: 336
Period size: 121 Copynumber: 3.6 Consensus size: 120
4344109 TGTTGACTCA
* * * * * ** *
4344119 TCAGTTTTGTCACAATCAACCTTTCTCAA-TTGTTGACTTGTTGATTTTGTCCCAGTCAACCTTT
1 TCAGTTTTATCCCAATCAACCTTT-ACAATTTATTGACTTATCAATTTTATCCCAGTCAACCTTT
* * *
4344183 ACTGTTAGTTGACTTATCGATTTTATCCCAATCAACCTTTACTC-A-TAGTTGACTTG
65 ACTATCAGTTGACTCATCGATTTTATCCCAATCAACCTTT-CTCAATTA-TTGACTTG
* * * *
4344239 T-TGATTTTATCCCAATCAACCTTTACTATTTATTGATTTATCAAATTTTATCCCAGTTAACCTT
1 TCAG-TTTTATCCCAATCAACCTTTACAATTTATTGACTTATC-AATTTTATCCCAGTCAACCTT
* * * *
4344303 TACTATCCA-TTGACTCGTCGGTTTTGTCCCAATCAACCTTTTTCAATTATTGACTTG
64 TACTAT-CAGTTGACTCATCGATTTTATCCCAATCAACCTTTCTCAATTATTGACTTG
* *
4344360 TCAGTTTTATCCCAGTCAACCTTTACAATTTATTGACTTATCAATTTTATCTC-GATCAA-CTTT
1 TCAGTTTTATCCCAATCAACCTTTACAATTTATTGACTTATCAATTTTATCCCAG-TCAACCTTT
* ** ** * * * * *
4344423 ACAATTTGTTGACTTGTC-AGTTTTATCTCGATCAACCTTTGCT-ATTTGTTGACTTA
65 ACTATCAGTTGACTCATCGA-TTTTATCCCAATCAACCTTT-CTCAATTATTGACTTG
* * * * * * *
4344479 TCAATTTTGTCCCGATCAACCTTTAC--TCTTAGTTAACTTGTCGATTTTATCCTAGTCAACCTT
1 TCAGTTTTATCCCAATCAACCTTTACAAT-TTA-TTGACTTATCAATTTTATCCCAGTCAACCTT
4344542 TACT
64 TACT
4344546 CTTAGTTAAC
Statistics
Matches: 245, Mismatches: 47, Indels: 30
0.76 0.15 0.09
Matches are distributed among these distances:
117 1 0.00
118 3 0.01
119 90 0.37
120 51 0.21
121 96 0.39
122 4 0.02
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.44
Consensus pattern (120 bp):
TCAGTTTTATCCCAATCAACCTTTACAATTTATTGACTTATCAATTTTATCCCAGTCAACCTTTA
CTATCAGTTGACTCATCGATTTTATCCCAATCAACCTTTCTCAATTATTGACTTG
Found at i:4344558 original size:80 final size:79
Alignment explanation
Indices: 4344083--4344583 Score: 340
Period size: 80 Copynumber: 6.3 Consensus size: 79
4344073 ACTTGTTTGT
* * * * ** * * *
4344083 TTTTATCCTGATCAACCATTACTATTTGTTGACTCATCAGTTTTGTCACAATCAACCTTT-CTCA
1 TTTTATCCCGATCAACCTTTACTCTTAGTTGACTTGTCA-TTTTATCCCAGTCAACCTTTACT--
* **
4344147 ATT-GTTGACTTGTTGA
63 ATTAGTTGACTTATCAA
* * * *
4344163 TTTTGTCCC-AGTCAACCTTTACTGTTAGTTGACTTATCGATTTTATCCCAATCAACCTTTACTC
1 TTTTATCCCGA-TCAACCTTTACTCTTAGTTGACTTGTC-ATTTTATCCCAGTCAACCTTTACT-
* **
4344227 A-TAGTTGACTTGTTGA
63 ATTAGTTGACTTATCAA
* * * * *
4344243 TTTTATCCCAATCAACCTTTACTATTTA-TTGATTTATCAAATTTTATCCCAGTTAACCTTTACT
1 TTTTATCCCGATCAACCTTTACT-CTTAGTTGACTTGTC--ATTTTATCCCAGTCAACCTTTACT
* ** **
4344307 ATCCA-TTGACTCGTCGG
63 AT-TAGTTGACTTATCAA
* * * *
4344324 TTTTGTCCCAATCAACCTTT-TTCAATTA-TTGACTTGTCAGTTTTATCCCAGTCAACCTTTACA
1 TTTTATCCCGATCAACCTTTACTC--TTAGTTGACTTGTCA-TTTTATCCCAGTCAACCTTTACT
4344387 ATTTA-TTGACTTATCAA
63 A-TTAGTTGACTTATCAA
* ** * * *
4344404 TTTTATCTCGATCAA-CTTTACAATTTGTTGACTTGTCAGTTTTATCTC-GATCAACCTTTGCTA
1 TTTTATCCCGATCAACCTTTACTCTTAGTTGACTTGTCA-TTTTATCCCAG-TCAACCTTTACTA
*
4344467 TTTGTTGACTTATCAA
64 TTAGTTGACTTATCAA
* * * *
4344483 TTTTGTCCCGATCAACCTTTACTCTTAGTTAACTTGTCGATTTTATCCTAGTCAACCTTTACTCT
1 TTTTATCCCGATCAACCTTTACTCTTAGTTGACTTGTC-ATTTTATCCCAGTCAACCTTTACTAT
* *
4344548 TAGTTAACTTAACAA
65 TAGTTGACTTATCAA
* *
4344563 TTTTATCTCGATCAACTTTTA
1 TTTTATCCCGATCAACCTTTA
4344584 TTATTTGTTG
Statistics
Matches: 343, Mismatches: 58, Indels: 40
0.78 0.13 0.09
Matches are distributed among these distances:
78 5 0.01
79 63 0.18
80 203 0.59
81 71 0.21
82 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.44
Consensus pattern (79 bp):
TTTTATCCCGATCAACCTTTACTCTTAGTTGACTTGTCATTTTATCCCAGTCAACCTTTACTATT
AGTTGACTTATCAA
Found at i:4344566 original size:40 final size:41
Alignment explanation
Indices: 4344083--4344593 Score: 305
Period size: 40 Copynumber: 12.8 Consensus size: 41
4344073 ACTTGTTTGT
* * * *
4344083 TTTTATCCT-GATCAACCATTACTATTTGTTGACTCATCAG
1 TTTTATCCTCGATCAACCTTTACTATTAGTTGACTTATCAA
* * * * **
4344123 TTTTGT-CACAATCAACCTTT-CTCAATT-GTTGACTTGTTGA
1 TTTTATCCTCGATCAACCTTTACT--ATTAGTTGACTTATCAA
* * *
4344163 TTTTGTCC-C-AGTCAACCTTTACTGTTAGTTGACTTATCGA
1 TTTTATCCTCGA-TCAACCTTTACTATTAGTTGACTTATCAA
* * **
4344203 TTTTATCC-CAATCAACCTTTACTCA-TAGTTGACTTGTTGA
1 TTTTATCCTCGATCAACCTTTACT-ATTAGTTGACTTATCAA
* *
4344243 TTTTATCC-CAATCAACCTTTACTATTTA-TTGATTTATCAAA
1 TTTTATCCTCGATCAACCTTTACTA-TTAGTTGACTTATC-AA
* * ** **
4344284 TTTTATCC-C-AGTTAACCTTTACTATCCA-TTGACTCGTCGG
1 TTTTATCCTCGA-TCAACCTTTACTAT-TAGTTGACTTATCAA
* * * * * *
4344324 TTTTGTCC-CAATCAACCTTTTTCAATTA-TTGACTTGTCAG
1 TTTTATCCTCGATCAACC-TTTACTATTAGTTGACTTATCAA
*
4344364 TTTTATCC-C-AGTCAACCTTTACAATTTA-TTGACTTATCAA
1 TTTTATCCTCGA-TCAACCTTTACTA-TTAGTTGACTTATCAA
* * * *
4344404 TTTTAT-CTCGATCAA-CTTTACAATTTGTTGACTTGTCAG
1 TTTTATCCTCGATCAACCTTTACTATTAGTTGACTTATCAA
* *
4344443 TTTTAT-CTCGATCAACCTTTGCTATTTGTTGACTTATCAA
1 TTTTATCCTCGATCAACCTTTACTATTAGTTGACTTATCAA
* * * * *
4344483 TTTTGTCC-CGATCAACCTTTACTCTTAGTTAACTTGTCGA
1 TTTTATCCTCGATCAACCTTTACTATTAGTTGACTTATCAA
* * * *
4344523 TTTTATCCTAG-TCAACCTTTACTCTTAGTTAACTTAACAA
1 TTTTATCCTCGATCAACCTTTACTATTAGTTGACTTATCAA
* * *
4344563 TTTTAT-CTCGATCAACTTTTATTATTTGTTG
1 TTTTATCCTCGATCAACCTTTACTATTAGTTG
4344594 GCTTGTCTGT
Statistics
Matches: 383, Mismatches: 63, Indels: 50
0.77 0.13 0.10
Matches are distributed among these distances:
38 2 0.01
39 51 0.13
40 281 0.73
41 49 0.13
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.45
Consensus pattern (41 bp):
TTTTATCCTCGATCAACCTTTACTATTAGTTGACTTATCAA
Found at i:4344617 original size:80 final size:77
Alignment explanation
Indices: 4344352--4344625 Score: 253
Period size: 80 Copynumber: 3.4 Consensus size: 77
4344342 TTTTCAATTA
***
4344352 TTGACTTGTCAGTTTTATCCCAGTCAACCTTTACAATTTA-TTGACTTATCAATTTTATCTCGAT
1 TTGACTTGTC-GTTTTATCTTGGTCAACCTTTAC--TTTAGTTGACTTATCAATTTTATCTCGAT
*
4344416 CAACTTTACAATTTG
63 CAACTTTACTATTTG
* * * * * *
4344431 TTGACTTGTCAGTTTTATCTCGATCAACCTTTGCTATTTGTTGACTTATCAATTTTGTCCCGATC
1 TTGACTTGTC-GTTTTATCTTGGTCAACCTTTACT-TTAGTTGACTTATCAATTTTATCTCGATC
* *
4344496 AACCTTTACTCTTAG
64 AA-CTTTACTATTTG
* * * * *
4344511 TTAACTTGTCGATTTTATCCTAGTCAACCTTTACTCTTAGTTAACTTAACAATTTTATCTCGATC
1 TTGACTTGTCG-TTTTATCTTGGTCAACCTTTACT-TTAGTTGACTTATCAATTTTATCTCGATC
*
4344576 AACTTTTATTATTTG
64 AAC-TTTACTATTTG
* * * *
4344591 TTGGCTTGTCTGTTTCATTTTGGTCAACGTTTACT
1 TTGACTTGTC-GTTTTATCTTGGTCAACCTTTACT
4344626 ATTTATTGGC
Statistics
Matches: 157, Mismatches: 32, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
77 1 0.01
78 2 0.01
79 57 0.36
80 96 0.61
81 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.46
Consensus pattern (77 bp):
TTGACTTGTCGTTTTATCTTGGTCAACCTTTACTTTAGTTGACTTATCAATTTTATCTCGATCAA
CTTTACTATTTG
Found at i:4344646 original size:40 final size:39
Alignment explanation
Indices: 4344567--4344689 Score: 120
Period size: 40 Copynumber: 3.1 Consensus size: 39
4344557 TAACAATTTT
* * * * *
4344567 ATCTCGATCAACTTTTATTATTTGTTGGCTTGTCTGTTTC
1 ATCTCGGTCAACCTTTACTATTTATTGGCTTAT-TGTTTC
* * *
4344607 ATTTTGGTCAACGTTTACTATTTATTGGCTTATTAGTTTC
1 ATCTCGGTCAACCTTTACTATTTATTGGCTTATT-GTTTC
* * *
4344647 GTCTCGGTCAACCTTTACTTTTTAATGGCTTATTGATTTC
1 ATCTCGGTCAACCTTTACTATTTATTGGCTTATTG-TTTC
4344687 ATC
1 ATC
4344690 CCACTCAACT
Statistics
Matches: 67, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
39 2 0.03
40 65 0.97
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (39 bp):
ATCTCGGTCAACCTTTACTATTTATTGGCTTATTGTTTC
Found at i:4344698 original size:40 final size:40
Alignment explanation
Indices: 4344614--4344698 Score: 91
Period size: 40 Copynumber: 2.1 Consensus size: 40
4344604 TTCATTTTGG
* * * * **
4344614 TCAACGTTTACTATTTATTGGCTTATTAGTTTCGTCTCGG
1 TCAACCTTTACTATTTAATGGCTTATTAGTTTCATCCCAC
*
4344654 TCAACCTTTACTTTTTAATGGCTTATT-GATTTCATCCCAC
1 TCAACCTTTACTATTTAATGGCTTATTAG-TTTCATCCCAC
4344694 TCAAC
1 TCAAC
4344699 TTTTTCATCT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.03
40 36 0.97
ACGTcount: A:0.21, C:0.22, G:0.12, T:0.45
Consensus pattern (40 bp):
TCAACCTTTACTATTTAATGGCTTATTAGTTTCATCCCAC
Found at i:4344847 original size:67 final size:66
Alignment explanation
Indices: 4344761--4344964 Score: 212
Period size: 67 Copynumber: 3.1 Consensus size: 66
4344751 TTGACTTACT
* * * *
4344761 GGTTTCACCCTAGTTAACACCTTTTTCGACTTGGGTTCCATCTTGGTCTCTTTTAGTTGACTTTA
1 GGTTACACCCTAGTCAACACCTTTTTCAACTTAGGTT-CATCTTGGTCTCTTTTAGTTGACTTTA
4344826 TC
65 TC
* * * * *
4344828 GGTTACGCCCTAGTCAACACCTTTTTCAACTTAGGTTTATCCTAGTCTCTTTTAGCTGACTTTAT
1 GGTTACACCCTAGTCAACACCTTTTTCAACTTAGGTTCATCTTGGTCTCTTTTAGTTGACTTTAT
4344893 C
66 C
** ** * * * *
4344894 AATTTTACCCTAGTCAACACCCTTTTT-AACTTAGGTTTCACCTTGATCTCTTTTACTTAACTTT
1 GGTTACACCCTAGTCAACA-CCTTTTTCAACTTAGG-TTCATCTTGGTCTCTTTTAGTTGACTTT
*
4344958 ATT
64 ATC
4344961 GGTT
1 GGTT
4344965 TCGCATTCGT
Statistics
Matches: 110, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
66 47 0.43
67 63 0.57
ACGTcount: A:0.19, C:0.24, G:0.13, T:0.44
Consensus pattern (66 bp):
GGTTACACCCTAGTCAACACCTTTTTCAACTTAGGTTCATCTTGGTCTCTTTTAGTTGACTTTAT
C
Found at i:4347207 original size:155 final size:156
Alignment explanation
Indices: 4346864--4347207 Score: 349
Period size: 156 Copynumber: 2.2 Consensus size: 156
4346854 GCTATTTTGC
* * * ** * ** * *
4346864 AATTTTAGAAAGTTTACGGACTAAATTGCAAAAAGTTTGAAATTTTTTTCTTTGAGTGTCTTTGC
1 AATTTTAGATACTTTAAGGACTAAATTATAAATAGTTCAAAACTTTTTTCTTTGAGTGTCCTTGC
* * * *
4346929 TTGGTCGAAAGTCCTTAGTGCCATAGAAGGACTGTGTCATGCATTTCTAAACATATTCTAGGTTT
66 TTGGTCCAAAGTCCTTAATGCCATAGAAGGACTGTCTCATGCATTTCTAAACATATTCTAGGTCT
* *
4346994 TTTTAACATGTCAAAGACTTTTTGCA
131 TTTAAACATGTCAAAGACTTTTTACA
* * * * *
4347020 AATTTTAGATAGTTTAGGGGCTAAATTGTAAATAGTTCAAAACTTTTTTCTTTGCGTGTCCTTGC
1 AATTTTAGATACTTTAAGGACTAAATTATAAATAGTTCAAAACTTTTTTCTTTGAGTGTCCTTGC
* * *
4347085 TTGG-CCAAGAGTTCC-TAATGCCATA-AGGGACTGTCTCATGCATTTCTAAACATATTTTATG-
66 TTGGTCCAA-AG-TCCTTAATGCCATAGAAGGACTGTCTCATGCATTTCTAAACATATTCTAGGT
** *
4347146 CTTTTAAACATGAT-AGGGACTTTTTTATA
129 CTTTTAAACATG-TCAAAGAC-TTTTTACA
*
4347175 AATTTTA-ATGACTTTAAGGACTAATTTATAAAT
1 AATTTTAGAT-ACTTTAAGGACTAAATTATAAAT
4347208 TTTGAAAAAT
Statistics
Matches: 156, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
154 16 0.10
155 67 0.43
156 70 0.45
157 3 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (156 bp):
AATTTTAGATACTTTAAGGACTAAATTATAAATAGTTCAAAACTTTTTTCTTTGAGTGTCCTTGC
TTGGTCCAAAGTCCTTAATGCCATAGAAGGACTGTCTCATGCATTTCTAAACATATTCTAGGTCT
TTTAAACATGTCAAAGACTTTTTACA
Found at i:4348587 original size:155 final size:155
Alignment explanation
Indices: 4348355--4348637 Score: 352
Period size: 155 Copynumber: 1.8 Consensus size: 155
4348345 TCATCACCGA
* * * * *
4348355 GTCAATTTTATGCCAAAGGTGTGTATTTATGATAGGTTTGTCCTTTTCCTTATCTTTTTAGTGTT
1 GTCAATTTTATGCCAAAAGTGTGCATTTACGATAGATTTGTCCTTTTCCTTATCTTTTTAGTGTC
* * * * **
4348420 ATTTAAGATTACCAGGACACTTTAACGTCGAAAGTATACCCTATAGGCATTTTGGTAATTTTTTT
66 ATTCAAGATTACCAAGACACTTTAACGTCGAAAGTATACCCCATAAGCATTTCAGTAATTTTTTT
4348485 AGAACTAAATCGTAAGCATCACTAG
131 AGAACTAAATCGTAAGCATCACTAG
* * * *
4348510 GTCACTTTTATGCCAAAAGTGTGCATTTACGATAGATTTGTCTTTTTTCTTATCTTTTTTGTGTC
1 GTCAATTTTATGCCAAAAGTGTGCATTTACGATAGATTTGTCCTTTTCCTTATCTTTTTAGTGT-
* * * * * * *
4348575 CA-TCAGGGTTACCAAGATACTTTCATGTCTAAGGTATACCCCATAAGCATTTCAGTAATTTTT
65 CATTCAAGATTACCAAGACACTTTAACGTCGAAAGTATACCCCATAAGCATTTCAGTAATTTTT
4348638 CTGCAATTGA
Statistics
Matches: 105, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
155 104 0.99
156 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (155 bp):
GTCAATTTTATGCCAAAAGTGTGCATTTACGATAGATTTGTCCTTTTCCTTATCTTTTTAGTGTC
ATTCAAGATTACCAAGACACTTTAACGTCGAAAGTATACCCCATAAGCATTTCAGTAATTTTTTT
AGAACTAAATCGTAAGCATCACTAG
Found at i:4353209 original size:21 final size:22
Alignment explanation
Indices: 4353184--4353234 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
4353174 GTAGTCAGTC
4353184 AAATTACAAAAT-TTAA-AATAA
1 AAATTACAAAATATTAATAA-AA
* *
4353205 AAATTACATACTATTAATAAAA
1 AAATTACAAAATATTAATAAAA
4353227 AAATTACA
1 AAATTACA
4353235 GTTAATATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 10 0.38
22 14 0.54
23 2 0.08
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (22 bp):
AAATTACAAAATATTAATAAAA
Done.