genome.fa.s661.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold661
Parameters: 2 7 7 80 10 50 1000
Length:  139266

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2780--2980	52	3.9	52	93	1	323	30	17	18	33	1.94
2969--2993	13	1.9	13	100	0	50	36	16	16	32	1.90
3034--3100	33	2.0	33	88	0	98	40	14	11	32	1.83
3056--3080	13	1.9	13	100	0	50	32	16	16	36	1.90
3416--3593	29	6.1	29	84	5	225	26	17	29	26	1.97
3425--3595	86	2.0	86	90	2	272	23	18	30	27	1.97
5029--5090	1	62.0	1	77	0	61	1	4	4	88	0.67
5017--5049	15	2.1	16	88	5	50	0	0	15	84	0.61
5017--5088	16	4.5	16	81	14	69	1	4	8	86	0.76
5031--5090	10	5.9	10	83	11	68	1	5	5	88	0.69
5016--5090	22	3.4	22	81	7	82	1	5	8	85	0.80
5029--5090	18	3.4	18	84	2	79	1	4	4	88	0.67
7174--7247	20	3.7	20	78	8	69	29	16	13	40	1.86
18044--18452	206	2.0	206	97	0	773	29	17	25	27	1.97
20319--20460	52	2.7	51	91	4	221	30	17	17	33	1.94
20449--20473	13	1.9	13	100	0	50	36	16	16	32	1.90
20517--20580	19	3.7	18	74	23	66	39	17	14	29	1.88
20514--20578	32	2.0	32	93	0	112	36	16	13	32	1.89
22958--23017	29	2.1	29	90	6	95	25	23	16	35	1.95
23976--24005	15	2.0	15	100	0	60	60	6	0	33	1.23
31739--31787	24	2.1	23	88	3	71	24	20	0	55	1.44
33014--33047	2	17.0	2	100	0	68	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33494--33523	2	15.0	2	100	0	60	0	50	0	50	1.00
49258--49289	15	2.1	15	94	0	55	43	9	6	40	1.62
51887--52210	159	2.0	160	96	0	596	39	9	15	35	1.80
56517--56698	79	2.3	78	83	2	213	32	15	28	23	1.96
56654--56724	27	2.6	27	86	6	90	23	18	35	22	1.96
56639--56883	107	2.3	109	90	2	379	28	13	29	28	1.94
56765--56835	27	2.6	27	88	2	97	22	21	32	23	1.98
59465--59543	21	3.8	21	100	0	158	37	21	10	30	1.86
69346--69406	9	7.1	9	72	10	56	47	0	39	13	1.42
69325--69435	42	2.6	42	88	2	152	47	0	38	13	1.43
78869--78894	13	2.0	13	100	0	52	23	7	0	69	1.14
79402--79964	283	2.0	282	91	1	923	37	12	17	33	1.87
79990--80108	28	4.2	28	86	1	157	23	16	26	32	1.96
79984--80092	56	1.9	56	90	0	173	24	17	25	32	1.97
80006--80191	28	6.6	28	77	6	137	24	17	25	32	1.97
81886--82259	76	4.8	78	75	10	259	37	12	21	28	1.89
82048--82243	73	2.6	73	82	9	220	38	11	19	30	1.88
84653--84709	20	2.8	21	86	5	80	31	10	12	45	1.76
86234--86727	252	1.9	257	87	4	721	37	14	6	41	1.73
87245--87436	105	1.8	105	81	2	242	44	8	3	43	1.50
88237--88286	22	2.2	23	82	3	57	42	0	2	56	1.11
89115--89174	20	2.9	20	71	23	61	70	16	0	13	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97123--97172	26	1.9	26	83	0	64	44	4	0	52	1.20
97168--97217	24	2.0	25	84	3	66	42	4	0	54	1.19
97724--97798	33	2.3	34	81	11	93	70	1	2	25	1.08
97722--97784	32	2.0	32	87	6	92	74	1	3	20	1.04
98931--99056	64	2.0	63	84	4	164	37	7	5	50	1.53
100501--100535	16	2.3	15	90	5	52	45	2	0	51	1.16
100912--100955	6	7.5	6	82	5	54	47	18	2	31	1.61
101231--101267	18	2.1	18	89	0	56	54	0	2	43	1.14
101242--101297	28	2.1	26	86	6	76	60	0	0	39	0.97
104459--104501	17	2.7	16	80	20	54	48	0	0	51	1.00
109467--109532	2	33.0	2	81	0	69	48	6	3	42	1.43
111637--111675	3	13.0	3	100	0	78	33	0	0	66	0.92
112146--112202	20	2.8	20	81	0	60	40	12	7	40	1.70
113487--113517	14	2.2	14	100	0	62	32	6	25	35	1.82
116062--116099	18	2.2	18	90	4	60	39	10	5	44	1.61
116698--116731	16	2.1	16	88	0	50	41	5	0	52	1.25
117522--117561	20	2.1	19	86	13	55	12	17	0	70	1.18
117633--117679	10	4.4	11	79	12	53	4	34	0	61	1.15
118960--119148	39	4.9	39	69	14	140	42	8	13	34	1.76
118934--119148	78	2.8	75	80	8	238	44	9	12	33	1.75
120324--120395	20	3.5	20	81	9	83	37	13	18	30	1.89
127689--127763	20	3.8	19	78	7	87	33	12	12	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127689--127766	40	2.0	39	87	7	113	33	11	12	42	1.79

Tables:   1

The End!