genome.fa.s662.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold662
Parameters: 2 7 7 80 10 50 1000
Length:  43477

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3300--3344	21	2.1	21	84	8	56	22	20	4	53	1.63
5560--5585	13	2.0	13	100	0	52	30	15	15	38	1.88
5540--5603	32	2.0	33	87	3	94	29	14	15	40	1.86
6670--6787	51	2.3	51	81	9	141	41	10	22	25	1.85
6783--6991	80	2.7	78	80	8	192	30	10	26	32	1.90
6808--7338	79	6.7	76	72	13	263	31	9	28	31	1.88
6804--7341	237	2.3	237	83	3	672	30	9	28	31	1.89
6808--7341	158	3.4	160	75	10	447	31	9	27	31	1.89
7592--7646	22	2.5	22	96	0	101	56	10	12	20	1.66
8122--8203	43	2.0	41	85	4	110	25	21	21	30	1.99
8458--8496	20	1.9	21	94	5	71	74	0	0	25	0.82
8885--8952	30	2.2	31	81	2	84	26	45	11	16	1.81
9034--9089	22	2.5	22	85	0	76	25	46	14	14	1.82
9432--9460	5	5.8	5	100	0	58	82	0	0	17	0.66
14494--14538	22	2.0	23	82	4	56	33	20	2	44	1.63
22729--23652	42	21.9	42	78	5	611	16	27	17	38	1.91
22729--23695	169	5.7	169	75	8	635	16	27	17	38	1.91
22729--23652	211	4.4	212	77	8	676	16	27	17	38	1.91
22729--23695	127	7.6	126	74	8	608	16	27	17	38	1.91
22760--23650	254	3.5	250	77	5	821	16	27	17	38	1.91
24158--24232	24	3.0	24	75	13	71	74	2	1	21	1.01
24273--24355	43	2.0	41	85	4	112	24	24	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24612--24648	18	2.1	17	95	5	65	72	0	0	27	0.84
24951--25020	19	3.6	19	83	14	90	27	42	14	15	1.86
25192--25247	22	2.5	22	91	0	85	17	44	21	16	1.86
25008--25249	101	2.3	104	81	5	269	26	42	16	15	1.87
29739--29793	21	2.7	21	82	2	67	38	12	10	38	1.79
31382--31454	20	3.6	20	81	3	101	35	13	19	31	1.91
31400--31475	21	3.7	21	80	3	100	42	11	17	28	1.84
31382--31475	41	2.3	41	98	0	179	39	12	18	29	1.88
31514--31539	13	2.0	13	100	0	52	38	15	15	30	1.88
37647--37724	20	3.6	21	73	15	70	25	12	16	44	1.83
37711--37749	13	3.0	13	96	0	69	30	17	15	35	1.91
39542--39725	92	2.0	92	100	0	368	35	5	29	29	1.80
40290--40362	20	3.6	20	81	3	101	35	13	19	31	1.91
40308--40383	21	3.7	21	80	3	100	42	11	17	28	1.84
40290--40383	41	2.3	41	98	0	179	39	12	18	29	1.88
40422--40447	13	2.0	13	100	0	52	38	15	15	30	1.88
41212--41411	99	2.0	98	94	2	348	25	7	17	50	1.71
42089--42369	150	1.9	149	81	7	340	30	16	14	38	1.89

Tables:   1

The End!