genome.fa.s664.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold664
Parameters: 2 7 7 80 10 50 1000
Length:  152413

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5057--5383	32	10.8	32	81	9	178	20	21	28	29	1.98
5055--5258	94	2.2	93	81	9	227	20	23	27	28	1.99
4979--5329	126	2.8	121	79	5	326	23	20	27	28	1.99
5071--5772	29	24.2	28	77	10	526	21	18	29	29	1.97
5499--5592	31	3.1	31	85	13	133	23	20	28	27	1.99
5244--5772	57	9.4	55	79	10	507	21	18	29	30	1.97
5278--7088	27	65.9	27	79	8	665	28	15	30	26	1.96
5474--5804	85	3.8	86	77	6	255	23	17	29	28	1.97
5748--7088	27	49.1	27	82	5	1452	30	14	30	24	1.94
5748--7088	55	24.6	53	82	7	1342	30	14	30	24	1.94
5748--7088	82	16.4	81	83	5	1434	30	14	30	24	1.94
6246--6339	47	2.0	48	91	2	154	30	15	29	23	1.96
7001--7159	34	5.1	33	78	13	151	34	10	30	24	1.89
7056--7159	33	3.1	34	87	2	147	37	9	28	24	1.87
14949--14991	17	2.5	17	88	7	61	2	23	0	74	0.93
17794--17827	16	2.1	16	88	0	50	2	14	32	50	1.58
18006--18056	20	2.7	20	79	14	54	45	3	0	50	1.20
18029--18078	19	2.7	19	81	9	59	52	0	0	48	1.00
19281--19311	14	2.2	14	94	0	53	32	0	16	51	1.44
26103--26154	19	2.7	19	90	3	77	30	19	13	36	1.90
28948--28973	13	2.0	13	100	0	52	30	15	23	30	1.95
28928--28993	32	2.0	33	85	8	91	28	13	19	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29057--29109	13	4.5	13	73	26	64	32	13	16	37	1.88
29041--29109	33	2.1	33	89	5	104	30	11	20	37	1.88
34039--34065	13	2.1	13	100	0	54	29	14	14	40	1.86
34050--34105	19	2.8	20	86	10	80	30	16	14	39	1.88
34051--34105	20	2.8	19	86	10	76	30	14	14	40	1.86
34207--34238	10	3.2	10	100	0	64	43	18	18	18	1.88
35342--35366	13	1.9	13	100	0	50	28	16	16	40	1.89
35354--35408	20	2.8	20	88	2	76	30	12	20	36	1.90
41484--41553	29	2.2	32	82	12	83	22	2	21	52	1.60
50390--50415	13	2.0	13	100	0	52	38	15	15	30	1.88
52839--52892	19	2.8	20	91	2	83	29	16	16	37	1.91
52921--52974	20	2.7	19	88	11	74	31	14	18	35	1.91
54212--54259	21	2.2	21	81	3	60	60	0	2	37	1.09
54211--54291	20	3.8	20	67	25	51	59	2	2	35	1.24
55214--55239	13	2.0	13	100	0	52	30	15	15	38	1.88
55278--55353	21	3.7	21	82	3	109	28	18	11	40	1.86
55298--55371	20	3.7	20	80	3	94	31	20	14	33	1.93
55278--55371	41	2.3	41	98	0	179	29	19	13	37	1.90
57817--57855	13	3.0	13	96	0	69	35	15	17	30	1.91
57841--57919	20	3.7	20	78	15	77	44	15	15	25	1.85
64015--64040	13	2.0	13	100	0	52	30	15	15	38	1.88
64079--64154	21	3.7	21	82	3	109	28	18	11	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64099--64172	20	3.7	20	81	3	103	31	20	13	35	1.91
64079--64172	41	2.3	41	100	0	188	29	19	12	38	1.89
64511--64550	17	2.4	17	86	0	53	75	0	2	22	0.93
65053--65097	23	2.0	23	95	0	81	46	0	2	51	1.13
65052--65108	23	2.4	22	80	13	69	50	0	3	45	1.18
65085--65160	30	2.6	28	81	12	82	56	1	2	39	1.21
65106--65161	29	2.0	28	86	10	78	60	1	1	35	1.17
69338--69814	153	3.1	153	82	3	575	38	18	16	25	1.92
69339--69869	154	3.5	152	79	7	524	39	18	16	25	1.91
70846--70883	19	2.0	19	100	0	76	47	10	21	21	1.80
71917--71973	28	2.1	27	83	9	71	52	8	3	35	1.50
73510--73788	65	4.3	63	72	13	172	44	13	22	18	1.86
73668--73744	31	2.4	33	82	6	95	41	11	25	20	1.86
75342--75391	15	3.4	15	83	8	50	16	2	4	78	1.00
75563--76285	362	2.0	361	92	1	1189	25	20	15	38	1.92
86809--87092	151	1.9	153	82	7	362	35	14	19	30	1.92
89140--89194	27	2.0	27	82	10	67	49	9	5	36	1.58
93108--93140	15	2.2	15	94	0	57	3	21	0	75	0.93
93794--93824	13	2.3	14	94	5	55	64	6	6	22	1.40
94355--94381	14	1.9	14	100	0	54	74	0	0	25	0.83
97290--97349	31	1.9	31	90	6	95	68	8	0	23	1.16
97290--97341	21	2.5	22	78	9	63	69	7	0	23	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97521--97545	11	2.3	11	100	0	50	24	28	16	32	1.96
103236--103282	19	2.4	20	92	3	78	29	19	14	36	1.92
103318--103366	20	2.5	20	86	0	62	36	12	22	28	1.90
105133--105181	21	2.3	21	96	0	89	53	8	22	16	1.69
111437--111485	21	2.3	21	89	0	71	36	2	24	36	1.67
112128--112178	20	2.6	20	81	3	68	33	17	11	37	1.86
112123--112177	19	2.8	19	83	2	65	34	18	9	38	1.82
112200--112259	20	3.0	21	80	7	79	41	10	18	30	1.83
114583--114632	16	3.0	16	83	16	66	78	2	6	14	1.03
114582--114669	9	9.8	9	72	25	55	75	1	9	14	1.11
127500--127581	5	16.2	5	72	16	62	36	0	0	63	0.95
127465--127557	38	2.4	38	81	10	93	32	1	3	63	1.17
127491--127571	22	4.0	21	78	15	98	33	0	0	66	0.92
127500--127581	33	2.5	33	82	5	105	36	0	0	63	0.95
130700--130725	2	13.0	2	100	0	52	50	50	0	0	1.00
131512--131537	2	13.0	2	100	0	52	50	0	0	50	1.00
134137--134193	18	3.1	18	75	9	51	52	0	0	47	1.00
134790--134828	14	2.6	16	88	8	55	71	0	5	23	1.05
135181--135209	14	2.1	14	100	0	58	48	0	6	44	1.29
136211--136258	20	2.4	19	83	10	60	37	6	4	52	1.46
138212--138256	2	22.5	2	95	0	81	46	0	53	0	1.00
138416--138500	31	2.7	31	78	12	93	42	1	1	55	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138440--138499	17	3.8	16	78	14	61	41	1	0	56	1.09
138523--138578	17	3.2	16	76	18	51	33	1	3	60	1.24
140494--140532	17	2.3	17	95	0	69	25	10	5	58	1.51
142571--142605	13	2.5	14	90	9	54	0	14	0	85	0.59
146729--146787	20	2.8	20	82	5	64	37	13	11	37	1.82
146832--146885	20	2.6	21	85	2	74	29	14	12	42	1.83
147614--147701	29	3.1	27	73	7	77	39	6	13	39	1.71
147680--147718	20	1.9	21	89	5	62	43	2	12	41	1.56
147933--147988	14	4.1	14	80	15	55	51	3	3	41	1.36
151102--151473	196	1.9	196	92	1	620	36	13	14	34	1.86

Tables:   1

The End!