Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold666
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16969
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Found at i:801 original size:55 final size:54
Alignment explanation
Indices: 566--879 Score: 348
Period size: 54 Copynumber: 5.7 Consensus size: 54
556 AAAAACGGTA
* * * * *
566 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGGCG
* * * *
620 CCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTG-GTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAA-AGGCG
* *
674 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGGCG
* *
728 TCCTTG-TCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCC-TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAGGCG
* * *
783 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTTGTGTTGGCTTTGAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAAC-TTGTGTGGGCTTT-AAAG-----GCG
844 TCCTGCTCTTTGAGGACT-AAAGGTTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGG-TGCCACCAACTT
880 TGTCCCCACA
Statistics
Matches: 226, Mismatches: 20, Indels: 22
0.84 0.07 0.08
Matches are distributed among these distances:
53 15 0.07
54 105 0.46
55 54 0.24
56 17 0.08
60 7 0.03
61 28 0.12
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (54 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGGCG
Found at i:819 original size:26 final size:26
Alignment explanation
Indices: 735--820 Score: 77
Period size: 26 Copynumber: 3.2 Consensus size: 26
725 GTGTCCTTGT
735 CTTTGGGGACTGAAAGGTGCCACCAA
1 CTTTGGGGACTGAAAGGTGCCACCAA
* ** *
761 CTTGTGTGGG-CTTTGAAAGGGGTCCTGC-T
1 CTT-TG-GGGAC--TGAAAGGTG-CCACCAA
790 CTTTGGGGACTGAAAGGTGCCACCAA
1 CTTTGGGGACTGAAAGGTGCCACCAA
816 CTTTG
1 CTTTG
821 TGTTGGCTTT
Statistics
Matches: 45, Mismatches: 8, Indels: 14
0.67 0.12 0.21
Matches are distributed among these distances:
25 3 0.07
26 16 0.36
27 6 0.13
28 6 0.13
29 11 0.24
30 3 0.07
ACGTcount: A:0.20, C:0.21, G:0.33, T:0.27
Consensus pattern (26 bp):
CTTTGGGGACTGAAAGGTGCCACCAA
Found at i:1597 original size:54 final size:55
Alignment explanation
Indices: 1501--1770 Score: 293
Period size: 54 Copynumber: 4.9 Consensus size: 55
1491 ATAAAGTGTA
* * * * * * * **
1501 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCCACTCGAGTGGGCTTTGAAAAGACG
1 TCCT-CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGTG
* * **
1557 TCCT-ACTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-ACGAGGTG
1 TCCTCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGTG
*
1610 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT--AAAGGTG
1 TCCT-CTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGTG
* *
1664 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG--AAGGGG
1 TCCT-CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGTG
*
1718 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG
1 TCCT-CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG
1771 AAAAAGCATC
Statistics
Matches: 186, Mismatches: 21, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
53 12 0.06
54 130 0.70
55 33 0.18
56 11 0.06
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (55 bp):
TCCTCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGTG
Found at i:1638 original size:55 final size:54
Alignment explanation
Indices: 1562--1764 Score: 311
Period size: 54 Copynumber: 3.7 Consensus size: 54
1552 AGACGTCCTA
*
1562 CTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTACGAGGTGTCCTGCT
1 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTA-GAGGTGTCCTGCT
* *
1617 CTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAGGTGTCCTGCT
1 CTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAGAGGTGTCCTGCT
* *
1671 CTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-GAAGGGGTCCTGCT
1 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAG-AGGTGTCCTGCT
*
1725 CTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
1 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
1765 GAAAAGAAAA
Statistics
Matches: 138, Mismatches: 7, Indels: 7
0.91 0.05 0.05
Matches are distributed among these distances:
53 4 0.03
54 96 0.70
55 34 0.25
56 4 0.03
ACGTcount: A:0.19, C:0.21, G:0.32, T:0.29
Consensus pattern (54 bp):
CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAGAGGTGTCCTGCT
Found at i:1686 original size:26 final size:26
Alignment explanation
Indices: 1657--1743 Score: 72
Period size: 26 Copynumber: 3.3 Consensus size: 26
1647 TGTGGGCTTT
1657 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
1683 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
*
1712 -AAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
1737 AAAGGTG
1 AAAGGTG
1744 CCACCAACTT
Statistics
Matches: 45, Mismatches: 8, Indels: 16
0.65 0.12 0.23
Matches are distributed among these distances:
25 5 0.11
26 18 0.40
27 6 0.13
28 11 0.24
29 5 0.11
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.28
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:2668 original size:55 final size:55
Alignment explanation
Indices: 2431--2742 Score: 343
Period size: 55 Copynumber: 5.7 Consensus size: 55
2421 TCAAAGTGTA
* * * * * *
2431 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
2486 -CTCTACTCTTTGAGG-CTTGAAAGGTGCCACCGAC--GTGTGGGCTTT-AAAGGTG
1 TC-CTGCTCTTTGAGGAC-TGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
2538 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * *
2592 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * **
2647 TCCTGCTCTTTGGGGACTGAAATGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
2708 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
2743 CGTCCCCACA
Statistics
Matches: 222, Mismatches: 20, Indels: 25
0.83 0.07 0.09
Matches are distributed among these distances:
52 28 0.13
53 21 0.09
54 59 0.27
55 77 0.35
56 3 0.01
60 16 0.07
61 18 0.08
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:3494 original size:26 final size:26
Alignment explanation
Indices: 3462--3551 Score: 67
Period size: 26 Copynumber: 3.3 Consensus size: 26
3452 TGTGGGCTTT
3462 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
3488 AAAGGTG-CCACCAACTTGTGTGTGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-G-GGAC--TG
*
3518 AAAGGGGGTCCTGCTCTTTGGGGACTG
1 AAA-GGTGTCCTGCTCTTTGGGGACTG
3545 AAAGGTG
1 AAAGGTG
3552 CCACCAACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 18
0.64 0.11 0.25
Matches are distributed among these distances:
25 3 0.06
26 13 0.28
27 7 0.15
28 4 0.09
29 4 0.09
30 7 0.15
31 6 0.13
32 3 0.06
ACGTcount: A:0.19, C:0.18, G:0.36, T:0.28
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:3548 original size:57 final size:55
Alignment explanation
Indices: 3384--3621 Score: 293
Period size: 54 Copynumber: 4.2 Consensus size: 55
3374 GAGTAAAAAA
* * * * *
3384 GTGCCACCAACTCGTGTGGGCTTTGAAA-GGGTCATGCTCTTTTGAGATTGAAAG
1 GTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAG
*
3438 GTGCCACCAACTTGTGTGGGCTTT-AAAGGTGTCCTGCTCTTTGGGGACTGAAAG
1 GTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAG
3492 GTGCCACCAACTTGTGTGTGGCTTTGAAAGGGGGTCCTGCTCTTTGGGGACTGAAAG
1 GTGCCACCAACTTGTGTG-GGCTTTGAAA-GGGGTCCTGCTCTTTGGGGACTGAAAG
* ** *
3549 GTGCCACCAACTTGTGTGGGCCTTAGGAAAGAAAAGCATCCTGCTCTTTGAGGACT-AAAG
1 GTGCCACCAACTTGTGTGGG-CTT-TGAAAG----GGGTCCTGCTCTTTGGGGACTGAAAG
3609 GTGCCACCAACTT
1 GTGCCACCAACTT
3622 CGTCCCCACA
Statistics
Matches: 163, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
53 3 0.02
54 62 0.38
55 6 0.04
56 5 0.03
57 48 0.29
58 4 0.02
60 17 0.10
61 18 0.11
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (55 bp):
GTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAG
Found at i:4250 original size:42 final size:42
Alignment explanation
Indices: 4173--4253 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 42
4163 TCATTTTCCA
* *
4173 AGGACAAAGGAAAAAGGGAAATGAAATACGTTCCTGCTCTCTG
1 AGGACAAAGAAAAAAGGAAAATGAAATA-GTTCCTGCTCTCTG
4216 AGGACAAAGAAAAAAGGAAAAT-AAAGT-GTATCCTGCTC
1 AGGACAAAGAAAAAAGGAAAATGAAA-TAGT-TCCTGCTC
4254 ATGAGGAGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
41 2 0.06
42 11 0.32
43 21 0.62
ACGTcount: A:0.44, C:0.15, G:0.23, T:0.17
Consensus pattern (42 bp):
AGGACAAAGAAAAAAGGAAAATGAAATAGTTCCTGCTCTCTG
Found at i:4339 original size:55 final size:55
Alignment explanation
Indices: 4246--4561 Score: 363
Period size: 55 Copynumber: 5.7 Consensus size: 55
4236 ATAAAGTGTA
* * * * *
4246 TCCTGCTC-ATGAGGAGT-AAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * *
4299 TCCTACTCTTTGAGGATTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
4354 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAAACTTGTGTGGGCTTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACC-AACTTGTGTGGGC-TTTGAAAGGTG
* *
4411 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* **
4466 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
*
4527 TCCTGCTCTTTGAGGAC-AAAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
4562 CGTCCCCACA
Statistics
Matches: 230, Mismatches: 19, Indels: 21
0.85 0.07 0.08
Matches are distributed among these distances:
53 7 0.03
54 9 0.04
55 109 0.47
56 37 0.16
57 32 0.14
58 2 0.01
60 17 0.07
61 17 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:4433 original size:26 final size:26
Alignment explanation
Indices: 4404--4491 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
4394 TGGGCTTTTA
4404 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
4430 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
*
4459 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
4485 AAAGGTG
1 AAAGGTG
4492 CCACCAACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 14
0.68 0.12 0.20
Matches are distributed among these distances:
25 3 0.06
26 18 0.38
27 6 0.13
28 6 0.13
29 11 0.23
30 3 0.06
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:4460 original size:29 final size:29
Alignment explanation
Indices: 4428--4516 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 29
4418 CTTTGGGGAC
4428 TGAAAGGTGCCACCAACTTGTGTGGGCTT
1 TGAAAGGTGCCACCAACTTGTGTGGGCTT
* ** *
4457 TGAAAGGGGTCCTGC-TCTT-TG-GGGAC--
1 TGAAAGGTG-CCACCAACTTGTGTGGG-CTT
4483 TGAAAGGTGCCACCAACTTGTGTGGGCTT
1 TGAAAGGTGCCACCAACTTGTGTGGGCTT
4512 TGAAA
1 TGAAA
4517 AGAAAAAGCA
Statistics
Matches: 45, Mismatches: 8, Indels: 14
0.67 0.12 0.21
Matches are distributed among these distances:
25 3 0.07
26 11 0.24
27 6 0.13
28 6 0.13
29 16 0.36
30 3 0.07
ACGTcount: A:0.21, C:0.19, G:0.33, T:0.27
Consensus pattern (29 bp):
TGAAAGGTGCCACCAACTTGTGTGGGCTT
Found at i:4494 original size:112 final size:111
Alignment explanation
Indices: 4264--4559 Score: 366
Period size: 112 Copynumber: 2.6 Consensus size: 111
4254 ATGAGGAGTA
* * *
4264 AAAGTGCCACCAACTCGTGTGGGC-TTTGAAAGGCGTCCTACTCTTTGAGGATTGAAAGGTGCCA
1 AAAGTGCCACCAACTTGTGTGGGCTTTTAAAAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCCA
*
4328 CCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGG
66 CCAACGTGTGTGGGCTTTAAGAGGGGTCCTGCTCTTTGAGGACTGG
* * * *
4374 AAAATGCCACCAAACTTGTGTGGGCTTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCC
1 AAAGTGCCACC-AACTTGTGTGGGCTTTTAAAAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCC
* *
4439 ACCAACTTGTGTGGGCTTTGAA-AGGGGTCCTGCTCTTTGGGGACT-G
65 ACCAACGTGTGTGGGCTTT-AAGAGGGGTCCTGCTCTTTGAGGACTGG
* * * *
4485 AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGAC-AAAAG
1 AAA-GTGCCACCAACTTGTGTGGGCTTTTAAAAG-----GCGTCCTACTCTTTGAGGACTGAAAG
4549 GTGCCACCAAC
60 GTGCCACCAAC
4560 TTCGTCCCCA
Statistics
Matches: 161, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
110 10 0.06
111 37 0.23
112 80 0.50
113 2 0.01
115 15 0.09
116 17 0.11
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (111 bp):
AAAGTGCCACCAACTTGTGTGGGCTTTTAAAAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCCA
CCAACGTGTGTGGGCTTTAAGAGGGGTCCTGCTCTTTGAGGACTGG
Found at i:5317 original size:55 final size:54
Alignment explanation
Indices: 5200--5387 Score: 245
Period size: 55 Copynumber: 3.5 Consensus size: 54
5190 TGAGGAGTAA
* * * *
5200 AAAG-TGCCACCAACTCGTGTGGGCTTGAAAGGCGTCCTACTCTTTGAGGACTG
1 AAAGATGCCACCAACTTGTGTGGGCTTTAAAGGTGTCCTGCTCTTTGAGGACTG
* * * *
5253 AAAGGTGCCACCAACGTGTATGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGATTGG
1 AAAGATGCCACCAACTTGTGTGGGCTTTAA-AGGTGTCCTGCTCTTTGAGGACT-G
*
5309 AAA-ATGCCACCAACTTGTGTGGGCTTTAAATGGTGTCCTGCTCTTTGGGGACTG
1 AAAGATGCCACCAACTTGTGTGGGCTTTAAA-GGTGTCCTGCTCTTTGAGGACTG
*
5363 AAAGGTGCCACCAACTTGTGTGGGC
1 AAAGATGCCACCAACTTGTGTGGGC
5388 GTAGGAAAGA
Statistics
Matches: 117, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
53 4 0.03
54 26 0.22
55 83 0.71
56 4 0.03
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (54 bp):
AAAGATGCCACCAACTTGTGTGGGCTTTAAAGGTGTCCTGCTCTTTGAGGACTG
Found at i:6145 original size:55 final size:55
Alignment explanation
Indices: 6061--6377 Score: 338
Period size: 55 Copynumber: 5.7 Consensus size: 55
6051 AATAAAGTGT
* * **
6061 ATCCTGCTCATTGAGGAGTAGAAA-GTGCCACCAACTCATGTGGGCTTTGAAAGGC
1 ATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
* * * *
6116 ATCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTATGGGCTTT-AAGAGGT
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGC
* * * *
6171 GTCCTGCTCTTTGAGGATTGGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAATGGT
1 ATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA-GGC
* * * *
6226 GTCCTGCTCTTTGGGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGG
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
* * *
6281 GTCCTACTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GC
6342 ATCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
6378 CGTCCCCACA
Statistics
Matches: 225, Mismatches: 25, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
54 10 0.04
55 170 0.76
56 11 0.05
60 17 0.08
61 17 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (55 bp):
ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
Found at i:6279 original size:29 final size:29
Alignment explanation
Indices: 6246--6332 Score: 87
Period size: 29 Copynumber: 3.1 Consensus size: 29
6236 TTGGGGACTA
6246 AAAGGTGCCACCAACTTGTGTGGGCTTTG
1 AAAGGTGCCACCAACTTGTGTGGGCTTTG
* *
6275 AAAGGGGTCCTA-C-TCTT-TG-GGGAC--TG
1 AAAGGTG-CC-ACCAACTTGTGTGGG-CTTTG
6301 AAAGGTGCCACCAACTTGTGTGGGCTTTG
1 AAAGGTGCCACCAACTTGTGTGGGCTTTG
6330 AAA
1 AAA
6333 AGAAAAAGCA
Statistics
Matches: 45, Mismatches: 4, Indels: 18
0.67 0.06 0.27
Matches are distributed among these distances:
24 1 0.02
25 3 0.07
26 11 0.24
27 6 0.13
28 6 0.13
29 14 0.31
30 3 0.07
31 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (29 bp):
AAAGGTGCCACCAACTTGTGTGGGCTTTG
Found at i:7100 original size:55 final size:55
Alignment explanation
Indices: 7002--7317 Score: 370
Period size: 55 Copynumber: 5.7 Consensus size: 55
6992 ATAAAGTGTA
* * * * *
7002 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * *
7057 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTATGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * *
7112 TCCTGCTCTTTGAGGATTGGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAATGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA-GGCG
* *
7167 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
7222 TCCTACTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
7283 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
7318 CGTCCCCACA
Statistics
Matches: 227, Mismatches: 23, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
54 7 0.03
55 175 0.77
56 11 0.05
60 17 0.07
61 17 0.07
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:7192 original size:26 final size:26
Alignment explanation
Indices: 7163--7247 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
7153 GGCTTTAAAT
*
7163 GGTGTCCTGCTCTTTGGGGACTGAAA
1 GGTGTCCTACTCTTTGGGGACTGAAA
*
7189 GGTG-CC-ACCAACTTGTGTGGG-CTTTGAAA
1 GGTGTCCTA-C-TCTT-TG-GGGAC--TGAAA
*
7218 GGGGTCCTACTCTTTGGGGACTGAAA
1 GGTGTCCTACTCTTTGGGGACTGAAA
7244 GGTG
1 GGTG
7248 CCACCAACTT
Statistics
Matches: 45, Mismatches: 5, Indels: 18
0.66 0.07 0.26
Matches are distributed among these distances:
25 3 0.07
26 15 0.33
27 6 0.13
28 6 0.13
29 11 0.24
30 3 0.07
31 1 0.02
ACGTcount: A:0.18, C:0.19, G:0.35, T:0.28
Consensus pattern (26 bp):
GGTGTCCTACTCTTTGGGGACTGAAA
Found at i:7216 original size:29 final size:29
Alignment explanation
Indices: 7136--7272 Score: 91
Period size: 29 Copynumber: 4.9 Consensus size: 29
7126 GATTGGAAAA
7136 TGCCACCAACTTGTGTGGGCTTT-AAATGG
1 TGCCACCAACTTGTGTGGGCTTTGAAA-GG
** *
7165 TGTCCTGC-TCTT-TG-GGGAC--TGAAAGG
1 TG-CCACCAACTTGTGTGGG-CTTTGAAAGG
7191 TGCCACCAACTTGTGTGGGCTTTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGG
* *
7220 GGTCCTA-C-TCTT-TG-GGGAC--TGAAAGG
1 TG-CC-ACCAACTTGTGTGGG-CTTTGAAAGG
7246 TGCCACCAACTTGTGTGGGCTTTGAAA
1 TGCCACCAACTTGTGTGGGCTTTGAAA
7273 AGAAAAAGCA
Statistics
Matches: 81, Mismatches: 10, Indels: 34
0.65 0.08 0.27
Matches are distributed among these distances:
24 1 0.01
25 6 0.07
26 19 0.23
27 15 0.19
28 12 0.15
29 21 0.26
30 6 0.07
31 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (29 bp):
TGCCACCAACTTGTGTGGGCTTTGAAAGG
Found at i:8052 original size:55 final size:53
Alignment explanation
Indices: 7930--8197 Score: 243
Period size: 55 Copynumber: 4.8 Consensus size: 53
7920 AAGAGGAAAA
* * * * *
7930 TAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTT
1 TAAAG-GTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACT-GTGTGGGCTT
* * * * *
7985 TGAAAGGCGTCCTACTCTTTTAGGACTGAAAGGTGCCACCAACGTGTATGGGATT
1 T-AAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAAC-TGTGTGGGCTT
* *
8040 TAAGAGGTGTCCTGCTCTTTGAGGATTGGAAA-ATGCCACCAACTTGTGTGGGCTT
1 TAA-AGGTGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAAC-TGTGTGGGCTT
* *
8095 TAAATGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTTTGTGGGCTT
1 TAAA-GGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAAC-TGTGTGGGCTT
**
8150 TGAAAAGAAAAGCATCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACT
1 T--AAAG----GTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACT
8198 TCGTCCCCAC
Statistics
Matches: 176, Mismatches: 25, Indels: 21
0.79 0.11 0.09
Matches are distributed among these distances:
54 7 0.04
55 122 0.69
56 10 0.06
57 3 0.02
58 1 0.01
59 15 0.09
60 18 0.10
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28
Consensus pattern (53 bp):
TAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTGTGTGGGCTT
Found at i:8124 original size:937 final size:937
Alignment explanation
Indices: 5180--15913 Score: 17633
Period size: 937 Copynumber: 11.5 Consensus size: 937
5170 ATAAAGTGTA
* * * * * * *
5180 TCCTACTCATTGAGGAGTAAAAAGTGCCACCAAC-TCGTGTGGGCTTGAA-AGGCGTCCTACTCT
1 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGT-GTGTGGGCTTTAAGAGGTGTCCTGCTCT
* * * * * *
5243 TTGAGGACT-GAAAGGTGCCACCAACGTGTATGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGATT
65 TTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACT
* *
5307 GGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAATGGTGTCCTGCTCTTTGGGGACTGAAAGGTG
129 -GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA-GGGGTCCTGCTCTTTGGGGACTGAAAGGTG
* * *
5370 CCACCAACTTGTGTGGGCGTAGGAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACC
192 CCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACC
*
5435 AACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGA
257 AACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGG
* *
5500 CCCGGGCAAAATAAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGC
322 CCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGC
5565 AAAGACAAATAGACACCATTTTATCTGCGGCCGCATGTTGTGACCTTAGAGTGATTAAACAAGAG
387 AAAGACAAATAGACACCATTTTATCTGCGGCCGCATGTTGTGACCTTAGAGTGATTAAACAAGAG
5630 GTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTT
452 GTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTT
*
5695 GTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGACAGGTGTT
517 GTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTAACCTCCTTAGACAGGTGTT
5760 GGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTT
582 GGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTT
5825 GTGCAAACTTTAGGAGGGAAAAGAAATGGAAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGA
647 GTGCAAACTTTAGGAGGGAAAAGAAATGG-AAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGA
5890 GGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTT
711 GGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTT
*
5955 GAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATAT
776 GAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATAC
*
6020 GTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAGAAA
841 GTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAA
* *
6085 GTGCCACCAACTCATGTGGGCTTTGAAAGGCA
906 GTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
*
6117 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTATGGGCTTTAAGAGGTGTCCTGCTCTT
1 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTT
* * *
6182 TGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAATGGTGTCCTGCTCTTTGGGGACTAA
66 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGA
*
6247 AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTACTCTTTGGGGACTGAAAGGTGCCAC
131 AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAGGTGCCAC
6312 CAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACT
196 CAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACT
*
6377 TCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGGCTCG
261 TCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGGCCCG
*
6442 GACAAAATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAG
326 GACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAG
6507 ACAAAATAGACACCATTTTATCTGCGGCCGCATGTTGTGACCTTAGAGTGATTAAACAAGAGGTT
391 AC-AAATAGACACCATTTTATCTGCGGCCGCATGTTGTGACCTTAGAGTGATTAAACAAGAGGTT
6572 TAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTA
455 TAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTA
6637 GGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTAACCTCCTTAGACAGGTGTTGGT
520 GGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTAACCTCCTTAGACAGGTGTTGG-
6702 TTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGT
584 TTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGT
6767 GCAAACTTTAGGAGGGAAAAGAAATGGAAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGG
649 GCAAACTTTAGGAGGGAAAAGAAATGG-AAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGG
6832 ATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGA
713 ATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGA
6897 GGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGT
778 GGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGT
*
6962 CCTGCTCTTTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGT
843 CCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGT
7027 GCCACCAACTCGTGTGGGCTTTGAAAGGCG
908 GCCACCAACTCGTGTGGGCTTTGAAAGGCG
*
7057 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTATGGGCTTTAAGAGGTGTCCTGCTCTT
1 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTT
* *
7122 TGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAATGGTGTCCTGCTCTTTGGGGACTGA
66 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGA
*
7187 AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTACTCTTTGGGGACTGAAAGGTGCCAC
131 AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAGGTGCCAC
7252 CAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACT
196 CAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACT
7317 TCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGGCCCG
261 TCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGGCCCG
*
7382 GACAAAATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAG
326 GACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAG
7447 ACAAATAGACACCATTTTATCTGCGGCCGCATGTTGTGACCTTAGAGTGATTAAACAAGAGGTTT
391 ACAAATAGACACCATTTTATCTGCGGCCGCATGTTGTGACCTTAGAGTGATTAAACAAGAGGTTT
7512 AATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAG
456 AATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAG
7577 GGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTAACCTCCTTAGACAGGTGTTGGTT
521 GGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTAACCTCCTTAGACAGGTGTTGGTT
7642 ACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
586 ACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
7707 AAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGATG
651 AAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGATG
7772 AAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGA
716 AAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGA
7837 CAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTCCT
781 CAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTCCT
*
7902 GCTCTTTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGTGCC
846 GCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGTGCC
7967 ACCAACTCGTGTGGGCTTTGAAAGGCG
911 ACCAACTCGTGTGGGCTTTGAAAGGCG
* * *
7994 TCCTACTCTTTTAGGACTGAAAGGTGCCACCAACGTGTATGGGATTTAAGAGGTGTCCTGCTCTT
1 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTT
* *
8059 TGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAATGGTGTCCTGCTCTTTGGGGACTGA
66 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGA
* ** *
8124 AAGGTGCCACCAACTTTTGTGGGCTTTGAAAAGAAAAGCATCCTGCTCTTTGAGGACT-AAAGGT
131 AAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG----GGGTCCTGCTCTTTGGGGACTGAAAGGT
* *** ** ** **** * *** * *
8188 GCCACCAACTT-CGTCCCCACAT-ATATCGAATCCTCCA-CCTACTAGCT-AGGCCTTAAA-CTG
191 GCCACCAACTTGTGTGGGC-TTTGA-AAAGAA-AAAGCATCCTGCTCTTTGAGGAC-TAAAGGTG
* * * * * * * * * * *** * *
8248 TCGA--AAATT-GGCCCGGACA-AAAT-GAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTCTGA
252 -CCACCAACTTCGTCCC-CACATATATCGA-AT-CCTCCACCT-ACTAGC-TAGGCC---T-TAA
* * * *** ** * * * * * *
8308 GTT-TCAGGAACA-GGGCAAAGAC-AAATAGACACCAT-TTTATCTGCGGCCGCATGTTGTGACC
307 ATTGTC--GAAAATTGGCCCGGACAAAAT-G--A-GGTGTCTA-CAGCTGCC-CCTCTT-TGGCC
* * *** ** * * * * ** *
8369 --TT-AGAGTGATTA--AACAAGAGGTTTA-ATTAA-AGCTTCACCA--TGAT-GGAGGGTGTAT
363 GTTTCTGAGT-ATCAGGAAC-AG-GGCAAAGACAAATAG--ACACCATTTTATCTGCGGCCGCAT
* * * * * * ** * * *
8424 -TGGCGACGGTTCCGA-TGGA--AAA-ATGA-GTTT--GTAGGGTTTGTCCCCCT-ACT--A-GG
423 GTTGTGAC-CTT-AGAGT-GATTAAACAAGAGGTTTAATTAAAG-CT-TCACCATGA-TGGAGGG
* * * * * * ** ** * * * ** *
8477 T-T-TT-GAGA--TTTTCTAAGGCTTAACCT-CCTTAGACAGGTGTTGGT---TACTAC-AGGCT
482 TGTATTGGCGACGGTTCCGATGG--AAAAATGAGTTTG-TAGG-GTTTGTCCCCCCTACTAGGTT
* ** * ** * * * *
8532 TTG-G------GAAGG-TTTGCC-AC-TA-ACTTGTG-TGG--GCT-----TTTTGGG--TG-CT
543 TTGAGATTTTCTAAGGCTTAACCTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTT
**** ** * * ** *** * ** *
8575 G-C-C-AACTTGTGCAAACTTTAGGAGGGAAAAGAAATGGAAAAGGGTGTC-CACTTT-TCAAGG
608 GCCACTAACTTGTGTGGGCTTT--TTGGG---TG--CTGCCAACTTGTG-CAAACTTTAGGAGGG
* * ** * *
8635 ACAAAGGAAA---AGAGGATG---A--AAT--GGGTC-------------------------TTG
665 A-AAA-GAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGATGAAATGGGTCTTG
8665 CTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAA
728 CTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAA
*
8730 GAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTCCTGCTCTCTAAGGA
793 GAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTCCTGCTCTCTGAGGA
8795 CAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGT
858 CAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGT
8860 GGGCTTTGAAAGGCG
923 GGGCTTTGAAAGGCG
*
8875 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTCTGGGCTTTAAGAGGTGTCCTGCTCTT
1 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTT
* * **
8940 TGAGGACTGGAAAATACCACCAACTTGTGTGGGGTTTAAAAGGTGTCCTATTCTTTGGGGACTGA
66 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGA
9005 AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAGGTGCCAC
131 AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAGGTGCCAC
* * *
9070 CAACTTGTGTGGGCGTAGGAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACT
196 CAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACT
*
9135 TCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGACCCG
261 TCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGGCCCG
* *
9200 GGCAAAATAAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAG
326 GACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAG
* *
9265 ACAAATAGACACCATTTTATCAGCGGCCACATGTTGTGACCTTAGAGTGATTAAACAAGAGGTTT
391 ACAAATAGACACCATTTTATCTGCGGCCGCATGTTGTGACCTTAGAGTGATTAAACAAGAGGTTT
*
9330 AATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATAGAAAAATGAGTTTGTAG
456 AATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAG
*
9395 GGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGACAGGTGTTGGTT
521 GGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTAACCTCCTTAGACAGGTGTTGGTT
9460 ACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
586 ACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
9525 AAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGATG
651 AAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGATG
9590 AAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGA
716 AAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGA
9655 CAAAGTGAAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTCC
781 CAAAGTG-AAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTCC
*
9720 AGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGTGC
845 TGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGTGC
9785 CACCAACTCGTGTGGGCTTTGAAAGGCG
910 CACCAACTCGTGTGGGCTTTGAAAGGCG
9813 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTT
1 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTT
9878 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGA
66 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGA
* * **
9943 AAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGGTCCTTCTCTTTGGGGACTGAAACTTGCCAC
131 AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAGGTGCCAC
*
10008 CAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGAATAAAGGTGCCACCAACT
196 CAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACT
*
10073 TCATCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGGCCCG
261 TCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGGCCCG
10138 GACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCA-GAACAGGGCAAAG
326 GACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAG
*
10202 ACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTAGAGTGATTAAACAAGAGGTTT
391 ACAAATAGACACCATTTTATCTGCGGCCGCATGTTGTGACCTTAGAGTGATTAAACAAGAGGTTT
10267 AATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAG
456 AATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAG
*
10332 GGTTTGT-CCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGACAGGTGTTGGTT
521 GGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTAACCTCCTTAGACAGGTGTTGGTT
*
10396 ACTATAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
586 ACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
*
10461 AAA-TTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGATG
651 AAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGATG
*
10525 AAATTGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGA
716 AAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGA
10590 CAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTCCT
781 CAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTCCT
* *
10655 TCTCTCTGAGGACAAAGAAAGAGGAAAATAATGTGTATCCTGCTCATTGAGGAGTAAAAAGTGCC
846 GCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGTGCC
10720 ACCAACTCGTGTGGGCTTTGAAAGGCG
911 ACCAACTCGTGTGGGCTTTGAAAGGCG
10747 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTT
1 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTT
10812 TGAGGACTGGAAAATAGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTG
66 TGAGGACTGGAAAAT-GCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTG
**
10877 AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAACTTGCCA
130 AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAGGTGCCA
10942 CCAACTTGTGTGGGCTTTGAAAAG-AAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAAC
195 CCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAAC
*
11006 TTCGTCCCAACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGGCCC
260 TTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGGCCC
11071 GGACAAAATGAGGTGTCTAGCAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAA
325 GGACAAAATGAGGTGTCTA-CAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAA
11136 AGACAAATAGACACCATTTTATCTGCGGCCAGCATGTTGTGACCTTAGAGTGATTAAACAAGAGG
389 AGACAAATAGACACCATTTTATCTGCGGCC-GCATGTTGTGACCTTAGAGTGATTAAACAAGAGG
11201 TTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTG
453 TTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTG
11266 TAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTAACCTCCTTAGACAGGTGTTG
518 TAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTAACCTCCTTAGACAGGTGTTG
11331 GTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTG
583 GTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTG
11396 TGCAAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGG
648 TGCAAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGG
11461 ATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGA
713 ATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGA
11526 GGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGT
778 GGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGT
11591 CCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGT
843 CCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGT
11656 GCCACCAACTCGTGTGGGCTTTGAAAGGCG
908 GCCACCAACTCGTGTGGGCTTTGAAAGGCG
11686 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTT
1 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTT
*
11751 TGAGGACTGGAAAATACCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGA
66 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGA
11816 AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAGGTGCCAC
131 AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAGGTGCCAC
* * *
11881 CAACTTGTGTGGGCGTAGGAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACT
196 CAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACT
*
11946 TCGT-CCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGACCCG
261 TCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGGCCCG
* *
12010 GGCAAAATAAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAG
326 GACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAG
*
12075 ACAAATAGACACCATTTTATCTGCGGCCACATGTTGTGACCTTAGAGTGATTAAACAAGAGGTTT
391 ACAAATAGACACCATTTTATCTGCGGCCGCATGTTGTGACCTTAGAGTGATTAAACAAGAGGTTT
12140 AATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAG
456 AATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAG
12205 GGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTAACCTCCTTAGACAGGTGTTGGTT
521 GGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTAACCTCCTTAGACAGGTGTTGGTT
12270 ACTACAAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTG
586 ACTAC-AGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTG
*
12335 CAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGAT
650 CAAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGAT
12400 GAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGG
715 GAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGG
*
12465 ACAAAGTGAAAAAAAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTCC
780 ACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTCC
12530 TGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGTGC
845 TGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGTGC
*
12595 CACCAACTCGTGTGGGCTTTGAAAGGCA
910 CACCAACTCGTGTGGGCTTTGAAAGGCG
12623 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTT
1 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTT
**
12688 TGAGGACTGGAAAATGCCACCAACTTGTGCAGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGA
66 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGA
* **
12753 AAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGGTCCTGCTCTTTGGGGACTGAAACTTGCCAC
131 AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAGGTGCCAC
* *
12818 CAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGAATAAAGGTGCCACTAACT
196 CAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACT
12883 TCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGGCCCG
261 TCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGGCCCG
*
12948 GACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAAGAACAGGGCAAAG
326 GACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAG
* *
13013 ACAAATAGACACCATTTTATCCGCGGCCGCGTGTTGTGACCTTAGAGTGATTAAACAAGAGGTTT
391 ACAAATAGACACCATTTTATCTGCGGCCGCATGTTGTGACCTTAGAGTGATTAAACAAGAGGTTT
13078 AATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAG
456 AATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAG
*
13143 GGTTTGT-CCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGACAGGTGTTGGTT
521 GGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTAACCTCCTTAGACAGGTGTTGGTT
13207 ACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
586 ACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
*
13272 AAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGATG
651 AAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGATG
*
13337 AAATTGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGA
716 AAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGA
*
13402 CAAAGTGAAAAAAAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTCCT
781 CAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTCCT
* * *
13467 TCTCTCTAAGGACAAAGAAAGAGGAAAATAATGTGTATCCTGCTCATTGAGGAGTAAAAAGTGCC
846 GCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGTGCC
13532 ACCAACTCGTGTGGGCTTTGAAAGGCG
911 ACCAACTCGTGTGGGCTTTGAAAGGCG
* *
13559 TCCTACTCTTTGAAGACTGAAAGGTGCCACCAACGTGTCTGGGCTTTAAGAGGTGTCCTGCTCTT
1 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTT
*
13624 TGAGGACTGGAAAATACCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGA
66 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGA
13689 AAGGTGCCACCAACTTGTGTAGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAGGTGCCA
131 AAGGTGCCACCAACTTGTGT-GGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAGGTGCCA
* * *
13754 CCAACTTGTGTGGGCGTAGGAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAAC
195 CCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAAC
* *
13819 TTCGTCCCCACATAAATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGACCC
260 TTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGGCCC
* * * *
13884 GGGCAAAATAAGGTTTCTACAGCTGCTCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAA
325 GGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAA
*
13949 GACAAATAGACACCATTTTATCTGCGGCCACATGTTGTGACCTTAGAGTGATTAAACAAGAGGTT
390 GACAAATAGACACCATTTTATCTGCGGCCGCATGTTGTGACCTTAGAGTGATTAAACAAGAGGTT
14014 TAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTA
455 TAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTA
14079 GGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTAACCTCCTTAGACAGGTGTTGGT
520 GGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTAACCTCCTTAGACAGGTGTTGGT
14144 TACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTG
585 TACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTG
*
14209 CAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGAT
650 CAAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGAT
14274 GAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGATA-AAAAGGAAAGTGTCCTGCTTCTTGAG
715 GAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGA-AGAAAAGGAAAGTGTCCTGCTTCTTGAG
*
14338 GACAAAGTGAAAAAAAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTC
779 GACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTC
*
14403 CTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAATGTATCCTGCTCATTGAGGAGTAAAAAGTG
844 CTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGTG
14468 CCACCAACTCGTGTGGGCTTTGAAAGGCG
909 CCACCAACTCGTGTGGGCTTTGAAAGGCG
*
14497 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGGGGTGTCCTGCTCTT
1 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTT
14562 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGA
66 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGA
**
14627 AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAACTTGCCAC
131 AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAGGTGCCAC
14692 CAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACT
196 CAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACT
**
14757 TCGTCCCCACATATATCGAATCCTCCACCTACCCGCTAGGCCTTAAATTGTCGAAAATTGGCCCG
261 TCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGGCCCG
* *
14822 GACAAAATTAGTTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAG
326 GACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAG
*
14887 ACAAATAGACACCATTTTATCTGCGGCCGCGTGTTGTGACCTTAGAGTGATTAAACAAGAGGTTT
391 ACAAATAGACACCATTTTATCTGCGGCCGCATGTTGTGACCTTAGAGTGATTAAACAAGAGGTTT
14952 AATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAG
456 AATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAG
*
15017 GGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGACAGGTGTTGGTT
521 GGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTAACCTCCTTAGACAGGTGTTGGTT
15082 ACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
586 ACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
15147 AAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGATG
651 AAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGATG
15212 AAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGA
716 AAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGA
15277 CAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTCCT
781 CAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTCCT
*
15342 GCTCTGTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGTGCC
846 GCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGTGCC
15407 ACCAACTCGTGTGGGCTTTGAAAGGCG
911 ACCAACTCGTGTGGGCTTTGAAAGGCG
15434 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTT
1 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTT
15499 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGA
66 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGA
* **
15564 AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGATTGAAACTTGCCAC
131 AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAGGTGCCAC
*
15629 CAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGAATAAAGGTGCCACCAACT
196 CAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACT
*
15694 TCGTCCCAACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGGCCCG
261 TCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGGCCCG
15759 GACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAG
326 GACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAG
*
15824 ACAAATAGACACCATTTTATCTGCGGCCACATGTTGTGACCTTAGAGTGATTAAACAAGAGGTTT
391 ACAAATAGACACCATTTTATCTGCGGCCGCATGTTGTGACCTTAGAGTGATTAAACAAGAGGTTT
*
15889 AATTAAAGCTTCACCACGATGGAGG
456 AATTAAAGCTTCACCATGATGGAGG
15914 ATGAAATGGG
Statistics
Matches: 9163, Mismatches: 451, Indels: 366
0.92 0.05 0.04
Matches are distributed among these distances:
868 4 0.00
869 4 0.00
870 20 0.00
871 13 0.00
872 16 0.00
873 16 0.00
874 15 0.00
875 3 0.00
876 30 0.00
877 40 0.00
878 15 0.00
879 16 0.00
880 13 0.00
881 368 0.04
882 9 0.00
883 3 0.00
884 9 0.00
885 7 0.00
886 1 0.00
892 4 0.00
893 4 0.00
894 1 0.00
895 2 0.00
896 5 0.00
897 3 0.00
899 2 0.00
902 5 0.00
903 15 0.00
904 10 0.00
905 7 0.00
906 4 0.00
907 2 0.00
908 18 0.00
909 2 0.00
910 18 0.00
911 2 0.00
912 4 0.00
913 7 0.00
914 10 0.00
915 15 0.00
916 5 0.00
919 2 0.00
921 3 0.00
922 5 0.00
923 2 0.00
924 1 0.00
925 4 0.00
926 4 0.00
932 1 0.00
933 7 0.00
934 358 0.04
935 303 0.03
936 832 0.09
937 3114 0.34
938 2051 0.22
939 809 0.09
940 756 0.08
941 41 0.00
942 29 0.00
943 3 0.00
944 15 0.00
945 20 0.00
946 16 0.00
947 12 0.00
948 20 0.00
949 4 0.00
950 4 0.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (937 bp):
TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTT
TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGA
AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAGGTGCCAC
CAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACT
TCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTTAAATTGTCGAAAATTGGCCCG
GACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAG
ACAAATAGACACCATTTTATCTGCGGCCGCATGTTGTGACCTTAGAGTGATTAAACAAGAGGTTT
AATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAG
GGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTAACCTCCTTAGACAGGTGTTGGTT
ACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
AAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCAAGGACAAAGGAAAAGAGGATG
AAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGA
CAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTCCT
GCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAAAAGTGCC
ACCAACTCGTGTGGGCTTTGAAAGGCG
Found at i:8132 original size:110 final size:110
Alignment explanation
Indices: 7939--8137 Score: 294
Period size: 110 Copynumber: 1.8 Consensus size: 110
7929 ATAAAGTGTA
7939 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTT
1 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTT
*
8004 TTAGGACTGAAAGGTGCCACCAACGTGTATGGGATTTAAGAGGTG
66 TGAGGACTGAAAGGTGCCACCAACGTGTATGGGATTTAAGAGGTG
* * * * * *
8049 TCCTGCTCTTTGAGGATTGGAAAA-TGCCACCAACTTGTGTGGGCTTT-AAATGGTGTCCTGCTC
1 TCCTGCTCATTGAGGAGT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGAAA-GGCGTCCTACTC
*
8112 TTTGGGGACTGAAAGGTGCCACCAAC
64 TTTGAGGACTGAAAGGTGCCACCAAC
8138 TTTTGTGGGC
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
109 3 0.04
110 72 0.91
111 4 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (110 bp):
TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTT
TGAGGACTGAAAGGTGCCACCAACGTGTATGGGATTTAAGAGGTG
Found at i:8918 original size:55 final size:55
Alignment explanation
Indices: 8820--9135 Score: 341
Period size: 55 Copynumber: 5.7 Consensus size: 55
8810 ATAAAGTGTA
* * * * *
8820 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * *
8875 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTCTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * * * *
8930 TCCTGCTCTTTGAGGACTGGAAA-ATACCACCAACTTGTGTGGGGTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
** * *
8985 TCCTATTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* ** *
9040 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCGTAGGAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGC-TTTGAAAG-----GCG
9101 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
9136 CGTCCCCACA
Statistics
Matches: 221, Mismatches: 30, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
54 6 0.03
55 168 0.76
56 12 0.05
60 17 0.08
61 18 0.08
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:9034 original size:29 final size:27
Alignment explanation
Indices: 9001--9083 Score: 73
Period size: 26 Copynumber: 3.0 Consensus size: 27
8991 TCTTTGGGGA
9001 CTGAAAGGTGCCACCAACTTGTGTGGG
1 CTGAAAGGTGCCACCAACTTGTGTGGG
* ** *
9028 CTTTGAAAGGGGTCCTGC-TCTT-TG-GGG
1 C--TGAAAGGTG-CCACCAACTTGTGTGGG
9055 ACTGAAAGGTGCCACCAACTTGTGTGGG
1 -CTGAAAGGTGCCACCAACTTGTGTGGG
9083 C
1 C
9084 GTAGGAAAGA
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
25 3 0.07
26 11 0.27
27 7 0.17
28 6 0.15
29 11 0.27
30 3 0.07
ACGTcount: A:0.19, C:0.22, G:0.34, T:0.25
Consensus pattern (27 bp):
CTGAAAGGTGCCACCAACTTGTGTGGG
Found at i:9853 original size:55 final size:55
Alignment explanation
Indices: 9758--10073 Score: 361
Period size: 55 Copynumber: 5.7 Consensus size: 55
9748 ATAAAGTGTA
* * * * * *
9758 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
9813 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
9868 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
9923 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGG-G
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA-GGTG
* * ** **
9978 TCCTTCTCTTTGGGGACTGAAACTTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
*
10039 TCCTGCTCTTTGAGGAAT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
10074 CATCCCCACA
Statistics
Matches: 226, Mismatches: 23, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
54 6 0.03
55 178 0.79
56 11 0.05
60 16 0.07
61 15 0.07
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:9972 original size:29 final size:29
Alignment explanation
Indices: 9892--9973 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 29
9882 GACTGGAAAA
*
9892 TGCCACCAACTTGTGTGGGCTTTAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGG
** *
9921 TGTCCTGC-TCTT-TG-GGGAC--TGAAAGG
1 TG-CCACCAACTTGTGTGGG-CTTTGAAAGG
9947 TGCCACCAACTTGTGTGGGCTTTGAAA
1 TGCCACCAACTTGTGTGGGCTTTGAAA
9974 TGGGTCCTTC
Statistics
Matches: 39, Mismatches: 7, Indels: 14
0.65 0.12 0.23
Matches are distributed among these distances:
25 3 0.08
26 11 0.28
27 6 0.15
28 6 0.15
29 10 0.26
30 3 0.08
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (29 bp):
TGCCACCAACTTGTGTGGGCTTTGAAAGG
Found at i:10787 original size:55 final size:55
Alignment explanation
Indices: 10692--11007 Score: 386
Period size: 55 Copynumber: 5.7 Consensus size: 55
10682 ATAATGTGTA
* * * * *
10692 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
10747 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * *
10802 TCCTGCTCTTTGAGGACTGGAAA-ATAGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGT-GCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
10858 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* ** *
10913 TCCTGCTCTTTGGGGACTGAAACTTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG----GCG
10973 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
11008 CGTCCCAACA
Statistics
Matches: 229, Mismatches: 22, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
54 2 0.01
55 140 0.61
56 52 0.23
57 2 0.01
59 15 0.07
60 18 0.08
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:10880 original size:26 final size:26
Alignment explanation
Indices: 10851--10934 Score: 73
Period size: 26 Copynumber: 3.1 Consensus size: 26
10841 GTGGGCTTTA
10851 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
10877 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
*
10906 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
10932 AAA
1 AAA
10935 CTTGCCACCA
Statistics
Matches: 44, Mismatches: 7, Indels: 14
0.68 0.11 0.22
Matches are distributed among these distances:
25 3 0.07
26 15 0.34
27 6 0.14
28 6 0.14
29 11 0.25
30 3 0.07
ACGTcount: A:0.20, C:0.19, G:0.33, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:10885 original size:111 final size:109
Alignment explanation
Indices: 10692--11005 Score: 407
Period size: 111 Copynumber: 2.8 Consensus size: 109
10682 ATAATGTGTA
* * * * * *
10692 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTT
1 TCCTGCTCTTTGAGGACTGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
*
10757 TGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
65 TGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTGAA-AGGGG
*
10802 TCCTGCTCTTTGAGGACTGGAAAATAGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
1 TCCTGCTCTTTGAGGACT-GAAAAT-GCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
* *
10867 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
64 TTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTGAAAGGGG
* * *
10913 TCCTGCTCTTTGGGGACTGAAACTTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGCATCCTG
1 TCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAAAG----GCGTCCTG
10978 CTCTTTGAGGACT-AAAGGTGCCACCAAC
60 CTCTTTGAGGACTGAAAGGTGCCACCAAC
11006 TTCGTCCCAA
Statistics
Matches: 180, Mismatches: 15, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
110 43 0.24
111 102 0.57
112 2 0.01
114 15 0.08
115 18 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (109 bp):
TCCTGCTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTT
GAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTGAAAGGGG
Found at i:10907 original size:29 final size:29
Alignment explanation
Indices: 10828--10910 Score: 77
Period size: 26 Copynumber: 3.0 Consensus size: 29
10818 CTGGAAAATA
*
10828 GCCACCAACTTGTGTGGGCTTTAAAAGGT
1 GCCACCAACTTGTGTGGGCTTTGAAAGGT
** *
10857 GTCCTGC-TCTT-TG-GGGAC--TGAAAGGT
1 G-CCACCAACTTGTGTGGG-CTTTGAAAGGT
10883 GCCACCAACTTGTGTGGGCTTTGAAAGG
1 GCCACCAACTTGTGTGGGCTTTGAAAGG
10911 GGTCCTGCTC
Statistics
Matches: 40, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
25 3 0.08
26 11 0.28
27 6 0.15
28 6 0.15
29 11 0.28
30 3 0.08
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.28
Consensus pattern (29 bp):
GCCACCAACTTGTGTGGGCTTTGAAAGGT
Found at i:11726 original size:55 final size:55
Alignment explanation
Indices: 11631--11946 Score: 377
Period size: 55 Copynumber: 5.7 Consensus size: 55
11621 ATAAAGTGTA
* * * * *
11631 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
11686 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * * *
11741 TCCTGCTCTTTGAGGACTGGAAA-ATACCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
11796 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* ** *
11851 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCGTAGGAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGC-TTTGAAAG-----GCG
11912 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
11947 CGTCCCACAT
Statistics
Matches: 229, Mismatches: 22, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
54 6 0.03
55 176 0.77
56 12 0.05
60 17 0.07
61 18 0.08
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:11818 original size:26 final size:26
Alignment explanation
Indices: 11789--11876 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
11779 GTGGGCTTTA
11789 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
11815 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
*
11844 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
11870 AAAGGTG
1 AAAGGTG
11877 CCACCAACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 14
0.68 0.12 0.20
Matches are distributed among these distances:
25 3 0.06
26 18 0.38
27 6 0.13
28 6 0.13
29 11 0.23
30 3 0.06
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:12651 original size:55 final size:55
Alignment explanation
Indices: 12567--12883 Score: 327
Period size: 55 Copynumber: 5.7 Consensus size: 55
12557 AATAAAGTGT
* * * * *
12567 ATCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGC
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
* * *
12622 ATCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGT
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGC
* * ** * *
12677 GTCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGCAGGCTTTAAAAGGT
1 ATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
* *
12732 GTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGG-
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA-GGC
* * **
12787 GTCCTGCTCTTTGGGGACTGAAACTTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GC
* *
12848 ATCCTGCTCTTTGAGGAAT-AAAGGTGCCACTAACTT
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
12884 CGTCCCCACA
Statistics
Matches: 223, Mismatches: 27, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
54 6 0.03
55 175 0.78
56 11 0.05
60 15 0.07
61 16 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (55 bp):
ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
Found at i:13691 original size:26 final size:26
Alignment explanation
Indices: 13662--13750 Score: 74
Period size: 26 Copynumber: 3.3 Consensus size: 26
13652 GTGGGCTTTA
13662 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
13688 AAAGGTG-CCACCAACTTGTGTAGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG--GGGAC--TG
*
13718 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
13744 AAAGGTG
1 AAAGGTG
13751 CCACCAACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
25 3 0.06
26 18 0.38
27 5 0.11
28 2 0.04
29 5 0.11
30 11 0.23
31 3 0.06
ACGTcount: A:0.20, C:0.18, G:0.35, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:13735 original size:56 final size:55
Alignment explanation
Indices: 13504--13820 Score: 352
Period size: 55 Copynumber: 5.7 Consensus size: 55
13494 ATAATGTGTA
* * * * * *
13504 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * * *
13559 TCCTACTCTTTGAAGACTGAAAGGTGCCACCAACGTGTCTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* * *
13614 TCCTGCTCTTTGAGGACTGGAAA-ATACCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
13669 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTAGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGT-GGGCTTTGAAAGGTG
* ** **
13725 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCGTAGGAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGC-TTTGAAAG-----GTG
13786 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
13821 CGTCCCCACA
Statistics
Matches: 225, Mismatches: 26, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
54 6 0.03
55 119 0.53
56 65 0.29
60 17 0.08
61 18 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:14537 original size:55 final size:55
Alignment explanation
Indices: 14442--14757 Score: 377
Period size: 55 Copynumber: 5.7 Consensus size: 55
14432 ATAAAATGTA
* * * * *
14442 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * *
14497 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGGGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * *
14552 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
14607 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* ** *
14662 TCCTGCTCTTTGGGGACTGAAACTTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
14723 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
14758 CGTCCCCACA
Statistics
Matches: 227, Mismatches: 24, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
54 6 0.03
55 178 0.78
56 10 0.04
60 15 0.07
61 18 0.08
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:14629 original size:26 final size:26
Alignment explanation
Indices: 14600--14683 Score: 73
Period size: 26 Copynumber: 3.1 Consensus size: 26
14590 GTGGGCTTTA
14600 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
14626 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
*
14655 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
14681 AAA
1 AAA
14684 CTTGCCACCA
Statistics
Matches: 44, Mismatches: 7, Indels: 14
0.68 0.11 0.22
Matches are distributed among these distances:
25 3 0.07
26 15 0.34
27 6 0.14
28 6 0.14
29 11 0.25
30 3 0.07
ACGTcount: A:0.20, C:0.19, G:0.33, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:14656 original size:29 final size:29
Alignment explanation
Indices: 14576--14659 Score: 79
Period size: 29 Copynumber: 3.0 Consensus size: 29
14566 GACTGGAAAA
*
14576 TGCCACCAACTTGTGTGGGCTTTAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGG
** *
14605 TGTCCTGC-TCTT-TG-GGGAC--TGAAAGG
1 TG-CCACCAACTTGTGTGGG-CTTTGAAAGG
14631 TGCCACCAACTTGTGTGGGCTTTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGG
14660 GGTCCTGCTC
Statistics
Matches: 41, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
25 3 0.07
26 11 0.27
27 6 0.15
28 6 0.15
29 12 0.29
30 3 0.07
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (29 bp):
TGCCACCAACTTGTGTGGGCTTTGAAAGG
Found at i:15474 original size:55 final size:55
Alignment explanation
Indices: 15379--15694 Score: 368
Period size: 55 Copynumber: 5.7 Consensus size: 55
15369 ATAAAGTGTA
* * * * * *
15379 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
15434 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
15489 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
15544 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * ** **
15599 TCCTGCTCTTTGGGGATTGAAACTTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
*
15660 TCCTGCTCTTTGAGGAAT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
15695 CGTCCCAACA
Statistics
Matches: 227, Mismatches: 24, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
54 6 0.03
55 179 0.79
56 10 0.04
60 15 0.07
61 17 0.07
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:15593 original size:29 final size:29
Alignment explanation
Indices: 15513--15649 Score: 85
Period size: 29 Copynumber: 4.9 Consensus size: 29
15503 GACTGGAAAA
*
15513 TGCCACCAACTTGTGTGGGCTTTAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGG
** *
15542 TGTCCTGC-TCTT-TG-GGGAC--TGAAAGG
1 TG-CCACCAACTTGTGTGGG-CTTTGAAAGG
15568 TGCCACCAACTTGTGTGGGCTTTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGG
* ** * * **
15597 GGTCCTGC-TCTT-TG-GGG-ATTGAAACT
1 TG-CCACCAACTTGTGTGGGCTTTGAAAGG
15623 TGCCACCAACTTGTGTGGGCTTTGAAA
1 TGCCACCAACTTGTGTGGGCTTTGAAA
15650 AGAAAAAGCA
Statistics
Matches: 77, Mismatches: 19, Indels: 24
0.64 0.16 0.20
Matches are distributed among these distances:
25 6 0.08
26 21 0.27
27 11 0.14
28 11 0.14
29 22 0.29
30 6 0.08
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (29 bp):
TGCCACCAACTTGTGTGGGCTTTGAAAGG
Found at i:16197 original size:55 final size:55
Alignment explanation
Indices: 16084--16399 Score: 345
Period size: 55 Copynumber: 5.7 Consensus size: 55
16074 ATAATGTGTA
* * * * * *
16084 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * *
16139 TCCTACTCTTTGAAGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* * *
16194 TCCTGCTCTTTGAGGACTGGAAA-ATACCACCAACTTGTGTGGGCTTTAAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-GAAAGGTG
* *
16250 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* **
16305 TCCTGCTC-TTGGGGACTGAAAAGGTGCCACC-ACTTGTGTGGGCTTTGGAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTT-GAAAG-----GTG
*
16365 TCCTGCTCTTTGAGGACT-AAAGTTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
16400 CGTCCCCACA
Statistics
Matches: 224, Mismatches: 23, Indels: 23
0.83 0.09 0.09
Matches are distributed among these distances:
54 27 0.12
55 115 0.51
56 48 0.21
57 2 0.01
59 11 0.05
60 13 0.06
61 8 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:16281 original size:111 final size:109
Alignment explanation
Indices: 16084--16350 Score: 351
Period size: 111 Copynumber: 2.4 Consensus size: 109
16074 ATAATGTGTA
* * * *
16084 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTT
1 TCCTGCTC-TTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACTCTT
*
16149 TGAAGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
65 TGAAGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTGAA-AGGGG
* * *
16194 TCCTGCTCTTTGAGGACTGGAAAA-TACCACCAACTTGTGTGGGCTTTAAAAAGGTGTCCTGCTC
1 TCCTGCTC-TTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGCGTCCTACTC
** *
16258 TTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
63 TTTGAAGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTGAAAGGGG
*
16305 TCCTGCTCTTGGGGACTGAAAAGGTGCCACC-ACTTGTGTGGGCTTT
1 TCCTGCTCTTGAGGACTGAAAA-GTGCCACCAACTTGTGTGGGCTTT
16351 GGAAAGAAAA
Statistics
Matches: 138, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
109 5 0.04
110 60 0.43
111 71 0.51
112 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (109 bp):
TCCTGCTCTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACTCTTT
GAAGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTGAAAGGGG
Found at i:16554 original size:705 final size:704
Alignment explanation
Indices: 15205--16617 Score: 2614
Period size: 705 Copynumber: 2.0 Consensus size: 704
15195 CAAAGGAAAA
*
15205 GAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTGCTTC
1 GAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTACTTC
*
15270 TTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAAT
66 TTGAGGACAAAGTGAAAAAAAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAAT
*
15335 ACGTCCTGCTCTGTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAA
131 ACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAA
*
15400 AAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCCACC
196 AAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAAGACTGAAAGGTGCCACC
*
15465 AACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTG
261 AACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATACCACCAACTTGTGTG
15530 GGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA
326 GGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA
* *
15595 GGGGTCCTGCTCTTTGGGGATTGAAACTTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
391 GGGGTCCTGCTCTTTGGGGACTGAAACGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
15660 TCCTGCTCTTTGAGGAATAAAGGTGCCACCAACTTCGTCCCAACATATATCGAATCCTCCACCTA
456 TCCTGCTCTTTGAGGAATAAAGGTGCCACCAACTTCGTCCCAACATATATCGAATCCTCCACCTA
* *
15725 CTAGCTAGGCCTTAAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCT
521 CTAGCTAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATAAGGTGTCTACAGCTGCCCCTCT
15790 TTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCTGCGGCCACA
586 TTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCTGCGG-CACA
15855 TGTTGTGACCTTAGAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCACGATG
650 TGTTGTGACCTTAGAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCACGATG
15910 GAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTACTTC
1 GAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTACTTC
*
15975 TTGAGGACAAAGTGAAAAAAAGTACGTCCCATTTTCTAAGGACAAAGGAAAAAGGGAAATGAAAT
66 TTGAGGACAAAGTGAAAAAAAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAAT
* *
16040 ACGTCCTTCTCTCTGAGGACAAAGAAAGAGGAAAATAATGTGTATCCTGCTCATTGAGGAGTAAA
131 ACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAA
16105 AAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAAGACTGAAAGGTGCCACC
196 AAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAAGACTGAAAGGTGCCACC
16170 AACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATACCACCAACTTGTGTG
261 AACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATACCACCAACTTGTGTG
16235 GGCTTTAAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA
326 GGCTTT-AAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA
* *
16300 AGGGGTCCTGCTC-TTGGGGACTGAAAAGGTGCCACC-ACTTGTGTGGGCTTTGGAAAGAAAAAG
390 AGGGGTCCTGCTCTTTGGGGACTG-AAACGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAG
* * *
16363 CATCCTGCTCTTTGAGGACTAAAGTTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACC
454 CATCCTGCTCTTTGAGGAATAAAGGTGCCACCAACTTCGTCCCAACATATATCGAATCCTCCACC
*
16428 TACTAGCTAGGCCTTAAATTGTCGAAAATTGACCCGGGCAAAATAAGGTGTCTACAGCTGCCCCT
519 TACTAGCTAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATAAGGTGTCTACAGCTGCCCCT
16493 CTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCTGCGGCAC
584 CTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCTGCGGCAC
*
16558 ATGTTGTGACCTTAGAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATG
649 ATGTTGTGACCTTAGAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCACGATG
16614 GAGG
1 GAGG
16618 GTGTATTGGC
Statistics
Matches: 687, Mismatches: 19, Indels: 5
0.97 0.03 0.01
Matches are distributed among these distances:
704 62 0.09
705 544 0.79
706 81 0.12
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (704 bp):
GAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGAAAGTGTCCTACTTC
TTGAGGACAAAGTGAAAAAAAGTACGTCCCATTTTCCAAGGACAAAGGAAAAAGGGAAATGAAAT
ACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCATTGAGGAGTAAA
AAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAAGACTGAAAGGTGCCACC
AACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATACCACCAACTTGTGTG
GGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA
GGGGTCCTGCTCTTTGGGGACTGAAACGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
TCCTGCTCTTTGAGGAATAAAGGTGCCACCAACTTCGTCCCAACATATATCGAATCCTCCACCTA
CTAGCTAGGCCTTAAATTGTCGAAAATTGACCCGGACAAAATAAGGTGTCTACAGCTGCCCCTCT
TTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCTGCGGCACAT
GTTGTGACCTTAGAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCACGATG
Done.