genome.fa.s669.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold669
Parameters: 2 7 7 80 10 50 1000
Length:  84068

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1035--1075	2	20.5	2	94	0	73	51	0	0	48	1.00
2515--2557	22	2.0	22	81	9	52	44	11	0	44	1.40
5592--5651	25	2.4	25	100	0	120	33	5	20	41	1.74
6031--6067	18	2.0	19	89	5	58	40	24	5	29	1.77
8350--8409	25	2.4	25	100	0	120	33	5	20	41	1.74
8789--8825	18	2.0	19	89	5	58	40	24	5	29	1.77
10454--10501	13	3.7	13	88	0	69	41	12	10	35	1.77
14056--14085	12	2.6	12	94	5	53	0	13	40	46	1.43
16760--17841	49	22.9	49	72	13	653	31	18	25	24	1.98
16813--18007	87	12.8	101	84	6	676	30	18	25	24	1.98
17015--18097	87	12.0	87	86	3	1266	30	19	25	25	1.98
17155--17401	39	5.9	39	70	15	179	28	19	25	26	1.99
17717--18037	39	7.5	39	71	17	219	28	20	25	25	1.99
18421--18445	13	1.9	13	100	0	50	36	16	16	32	1.90
18509--18533	13	1.9	13	100	0	50	32	16	16	36	1.90
18542--18670	52	2.5	52	94	0	222	34	17	17	29	1.94
21726--22576	49	18.2	49	77	11	759	30	17	25	26	1.98
21854--22012	39	3.8	39	75	13	147	27	18	25	27	1.98
21800--22532	87	8.0	87	79	9	640	30	18	24	26	1.98
22591--22756	30	5.6	30	82	8	164	18	18	31	31	1.95
22591--22756	60	2.8	60	83	9	200	18	18	31	31	1.95
22737--23329	27	19.0	33	80	10	356	35	13	30	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22707--23227	61	8.4	61	81	10	287	33	13	31	21	1.92
22767--23090	115	2.8	117	79	13	362	32	13	33	21	1.92
23060--23228	34	4.9	35	86	3	227	40	11	27	20	1.86
23164--23329	31	5.2	31	79	11	140	40	12	25	21	1.88
23197--23327	62	2.1	62	85	7	185	38	12	27	21	1.90
23424--23461	8	4.6	8	90	6	58	26	5	23	44	1.74
24527--24581	6	9.2	6	81	13	60	0	0	16	83	0.64
24527--24573	15	3.4	14	82	8	53	0	0	12	87	0.55
24527--24579	27	2.0	27	86	13	76	0	0	15	84	0.61
24533--24581	15	3.1	16	88	8	73	0	0	18	81	0.69
31578--31602	13	1.9	13	100	0	50	40	8	16	36	1.77
31559--31622	33	1.9	33	87	6	94	40	10	15	32	1.82
31589--31626	20	1.9	20	100	0	76	39	10	13	36	1.79
32159--32201	3	14.3	3	85	0	59	27	30	2	39	1.69
33774--33828	20	2.8	20	82	0	65	34	14	9	41	1.77
36736--36814	22	3.7	22	78	6	92	40	3	5	50	1.42
36736--36855	43	2.8	43	79	7	118	40	3	5	50	1.43
37363--37393	15	2.1	15	93	0	53	51	3	0	45	1.17
41107--41132	13	2.0	13	100	0	52	38	15	15	30	1.88
43166--43196	15	2.1	15	93	0	53	48	16	22	12	1.80
45276--45301	13	2.0	13	100	0	52	30	15	15	38	1.88
45422--45468	21	2.3	20	78	10	51	29	19	6	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47849--47874	13	2.0	13	100	0	52	38	15	15	30	1.88
50578--50629	22	2.4	22	80	0	59	25	9	9	55	1.62
50952--50992	15	2.8	14	82	10	55	41	4	2	51	1.36
51838--51890	21	2.5	22	78	15	65	56	1	1	39	1.21
52007--52304	102	2.8	106	75	11	274	42	3	6	47	1.45
52129--52570	228	1.9	228	86	3	622	40	3	5	49	1.45
56496--56558	23	2.7	22	83	11	74	57	0	0	42	0.99
57124--57158	13	2.9	12	88	12	54	48	2	0	48	1.16
58267--58320	11	4.8	11	81	4	63	31	0	1	66	1.02
58267--58322	6	9.8	6	75	21	50	32	0	1	66	1.03
58267--58320	22	2.4	23	87	3	74	31	0	1	66	1.02
58270--58333	28	2.3	27	81	5	74	35	0	1	62	1.05
58324--58384	29	2.1	30	87	9	90	49	0	0	50	1.00
61183--61219	18	2.1	18	100	0	74	32	0	27	40	1.57
71486--71608	61	2.0	61	96	0	228	46	15	14	23	1.83

Tables:   1

The End!