Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold672

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8973
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38


Found at i:944 original size:22 final size:22

Alignment explanation


    Indices: 899--944  Score: 56
    Period size: 22  Copynumber: 2.1  Consensus size: 22

        889 TTATAATTAT

                            *  *  
        899 ATTAAAAATTAATAAATTATAA
          1 ATTAAAAATTAATAAAATAAAA

                  *       *       
        921 ATTAAATATTAATATAATAAAA
          1 ATTAAAAATTAATAAAATAAAA

              
        943 AT
          1 AT

        945 ATTTTTATAT


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  22   20  1.00

ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37


Consensus pattern (22 bp):   
ATTAAAAATTAATAAAATAAAA
Done.