Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold673
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 40656
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Found at i:3020 original size:2 final size:2
Alignment explanation
Indices: 3013--3049 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
3003 TTGATATTAC
3013 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3050 GAGGAAGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:3931 original size:20 final size:19
Alignment explanation
Indices: 3902--3947 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
3892 AATAATTTAA
* *
3902 ATTCATATCAATTAAAATTT
1 ATTCAAATCAAAT-AAATTT
3922 ATTCAAATCAAATAAATTT
1 ATTCAAATCAAATAAATTT
3941 -TTCAAAT
1 ATTCAAAT
3948 TTAAGTTCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 7 0.29
19 6 0.25
20 11 0.46
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATCAAATAAATTT
Found at i:4468 original size:16 final size:18
Alignment explanation
Indices: 4447--4479 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
4437 TAATAAAATC
4447 ATAATG-AAAAA-AATTA
1 ATAATGCAAAAACAATTA
4463 ATAATGCAAAAACAATT
1 ATAATGCAAAAACAATT
4480 GGTAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 5 0.33
18 4 0.27
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.24
Consensus pattern (18 bp):
ATAATGCAAAAACAATTA
Found at i:9428 original size:22 final size:22
Alignment explanation
Indices: 9403--9445 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
9393 GGTATTTATA
*
9403 TGACTTTTCCTCTTGTATGGCT
1 TGACTTTTCCTCATGTATGGCT
9425 TGACTTTTCCTCATGTATGGC
1 TGACTTTTCCTCATGTATGGC
9446 ATGTGCACGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.12, C:0.23, G:0.19, T:0.47
Consensus pattern (22 bp):
TGACTTTTCCTCATGTATGGCT
Found at i:9710 original size:54 final size:54
Alignment explanation
Indices: 9628--9735 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
9618 TGCTGCCTTA
*
9628 GTCATTATCCTGATCAAGTGGTGACTATTGCCTGCAACAAATAGCTCTGAAACC
1 GTCATTATCCTGATCAAGTGGTGACTATTGCCTGCAACAAATAGCTCAGAAACC
9682 GTCATTATCCTGATCAAGTGGTGACTATTGCCTGCAACAAATAGCTCAGAAACC
1 GTCATTATCCTGATCAAGTGGTGACTATTGCCTGCAACAAATAGCTCAGAAACC
9736 ATCAGTTGTG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.27
Consensus pattern (54 bp):
GTCATTATCCTGATCAAGTGGTGACTATTGCCTGCAACAAATAGCTCAGAAACC
Found at i:10434 original size:2 final size:2
Alignment explanation
Indices: 10427--10457 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
10417 ATAGTTGAGC
10427 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10458 TCGTATTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10759 original size:20 final size:21
Alignment explanation
Indices: 10705--10804 Score: 77
Period size: 20 Copynumber: 4.8 Consensus size: 21
10695 TAAACGTAAC
10705 AATTATAATATAAAA-AATTA
1 AATTATAATATAAAATAATTA
* *
10725 AAATATGATATAAAATTAA-TA
1 AATTATAATATAAAA-TAATTA
10746 AATTATAATA-AAAAT-ATATA
1 AATTATAATATAAAATAAT-TA
*
10766 TAATCATAATAATAAAATAATTGA
1 -AATTATAAT-ATAAAATAATT-A
*
10790 AA--ATAATGTAAAATA
1 AATTATAATATAAAATA
10805 TTATTTGATA
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
18 1 0.02
19 1 0.02
20 26 0.40
21 23 0.35
22 3 0.05
23 8 0.12
24 3 0.05
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (21 bp):
AATTATAATATAAAATAATTA
Found at i:10870 original size:32 final size:35
Alignment explanation
Indices: 10834--10905 Score: 82
Period size: 32 Copynumber: 2.2 Consensus size: 35
10824 ATAAAAATAT
* *
10834 TATAAAAAT-A-TAATATTTTAAAATTTATAT-AA
1 TATAAAAATCAGTAACATATTAAAATTTATATAAA
*
10866 TAT--AAATCAGTAACGTATTAAAATTTATATAAA
1 TATAAAAATCAGTAACATATTAAAATTTATATAAA
10899 TATAAAA
1 TATAAAA
10906 TATTTTAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
30 4 0.12
31 1 0.03
32 20 0.62
33 5 0.16
35 2 0.06
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (35 bp):
TATAAAAATCAGTAACATATTAAAATTTATATAAA
Found at i:10926 original size:19 final size:19
Alignment explanation
Indices: 10898--10943 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
10888 ATTTATATAA
*
10898 ATATAAAATATTTT-AAAT
1 ATATATAATATTTTAAAAT
10916 ATATCATAATATTTTAAAAT
1 ATAT-ATAATATTTTAAAAT
10936 ATATATAA
1 ATATATAA
10944 GATATAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 4 0.16
19 13 0.52
20 8 0.32
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (19 bp):
ATATATAATATTTTAAAAT
Found at i:11398 original size:27 final size:27
Alignment explanation
Indices: 11330--11398 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
11320 TTTAATTATT
*
11330 TTGATTTTAAAT-TTTTTTCGATTCAA
1 TTGATTTTAAATATTTATTCGATTCAA
*
11356 TTGATTTTATAA-ATTTATT-GAATTTAA
1 TTGATTTTA-AATATTTATTCG-ATTCAA
*
11383 TTTATTTTAAATATTT
1 TTGATTTTAAATATTT
11399 TAAAATTAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
26 12 0.33
27 24 0.67
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.59
Consensus pattern (27 bp):
TTGATTTTAAATATTTATTCGATTCAA
Found at i:11678 original size:17 final size:16
Alignment explanation
Indices: 11652--11685 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
11642 TCCAAATTGC
11652 TAAAAAATAAAATAAA
1 TAAAAAATAAAATAAA
*
11668 TAAATAAATAAAGTAAA
1 TAAA-AAATAAAATAAA
11685 T
1 T
11686 GGAAGCAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (16 bp):
TAAAAAATAAAATAAA
Found at i:12944 original size:17 final size:16
Alignment explanation
Indices: 12926--12980 Score: 57
Period size: 14 Copynumber: 3.7 Consensus size: 16
12916 TAATACATTA
12926 ATAATTTATA-T-TAT
1 ATAATTTATATTATAT
12940 ATAATTT-T-TTATAT
1 ATAATTTATATTATAT
*
12954 AT-ATTTATATTATTTT
1 ATAATTTATATTA-TAT
12970 ATAATTTATAT
1 ATAATTTATAT
12981 CATTTTATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
13 6 0.18
14 13 0.38
15 3 0.09
16 4 0.12
17 8 0.24
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATAATTTATATTATAT
Found at i:12953 original size:12 final size:14
Alignment explanation
Indices: 12922--12980 Score: 61
Period size: 13 Copynumber: 4.1 Consensus size: 14
12912 ATTTTAATAC
12922 ATTA-ATAATTTAT
1 ATTATATAATTTAT
12935 ATTATATAATTT-T
1 ATTATATAATTTAT
12948 -TTATATATATTTAT
1 ATTATATA-ATTTAT
12962 ATTATTTTATAATTTAT
1 ATTA---TATAATTTAT
12979 AT
1 AT
12981 CATTTTATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
12 7 0.18
13 9 0.23
14 8 0.21
15 3 0.08
17 8 0.21
18 4 0.10
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
ATTATATAATTTAT
Found at i:12960 original size:10 final size:10
Alignment explanation
Indices: 12897--12990 Score: 57
Period size: 10 Copynumber: 10.3 Consensus size: 10
12887 ATTTAAAAAT
12897 TATATATTTA
1 TATATATTTA
*
12907 TATAAATTT-
1 TATATATTTA
*
12916 TA-ATACATTA
1 TATATA-TTTA
12926 -ATA-ATTTA
1 TATATATTTA
*
12934 TAT-TATATA
1 TATATATTTA
*
12943 -AT-TTTTTA
1 TATATATTTA
12951 TATATATTTA
1 TATATATTTA
12961 TAT-TATTT-
1 TATATATTTA
12969 TATA-ATTTA
1 TATATATTTA
12978 TATCAT-TTTA
1 TAT-ATATTTA
12988 TAT
1 TAT
12991 TTATCGTATT
Statistics
Matches: 65, Mismatches: 8, Indels: 22
0.68 0.08 0.23
Matches are distributed among these distances:
8 18 0.28
9 22 0.34
10 25 0.38
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (10 bp):
TATATATTTA
Found at i:12972 original size:16 final size:16
Alignment explanation
Indices: 12953--12994 Score: 66
Period size: 17 Copynumber: 2.6 Consensus size: 16
12943 ATTTTTTATA
*
12953 TATATTTATATTATTT
1 TATATTTATATCATTT
12969 TATAATTTATATCATTT
1 TAT-ATTTATATCATTT
12986 TATATTTAT
1 TATATTTAT
12995 CGTATTTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 9 0.38
17 15 0.62
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (16 bp):
TATATTTATATCATTT
Found at i:12977 original size:27 final size:27
Alignment explanation
Indices: 12897--12991 Score: 81
Period size: 27 Copynumber: 3.5 Consensus size: 27
12887 ATTTAAAAAT
*
12897 TATATATTTATATAAATTTTAATACA-TTA
1 TATATATTTATAT-TATTTT-ATA-ATTTA
* * **
12926 -ATA-ATTTATATTATATAATTTTTTA
1 TATATATTTATATTATTTTATAATTTA
12951 TATATATTTATATTATTTTATAATTTA
1 TATATATTTATATTATTTTATAATTTA
12978 TATCAT-TTTATATT
1 TAT-ATATTTATATT
12992 TATCGTATTT
Statistics
Matches: 53, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
25 5 0.09
26 6 0.11
27 37 0.70
28 5 0.09
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (27 bp):
TATATATTTATATTATTTTATAATTTA
Found at i:13377 original size:38 final size:38
Alignment explanation
Indices: 13335--13407 Score: 87
Period size: 38 Copynumber: 1.9 Consensus size: 38
13325 ATCTGTCTTG
* *
13335 ATTAATAA-ACTTAAATTATTATTTTAA-AATATTAAAAT
1 ATTAA-AATACTTAAAATATT-TTATAATAATATTAAAAT
*
13373 ATTAAAATATTTAAAATATTTTATAATAATATTAA
1 ATTAAAATACTTAAAATATTTTATAATAATATTAA
13408 TATTTACAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
37 7 0.23
38 23 0.77
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.45
Consensus pattern (38 bp):
ATTAAAATACTTAAAATATTTTATAATAATATTAAAAT
Found at i:13388 original size:17 final size:16
Alignment explanation
Indices: 13358--13392 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 16
13348 AATTATTATT
13358 TTAAAATATTAAAATA
1 TTAAAATATTAAAATA
13374 TTAAAATATTTAAAATA
1 TTAAAATA-TTAAAATA
13391 TT
1 TT
13393 TTATAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
TTAAAATATTAAAATA
Found at i:13409 original size:9 final size:8
Alignment explanation
Indices: 13358--13392 Score: 61
Period size: 8 Copynumber: 4.2 Consensus size: 8
13348 AATTATTATT
13358 TTAAAATA
1 TTAAAATA
13366 TTAAAATA
1 TTAAAATA
13374 TTAAAATA
1 TTAAAATA
13382 TTTAAAATA
1 -TTAAAATA
13391 TT
1 TT
13393 TTATAATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 18 0.69
9 8 0.31
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (8 bp):
TTAAAATA
Found at i:14788 original size:37 final size:37
Alignment explanation
Indices: 14714--14816 Score: 140
Period size: 38 Copynumber: 2.8 Consensus size: 37
14704 ACATACTCAA
14714 ATATTAATACGAATATAATATTGAAAAATATTTTATAT
1 ATATTAATACGAATATAATATTG-AAAATATTTTATAT
*
14752 ATATTAATACGAATATGATATTGAAAATATTTTATAT
1 ATATTAATACGAATATAATATTGAAAATATTTTATAT
* *
14789 AAATT-A-A-GAATACTTATATTGAAAATAT
1 ATATTAATACGAATA-TAATATTGAAAATAT
14817 ATCCATATTC
Statistics
Matches: 61, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
34 5 0.08
35 15 0.25
36 1 0.02
37 18 0.30
38 22 0.36
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.41
Consensus pattern (37 bp):
ATATTAATACGAATATAATATTGAAAATATTTTATAT
Found at i:21853 original size:2 final size:2
Alignment explanation
Indices: 21846--21883 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
21836 CCTCCCCCAC
*
21846 GA GA GA GA GA GA GA GA GA GA GA GA GA GG GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
21884 ACCTCCTTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (2 bp):
GA
Found at i:32969 original size:23 final size:22
Alignment explanation
Indices: 32908--32984 Score: 66
Period size: 23 Copynumber: 3.4 Consensus size: 22
32898 TATAATAAAA
* *
32908 ATAATTTTTATTTAAATTAATT
1 ATAAATTTTATTTAAAATAATT
* *
32930 ATAAATATTGATATAAAATAATT
1 ATAAAT-TTTATTTAAAATAATT
*
32953 TTAAATTTTATTTTAAACAATAA-T
1 ATAAATTTTA-TTT-AA-AATAATT
32977 ATAAATTT
1 ATAAATTT
32985 GTAAAATTAA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 8 0.19
23 20 0.47
24 10 0.23
25 5 0.12
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (22 bp):
ATAAATTTTATTTAAAATAATT
Found at i:33341 original size:15 final size:17
Alignment explanation
Indices: 33302--33347 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
33292 TTTGAATTTG
* *
33302 AATAAATATTAAATATA
1 AATATATATTTAATATA
33319 AATATATATTTAATAT-
1 AATATATATTTAATATA
33335 AAT-TATATTTAAT
1 AATATATATTTAAT
33348 TTTTAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 10 0.37
16 3 0.11
17 14 0.52
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
AATATATATTTAATATA
Found at i:33379 original size:22 final size:21
Alignment explanation
Indices: 33321--33391 Score: 56
Period size: 19 Copynumber: 3.2 Consensus size: 21
33311 TAAATATAAA
* *
33321 TATATATTTAATATAATTATATT
1 TATATATTT-A-ATAATTTTTTT
*
33344 TA-ATTTTTAA-AATTTTTTT
1 TATATATTTAATAATTTTTTT
33363 TATATATTTAGATAATTATATTTT
1 TATATATTTA-ATAATT-T-TTTT
33387 TATAT
1 TATAT
33392 TAATATCAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
19 9 0.23
20 7 0.18
21 2 0.05
22 9 0.23
23 3 0.08
24 9 0.23
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (21 bp):
TATATATTTAATAATTTTTTT
Found at i:33392 original size:22 final size:21
Alignment explanation
Indices: 33323--33396 Score: 57
Period size: 22 Copynumber: 3.5 Consensus size: 21
33313 AATATAAATA
33323 TATATTTAATATAATTATA-TTT
1 TATATTT-A-ATAATTATATTTT
* * *
33345 AATTTTTAA-AATT-TTTTTT
1 TATATTTAATAATTATATTTT
33364 ATATATTTAGATAATTATATTTT
1 -TATATTTA-ATAATTATATTTT
33387 TATA-TTAATA
1 TATATTTAATA
33397 TCAAAATATG
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 1 0.02
19 7 0.17
20 10 0.24
21 5 0.12
22 13 0.32
23 5 0.12
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59
Consensus pattern (21 bp):
TATATTTAATAATTATATTTT
Found at i:33528 original size:2 final size:2
Alignment explanation
Indices: 33516--33548 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
33506 AAAATTGAAA
*
33516 AT AT A- AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33549 GTACATACCC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:33682 original size:2 final size:2
Alignment explanation
Indices: 33675--33720 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
33665 TTGATATTAC
33675 AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33716 AT AT A
1 AT AT A
33721 GGAAGAAAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:37027 original size:27 final size:27
Alignment explanation
Indices: 36989--37052 Score: 128
Period size: 27 Copynumber: 2.4 Consensus size: 27
36979 AATCTTAAAT
36989 CAGATTGATCAAGAACGTGAGGGTGAG
1 CAGATTGATCAAGAACGTGAGGGTGAG
37016 CAGATTGATCAAGAACGTGAGGGTGAG
1 CAGATTGATCAAGAACGTGAGGGTGAG
37043 CAGATTGATC
1 CAGATTGATC
37053 GAGCTTTGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.20
Consensus pattern (27 bp):
CAGATTGATCAAGAACGTGAGGGTGAG
Found at i:37499 original size:3 final size:3
Alignment explanation
Indices: 37491--37525 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
37481 TGTTTCTTTA
37491 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
37526 TTTATAGATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Done.