Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold678
Parameters: 2 7 7 80 10 50 1000
Length:  30237

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4714--4780
36
1.9
35
85
11
93
31
25
10
32
1.89
5239--5263
13
1.9
13
100
0
50
32
16
16
36
1.90
7024--7048
13
1.9
13
100
0
50
32
16
16
36
1.90
8124--8149
13
2.0
13
100
0
52
30
15
15
38
1.88
12248--12298
26
2.0
26
88
0
75
35
5
15
43
1.71
16983--17013
15
2.0
16
93
6
55
51
0
0
48
1.00
17557--17602
16
2.9
16
83
0
65
8
21
32
36
1.84
17627--17660
16
2.1
16
94
0
59
14
17
26
41
1.88
17627--17670
16
2.8
16
89
0
52
13
18
31
36
1.90
17844--17886
18
2.4
18
96
0
77
48
0
0
51
1.00
19024--19054
16
1.9
16
93
0
53
16
19
19
45
1.86
19837--19943
53
2.0
53
98
0
205
57
17
3
21
1.56
24614--24667
26
2.1
26
89
0
81
40
35
5
18
1.74
25348--25425
15
5.3
15
70
14
54
52
0
0
47
1.00
25368--25397
11
2.7
11
100
0
60
60
0
0
40
0.97
25346--25467
16
7.6
16
69
19
69
56
0
0
41
1.10
25384--25430
22
2.1
22
88
7
69
59
0
0
40
0.97
25392--25443
16
3.1
17
83
8
70
59
0
0
40
0.97
25357--25443
33
2.7
33
84
10
108
57
0
0
42
0.98
25402--25495
49
1.9
49
84
4
127
60
4
1
34
1.23
25612--25676
27
2.4
28
75
17
66
66
4
0
29
1.12
25613--25649
16
2.2
16
90
4
56
67
2
0
29
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25686--25733
19
2.6
20
90
9
68
47
20
0
31
1.50
25696--25733
19
2.0
19
100
0
76
47
21
0
31
1.51
29499--29536
20
1.9
20
94
0
67
39
7
13
39
1.73
29560--29633
21
3.6
20
80
14
62
31
16
13
39
1.87
29580--29633
20
2.7
20
78
18
58
31
14
12
40
1.84

Tables:   1

The End!